AlfalfaGEDB | Msa0881210

M. sativa cultivar zhongmu-4 / Msa0881210

KEGG: K02136
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0030312 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0070013 GO:0071944 GO:0098796 GO:0098798 GO:0098800
PFAM: PF00231.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881210	ACJ84332.1	99.320	147	1	0	1	147	181	327	5.11e-100	300

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881210	sp\|Q96250\|ATPG3_ARATH	88.276	145	17	0	1	145	177	321	2.16e-90	268

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881210	B7FHV3	99.320	147	1	0	1	147	181	327	2.44e-100	300

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0029850	Msa0881210	-0.817219	3.694300e-52	-8.615850e-47
Msa0094940	Msa0881210	0.808668	2.765492e-50	-8.615850e-47
Msa0103490	Msa0881210	0.825748	3.958294e-54	-8.615850e-47
Msa0156310	Msa0881210	0.845330	4.344313e-59	-8.615850e-47
Msa0169820	Msa0881210	-0.811699	6.144878e-51	-8.615850e-47
Msa0183010	Msa0881210	0.829564	4.797130e-55	-8.615850e-47
Msa0226620	Msa0881210	0.801481	8.824714e-49	-8.615850e-47
Msa0230640	Msa0881210	0.862761	4.031246e-64	-8.615850e-47
Msa0260270	Msa0881210	0.805157	1.528476e-49	-8.615850e-47
Msa0344690	Msa0881210	0.826611	2.467581e-54	-8.615850e-47

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881210	MtrunA17_Chr4g0073341	99.320	147	1	0	1	147	181	327	5.91e-104	300
Msa0881210	MtrunA17_Chr3g0099081	27.429	175	89	5	6	145	176	347	3.98e-13	65.1
Msa0881210	MtrunA17_Chr2g0288451	27.841	176	92	4	3	145	200	373	2.88e-11	60.1

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881210	AT2G33040.1	88.276	145	17	0	1	145	177	321	2.19e-91	268
Msa0881210	AT4G04640.1	29.586	169	88	4	7	144	203	371	8.58e-14	67.4
Msa0881210	AT1G15700.1	27.586	174	95	3	3	145	210	383	4.67e-13	65.5

Showing 1 to 3 of 3 entries

Previous1Next

Find 51 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATTCCAGAAATATC+TGG	0.429809	6_1:+28210214	None:intergenic
AAACGATTATTATTATAAAA+AGG	0.224110	6_1:+28210272	None:intergenic
AAAGATACCTATTATAAGTG+AGG	0.568709	6_1:+28210614	None:intergenic
AACTCGCCTTGGGGATTTCT+TGG	0.218664	6_1:-28210241	Msa0881210:three_prime_UTR
AAGATACCTATTATAAGTGA+GGG	0.587593	6_1:+28210615	None:intergenic
AATAACAGTTCGAGAAACAA+AGG	0.603461	6_1:+28210114	None:intergenic
AATAGATGAAAGTACCTCGG+GGG	0.741176	6_1:+28212972	None:intergenic
ACAGCTCTAGCAGGAATGCT+GGG	0.501839	6_1:-28210657	Msa0881210:CDS
ACGTGGAGTATGATGCACTG+AGG	0.781586	6_1:-28213056	Msa0881210:CDS
AGGAGCAAGGATGTCTGCCA+TGG	0.594950	6_1:-28210680	Msa0881210:CDS

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GGGAAAAACTTCATTACAAT+AGG	+	chr6_1:28210238-28210257	None:intergenic	30.0%
TTGACAATATTTCATGTCAG+GGG	+	chr6_1:28210265-28210284	None:intergenic	30.0%
CTTGACAATATTTCATGTCA+GGG	+	chr6_1:28210266-28210285	None:intergenic	30.0%
ACTTGACAATATTTCATGTC+AGG	+	chr6_1:28210267-28210286	None:intergenic	30.0%
AGTATACAACAAAGTTTGTC+AGG	+	chr6_1:28210552-28210571	None:intergenic	30.0%
ATTCAAAATATGACACTGCA+AGG	-	chr6_1:28210638-28210657	Msa0881210:CDS	30.0%
TAGAGGAAAGTGAGAAAATT+TGG	+	chr6_1:28210795-28210814	None:intergenic	30.0%
GATGATTATGATTTCATGGA+TGG	-	chr6_1:28210920-28210939	Msa0881210:intron	30.0%
AAGTATAAATAGGTACGGTT+CGG	+	chr6_1:28211192-28211211	None:intergenic	30.0%
GAGTATATATGAACTCTGAA+TGG	+	chr6_1:28211583-28211602	None:intergenic	30.0%

Showing 1 to 10 of 221 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	28210070	28213118	28210070	ID=Msa0881210;Name=Msa0881210
chr6_1	mRNA	28210070	28213118	28210070	ID=Msa0881210-mRNA-1;Parent=Msa0881210;Name=Msa0881210-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|1\|1\|1\|1\|1\|4\|327\|147
chr6_1	exon	28210070	28210466	28210070	ID=Msa0881210-mRNA-1:exon:7102;Parent=Msa0881210-mRNA-1
chr6_1	exon	28210622	28210743	28210622	ID=Msa0881210-mRNA-1:exon:7101;Parent=Msa0881210-mRNA-1
chr6_1	exon	28212662	28212781	28212662	ID=Msa0881210-mRNA-1:exon:7100;Parent=Msa0881210-mRNA-1
chr6_1	exon	28212987	28213118	28212987	ID=Msa0881210-mRNA-1:exon:7099;Parent=Msa0881210-mRNA-1
chr6_1	CDS	28212987	28213118	28212987	ID=Msa0881210-mRNA-1:cds;Parent=Msa0881210-mRNA-1
chr6_1	CDS	28212662	28212781	28212662	ID=Msa0881210-mRNA-1:cds;Parent=Msa0881210-mRNA-1
chr6_1	CDS	28210622	28210743	28210622	ID=Msa0881210-mRNA-1:cds;Parent=Msa0881210-mRNA-1
chr6_1	CDS	28210397	28210466	28210397	ID=Msa0881210-mRNA-1:cds;Parent=Msa0881210-mRNA-1
chr6_1	three_prime_UTR	28210070	28210396	28210070	ID=Msa0881210-mRNA-1:three_prime_utr;Parent=Msa0881210-mRNA-1

Gene Sequence

>Msa0881210

TATTTTCAGGTTTCTGTCTTGGCTGATGACATTCTGAAAAACGTGGAGTATGATGCACTGAGGATTGTTTTCAACAGATTTCAATCCGTTGTACAATTTCTACCAACGGTGTCAACTATACTATCCCCCGAGATTGTTGAAAGAGAGGCTGAAGCTGGAGGAAGTCTCGGTGAACTGGATTCGTATGAGATTGAAGGGGGTGACACAAAATCAGAAATTCTTCAGAATCTGACCGAGTTCCAGTTTTCTTGCGTCATGTTCAATGCGGTGTTGGAGAATGCCTGCAGTGAGCAAGGAGCAAGGATGTCTGCCATGGACAGCTCTAGCAGGAATGCTGGGGATATGCTTGATCGTCTGACCCTCACTTATAATAGAACTCGTCAAGCATCAATTACCACTGAATTGATTGAGATTATCTCTGGAGCATCAGCACTGACAGGTTAA

Protein sequence

>Msa0881210

YFQVSVLADDILKNVEYDALRIVFNRFQSVVQFLPTVSTILSPEIVEREAEAGGSLGELDSYEIEGGDTKSEILQNLTEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALTG*