Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159400 | XP_003612224.1 | 97.113 | 485 | 12 | 2 | 1 | 485 | 1 | 483 | 0.0 | 962 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159400 | sp|Q949X7|DCDA1_ARATH | 79.202 | 476 | 97 | 2 | 12 | 485 | 9 | 484 | 0.0 | 786 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159400 | G7JXL1 | 97.113 | 485 | 12 | 2 | 1 | 485 | 1 | 483 | 0.0 | 962 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020370 | Msa0159400 | 0.804205 | 2.415777e-49 | -8.615850e-47 |
| Msa0068040 | Msa0159400 | 0.902395 | 1.013365e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159400 | MtrunA17_Chr5g0405861 | 97.113 | 485 | 12 | 2 | 1 | 485 | 1 | 483 | 0.0 | 962 |
| Msa0159400 | MtrunA17_Chr3g0143501 | 25.294 | 340 | 226 | 11 | 123 | 450 | 84 | 407 | 1.11e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159400 | AT3G14390.1 | 79.202 | 476 | 97 | 2 | 12 | 485 | 9 | 484 | 0.0 | 786 |
| Msa0159400 | AT5G11880.1 | 77.664 | 488 | 100 | 4 | 4 | 485 | 5 | 489 | 0.0 | 779 |
Find 158 sgRNAs with CRISPR-Local
Find 431 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGAGATTTGTTGTATTC+TGG | 0.140459 | 1_4:+29868292 | Msa0159400:three_prime_UTR |
| ATGGATAGGTGTATCTTTAA+TGG | 0.163164 | 1_4:+29863728 | Msa0159400:intron |
| GGTTTCTGGTGGTGGGGTTT+TGG | 0.173871 | 1_4:-29863192 | None:intergenic |
| TAATAATAATTACAAGATTT+TGG | 0.185695 | 1_4:+29863421 | Msa0159400:CDS |
| GAGGGAGAATGAGGAGGTTT+TGG | 0.188362 | 1_4:-29863121 | None:intergenic |
| TATTATTGGTTATGCTATTA+AGG | 0.194019 | 1_4:+29863397 | Msa0159400:CDS |
| TGCTCAAGAATGTGATATTT+TGG | 0.202512 | 1_4:+29868330 | Msa0159400:three_prime_UTR |
| GGGAATAAGAACTCTAAATT+TGG | 0.228344 | 1_4:+29865037 | Msa0159400:CDS |
| GAAGGGTTAACATCTATTAT+TGG | 0.248894 | 1_4:+29863383 | Msa0159400:CDS |
| CTTGAGATTTGTTGTATTCT+GGG | 0.253057 | 1_4:+29868293 | Msa0159400:three_prime_UTR |
| TGGGAAAATCTTGGAGGATT+TGG | 0.271198 | 1_4:+29863754 | Msa0159400:CDS |
| CATGACAGACATTGCTTTGC+GGG | 0.277516 | 1_4:-29862286 | None:intergenic |
| AAAAGGTTTGATGGTGGATT+TGG | 0.281356 | 1_4:-29863150 | None:intergenic |
| AGGTGTATCTTTAATGGAAA+TGG | 0.285155 | 1_4:+29863734 | Msa0159400:intron |
| AAACCAGCCAAGAAACAAAA+AGG | 0.286653 | 1_4:+29862850 | Msa0159400:intron |
| CATTGACAGTGAGTTTGATT+TGG | 0.288481 | 1_4:+29863808 | Msa0159400:CDS |
| CAGGGATGCGGCCACTATTA+TGG | 0.309551 | 1_4:+29865421 | Msa0159400:CDS |
| CACAGTATCAATTAGATCTC+TGG | 0.317391 | 1_4:-29865552 | None:intergenic |
| TTGAATATCGGTGGTGGACT+TGG | 0.318965 | 1_4:+29865491 | Msa0159400:CDS |
| TCAATTAGATCTCTGGGTTT+AGG | 0.324394 | 1_4:-29865545 | None:intergenic |
| CCTGTTGAGCTAAAGCTTGT+AGG | 0.331964 | 1_4:+29865109 | Msa0159400:CDS |
| TGTGGTGCTGTTCTTGTTAG+TGG | 0.338052 | 1_4:+29863464 | Msa0159400:CDS |
| AAGTCTCTATGATGCTTATC+AGG | 0.346969 | 1_4:+29866054 | Msa0159400:CDS |
| TTGTGAGTCTGCAGATTTCT+TGG | 0.348034 | 1_4:+29867138 | Msa0159400:CDS |
| GAAGTTGATTATTTGAATAT+CGG | 0.349143 | 1_4:+29865479 | Msa0159400:CDS |
| CCTACAAGCTTTAGCTCAAC+AGG | 0.349919 | 1_4:-29865109 | None:intergenic |
| GAATGAGTGATTGAAGGTTT+TGG | 0.353491 | 1_4:-29863081 | None:intergenic |
| TCGCAAGGTGGATGAGATTA+TGG | 0.355259 | 1_4:+29863280 | Msa0159400:CDS |
| CGTGAAAGAGAATAGAATTC+AGG | 0.361943 | 1_4:-29862317 | None:intergenic |
| GATTTGTTGTATTCTGGGTT+TGG | 0.378627 | 1_4:+29868298 | Msa0159400:three_prime_UTR |
| GTTTGGTGCAGCAGAGAAAC+AGG | 0.379519 | 1_4:-29862904 | None:intergenic |
| CTGTTGAGCTAAAGCTTGTA+GGG | 0.386673 | 1_4:+29865110 | Msa0159400:CDS |
| GAGTTTCATTTGCAGGGTAC+TGG | 0.388546 | 1_4:+29867697 | Msa0159400:intron |
| TTGGTCTTGGCTGCCGAAGC+AGG | 0.391605 | 1_4:+29863773 | Msa0159400:CDS |
| CATTGTGATTGATGGAAGTA+TGG | 0.392518 | 1_4:+29866015 | Msa0159400:CDS |
| TAATGGAAATGGGAAAATCT+TGG | 0.395242 | 1_4:+29863745 | Msa0159400:CDS |
| TTATTCCCTGTGGCAACATA+AGG | 0.396444 | 1_4:-29865022 | None:intergenic |
| GGTGTATCTTTAATGGAAAT+GGG | 0.396933 | 1_4:+29863735 | Msa0159400:intron |
| GGCTTACTGTATAGATAAAA+AGG | 0.403335 | 1_4:-29863320 | None:intergenic |
| GTAGGGGCCCACTGTCATCT+TGG | 0.405310 | 1_4:+29865127 | Msa0159400:CDS |
| GATGCGACCTCCAGAGTATT+GGG | 0.405532 | 1_4:+29867780 | Msa0159400:CDS |
| TTGGAGCATTTGAGAAGCTT+GGG | 0.405741 | 1_4:+29863440 | Msa0159400:CDS |
| ATCTCAGCATTTGCTGGGGC+TGG | 0.408539 | 1_4:-29867088 | None:intergenic |
| AAATCTGCAGACTCACAAAC+AGG | 0.410971 | 1_4:-29867133 | None:intergenic |
| AATCTTGGAGGATTTGGTCT+TGG | 0.411340 | 1_4:+29863760 | Msa0159400:CDS |
| TCATTTGCAGGGTACTGGTC+TGG | 0.412975 | 1_4:+29867702 | Msa0159400:intron |
| TTACATTCTAAATTGTCAAT+TGG | 0.413892 | 1_4:-29868502 | None:intergenic |
| CGGTGCTTATTGTATGAGTA+TGG | 0.417512 | 1_4:+29867738 | Msa0159400:CDS |
| GACCACATGCGGTTGTTTGA+TGG | 0.417915 | 1_4:+29868244 | Msa0159400:CDS |
| GTGGCAGCTGCAAGAATTGC+TGG | 0.420657 | 1_4:+29863839 | Msa0159400:CDS |
| GTTGTAATCTCAGCATTTGC+TGG | 0.429365 | 1_4:-29867094 | None:intergenic |
| TTTAAGGATAACCTTGGTAA+TGG | 0.433092 | 1_4:-29865155 | None:intergenic |
| TATTGACGAAATTCGAGCTC+AGG | 0.433675 | 1_4:+29865451 | Msa0159400:CDS |
| ATATTTCAGGTTGAAGATGA+TGG | 0.441114 | 1_4:+29868184 | Msa0159400:intron |
| CTTAAACTCGCTCTTCGTGC+TGG | 0.445679 | 1_4:+29863494 | Msa0159400:CDS |
| TTTGGAGCATTTGAGAAGCT+TGG | 0.446081 | 1_4:+29863439 | Msa0159400:CDS |
| TCTGAGAACAAAAGGTTTGA+TGG | 0.449746 | 1_4:-29863159 | None:intergenic |
| ACGAGGGCTTTGTTTGACTT+TGG | 0.450949 | 1_4:+29863007 | Msa0159400:five_prime_UTR |
| TCTGCAGATTTCTTGGGAAA+AGG | 0.451066 | 1_4:+29867145 | Msa0159400:CDS |
| GTTGACAAACACGCCTGCTT+CGG | 0.459688 | 1_4:-29863786 | None:intergenic |
| TTTCTAGTTTCAGTTTAGCA+AGG | 0.461121 | 1_4:+29868401 | Msa0159400:three_prime_UTR |
| GTCCATCCTTATGTTGCCAC+AGG | 0.463820 | 1_4:+29865016 | Msa0159400:CDS |
| TGCTTAGTTAGCCGGGTGAC+AGG | 0.464454 | 1_4:+29865965 | Msa0159400:CDS |
| CACCCGGCTAACTAAGCAAC+AGG | 0.470538 | 1_4:-29865960 | None:intergenic |
| ATTGTGTTGCTTATGTATGA+TGG | 0.471012 | 1_4:+29868455 | Msa0159400:three_prime_UTR |
| TGTGAGTCTGCAGATTTCTT+GGG | 0.472848 | 1_4:+29867139 | Msa0159400:CDS |
| ACACCTGTTGCTTAGTTAGC+CGG | 0.475968 | 1_4:+29865957 | Msa0159400:CDS |
| CAACAACAATAAACTGCACC+TGG | 0.476524 | 1_4:+29862261 | Msa0159400:five_prime_UTR |
| AGAACTGCTCTGAGAACAAA+AGG | 0.476863 | 1_4:-29863167 | None:intergenic |
| AGATGCGACCTCCAGAGTAT+TGG | 0.480794 | 1_4:+29867779 | Msa0159400:CDS |
| GAGACTTGGGCGGATAAGTT+CGG | 0.487978 | 1_4:-29866038 | None:intergenic |
| CATAGTACCTTGGCAGGAGT+TGG | 0.490280 | 1_4:-29867178 | None:intergenic |
| TTGTAATCTCAGCATTTGCT+GGG | 0.491786 | 1_4:-29867093 | None:intergenic |
| AATATAGTTGACCATAATAG+TGG | 0.493524 | 1_4:-29865432 | None:intergenic |
| CTGCAAGAATTGCTGGAAAG+AGG | 0.494994 | 1_4:+29863846 | Msa0159400:CDS |
| CATTTGAGAAGCTTGGGTTG+TGG | 0.497583 | 1_4:+29863446 | Msa0159400:CDS |
| TATACCTGCGGATCAACATC+AGG | 0.502240 | 1_4:-29863893 | None:intergenic |
| GCTGAACCAACCAACCTTGT+GGG | 0.502671 | 1_4:-29863524 | None:intergenic |
| ACAGTATCAATTAGATCTCT+GGG | 0.502707 | 1_4:-29865551 | None:intergenic |
| TGTTTCGGCAAATCCGAAGA+TGG | 0.503312 | 1_4:+29863239 | Msa0159400:CDS |
| CACCTGTTGCTTAGTTAGCC+GGG | 0.507585 | 1_4:+29865958 | Msa0159400:CDS |
| GTAGTTATTTGCTTAATCAA+AGG | 0.510522 | 1_4:+29862608 | Msa0159400:five_prime_UTR |
| GAATGGAACAAGAGTGAGAG+AGG | 0.515700 | 1_4:-29863058 | None:intergenic |
| TTTGGTGAATGAGTGATTGA+AGG | 0.517249 | 1_4:-29863087 | None:intergenic |
| TGAATATCGGTGGTGGACTT+GGG | 0.519431 | 1_4:+29865492 | Msa0159400:CDS |
| ATACATCATAGTACCTTGGC+AGG | 0.520890 | 1_4:-29867184 | None:intergenic |
| TAATCCTGATGTTGATCCGC+AGG | 0.523562 | 1_4:+29863889 | Msa0159400:CDS |
| CTTAAACTCATCATTGAACC+AGG | 0.524711 | 1_4:+29865917 | Msa0159400:CDS |
| TTCTAGTTTCAGTTTAGCAA+GGG | 0.527643 | 1_4:+29868402 | Msa0159400:three_prime_UTR |
| GCTAAACTGAAACTAGAAAG+AGG | 0.528106 | 1_4:-29868397 | None:intergenic |
| GATTATTTGAATATCGGTGG+TGG | 0.529387 | 1_4:+29865485 | Msa0159400:CDS |
| AATGATGAGTTTAAGACCAC+GGG | 0.529529 | 1_4:-29865909 | None:intergenic |
| ACAGTGTAGATAGCCATCTT+CGG | 0.530183 | 1_4:-29863252 | None:intergenic |
| TGAAGCATATAAAGATGCAT+TGG | 0.530975 | 1_4:+29863361 | Msa0159400:CDS |
| ACTTGAAGGAAATTGAAGAA+AGG | 0.532615 | 1_4:-29862342 | None:intergenic |
| ATTGACGAAATTCGAGCTCA+GGG | 0.537509 | 1_4:+29865452 | Msa0159400:CDS |
| AAGAATGGAAGATTTGAAGC+TGG | 0.538882 | 1_4:-29862566 | None:intergenic |
| CTGGTACATACCCAATACTC+TGG | 0.544316 | 1_4:-29867790 | None:intergenic |
| ACATGACAGACATTGCTTTG+CGG | 0.545373 | 1_4:-29862287 | None:intergenic |
| GACATTGCTTTGCGGGACCC+AGG | 0.545583 | 1_4:-29862279 | None:intergenic |
| TGCAAGAATTGCTGGAAAGA+GGG | 0.545638 | 1_4:+29863847 | Msa0159400:CDS |
| TGATAAGCATCATAGAGACT+TGG | 0.549432 | 1_4:-29866052 | None:intergenic |
| TGGAAATGGGAAAATCTTGG+AGG | 0.550107 | 1_4:+29863748 | Msa0159400:CDS |
| CGGGAGCTTGTTCTTTCCCG+TGG | 0.557716 | 1_4:+29865893 | Msa0159400:CDS |
| GCATATAAAGATGCATTGGA+AGG | 0.560306 | 1_4:+29863365 | Msa0159400:CDS |
| TTGGTTTCCATCACCATGGT+AGG | 0.561645 | 1_4:+29863026 | Msa0159400:exon |
| TTAGATCTCTGGGTTTAGGA+AGG | 0.566951 | 1_4:-29865541 | None:intergenic |
| GGTCTGGTTGTTCATGATGC+CGG | 0.567676 | 1_4:+29867718 | Msa0159400:CDS |
