Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881210 | ACJ84332.1 | 99.320 | 147 | 1 | 0 | 1 | 147 | 181 | 327 | 5.11e-100 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881210 | sp|Q96250|ATPG3_ARATH | 88.276 | 145 | 17 | 0 | 1 | 145 | 177 | 321 | 2.16e-90 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881210 | B7FHV3 | 99.320 | 147 | 1 | 0 | 1 | 147 | 181 | 327 | 2.44e-100 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029850 | Msa0881210 | -0.817219 | 3.694300e-52 | -8.615850e-47 |
| Msa0094940 | Msa0881210 | 0.808668 | 2.765492e-50 | -8.615850e-47 |
| Msa0103490 | Msa0881210 | 0.825748 | 3.958294e-54 | -8.615850e-47 |
| Msa0610750 | Msa0881210 | 0.809977 | 1.449141e-50 | -8.615850e-47 |
| Msa0622600 | Msa0881210 | -0.805900 | 1.067682e-49 | -8.615850e-47 |
| Msa0639670 | Msa0881210 | 0.805408 | 1.354609e-49 | -8.615850e-47 |
| Msa0768680 | Msa0881210 | 0.840240 | 9.793089e-58 | -8.615850e-47 |
| Msa0768710 | Msa0881210 | 0.839152 | 1.879537e-57 | -8.615850e-47 |
| Msa0156310 | Msa0881210 | 0.845330 | 4.344313e-59 | -8.615850e-47 |
| Msa0169820 | Msa0881210 | -0.811699 | 6.144878e-51 | -8.615850e-47 |
| Msa0183010 | Msa0881210 | 0.829564 | 4.797130e-55 | -8.615850e-47 |
| Msa0226620 | Msa0881210 | 0.801481 | 8.824714e-49 | -8.615850e-47 |
| Msa0230640 | Msa0881210 | 0.862761 | 4.031246e-64 | -8.615850e-47 |
| Msa0377610 | Msa0881210 | 0.844079 | 9.437996e-59 | -8.615850e-47 |
| Msa0381600 | Msa0881210 | 0.814959 | 1.180940e-51 | -8.615850e-47 |
| Msa0383490 | Msa0881210 | 0.801001 | 1.106370e-48 | -8.615850e-47 |
| Msa0388540 | Msa0881210 | 0.807435 | 5.061198e-50 | -8.615850e-47 |
| Msa0392040 | Msa0881210 | 0.812367 | 4.392847e-51 | -8.615850e-47 |
| Msa0426820 | Msa0881210 | 0.802493 | 5.464994e-49 | -8.615850e-47 |
| Msa0467740 | Msa0881210 | 0.813788 | 2.143614e-51 | -8.615850e-47 |
| Msa0469940 | Msa0881210 | 0.839263 | 1.759179e-57 | -8.615850e-47 |
| Msa0260270 | Msa0881210 | 0.805157 | 1.528476e-49 | -8.615850e-47 |
| Msa0344690 | Msa0881210 | 0.826611 | 2.467581e-54 | -8.615850e-47 |
| Msa0514130 | Msa0881210 | 0.802110 | 6.552700e-49 | -8.615850e-47 |
| Msa0521620 | Msa0881210 | -0.807424 | 5.089294e-50 | -8.615850e-47 |
| Msa0532810 | Msa0881210 | 0.838850 | 2.250734e-57 | -8.615850e-47 |
| Msa0598830 | Msa0881210 | 0.825449 | 4.658584e-54 | -8.615850e-47 |
| Msa0881160 | Msa0881210 | -0.808117 | 3.626104e-50 | -8.615850e-47 |
| Msa0881210 | Msa1132630 | 0.805872 | 1.082097e-49 | -8.615850e-47 |
| Msa0881210 | Msa1144720 | 0.840449 | 8.635324e-58 | -8.615850e-47 |
| Msa0881210 | Msa1165700 | 0.831007 | 2.130007e-55 | -8.615850e-47 |
| Msa0881210 | Msa1225730 | 0.862248 | 5.796281e-64 | -8.615850e-47 |
| Msa0881210 | Msa1257800 | 0.835492 | 1.625829e-56 | -8.615850e-47 |
| Msa0881210 | Msa1260230 | 0.844496 | 7.292741e-59 | -8.615850e-47 |
| Msa0881210 | Msa1264860 | 0.841446 | 4.729596e-58 | -8.615850e-47 |
| Msa0881210 | Msa1300110 | 0.829560 | 4.806586e-55 | -8.615850e-47 |
| Msa0881210 | Msa1341610 | 0.805324 | 1.410048e-49 | -8.615850e-47 |
| Msa0881210 | Msa1387590 | -0.806536 | 7.843170e-50 | -8.615850e-47 |
| Msa0881210 | Msa1404240 | 0.844868 | 5.791670e-59 | -8.615850e-47 |
| Msa0881210 | Msa1416140 | 0.809288 | 2.037701e-50 | -8.615850e-47 |
| Msa0881210 | Msa1463650 | 0.851904 | 6.547475e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881210 | MtrunA17_Chr4g0073341 | 99.320 | 147 | 1 | 0 | 1 | 147 | 181 | 327 | 5.91e-104 | 300 |
| Msa0881210 | MtrunA17_Chr3g0099081 | 27.429 | 175 | 89 | 5 | 6 | 145 | 176 | 347 | 3.98e-13 | 65.1 |
| Msa0881210 | MtrunA17_Chr2g0288451 | 27.841 | 176 | 92 | 4 | 3 | 145 | 200 | 373 | 2.88e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881210 | AT2G33040.1 | 88.276 | 145 | 17 | 0 | 1 | 145 | 177 | 321 | 2.19e-91 | 268 |
| Msa0881210 | AT4G04640.1 | 29.586 | 169 | 88 | 4 | 7 | 144 | 203 | 371 | 8.58e-14 | 67.4 |
| Msa0881210 | AT1G15700.1 | 27.586 | 174 | 95 | 3 | 3 | 145 | 210 | 383 | 4.67e-13 | 65.5 |
Find 51 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTTGACCAGATATTTC+TGG | 0.183476 | 6_1:-28210223 | Msa0881210:three_prime_UTR |
| AACTCGCCTTGGGGATTTCT+TGG | 0.218664 | 6_1:-28210241 | Msa0881210:three_prime_UTR |
| AAACGATTATTATTATAAAA+AGG | 0.224110 | 6_1:+28210272 | None:intergenic |
| CAAAGGCCAATAGTTATTAT+TGG | 0.237572 | 6_1:+28210131 | None:intergenic |
| TTATTTCCAATAATAACTAT+TGG | 0.339761 | 6_1:-28210137 | Msa0881210:three_prime_UTR |
| TTGTACGTACGCAAGAAAAC+TGG | 0.369183 | 6_1:+28212652 | None:intergenic |
| GTCTGACCCTCACTTATAAT+AGG | 0.386053 | 6_1:-28210621 | Msa0881210:intron |
| TTCAAGGCGAAACTCGCCTT+GGG | 0.387468 | 6_1:-28210251 | Msa0881210:three_prime_UTR |
| TTATAATAATAATCGTTTCA+AGG | 0.413740 | 6_1:-28210267 | Msa0881210:three_prime_UTR |
| TTGTAGGTGTTATTTGGGCA+AGG | 0.419437 | 6_1:+28210057 | None:intergenic |
| AAAACAATTCCAGAAATATC+TGG | 0.429809 | 6_1:+28210214 | None:intergenic |
| GACAGCTCTAGCAGGAATGC+TGG | 0.431443 | 6_1:-28210658 | Msa0881210:CDS |
| TGGAGGAAGTCTCGGTGAAC+TGG | 0.443236 | 6_1:-28212736 | Msa0881210:CDS |
| CCTTGCTCCTTGCTCACTGC+AGG | 0.446628 | 6_1:+28210693 | None:intergenic |
| GAATTGATTGAGATTATCTC+TGG | 0.446916 | 6_1:-28210419 | Msa0881210:CDS |
| TGTAGGTGTTATTTGGGCAA+GGG | 0.459087 | 6_1:+28210058 | None:intergenic |
| ATGACGATATTGAGATATAT+CGG | 0.467507 | 6_1:-28210340 | Msa0881210:three_prime_UTR |
| GTCATTGTCAAATATAATAC+AGG | 0.476926 | 6_1:+28210358 | None:intergenic |
| CTGGATTCGTATGAGATTGA+AGG | 0.483416 | 6_1:-28212717 | Msa0881210:CDS |
| CGATATTGAGATATATCGGT+TGG | 0.487663 | 6_1:-28210336 | Msa0881210:three_prime_UTR |
| CTCGAACTGTTATTTACTTG+TGG | 0.488869 | 6_1:-28210105 | Msa0881210:three_prime_UTR |
| ACAGCTCTAGCAGGAATGCT+GGG | 0.501839 | 6_1:-28210657 | Msa0881210:CDS |
| CATGTAGATTGTTGAAAGAG+AGG | 0.506420 | 6_1:-28212766 | Msa0881210:intron |
| GTTGAAAGAGAGGCTGAAGC+TGG | 0.508534 | 6_1:-28212756 | Msa0881210:CDS |
| TTTCAAGGCGAAACTCGCCT+TGG | 0.515735 | 6_1:-28210252 | Msa0881210:three_prime_UTR |
| CTGCCATGGACAGCTCTAGC+AGG | 0.525991 | 6_1:-28210666 | Msa0881210:CDS |
| GCTGAAGCTGGAGGAAGTCT+CGG | 0.540570 | 6_1:-28212744 | Msa0881210:CDS |
| TCTGGAGCATCAGCACTGAC+AGG | 0.540615 | 6_1:-28210401 | Msa0881210:CDS |
| TGGATTCGTATGAGATTGAA+GGG | 0.556021 | 6_1:-28212716 | Msa0881210:CDS |
| GAGAATGCCTGCAGTGAGCA+AGG | 0.566041 | 6_1:-28210700 | Msa0881210:CDS |
| AAAGATACCTATTATAAGTG+AGG | 0.568709 | 6_1:+28210614 | None:intergenic |
| AAGATACCTATTATAAGTGA+GGG | 0.587593 | 6_1:+28210615 | None:intergenic |
| GGTCATGTTCAATGCGGTGT+TGG | 0.590854 | 6_1:-28210722 | Msa0881210:CDS |
| CGTTGTACAATTTCTACCAA+CGG | 0.590879 | 6_1:-28213010 | Msa0881210:CDS |
| GATAATCTCAATCAATTCAG+TGG | 0.592679 | 6_1:+28210424 | None:intergenic |
| AGGAGCAAGGATGTCTGCCA+TGG | 0.594950 | 6_1:-28210680 | Msa0881210:CDS |
| AATAACAGTTCGAGAAACAA+AGG | 0.603461 | 6_1:+28210114 | None:intergenic |
| ATTCCTGCTAGAGCTGTCCA+TGG | 0.613830 | 6_1:+28210663 | None:intergenic |
| GAAAGAGAGGCTGAAGCTGG+AGG | 0.621120 | 6_1:-28212753 | Msa0881210:CDS |
| CCTGCAGTGAGCAAGGAGCA+AGG | 0.624108 | 6_1:-28210693 | Msa0881210:CDS |
| CAGCTCTAGCAGGAATGCTG+GGG | 0.652373 | 6_1:-28210656 | Msa0881210:CDS |
| TCAAGGCGAAACTCGCCTTG+GGG | 0.669714 | 6_1:-28210250 | Msa0881210:three_prime_UTR |
| TACGCAAGAAAACTGGAACT+CGG | 0.672354 | 6_1:+28212659 | None:intergenic |
| GATAGTATAGTTGACACCGT+TGG | 0.683787 | 6_1:+28212994 | None:intergenic |
| GGATTCGTATGAGATTGAAG+GGG | 0.696951 | 6_1:-28212715 | Msa0881210:CDS |
| GATTCGTATGAGATTGAAGG+GGG | 0.707101 | 6_1:-28212714 | Msa0881210:CDS |
| CGTTGGTAGAAATTGTACAA+CGG | 0.712891 | 6_1:+28213011 | None:intergenic |
| GGTCAACCAAGAAATCCCCA+AGG | 0.723576 | 6_1:+28210235 | None:intergenic |
| TATATAGGTCATGTTCAATG+CGG | 0.738383 | 6_1:-28210728 | Msa0881210:intron |
| AATAGATGAAAGTACCTCGG+GGG | 0.741176 | 6_1:+28212972 | None:intergenic |
| ACGTGGAGTATGATGCACTG+AGG | 0.781586 | 6_1:-28213056 | Msa0881210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACGATTATTATTATAAAA+AGG | + | chr6_1:28212897-28212916 | None:intergenic | 10.0% |
| !! | TTGAAATTATATACAACATT+CGG | - | chr6_1:28211627-28211646 | Msa0881210:intron | 15.0% |
| !!! | ATACTTTATTTGTTGTATAT+AGG | - | chr6_1:28212423-28212442 | Msa0881210:intron | 15.0% |
| !! | TTATAATAATAATCGTTTCA+AGG | - | chr6_1:28212899-28212918 | Msa0881210:intron | 15.0% |
| !! | TTATTTCCAATAATAACTAT+TGG | - | chr6_1:28213029-28213048 | Msa0881210:CDS | 15.0% |
| !!! | TATTGCAAAATAAGTTTTCA+TGG | + | chr6_1:28210323-28210342 | None:intergenic | 20.0% |
| !!! | AAAACTTATTTTGCAATATC+AGG | - | chr6_1:28210325-28210344 | Msa0881210:three_prime_UTR | 20.0% |
| !! | TAGAATATAAAATGCTATCT+GGG | - | chr6_1:28210720-28210739 | Msa0881210:CDS | 20.0% |
| !! | TTAAGATGATTATGATTTCA+TGG | - | chr6_1:28210916-28210935 | Msa0881210:intron | 20.0% |
| !! | TAACTAAGTATAAATAGGTA+CGG | + | chr6_1:28211197-28211216 | None:intergenic | 20.0% |
| !! | CGAAATAACTAAGTATAAAT+AGG | + | chr6_1:28211202-28211221 | None:intergenic | 20.0% |
| !!! | TTTTGATCAAAATAGTAGAA+GGG | - | chr6_1:28211280-28211299 | Msa0881210:intron | 20.0% |
| !!! | AATTTTAAAAAATGAAGGTC+CGG | + | chr6_1:28211398-28211417 | None:intergenic | 20.0% |
| !! | AAGTATAAAAGAAACGAAAA+AGG | + | chr6_1:28211890-28211909 | None:intergenic | 20.0% |
| !! | TTTATCATTATAAACTTGAC+AGG | + | chr6_1:28212097-28212116 | None:intergenic | 20.0% |
| !! | ATAAGTATAATTTGAAAGAG+AGG | + | chr6_1:28212397-28212416 | None:intergenic | 20.0% |
| !!! | TTTAGACAAAATTTTTGTTC+TGG | - | chr6_1:28212613-28212632 | Msa0881210:intron | 20.0% |
| !!! | TTTAATAGATGAAAGTACCT+CGG | + | chr6_1:28210200-28210219 | None:intergenic | 25.0% |
| ! | CTAATTCAAATTGACGAAAT+GGG | + | chr6_1:28210586-28210605 | None:intergenic | 25.0% |
| ! | ACTAATTCAAATTGACGAAA+TGG | + | chr6_1:28210587-28210606 | None:intergenic | 25.0% |
| !! | CAGATAGCATTTTATATTCT+AGG | + | chr6_1:28210721-28210740 | None:intergenic | 25.0% |
| ! | CTAGAATATAAAATGCTATC+TGG | - | chr6_1:28210719-28210738 | Msa0881210:CDS | 25.0% |
| ! | AAAATTTGGTATAGAGAGTA+AGG | + | chr6_1:28210781-28210800 | None:intergenic | 25.0% |
| !!! | AAACTTGTTACAAAGTCAAT+AGG | + | chr6_1:28210883-28210902 | None:intergenic | 25.0% |
| ! | ATCATAATCATCTTAATGCA+AGG | + | chr6_1:28210912-28210931 | None:intergenic | 25.0% |
| ! | TGATATCACTTTACTTTCAA+AGG | - | chr6_1:28210977-28210996 | Msa0881210:intron | 25.0% |
| !! | TAGATATTTTCAAAACCACT+AGG | + | chr6_1:28211051-28211070 | None:intergenic | 25.0% |
| !! | GATCAAAAGCAAGATAATTT+TGG | + | chr6_1:28211268-28211287 | None:intergenic | 25.0% |
| !! | CTTTTGATCAAAATAGTAGA+AGG | - | chr6_1:28211279-28211298 | Msa0881210:intron | 25.0% |
| !!! | ATTTTAAAAAATGAAGGTCC+GGG | + | chr6_1:28211397-28211416 | None:intergenic | 25.0% |
| !!! | CGGCAAATTTTAAAAAATGA+AGG | + | chr6_1:28211403-28211422 | None:intergenic | 25.0% |
| !! | TTGTAGTTAGTTGATATTGT+TGG | - | chr6_1:28211681-28211700 | Msa0881210:intron | 25.0% |
| ! | ATTAGAGGATGCATATAATA+TGG | - | chr6_1:28211729-28211748 | Msa0881210:intron | 25.0% |
| ! | TTAGAGGATGCATATAATAT+GGG | - | chr6_1:28211730-28211749 | Msa0881210:intron | 25.0% |
| ! | ATAATATGGGTGAAGTAATA+AGG | - | chr6_1:28211743-28211762 | Msa0881210:intron | 25.0% |
| ! | TAATATGGGTGAAGTAATAA+GGG | - | chr6_1:28211744-28211763 | Msa0881210:intron | 25.0% |
| ! | CCAAATAAAACTATGTAGTT+GGG | + | chr6_1:28212183-28212202 | None:intergenic | 25.0% |
| ! | TCCAAATAAAACTATGTAGT+TGG | + | chr6_1:28212184-28212203 | None:intergenic | 25.0% |
| ! | AATCAATAAGCACAATATTC+AGG | + | chr6_1:28212295-28212314 | None:intergenic | 25.0% |
| ! | AAGATACCTATTATAAGTGA+GGG | + | chr6_1:28212554-28212573 | None:intergenic | 25.0% |
| ! | AAAGATACCTATTATAAGTG+AGG | + | chr6_1:28212555-28212574 | None:intergenic | 25.0% |
| ! | GTCATTGTCAAATATAATAC+AGG | + | chr6_1:28212811-28212830 | None:intergenic | 25.0% |
| ! | ATGACGATATTGAGATATAT+CGG | - | chr6_1:28212826-28212845 | Msa0881210:intron | 25.0% |
| !!! | TTGGTTTCTTTTGAAATTGT+TGG | - | chr6_1:28212849-28212868 | Msa0881210:intron | 25.0% |
| ! | AAAACAATTCCAGAAATATC+TGG | + | chr6_1:28212955-28212974 | None:intergenic | 25.0% |
| !! | TTAATAGATGAAAGTACCTC+GGG | + | chr6_1:28210199-28210218 | None:intergenic | 30.0% |
| GGGAAAAACTTCATTACAAT+AGG | + | chr6_1:28210238-28210257 | None:intergenic | 30.0% | |
| ! | ATTGTAATGAAGTTTTTCCC+AGG | - | chr6_1:28210238-28210257 | Msa0881210:three_prime_UTR | 30.0% |
| TTGACAATATTTCATGTCAG+GGG | + | chr6_1:28210265-28210284 | None:intergenic | 30.0% | |
| CTTGACAATATTTCATGTCA+GGG | + | chr6_1:28210266-28210285 | None:intergenic | 30.0% | |
| ACTTGACAATATTTCATGTC+AGG | + | chr6_1:28210267-28210286 | None:intergenic | 30.0% | |
| AGTATACAACAAAGTTTGTC+AGG | + | chr6_1:28210552-28210571 | None:intergenic | 30.0% | |
| ATTCAAAATATGACACTGCA+AGG | - | chr6_1:28210638-28210657 | Msa0881210:CDS | 30.0% | |
| TAGAGGAAAGTGAGAAAATT+TGG | + | chr6_1:28210795-28210814 | None:intergenic | 30.0% | |
| GATGATTATGATTTCATGGA+TGG | - | chr6_1:28210920-28210939 | Msa0881210:intron | 30.0% | |
| AAGTATAAATAGGTACGGTT+CGG | + | chr6_1:28211192-28211211 | None:intergenic | 30.0% | |
| GAGTATATATGAACTCTGAA+TGG | + | chr6_1:28211583-28211602 | None:intergenic | 30.0% | |
| TATATACAACATTCGGTATC+TGG | - | chr6_1:28211634-28211653 | Msa0881210:intron | 30.0% | |
| GTTAGATAACTAGTTAGAGA+CGG | - | chr6_1:28211703-28211722 | Msa0881210:intron | 30.0% | |
| TTAGATAACTAGTTAGAGAC+GGG | - | chr6_1:28211704-28211723 | Msa0881210:intron | 30.0% | |
| AATATGGGTGAAGTAATAAG+GGG | - | chr6_1:28211745-28211764 | Msa0881210:intron | 30.0% | |
| GAAAATATGAACAACACTTG+AGG | + | chr6_1:28211815-28211834 | None:intergenic | 30.0% | |
| ACTGACCATTTAATTATGAG+AGG | - | chr6_1:28211949-28211968 | Msa0881210:intron | 30.0% | |
| CTGACCATTTAATTATGAGA+GGG | - | chr6_1:28211950-28211969 | Msa0881210:intron | 30.0% | |
| !!! | CCCAACTACATAGTTTTATT+TGG | - | chr6_1:28212180-28212199 | Msa0881210:intron | 30.0% |
| CTTGTTAACACAAAAGAATC+AGG | + | chr6_1:28212254-28212273 | None:intergenic | 30.0% | |
| CTCAATAAAAAAGCAGCAAA+AGG | + | chr6_1:28212334-28212353 | None:intergenic | 30.0% | |
| TATATAGGTCATGTTCAATG+CGG | - | chr6_1:28212438-28212457 | Msa0881210:intron | 30.0% | |
| AGTTACTGATGCAATTATAC+AGG | + | chr6_1:28212644-28212663 | None:intergenic | 30.0% | |
| GATAATCTCAATCAATTCAG+TGG | + | chr6_1:28212745-28212764 | None:intergenic | 30.0% | |
| GAATTGATTGAGATTATCTC+TGG | - | chr6_1:28212747-28212766 | Msa0881210:CDS | 30.0% | |
| !!! | GGAATTGTTTTTTGATGTTG+AGG | - | chr6_1:28212964-28212983 | Msa0881210:intron | 30.0% |
| CAAAGGCCAATAGTTATTAT+TGG | + | chr6_1:28213038-28213057 | None:intergenic | 30.0% | |
| AATAACAGTTCGAGAAACAA+AGG | + | chr6_1:28213055-28213074 | None:intergenic | 30.0% | |
| ! | TGATGACATTCTGAAAAACG+TGG | - | chr6_1:28210093-28210112 | Msa0881210:three_prime_UTR | 35.0% |
| ! | CGTTGGTAGAAATTGTACAA+CGG | + | chr6_1:28210158-28210177 | None:intergenic | 35.0% |
| CGTTGTACAATTTCTACCAA+CGG | - | chr6_1:28210156-28210175 | Msa0881210:three_prime_UTR | 35.0% | |
| !! | TAATAGATGAAAGTACCTCG+GGG | + | chr6_1:28210198-28210217 | None:intergenic | 35.0% |
| TATTGTCAAGTTTCGACGTT+TGG | - | chr6_1:28210276-28210295 | Msa0881210:three_prime_UTR | 35.0% | |
| TTACATCACACCATTGAAAC+AGG | + | chr6_1:28210371-28210390 | None:intergenic | 35.0% | |
| CATGTAGATTGTTGAAAGAG+AGG | - | chr6_1:28210400-28210419 | Msa0881210:CDS | 35.0% | |
| TGGATTCGTATGAGATTGAA+GGG | - | chr6_1:28210450-28210469 | Msa0881210:intron | 35.0% | |
| ! | TATAAAATGCTATCTGGGAC+CGG | - | chr6_1:28210725-28210744 | Msa0881210:intron | 35.0% |
| ! | GCTTAATTTGATCCCTGTTA+TGG | + | chr6_1:28210759-28210778 | None:intergenic | 35.0% |
| TATTTCCAAATAGCCAGGTA+GGG | + | chr6_1:28210825-28210844 | None:intergenic | 35.0% | |
| TTATTTCCAAATAGCCAGGT+AGG | + | chr6_1:28210826-28210845 | None:intergenic | 35.0% | |
| GGAATTATTTCCAAATAGCC+AGG | + | chr6_1:28210830-28210849 | None:intergenic | 35.0% | |
| GTTACAAAGTCAATAGGAAG+CGG | + | chr6_1:28210877-28210896 | None:intergenic | 35.0% | |
| !! | AAACTGCTCTAGAATGTTCT+TGG | + | chr6_1:28210957-28210976 | None:intergenic | 35.0% |
| !!! | CATGATTTGTTGTGACCTTT+TGG | - | chr6_1:28211088-28211107 | Msa0881210:intron | 35.0% |
| ! | CTTAGTTATTTCGTCGTAGT+TGG | - | chr6_1:28211209-28211228 | Msa0881210:intron | 35.0% |
| ! | ATGTTTTATACCAACGTACC+CGG | - | chr6_1:28211376-28211395 | Msa0881210:intron | 35.0% |
| TATGAACTCTGAATGGAATG+CGG | + | chr6_1:28211576-28211595 | None:intergenic | 35.0% | |
| CTCACATATAAGCTGTAAAG+TGG | - | chr6_1:28211600-28211619 | Msa0881210:intron | 35.0% | |
| CAAGCCCTCTCATAATTAAA+TGG | + | chr6_1:28211957-28211976 | None:intergenic | 35.0% | |
| GAAGAAAAGAAACACATCAC+TGG | - | chr6_1:28212011-28212030 | Msa0881210:intron | 35.0% | |
| TAAACACCTCTTATACTGCA+GGG | - | chr6_1:28212034-28212053 | Msa0881210:intron | 35.0% | |
| GGACATACCATAACATCAAA+AGG | - | chr6_1:28212201-28212220 | Msa0881210:intron | 35.0% | |
| AAAGAATCAGGAACAAGGTT+GGG | + | chr6_1:28212242-28212261 | None:intergenic | 35.0% | |
| AAAAGAATCAGGAACAAGGT+TGG | + | chr6_1:28212243-28212262 | None:intergenic | 35.0% | |
| ACACAAAAGAATCAGGAACA+AGG | + | chr6_1:28212247-28212266 | None:intergenic | 35.0% | |
| TTGAGAACTTTGACGTTTGA+AGG | - | chr6_1:28212366-28212385 | Msa0881210:intron | 35.0% | |
| ACTGATGCAATTATACAGGA+TGG | + | chr6_1:28212640-28212659 | None:intergenic | 35.0% | |
| ! | AGACTAGTCAGTGAAATCAT+AGG | + | chr6_1:28212682-28212701 | None:intergenic | 35.0% |
| CGATATTGAGATATATCGGT+TGG | - | chr6_1:28212830-28212849 | Msa0881210:intron | 35.0% | |
| ! | CTCGAACTGTTATTTACTTG+TGG | - | chr6_1:28213061-28213080 | Msa0881210:CDS | 35.0% |
| GATAGTATAGTTGACACCGT+TGG | + | chr6_1:28210175-28210194 | None:intergenic | 40.0% | |
| !! | AATAGATGAAAGTACCTCGG+GGG | + | chr6_1:28210197-28210216 | None:intergenic | 40.0% |
| !! | GTGCTTTTTGCCTGTTTCAA+TGG | - | chr6_1:28210358-28210377 | Msa0881210:three_prime_UTR | 40.0% |
| CTGGATTCGTATGAGATTGA+AGG | - | chr6_1:28210449-28210468 | Msa0881210:intron | 40.0% | |
| GGATTCGTATGAGATTGAAG+GGG | - | chr6_1:28210451-28210470 | Msa0881210:intron | 40.0% | |
| GATTCGTATGAGATTGAAGG+GGG | - | chr6_1:28210452-28210471 | Msa0881210:intron | 40.0% | |
| TACGCAAGAAAACTGGAACT+CGG | + | chr6_1:28210510-28210529 | None:intergenic | 40.0% | |
| TTGTACGTACGCAAGAAAAC+TGG | + | chr6_1:28210517-28210536 | None:intergenic | 40.0% | |
| TTAGTCTAATTGCCGTACGT+AGG | - | chr6_1:28210602-28210621 | Msa0881210:intron | 40.0% | |
| !! | TGATTCTGAAGTCCTACGTA+CGG | + | chr6_1:28210617-28210636 | None:intergenic | 40.0% |
| ! | ATAAAATGCTATCTGGGACC+GGG | - | chr6_1:28210726-28210745 | Msa0881210:intron | 40.0% |
| ATTTCCAAATAGCCAGGTAG+GGG | + | chr6_1:28210824-28210843 | None:intergenic | 40.0% | |
| ! | ACTTTCTCTCAGAGCATTCA+AGG | - | chr6_1:28211017-28211036 | Msa0881210:intron | 40.0% |
| TTCAAGGACATGTTACCTAG+TGG | - | chr6_1:28211033-28211052 | Msa0881210:intron | 40.0% | |
| !! | GTTGTGACCTTTTGGTTACT+AGG | - | chr6_1:28211096-28211115 | Msa0881210:intron | 40.0% |
| AGAGCTTCCTAGTAACCAAA+AGG | + | chr6_1:28211106-28211125 | None:intergenic | 40.0% | |
| TTGGTGCAGCAAAAACGTAA+GGG | - | chr6_1:28211228-28211247 | Msa0881210:intron | 40.0% | |
| AAATTTGCCGTATTACGCAC+CGG | - | chr6_1:28211413-28211432 | Msa0881210:intron | 40.0% | |
| TAGCTATGATGCATAGGTAC+GGG | + | chr6_1:28211465-28211484 | None:intergenic | 40.0% | |
| CTAGCTATGATGCATAGGTA+CGG | + | chr6_1:28211466-28211485 | None:intergenic | 40.0% | |
| TATGCATCATAGCTAGGAAG+CGG | - | chr6_1:28211470-28211489 | Msa0881210:intron | 40.0% | |
| CTTCTCTTGATGCTTTCTCT+CGG | + | chr6_1:28211515-28211534 | None:intergenic | 40.0% | |
| !! | GAGAGAAAGCATCAAGAGAA+GGG | - | chr6_1:28211514-28211533 | Msa0881210:intron | 40.0% |
| AGTTAGAGACGGGAAATTAG+AGG | - | chr6_1:28211714-28211733 | Msa0881210:intron | 40.0% | |
| !!! | AGGGGTTTTGTTCTGTAGTT+TGG | - | chr6_1:28211763-28211782 | Msa0881210:intron | 40.0% |
| !!! | GGGGTTTTGTTCTGTAGTTT+GGG | - | chr6_1:28211764-28211783 | Msa0881210:intron | 40.0% |
| GTAAACACCTCTTATACTGC+AGG | - | chr6_1:28212033-28212052 | Msa0881210:intron | 40.0% | |
| ! | CTATGTAGTTGGGAGTGTAA+TGG | + | chr6_1:28212173-28212192 | None:intergenic | 40.0% |
| ! | AGATGGGCCTTTTGATGTTA+TGG | + | chr6_1:28212211-28212230 | None:intergenic | 40.0% |
| GTCTGACCCTCACTTATAAT+AGG | - | chr6_1:28212545-28212564 | Msa0881210:intron | 40.0% | |
| CTTGGTTGACCAGATATTTC+TGG | - | chr6_1:28212943-28212962 | Msa0881210:intron | 40.0% | |
| TATTTCATGTCAGGGGACCT+GGG | + | chr6_1:28210258-28210277 | None:intergenic | 45.0% | |
| ATATTTCATGTCAGGGGACC+TGG | + | chr6_1:28210259-28210278 | None:intergenic | 45.0% | |
| ! | TAAAATGCTATCTGGGACCG+GGG | - | chr6_1:28210727-28210746 | Msa0881210:intron | 45.0% |
| GTTGTGTGGAGGGATAGATA+TGG | + | chr6_1:28210851-28210870 | None:intergenic | 45.0% | |
| ATAGGAAGCGGAAAGTTGTG+TGG | + | chr6_1:28210865-28210884 | None:intergenic | 45.0% | |
| !! | TACTAGGAAGCTCTGAAGCA+TGG | - | chr6_1:28211112-28211131 | Msa0881210:intron | 45.0% |
| !! | ACTAGGAAGCTCTGAAGCAT+GGG | - | chr6_1:28211113-28211132 | Msa0881210:intron | 45.0% |
| AAGCATGGGTACTCCAAACA+TGG | - | chr6_1:28211127-28211146 | Msa0881210:intron | 45.0% | |
| ! | CTCCAAACATGGAGAAGTAC+CGG | - | chr6_1:28211138-28211157 | Msa0881210:intron | 45.0% |
| !! | TCCAAACATGGAGAAGTACC+GGG | - | chr6_1:28211139-28211158 | Msa0881210:intron | 45.0% |
| GTTGGTGCAGCAAAAACGTA+AGG | - | chr6_1:28211227-28211246 | Msa0881210:intron | 45.0% | |
| ATGATGCATAGGTACGGGTA+CGG | + | chr6_1:28211460-28211479 | None:intergenic | 45.0% | |
| CGTACCTATGCATCATAGCT+AGG | - | chr6_1:28211464-28211483 | Msa0881210:intron | 45.0% | |
| GCTTCCTAGCTATGATGCAT+AGG | + | chr6_1:28211471-28211490 | None:intergenic | 45.0% | |
| !! | CGAGAGAAAGCATCAAGAGA+AGG | - | chr6_1:28211513-28211532 | Msa0881210:intron | 45.0% |
| ! | TTGAGGCATTTGAGAGACCT+GGG | + | chr6_1:28211798-28211817 | None:intergenic | 45.0% |
| TCACAACCCTGCAGTATAAG+AGG | + | chr6_1:28212043-28212062 | None:intergenic | 45.0% | |
| CTTGACAGGTCACTACTTTG+TGG | + | chr6_1:28212083-28212102 | None:intergenic | 45.0% | |
| AGTGGTGTACTTGGACTCTT+GGG | + | chr6_1:28212143-28212162 | None:intergenic | 45.0% | |
| ! | TGTAGTTGGGAGTGTAATGG+AGG | + | chr6_1:28212170-28212189 | None:intergenic | 45.0% |
| !!! | TTGTTTATATAAATTTTATA+AGG | - | chr6_1:28211921-28211940 | Msa0881210:intron | 5.0% |
| ACGTGGAGTATGATGCACTG+AGG | - | chr6_1:28210110-28210129 | Msa0881210:three_prime_UTR | 50.0% | |
| GTCAACTATACTATCCCCCG+AGG | - | chr6_1:28210180-28210199 | Msa0881210:three_prime_UTR | 50.0% | |
| GTTGAAAGAGAGGCTGAAGC+TGG | - | chr6_1:28210410-28210429 | Msa0881210:CDS | 50.0% | |
| ACCGGGGTGAAATCCATAAC+AGG | - | chr6_1:28210743-28210762 | Msa0881210:intron | 50.0% | |
| CCCTGTTATGGATTTCACCC+CGG | + | chr6_1:28210747-28210766 | None:intergenic | 50.0% | |
| CCGGGGTGAAATCCATAACA+GGG | - | chr6_1:28210744-28210763 | Msa0881210:intron | 50.0% | |
| GAAGCGGAAAGTTGTGTGGA+GGG | + | chr6_1:28210861-28210880 | None:intergenic | 50.0% | |
| ACCCGGTACTTCTCCATGTT+TGG | + | chr6_1:28211143-28211162 | None:intergenic | 50.0% | |
| AAATGAAGGTCCGGGTACGT+TGG | + | chr6_1:28211389-28211408 | None:intergenic | 50.0% | |
| !! | ATGGGTACCGGTGCGTAATA+CGG | + | chr6_1:28211423-28211442 | None:intergenic | 50.0% |
| CTAGGAAGCGGTCAAAGCAT+AGG | - | chr6_1:28211482-28211501 | Msa0881210:intron | 50.0% | |
| GAAGCGGTCAAAGCATAGGA+AGG | - | chr6_1:28211486-28211505 | Msa0881210:intron | 50.0% | |
| CATTTGAGAGACCTGGGATC+TGG | + | chr6_1:28211792-28211811 | None:intergenic | 50.0% | |
| ! | CTTGAGGCATTTGAGAGACC+TGG | + | chr6_1:28211799-28211818 | None:intergenic | 50.0% |
| TGTACTTGGACTCTTGGGGA+AGG | + | chr6_1:28212138-28212157 | None:intergenic | 50.0% | |
| GTGGTGTACTTGGACTCTTG+GGG | + | chr6_1:28212142-28212161 | None:intergenic | 50.0% | |
| CAGTGGTGTACTTGGACTCT+TGG | + | chr6_1:28212144-28212163 | None:intergenic | 50.0% | |
| ! | AGTTGGGAGTGTAATGGAGG+AGG | + | chr6_1:28212167-28212186 | None:intergenic | 50.0% |
| AGGTTGGGCGTAGACAAGAT+GGG | + | chr6_1:28212227-28212246 | None:intergenic | 50.0% | |
| AAGGTTGGGCGTAGACAAGA+TGG | + | chr6_1:28212228-28212247 | None:intergenic | 50.0% | |
| GGTCATGTTCAATGCGGTGT+TGG | - | chr6_1:28212444-28212463 | Msa0881210:intron | 50.0% | |
| ATTCCTGCTAGAGCTGTCCA+TGG | + | chr6_1:28212506-28212525 | None:intergenic | 50.0% | |
| ! | ACAGCTCTAGCAGGAATGCT+GGG | - | chr6_1:28212509-28212528 | Msa0881210:intron | 50.0% |
| TTTCAAGGCGAAACTCGCCT+TGG | - | chr6_1:28212914-28212933 | Msa0881210:intron | 50.0% | |
| TTCAAGGCGAAACTCGCCTT+GGG | - | chr6_1:28212915-28212934 | Msa0881210:intron | 50.0% | |
| AACTCGCCTTGGGGATTTCT+TGG | - | chr6_1:28212925-28212944 | Msa0881210:intron | 50.0% | |
| GGTCAACCAAGAAATCCCCA+AGG | + | chr6_1:28212934-28212953 | None:intergenic | 50.0% | |
| GAAAGAGAGGCTGAAGCTGG+AGG | - | chr6_1:28210413-28210432 | Msa0881210:CDS | 55.0% | |
| GCTGAAGCTGGAGGAAGTCT+CGG | - | chr6_1:28210422-28210441 | Msa0881210:CDS | 55.0% | |
| TGGAGGAAGTCTCGGTGAAC+TGG | - | chr6_1:28210430-28210449 | Msa0881210:CDS | 55.0% | |
| CAAATAGCCAGGTAGGGGCT+AGG | + | chr6_1:28210819-28210838 | None:intergenic | 55.0% | |
| CTAGCCCCTACCTGGCTATT+TGG | - | chr6_1:28210817-28210836 | Msa0881210:intron | 55.0% | |
| GGAAGCGGAAAGTTGTGTGG+AGG | + | chr6_1:28210862-28210881 | None:intergenic | 55.0% | |
| !! | AGAAGTACCGGGTACGCGTA+TGG | - | chr6_1:28211150-28211169 | Msa0881210:intron | 55.0% |
| ATAGGTACGGGTACGGTACC+CGG | + | chr6_1:28211453-28211472 | None:intergenic | 55.0% | |
| TAGTTTGGGAGCCAGATCCC+AGG | - | chr6_1:28211778-28211797 | Msa0881210:intron | 55.0% | |
| !! | GAAGGACGGGGTTTTTGGGA+AGG | + | chr6_1:28212120-28212139 | None:intergenic | 55.0% |