| TTGAACTGATAACTTATCTG+AGG | 0.568259 | 1_4:+29868270 | Msa0159400:exon |
| GACTTTGGTTTCCATCACCA+TGG | 0.570865 | 1_4:+29863022 | Msa0159400:exon |
| CAGATAAGTTATCAGTTCAA+AGG | 0.571098 | 1_4:-29868267 | None:intergenic |
| TCAACGTTTCTAGTAATCTG+TGG | 0.572578 | 1_4:-29863341 | None:intergenic |
| CTTCGGATTTGCCGAAACAA+TGG | 0.574491 | 1_4:-29863235 | None:intergenic |
| GGGATCGATTATTATCATGC+CGG | 0.581743 | 1_4:+29865512 | Msa0159400:CDS |
| GTGTGTGCCTACCATGGTGA+TGG | 0.585533 | 1_4:-29863033 | None:intergenic |
| TGGAACAAGAGTGAGAGAGG+AGG | 0.586623 | 1_4:-29863055 | None:intergenic |
| GATAAGCATCATAGAGACTT+GGG | 0.588452 | 1_4:-29866051 | None:intergenic |
| GGCCATCAAACAACCGCATG+TGG | 0.590295 | 1_4:-29868246 | None:intergenic |
| GTGACAGGTGTCAAAACCAA+TGG | 0.593225 | 1_4:+29865980 | Msa0159400:CDS |
| TTTGCTATAAGTGATCTCCC+TGG | 0.595091 | 1_4:-29865935 | None:intergenic |
| CACTGAGCAAAATCAGACAC+GGG | 0.595236 | 1_4:+29868209 | Msa0159400:CDS |
| TCTACACTGTGAAGGTCGCA+AGG | 0.597206 | 1_4:+29863265 | Msa0159400:CDS |
| GTGCTGGATTTGATCCCACA+AGG | 0.598718 | 1_4:+29863510 | Msa0159400:CDS |
| GAGAACAAAAGGTTTGATGG+TGG | 0.603128 | 1_4:-29863156 | None:intergenic |
| TCCCTGTGGCAACATAAGGA+TGG | 0.603229 | 1_4:-29865018 | None:intergenic |
| AAATATCACATTCTTGAGCA+AGG | 0.605301 | 1_4:-29868327 | None:intergenic |
| GGGTTTAGGAAGGACAGCAC+CGG | 0.612449 | 1_4:-29865531 | None:intergenic |
| TTAGAAATGAGAAGCTGCAG+TGG | 0.616652 | 1_4:+29865062 | Msa0159400:CDS |
| GTTGATTATTTGAATATCGG+TGG | 0.616729 | 1_4:+29865482 | Msa0159400:CDS |
| CAATGATGAGTTTAAGACCA+CGG | 0.620749 | 1_4:-29865910 | None:intergenic |
| TCACATTCTTGAGCAAGGAA+AGG | 0.622246 | 1_4:-29868322 | None:intergenic |
| CATATAAAGATGCATTGGAA+GGG | 0.626626 | 1_4:+29863366 | Msa0159400:CDS |
| GATGGCTATCTACACTGTGA+AGG | 0.629449 | 1_4:+29863257 | Msa0159400:CDS |
| GGTTGATCCAAGATGACAGT+GGG | 0.631080 | 1_4:-29865134 | None:intergenic |
| AGAACTTCCAACTCCTGCCA+AGG | 0.636769 | 1_4:+29867171 | Msa0159400:CDS |
| TTTAGAGTTCTTATTCCCTG+TGG | 0.638479 | 1_4:-29865032 | None:intergenic |
| TTTGGTGCAGCAGAGAAACA+GGG | 0.640313 | 1_4:-29862903 | None:intergenic |
| CTACAAGCTTTAGCTCAACA+GGG | 0.648489 | 1_4:-29865108 | None:intergenic |
| TCCATCCTTATGTTGCCACA+GGG | 0.649172 | 1_4:+29865017 | Msa0159400:CDS |
| CATACTCATACAATAAGCAC+CGG | 0.650287 | 1_4:-29867737 | None:intergenic |
| TCACTGAGCAAAATCAGACA+CGG | 0.653042 | 1_4:+29868208 | Msa0159400:CDS |
| AATCTGCAGACTCACAAACA+GGG | 0.656316 | 1_4:-29867132 | None:intergenic |
| TCTTGGATCAACCATTACCA+AGG | 0.656897 | 1_4:+29865144 | Msa0159400:CDS |
| ACAAAACAATCATAAAACGA+GGG | 0.669738 | 1_4:+29862991 | Msa0159400:five_prime_UTR |
| TGTAATCTCAGCATTTGCTG+GGG | 0.672495 | 1_4:-29867092 | None:intergenic |
| GTACATACCCAATACTCTGG+AGG | 0.674644 | 1_4:-29867787 | None:intergenic |
| GTTTGATTTGGAAAACATTG+TGG | 0.675214 | 1_4:+29863820 | Msa0159400:CDS |
| AACAAAACAATCATAAAACG+AGG | 0.676160 | 1_4:+29862990 | Msa0159400:five_prime_UTR |
| AACAACAATAAACTGCACCT+GGG | 0.677627 | 1_4:+29862262 | Msa0159400:five_prime_UTR |
| GAGGAGGTGTGTGCCTACCA+TGG | 0.690234 | 1_4:-29863039 | None:intergenic |
| TGTTGAGCTAAAGCTTGTAG+GGG | 0.694178 | 1_4:+29865111 | Msa0159400:CDS |
| TTGGTGCAGCAGAGAAACAG+GGG | 0.698869 | 1_4:-29862902 | None:intergenic |
| AGACATTCGAAGACCACATG+CGG | 0.704722 | 1_4:+29868233 | Msa0159400:CDS |
| TTAAACTCATCATTGAACCA+GGG | 0.707762 | 1_4:+29865918 | Msa0159400:CDS |
| AAGCATCATAGAGACTTGGG+CGG | 0.714237 | 1_4:-29866048 | None:intergenic |
| ACACTGTGAAGGTCGCAAGG+TGG | 0.722931 | 1_4:+29863268 | Msa0159400:CDS |
| TGGTTGATCCAAGATGACAG+TGG | 0.759149 | 1_4:-29865135 | None:intergenic |
| ACTGAGCAAAATCAGACACG+GGG | 0.760085 | 1_4:+29868210 | Msa0159400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAATAATTAAAAAGA+AGG | - | chr1_4:29862471-29862490 | None:intergenic | 10.0% |
| !!! | TAATAATAATTACAAGATTT+TGG | + | chr1_4:29863421-29863440 | Msa0159400:CDS | 10.0% |
| !! | AACAATAACAAAAATAATGA+AGG | - | chr1_4:29862705-29862724 | None:intergenic | 15.0% |
| !! | GATGTTTAATAATGAAATTA+AGG | + | chr1_4:29862734-29862753 | Msa0159400:intron | 15.0% |
| !!! | TATAAATGCAATTTTTGAAA+CGG | + | chr1_4:29862759-29862778 | Msa0159400:intron | 15.0% |
| !!! | TGTTTTGTTTATGTTTTTTT+TGG | - | chr1_4:29862979-29862998 | None:intergenic | 15.0% |
| !! | AAAAAAATAATCAATTAGCA+GGG | - | chr1_4:29865857-29865876 | None:intergenic | 15.0% |
| !! | TAAAAAAATAATCAATTAGC+AGG | - | chr1_4:29865858-29865877 | None:intergenic | 15.0% |
| !!! | GCTAATTGATTATTTTTTTA+CGG | + | chr1_4:29865858-29865877 | Msa0159400:intron | 15.0% |
| !!! | CTTTTTCAATGAATATTTTA+TGG | + | chr1_4:29866832-29866851 | Msa0159400:intron | 15.0% |
| !!! | TTTTCATGCATGTTTTTTTT+AGG | + | chr1_4:29862674-29862693 | Msa0159400:intron | 20.0% |
| !!! | TTTCATGCATGTTTTTTTTA+GGG | + | chr1_4:29862675-29862694 | Msa0159400:intron | 20.0% |
| !!! | TATTATTGGTTATGCTATTA+AGG | + | chr1_4:29863397-29863416 | Msa0159400:CDS | 20.0% |
| !! | TTTACTTGATTATATCAAAC+TGG | + | chr1_4:29863577-29863596 | Msa0159400:intron | 20.0% |
| !!! | AATTGGTTTGTTTAATTGAT+TGG | + | chr1_4:29863636-29863655 | Msa0159400:intron | 20.0% |
| !! | TGATTTATTTATGAGATTCT+TGG | + | chr1_4:29863682-29863701 | Msa0159400:intron | 20.0% |
| !! | TTAAACATTTATTTGTCCTA+TGG | - | chr1_4:29864077-29864096 | None:intergenic | 20.0% |
| !! | AAAAATCTTCAATTTCTTCT+AGG | - | chr1_4:29864162-29864181 | None:intergenic | 20.0% |
| !! | AAATTTATCTCAAAAGAAGT+GGG | - | chr1_4:29864587-29864606 | None:intergenic | 20.0% |
| !! | AAAATTTATCTCAAAAGAAG+TGG | - | chr1_4:29864588-29864607 | None:intergenic | 20.0% |
| !!! | TTGCTTGTGAATTATTTTTT+AGG | - | chr1_4:29864745-29864764 | None:intergenic | 20.0% |
| !!! | AATGATCTTATTTATTCCTA+TGG | + | chr1_4:29864763-29864782 | Msa0159400:intron | 20.0% |
| !! | TCAATTTCATCAATTACATT+GGG | + | chr1_4:29864830-29864849 | Msa0159400:intron | 20.0% |
| !! | TATTGTGCATTTATTACTTT+AGG | + | chr1_4:29865253-29865272 | Msa0159400:intron | 20.0% |
| !!! | GAAGTTGATTATTTGAATAT+CGG | + | chr1_4:29865479-29865498 | Msa0159400:CDS | 20.0% |
| !!! | ACAAATTTAATTGTTCTGAA+GGG | - | chr1_4:29865741-29865760 | None:intergenic | 20.0% |
| !! | TACAAATTTAATTGTTCTGA+AGG | - | chr1_4:29865742-29865761 | None:intergenic | 20.0% |
| !!! | ATTGATTATTTTTTTACGGT+TGG | + | chr1_4:29865862-29865881 | Msa0159400:intron | 20.0% |
| !!! | TTATTGATGATTTATGATTG+AGG | + | chr1_4:29866321-29866340 | Msa0159400:intron | 20.0% |
| !!! | TCAATGAATATTTTATGGTT+TGG | + | chr1_4:29866837-29866856 | Msa0159400:intron | 20.0% |
| !! | TTAGAATCAAGTAACTAAAA+TGG | - | chr1_4:29866975-29866994 | None:intergenic | 20.0% |
| !! | AATAGTTGCACAAATAATAT+AGG | + | chr1_4:29867221-29867240 | Msa0159400:intron | 20.0% |
| !!! | CAAAATGATTCCTTTTAAAA+TGG | - | chr1_4:29867908-29867927 | None:intergenic | 20.0% |
| !!! | AATAATGTTTTTTCAAGCAA+AGG | - | chr1_4:29868085-29868104 | None:intergenic | 20.0% |
| !! | AAAGAAAAGACAAATATAGA+TGG | - | chr1_4:29868114-29868133 | None:intergenic | 20.0% |
| !! | GATTTCTTGTATAATATTTC+AGG | + | chr1_4:29868171-29868190 | Msa0159400:intron | 20.0% |
| !! | TTACATTCTAAATTGTCAAT+TGG | - | chr1_4:29868505-29868524 | None:intergenic | 20.0% |
| !!! | ATGTAAGCTCATTTTTAATA+AGG | + | chr1_4:29868519-29868538 | Msa0159400:three_prime_UTR | 20.0% |
| ! | TAGTGAAAGTTATTACTTGA+AGG | - | chr1_4:29862359-29862378 | None:intergenic | 25.0% |
| ! | TGCAGAAAAAATGTTAAGAA+TGG | - | chr1_4:29862584-29862603 | None:intergenic | 25.0% |
| ! | GTAGTTATTTGCTTAATCAA+AGG | + | chr1_4:29862608-29862627 | Msa0159400:five_prime_UTR | 25.0% |
| !!! | TTCATGCATGTTTTTTTTAG+GGG | + | chr1_4:29862676-29862695 | Msa0159400:intron | 25.0% |
| !!! | TTTGGTTGTTTTGTTGAAAA+GGG | - | chr1_4:29862961-29862980 | None:intergenic | 25.0% |
| !!! | TTTTGGTTGTTTTGTTGAAA+AGG | - | chr1_4:29862962-29862981 | None:intergenic | 25.0% |
| ! | AACAAAACAATCATAAAACG+AGG | + | chr1_4:29862990-29863009 | Msa0159400:five_prime_UTR | 25.0% |
| ! | ACAAAACAATCATAAAACGA+GGG | + | chr1_4:29862991-29863010 | Msa0159400:five_prime_UTR | 25.0% |
| !!! | ACTAATTTTGACCATTGTTT+CGG | + | chr1_4:29863224-29863243 | Msa0159400:CDS | 25.0% |
| !!! | TGTTTGTGTTAGTTTTTCAA+TGG | + | chr1_4:29863613-29863632 | Msa0159400:intron | 25.0% |
| !!! | TGTTAGTTTTTCAATGGAAT+TGG | + | chr1_4:29863619-29863638 | Msa0159400:intron | 25.0% |
| ! | TTGTTTAATTGATTGGAGTT+TGG | + | chr1_4:29863643-29863662 | Msa0159400:intron | 25.0% |
| !!! | TATTCCATATTTTAGCTACT+AGG | + | chr1_4:29864109-29864128 | Msa0159400:intron | 25.0% |
| ! | TATGTTTCACATATTTCTCT+TGG | + | chr1_4:29864206-29864225 | Msa0159400:intron | 25.0% |
| ! | ATATTTCTCTTGGTTATTGT+TGG | + | chr1_4:29864216-29864235 | Msa0159400:intron | 25.0% |
| ! | TAATAAAATCTGCATCACTA+TGG | - | chr1_4:29864418-29864437 | None:intergenic | 25.0% |
| ! | AATTTATCTCAAAAGAAGTG+GGG | - | chr1_4:29864586-29864605 | None:intergenic | 25.0% |
| !! | TTGAGATAAATTTTGTACGT+AGG | + | chr1_4:29864594-29864613 | Msa0159400:intron | 25.0% |
| !!! | TGTGAATTATTTTTTAGGCA+AGG | - | chr1_4:29864740-29864759 | None:intergenic | 25.0% |
| ! | CAATGTAATTGATGAAATTG+AGG | - | chr1_4:29864831-29864850 | None:intergenic | 25.0% |