| ! | TGGGGAAGGACGGGGTTTTT+GGG | + | chr6_1:28212124-28212143 | None:intergenic | 55.0% |
| ! | TTGGGGAAGGACGGGGTTTT+TGG | + | chr6_1:28212125-28212144 | None:intergenic | 55.0% |
| TTGGACTCTTGGGGAAGGAC+GGG | + | chr6_1:28212133-28212152 | None:intergenic | 55.0% | |
| CTTGGACTCTTGGGGAAGGA+CGG | + | chr6_1:28212134-28212153 | None:intergenic | 55.0% | |
| ! | GAGTGTAATGGAGGAGGCAG+TGG | + | chr6_1:28212161-28212180 | None:intergenic | 55.0% |
| GAGAATGCCTGCAGTGAGCA+AGG | - | chr6_1:28212466-28212485 | Msa0881210:intron | 55.0% | |
| AGGAGCAAGGATGTCTGCCA+TGG | - | chr6_1:28212486-28212505 | Msa0881210:intron | 55.0% | |
| ! | GACAGCTCTAGCAGGAATGC+TGG | - | chr6_1:28212508-28212527 | Msa0881210:intron | 55.0% |
| ! | CAGCTCTAGCAGGAATGCTG+GGG | - | chr6_1:28212510-28212529 | Msa0881210:intron | 55.0% |
| !! | TCTGGAGCATCAGCACTGAC+AGG | - | chr6_1:28212765-28212784 | Msa0881210:intron | 55.0% |
| TCAAGGCGAAACTCGCCTTG+GGG | - | chr6_1:28212916-28212935 | Msa0881210:intron | 55.0% | |
| CCAGGTAGGGGCTAGGTTAG+AGG | + | chr6_1:28210812-28210831 | None:intergenic | 60.0% | |
| CCTCTAACCTAGCCCCTACC+TGG | - | chr6_1:28210809-28210828 | Msa0881210:intron | 60.0% | |
| ACGAGTGCCATACGCGTACC+CGG | + | chr6_1:28211160-28211179 | None:intergenic | 60.0% | |
| ACCGGTACCCATACCCGTAC+CGG | - | chr6_1:28211431-28211450 | Msa0881210:intron | 60.0% | |
| ACGGTACCCGGTACGGGTAT+GGG | + | chr6_1:28211441-28211460 | None:intergenic | 60.0% | |
| TACGGTACCCGGTACGGGTA+TGG | + | chr6_1:28211442-28211461 | None:intergenic | 60.0% | |
| TACGGGTACGGTACCCGGTA+CGG | + | chr6_1:28211448-28211467 | None:intergenic | 60.0% | |
| TGGACTCTTGGGGAAGGACG+GGG | + | chr6_1:28212132-28212151 | None:intergenic | 60.0% | |
| GGAGGAGGCAGTGGTGTACT+TGG | + | chr6_1:28212152-28212171 | None:intergenic | 60.0% | |
| CCTTGCTCCTTGCTCACTGC+AGG | + | chr6_1:28212476-28212495 | None:intergenic | 60.0% | |
| CCTGCAGTGAGCAAGGAGCA+AGG | - | chr6_1:28212473-28212492 | Msa0881210:intron | 60.0% | |
| ! | CTGCCATGGACAGCTCTAGC+AGG | - | chr6_1:28212500-28212519 | Msa0881210:intron | 60.0% |
| CCCGGTACGGGTATGGGTAC+CGG | + | chr6_1:28211435-28211454 | None:intergenic | 65.0% | |
| CCGGTACCCATACCCGTACC+GGG | - | chr6_1:28211432-28211451 | Msa0881210:intron | 65.0% | |
| ACGGGTACGGTACCCGGTAC+GGG | + | chr6_1:28211447-28211466 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 28210070 | 28213118 | 28210070 | ID=Msa0881210;Name=Msa0881210 |
| chr6_1 | mRNA | 28210070 | 28213118 | 28210070 | ID=Msa0881210-mRNA-1;Parent=Msa0881210;Name=Msa0881210-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|1|1|1|1|4|327|147 |
| chr6_1 | exon | 28210070 | 28210466 | 28210070 | ID=Msa0881210-mRNA-1:exon:7102;Parent=Msa0881210-mRNA-1 |
| chr6_1 | exon | 28210622 | 28210743 | 28210622 | ID=Msa0881210-mRNA-1:exon:7101;Parent=Msa0881210-mRNA-1 |
| chr6_1 | exon | 28212662 | 28212781 | 28212662 | ID=Msa0881210-mRNA-1:exon:7100;Parent=Msa0881210-mRNA-1 |
| chr6_1 | exon | 28212987 | 28213118 | 28212987 | ID=Msa0881210-mRNA-1:exon:7099;Parent=Msa0881210-mRNA-1 |
| chr6_1 | CDS | 28212987 | 28213118 | 28212987 | ID=Msa0881210-mRNA-1:cds;Parent=Msa0881210-mRNA-1 |
| chr6_1 | CDS | 28212662 | 28212781 | 28212662 | ID=Msa0881210-mRNA-1:cds;Parent=Msa0881210-mRNA-1 |
| chr6_1 | CDS | 28210622 | 28210743 | 28210622 | ID=Msa0881210-mRNA-1:cds;Parent=Msa0881210-mRNA-1 |
| chr6_1 | CDS | 28210397 | 28210466 | 28210397 | ID=Msa0881210-mRNA-1:cds;Parent=Msa0881210-mRNA-1 |
| chr6_1 | three_prime_UTR | 28210070 | 28210396 | 28210070 | ID=Msa0881210-mRNA-1:three_prime_utr;Parent=Msa0881210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