| ! | CTCAATTTCATCAATTACAT+TGG | + | chr1_4:29864829-29864848 | Msa0159400:intron | 25.0% |
| !! | AGAGAAAAAGTTTTTGATGA+AGG | - | chr1_4:29864880-29864899 | None:intergenic | 25.0% |
| ! | ATAAACCAAAACATAAACCA+TGG | - | chr1_4:29864950-29864969 | None:intergenic | 25.0% |
| !! | TTTTTATCTTTGTCATCCTT+AGG | + | chr1_4:29864994-29865013 | Msa0159400:intron | 25.0% |
| !! | CAGAAAAGTAAAGACTTTTA+AGG | - | chr1_4:29865174-29865193 | None:intergenic | 25.0% |
| !!! | TCATAATATAAGTGCTGAAA+TGG | + | chr1_4:29865371-29865390 | Msa0159400:intron | 25.0% |
| ! | AATATAGTTGACCATAATAG+TGG | - | chr1_4:29865435-29865454 | None:intergenic | 25.0% |
| ! | TGTGATTAAGTTTGTAATTC+TGG | + | chr1_4:29865614-29865633 | Msa0159400:intron | 25.0% |
| !!! | AATGAAGTTTTTAGAACCAT+TGG | - | chr1_4:29865999-29866018 | None:intergenic | 25.0% |
| ! | AAAAACTTCATTGTGATTGA+TGG | + | chr1_4:29866007-29866026 | Msa0159400:CDS | 25.0% |
| !!! | GTCATTTTAAAGTGTGTATA+AGG | + | chr1_4:29866112-29866131 | Msa0159400:intron | 25.0% |
| !!! | CTGTTTTATTCTTTTTTCTC+TGG | - | chr1_4:29866281-29866300 | None:intergenic | 25.0% |
| ! | TGTTAATTGTAAGAATGAGT+AGG | - | chr1_4:29866423-29866442 | None:intergenic | 25.0% |
| ! | TTTACACTTGCACTATTTAA+GGG | - | chr1_4:29866480-29866499 | None:intergenic | 25.0% |
| ! | ATTTACACTTGCACTATTTA+AGG | - | chr1_4:29866481-29866500 | None:intergenic | 25.0% |
| !!! | TGAATATTTTATGGTTTGGT+TGG | + | chr1_4:29866841-29866860 | Msa0159400:intron | 25.0% |
| !!! | GAATATTTTATGGTTTGGTT+GGG | + | chr1_4:29866842-29866861 | Msa0159400:intron | 25.0% |
| ! | ATGTTGTGTTAACATTAACT+GGG | - | chr1_4:29866886-29866905 | None:intergenic | 25.0% |
| !! | ATTACAACTTTTGATGTAGT+CGG | + | chr1_4:29867109-29867128 | Msa0159400:CDS | 25.0% |
| !! | TAATTTGAGTTTCATTTGCA+GGG | + | chr1_4:29867691-29867710 | Msa0159400:intron | 25.0% |
| !! | TTTAGCAGAACCATTTTAAA+AGG | + | chr1_4:29867895-29867914 | Msa0159400:intron | 25.0% |
| !!! | ATTAGCTTTTTTGTTTGCAA+TGG | + | chr1_4:29868043-29868062 | Msa0159400:intron | 25.0% |
| !! | CAAGAAATCATTCTTTAAGA+CGG | - | chr1_4:29868160-29868179 | None:intergenic | 25.0% |
| ACTTGAAGGAAATTGAAGAA+AGG | - | chr1_4:29862345-29862364 | None:intergenic | 30.0% | |
| ! | GTAATCTGCATTTTGCATAT+TGG | + | chr1_4:29862403-29862422 | Msa0159400:intron | 30.0% |
| TTGCATATTGGATGCTAAAT+TGG | + | chr1_4:29862415-29862434 | Msa0159400:intron | 30.0% | |
| !! | CTCTAGTTTAATGCTATTTC+TGG | + | chr1_4:29862516-29862535 | Msa0159400:intron | 30.0% |
| !!! | AAAAGGGTTACCAGTTTTTT+GGG | - | chr1_4:29862945-29862964 | None:intergenic | 30.0% |
| ! | AATGAGTGATTGAAGGTTTT+GGG | - | chr1_4:29863083-29863102 | None:intergenic | 30.0% |
| !! | GTCAAAATTAGTGCTTTTTG+TGG | - | chr1_4:29863216-29863235 | None:intergenic | 30.0% |
| GGCTTACTGTATAGATAAAA+AGG | - | chr1_4:29863323-29863342 | None:intergenic | 30.0% | |
| TGAAGCATATAAAGATGCAT+TGG | + | chr1_4:29863361-29863380 | Msa0159400:CDS | 30.0% | |
| CATATAAAGATGCATTGGAA+GGG | + | chr1_4:29863366-29863385 | Msa0159400:CDS | 30.0% | |
| GAAGGGTTAACATCTATTAT+TGG | + | chr1_4:29863383-29863402 | Msa0159400:CDS | 30.0% | |
| CTTGATTATATCAAACTGGT+TGG | + | chr1_4:29863581-29863600 | Msa0159400:intron | 30.0% | |
| !! | GAGATTCTTGGTGTATTTTT+CGG | + | chr1_4:29863694-29863713 | Msa0159400:intron | 30.0% |
| !! | TTTTTCGGTCACTGTATTAA+TGG | + | chr1_4:29863709-29863728 | Msa0159400:intron | 30.0% |
| ATGGATAGGTGTATCTTTAA+TGG | + | chr1_4:29863728-29863747 | Msa0159400:intron | 30.0% | |
| AGGTGTATCTTTAATGGAAA+TGG | + | chr1_4:29863734-29863753 | Msa0159400:intron | 30.0% | |
| GGTGTATCTTTAATGGAAAT+GGG | + | chr1_4:29863735-29863754 | Msa0159400:intron | 30.0% | |
| TAATGGAAATGGGAAAATCT+TGG | + | chr1_4:29863745-29863764 | Msa0159400:CDS | 30.0% | |
| !! | GTTTGATTTGGAAAACATTG+TGG | + | chr1_4:29863820-29863839 | Msa0159400:CDS | 30.0% |
| ACTAAGAATCAATATACCTG+CGG | - | chr1_4:29863908-29863927 | None:intergenic | 30.0% | |
| CAATCCTAGTAGCTAAAATA+TGG | - | chr1_4:29864116-29864135 | None:intergenic | 30.0% | |
| CATAGCTTAGATGAATATCA+TGG | - | chr1_4:29864190-29864209 | None:intergenic | 30.0% | |
| CTTGGTTATTGTTGGAAAAT+TGG | + | chr1_4:29864224-29864243 | Msa0159400:intron | 30.0% | |
| ATTCAGAAATCATAGTGCAA+GGG | - | chr1_4:29864523-29864542 | None:intergenic | 30.0% | |
| AATTCAGAAATCATAGTGCA+AGG | - | chr1_4:29864524-29864543 | None:intergenic | 30.0% | |
| TGCACTATGATTTCTGAATT+TGG | + | chr1_4:29864524-29864543 | Msa0159400:intron | 30.0% | |
| ATTTATCTCAAAAGAAGTGG+GGG | - | chr1_4:29864585-29864604 | None:intergenic | 30.0% | |
| ! | ATTTTTATGTTGCTCCTACT+TGG | + | chr1_4:29864676-29864695 | Msa0159400:intron | 30.0% |
| ! | TTTTTATGTTGCTCCTACTT+GGG | + | chr1_4:29864677-29864696 | Msa0159400:intron | 30.0% |
| ATTAAAAGTTCAACCCAAGT+AGG | - | chr1_4:29864693-29864712 | None:intergenic | 30.0% | |
| GAAACGTTATTGCATTTCTT+CGG | - | chr1_4:29864718-29864737 | None:intergenic | 30.0% | |
| !! | ATTGATTGCTTTGAGATGTA+TGG | + | chr1_4:29864907-29864926 | Msa0159400:intron | 30.0% |
| GGGAATAAGAACTCTAAATT+TGG | + | chr1_4:29865037-29865056 | Msa0159400:CDS | 30.0% | |
| TTTAAGGATAACCTTGGTAA+TGG | - | chr1_4:29865158-29865177 | None:intergenic | 30.0% | |
| !! | AAGACTTTTAAGGATAACCT+TGG | - | chr1_4:29865164-29865183 | None:intergenic | 30.0% |
| TGATCCATTTATATGCTGAT+AGG | + | chr1_4:29865310-29865329 | Msa0159400:intron | 30.0% | |
| GATCCATTTATATGCTGATA+GGG | + | chr1_4:29865311-29865330 | Msa0159400:intron | 30.0% | |
| AAAATATCTACCTGGAAAGA+GGG | - | chr1_4:29865401-29865420 | None:intergenic | 30.0% | |
| ! | TTTCCAGGTAGATATTTTCA+GGG | + | chr1_4:29865403-29865422 | Msa0159400:intron | 30.0% |
| GTTGATTATTTGAATATCGG+TGG | + | chr1_4:29865482-29865501 | Msa0159400:CDS | 30.0% | |
| ACAGTATCAATTAGATCTCT+GGG | - | chr1_4:29865554-29865573 | None:intergenic | 30.0% | |
| GTAATTCTGGTACAAGAATA+AGG | + | chr1_4:29865627-29865646 | Msa0159400:intron | 30.0% | |
| TAAGGAATACCACTGATAAA+TGG | + | chr1_4:29865645-29865664 | Msa0159400:intron | 30.0% | |
| AAGGAATACCACTGATAAAT+GGG | + | chr1_4:29865646-29865665 | Msa0159400:intron | 30.0% | |
| TAAGAATTCCCATTTATCAG+TGG | - | chr1_4:29865657-29865676 | None:intergenic | 30.0% | |
| !!! | TATTTTTTTACGGTTGGAGT+AGG | + | chr1_4:29865868-29865887 | Msa0159400:intron | 30.0% |
| TTAAACTCATCATTGAACCA+GGG | + | chr1_4:29865918-29865937 | Msa0159400:CDS | 30.0% | |
| AGTGTGTATAAGGATTATGA+TGG | + | chr1_4:29866122-29866141 | Msa0159400:intron | 30.0% | |
| !! | ATTATGATGGATTCCTATGA+AGG | + | chr1_4:29866135-29866154 | Msa0159400:intron | 30.0% |
| TTGAGGAAAATTACAGAGTT+AGG | + | chr1_4:29866338-29866357 | Msa0159400:intron | 30.0% | |
| TGAGGAAAATTACAGAGTTA+GGG | + | chr1_4:29866339-29866358 | Msa0159400:intron | 30.0% | |
| TTACACTTGCACTATTTAAG+GGG | - | chr1_4:29866479-29866498 | None:intergenic | 30.0% | |
| ! | TTATTCTAGAAGGGGTAAAA+AGG | - | chr1_4:29866557-29866576 | None:intergenic | 30.0% |
| ATTCGTTATCAGCATTTGTT+AGG | - | chr1_4:29866654-29866673 | None:intergenic | 30.0% | |
| TTAACTGGGTTCACTTTAAT+TGG | - | chr1_4:29866872-29866891 | None:intergenic | 30.0% | |
| GATGTTGTGTTAACATTAAC+TGG | - | chr1_4:29866887-29866906 | None:intergenic | 30.0% | |
| ATTGCATTGTAAGAAGTTGT+TGG | + | chr1_4:29866930-29866949 | Msa0159400:intron | 30.0% | |
| ! | TTTTATGCAGCATATAGAAC+TGG | + | chr1_4:29867060-29867079 | Msa0159400:intron | 30.0% |
| ATCAATACATCATAGTACCT+TGG | - | chr1_4:29867191-29867210 | None:intergenic | 30.0% | |
| ! | ATGTCAGTGTTGTTAAATAG+CGG | + | chr1_4:29867272-29867291 | Msa0159400:intron | 30.0% |
| TTGTCAAATAGCAACTCTAA+TGG | + | chr1_4:29867366-29867385 | Msa0159400:intron | 30.0% | |
| AATTCAACGTTGTCAAATAG+CGG | + | chr1_4:29867466-29867485 | Msa0159400:intron | 30.0% | |
| TTCTCAACATTGGATAATGA+TGG | + | chr1_4:29867635-29867654 | Msa0159400:intron | 30.0% | |
| ! | CAACATCACAAACTTGTTTA+AGG | + | chr1_4:29867658-29867677 | Msa0159400:intron | 30.0% |
| ! | CTAATTTGAGTTTCATTTGC+AGG | + | chr1_4:29867690-29867709 | Msa0159400:intron | 30.0% |
| ! | GCTTTTCTAAATCTCTTCTT+AGG | + | chr1_4:29867931-29867950 | Msa0159400:intron | 30.0% |
| ! | TTTAAGACGGCAAATATTGA+TGG | - | chr1_4:29868147-29868166 | None:intergenic | 30.0% |
| !! | ATATTTCAGGTTGAAGATGA+TGG | + | chr1_4:29868184-29868203 | Msa0159400:intron | 30.0% |
| CAGATAAGTTATCAGTTCAA+AGG | - | chr1_4:29868270-29868289 | None:intergenic | 30.0% | |
| TTGAACTGATAACTTATCTG+AGG | + | chr1_4:29868270-29868289 | Msa0159400:exon | 30.0% | |
| !! | CTTGAGATTTGTTGTATTCT+GGG | + | chr1_4:29868293-29868312 | Msa0159400:three_prime_UTR | 30.0% |
| AAATATCACATTCTTGAGCA+AGG | - | chr1_4:29868330-29868349 | None:intergenic | 30.0% | |
| ! | TGCTCAAGAATGTGATATTT+TGG | + | chr1_4:29868330-29868349 | Msa0159400:three_prime_UTR | 30.0% |
| !! | TTTCTAGTTTCAGTTTAGCA+AGG | + | chr1_4:29868401-29868420 | Msa0159400:three_prime_UTR | 30.0% |
| !! | TTCTAGTTTCAGTTTAGCAA+GGG | + | chr1_4:29868402-29868421 | Msa0159400:three_prime_UTR | 30.0% |
| !! | ATTGTGTTGCTTATGTATGA+TGG | + | chr1_4:29868455-29868474 | Msa0159400:three_prime_UTR | 30.0% |
| AACAACAATAAACTGCACCT+GGG | + | chr1_4:29862262-29862281 | Msa0159400:five_prime_UTR | 35.0% | |
| CGTGAAAGAGAATAGAATTC+AGG | - | chr1_4:29862320-29862339 | None:intergenic | 35.0% | |
| ! | AAGAATGGAAGATTTGAAGC+TGG | - | chr1_4:29862569-29862588 | None:intergenic | 35.0% |
| AAACCAGCCAAGAAACAAAA+AGG | + | chr1_4:29862850-29862869 | Msa0159400:intron | 35.0% | |
| AACCAGCCAAGAAACAAAAA+GGG | + | chr1_4:29862851-29862870 | Msa0159400:intron | 35.0% | |
| GAGACAGATTAAAAAGCCAT+GGG | - | chr1_4:29862883-29862902 | None:intergenic | 35.0% | |
| GTAAATCAAGCCCAAAAAAC+TGG | + | chr1_4:29862932-29862951 | Msa0159400:intron | 35.0% | |
| !!! | GAAAAGGGTTACCAGTTTTT+TGG | - | chr1_4:29862946-29862965 | None:intergenic | 35.0% |
| ! | GAATGAGTGATTGAAGGTTT+TGG | - | chr1_4:29863084-29863103 | None:intergenic | 35.0% |
| TTTGGTGAATGAGTGATTGA+AGG | - | chr1_4:29863090-29863109 | None:intergenic | 35.0% | |
| !! | AAAAGGTTTGATGGTGGATT+TGG | - | chr1_4:29863153-29863172 | None:intergenic | 35.0% |
| TCTGAGAACAAAAGGTTTGA+TGG | - | chr1_4:29863162-29863181 | None:intergenic | 35.0% | |
| !! | TTAGTGCTTTTTGTGGTTTC+TGG | - | chr1_4:29863209-29863228 | None:intergenic | 35.0% |
| !! | TCAACGTTTCTAGTAATCTG+TGG | - | chr1_4:29863344-29863363 | None:intergenic | 35.0% |
| GCATATAAAGATGCATTGGA+AGG | + | chr1_4:29863365-29863384 | Msa0159400:CDS | 35.0% | |
| CATTGACAGTGAGTTTGATT+TGG | + | chr1_4:29863808-29863827 | Msa0159400:CDS | 35.0% | |
| AGTTTGATGCATACATCTTG+TGG | + | chr1_4:29863946-29863965 | Msa0159400:intron | 35.0% | |
| TTTAGCTACTAGGATTGATG+AGG | + | chr1_4:29864119-29864138 | Msa0159400:intron | 35.0% | |
| ! | TATTGTTGGAAAATTGGCTC+CGG | + | chr1_4:29864230-29864249 | Msa0159400:intron | 35.0% |
| AAATTCCATTAGTGCTTGGA+GGG | + | chr1_4:29864253-29864272 | Msa0159400:intron | 35.0% | |
| ! | CATAAGATGCTCCATTTTGA+AGG | - | chr1_4:29864330-29864349 | None:intergenic | 35.0% |
| ! | CTTCAAAATGGAGCATCTTA+TGG | + | chr1_4:29864328-29864347 | Msa0159400:intron | 35.0% |
| !! | TTGACCTGATTTTGAAGACT+TGG | + | chr1_4:29864363-29864382 | Msa0159400:intron | 35.0% |
| ATGTAAATAGGACACTAGCA+AGG | - | chr1_4:29864643-29864662 | None:intergenic | 35.0% | |
| ATGTGCGCTAGTATGTAAAT+AGG | - | chr1_4:29864655-29864674 | None:intergenic | 35.0% | |
| CTCTGCAGAATAAATACCAT+AGG | - | chr1_4:29864782-29864801 | None:intergenic | 35.0% | |
| ATGGTATTTATTCTGCAGAG+TGG | + | chr1_4:29864782-29864801 | Msa0159400:intron | 35.0% | |
| TGGTATTTATTCTGCAGAGT+GGG | + | chr1_4:29864783-29864802 | Msa0159400:intron | 35.0% | |
| ATTTCTAACTCTCATTGCCA+TGG | + | chr1_4:29864930-29864949 | Msa0159400:intron | 35.0% | |
| ! | CATTGCCATGGTTTATGTTT+TGG | + | chr1_4:29864942-29864961 | Msa0159400:intron | 35.0% |
| ! | TTTAGAGTTCTTATTCCCTG+TGG | - | chr1_4:29865035-29865054 | None:intergenic | 35.0% |
| ATCTTGTGCGTTATCACTTT+GGG | + | chr1_4:29865198-29865217 | Msa0159400:intron | 35.0% | |
| AGACCCTATCAGCATATAAA+TGG | - | chr1_4:29865317-29865336 | None:intergenic | 35.0% | |
| AAATATCTACCTGGAAAGAG+GGG | - | chr1_4:29865400-29865419 | None:intergenic | 35.0% | |
| GAAAATATCTACCTGGAAAG+AGG | - | chr1_4:29865402-29865421 | None:intergenic | 35.0% | |
| ! | CTTTCCAGGTAGATATTTTC+AGG | + | chr1_4:29865402-29865421 | Msa0159400:intron | 35.0% |
| GATTATTTGAATATCGGTGG+TGG | + | chr1_4:29865485-29865504 | Msa0159400:CDS | 35.0% | |
| TCAATTAGATCTCTGGGTTT+AGG | - | chr1_4:29865548-29865567 | None:intergenic | 35.0% | |
| CACAGTATCAATTAGATCTC+TGG | - | chr1_4:29865555-29865574 | None:intergenic | 35.0% | |
| GAGATCTAATTGATACTGTG+AGG | + | chr1_4:29865555-29865574 | Msa0159400:intron | 35.0% | |
| TGCATGTCACAGTTACAAAA+TGG | - | chr1_4:29865699-29865718 | None:intergenic | 35.0% | |
| ! | ATTTTGTAACTGTGACATGC+AGG | + | chr1_4:29865698-29865717 | Msa0159400:intron | 35.0% |
| ! | TTTTGTAACTGTGACATGCA+GGG | + | chr1_4:29865699-29865718 | Msa0159400:intron | 35.0% |
| ! | AATGATGAGTTTAAGACCAC+GGG | - | chr1_4:29865912-29865931 | None:intergenic | 35.0% |
| ! | CAATGATGAGTTTAAGACCA+CGG | - | chr1_4:29865913-29865932 | None:intergenic | 35.0% |
| CTTAAACTCATCATTGAACC+AGG | + | chr1_4:29865917-29865936 | Msa0159400:CDS | 35.0% | |
| CATTGTGATTGATGGAAGTA+TGG | + | chr1_4:29866015-29866034 | Msa0159400:CDS | 35.0% | |
| GATAAGCATCATAGAGACTT+GGG | - | chr1_4:29866054-29866073 | None:intergenic | 35.0% | |
| TGATAAGCATCATAGAGACT+TGG | - | chr1_4:29866055-29866074 | None:intergenic | 35.0% | |
| AAGTCTCTATGATGCTTATC+AGG | + | chr1_4:29866054-29866073 | Msa0159400:CDS | 35.0% | |
| ACAAGACAAAAGAGACTAAG+AGG | - | chr1_4:29866094-29866113 | None:intergenic | 35.0% | |
| ! | AAGTGTCTAGAATCCTTCAT+AGG | - | chr1_4:29866151-29866170 | None:intergenic | 35.0% |
| GAGGAAAATTACAGAGTTAG+GGG | + | chr1_4:29866340-29866359 | Msa0159400:intron | 35.0% | |
| AATTACAGAGTTAGGGGAAA+TGG | + | chr1_4:29866346-29866365 | Msa0159400:intron | 35.0% | |
| ATTACAGAGTTAGGGGAAAT+GGG | + | chr1_4:29866347-29866366 | Msa0159400:intron | 35.0% | |
| ! | ACTATTTAAGGGGTGTGAAT+GGG | - | chr1_4:29866469-29866488 | None:intergenic | 35.0% |
| GCAATCATTGATCCATCATA+AGG | - | chr1_4:29866605-29866624 | None:intergenic | 35.0% | |
| ! | TTATCAGCATTTGTTAGGAC+TGG | - | chr1_4:29866649-29866668 | None:intergenic | 35.0% |
| TTGCGTTGTAAAGAAGTTGT+TGG | + | chr1_4:29866716-29866735 | Msa0159400:intron | 35.0% | |
| !! | GAAGTTGTTGGAAGTTGATA+AGG | + | chr1_4:29866728-29866747 | Msa0159400:intron | 35.0% |
| ACACAAACAAAGCAGCATTA+GGG | - | chr1_4:29867003-29867022 | None:intergenic | 35.0% | |
| TTGTAATCTCAGCATTTGCT+GGG | - | chr1_4:29867096-29867115 | None:intergenic | 35.0% | |
| GCAATACACTATTCAGTACA+AGG | + | chr1_4:29867528-29867547 | Msa0159400:intron | 35.0% | |
| ACAATGCTATAGTACTCTTG+AGG | - | chr1_4:29867570-29867589 | None:intergenic | 35.0% | |
| ACTATAGCATTGTAGCATAG+AGG | + | chr1_4:29867577-29867596 | Msa0159400:intron | 35.0% | |
| CATACTCATACAATAAGCAC+CGG | - | chr1_4:29867740-29867759 | None:intergenic | 35.0% | |
| TTCTCTATAGTACGAGAAAG+CGG | + | chr1_4:29867814-29867833 | Msa0159400:intron | 35.0% | |
| ! | TGCTTGTTACACTTCATAGA+TGG | + | chr1_4:29868006-29868025 | Msa0159400:intron | 35.0% |
| !! | GCTTGAGATTTGTTGTATTC+TGG | + | chr1_4:29868292-29868311 | Msa0159400:three_prime_UTR | 35.0% |
| !! | GATTTGTTGTATTCTGGGTT+TGG | + | chr1_4:29868298-29868317 | Msa0159400:three_prime_UTR | 35.0% |
| GCTAAACTGAAACTAGAAAG+AGG | - | chr1_4:29868400-29868419 | None:intergenic | 35.0% | |
| CAACAACAATAAACTGCACC+TGG | + | chr1_4:29862261-29862280 | Msa0159400:five_prime_UTR | 40.0% | |
| ACATGACAGACATTGCTTTG+CGG | - | chr1_4:29862290-29862309 | None:intergenic | 40.0% | |
| ACCAGCCAAGAAACAAAAAG+GGG | + | chr1_4:29862852-29862871 | Msa0159400:intron | 40.0% | |
| GGAGACAGATTAAAAAGCCA+TGG | - | chr1_4:29862884-29862903 | None:intergenic | 40.0% | |
| GGCTTGATTTACAGTGTGTT+TGG | - | chr1_4:29862924-29862943 | None:intergenic | 40.0% | |
| !!! | GTGATTGAAGGTTTTGGGAA+TGG | - | chr1_4:29863078-29863097 | None:intergenic | 40.0% |
| !!! | GTTTTGGGGTAATGGGTTTT+TGG | - | chr1_4:29863108-29863127 | None:intergenic | 40.0% |
| !!! | TGGTGGATTTGGTTTTGAGA+GGG | - | chr1_4:29863142-29863161 | None:intergenic | 40.0% |
| !!! | ATGGTGGATTTGGTTTTGAG+AGG | - | chr1_4:29863143-29863162 | None:intergenic | 40.0% |
| GAGAACAAAAGGTTTGATGG+TGG | - | chr1_4:29863159-29863178 | None:intergenic | 40.0% | |
| !! | AGAACTGCTCTGAGAACAAA+AGG | - | chr1_4:29863170-29863189 | None:intergenic | 40.0% |
| !!! | TTTTTGTGGTTTCTGGTGGT+GGG | - | chr1_4:29863202-29863221 | None:intergenic | 40.0% |
| ACAGTGTAGATAGCCATCTT+CGG | - | chr1_4:29863255-29863274 | None:intergenic | 40.0% | |
| ! | TTTGGAGCATTTGAGAAGCT+TGG | + | chr1_4:29863439-29863458 | Msa0159400:CDS | 40.0% |
| ! | TTGGAGCATTTGAGAAGCTT+GGG | + | chr1_4:29863440-29863459 | Msa0159400:CDS | 40.0% |
| ! | CGGTCACTGTATTAATGGAT+AGG | + | chr1_4:29863714-29863733 | Msa0159400:intron | 40.0% |
| TGGAAATGGGAAAATCTTGG+AGG | + | chr1_4:29863748-29863767 | Msa0159400:CDS | 40.0% | |
| TGGGAAAATCTTGGAGGATT+TGG | + | chr1_4:29863754-29863773 | Msa0159400:CDS | 40.0% | |
| ! | AATCTTGGAGGATTTGGTCT+TGG | + | chr1_4:29863760-29863779 | Msa0159400:CDS | 40.0% |
| TGCAAGAATTGCTGGAAAGA+GGG | + | chr1_4:29863847-29863866 | Msa0159400:CDS | 40.0% | |
| ! | AGAGGGTGAATGTTTTGCTT+CGG | + | chr1_4:29863864-29863883 | Msa0159400:CDS | 40.0% |
| CTTCTTCGTGTCTGTCTAAA+CGG | - | chr1_4:29864051-29864070 | None:intergenic | 40.0% | |
| AGACACGAAGAAGTTTCCAT+AGG | + | chr1_4:29864058-29864077 | Msa0159400:intron | 40.0% | |
| CCAAGCACTAATGGAATTTC+CGG | - | chr1_4:29864252-29864271 | None:intergenic | 40.0% | |
| GAAATTCCATTAGTGCTTGG+AGG | + | chr1_4:29864252-29864271 | Msa0159400:intron | 40.0% | |
| TCAACTTTCACCATCCTCTT+CGG | + | chr1_4:29864302-29864321 | Msa0159400:intron | 40.0% | |
| AGATATTCCACTTCAAGCGT+TGG | + | chr1_4:29864439-29864458 | Msa0159400:intron | 40.0% | |
| GATATTCCACTTCAAGCGTT+GGG | + | chr1_4:29864440-29864459 | Msa0159400:intron | 40.0% | |
| !! | TGACAGCAAAAGTGTTAGAG+AGG | + | chr1_4:29864487-29864506 | Msa0159400:intron | 40.0% |
| TGTACGTAGGCAAGCAAATA+TGG | + | chr1_4:29864607-29864626 | Msa0159400:intron | 40.0% | |
| TGAAGGCAAAAACGAGAAGA+GGG | - | chr1_4:29864863-29864882 | None:intergenic | 40.0% | |
| ATGAAGGCAAAAACGAGAAG+AGG | - | chr1_4:29864864-29864883 | None:intergenic | 40.0% | |
| TTATTCCCTGTGGCAACATA+AGG | - | chr1_4:29865025-29865044 | None:intergenic | 40.0% | |
| TTAGAAATGAGAAGCTGCAG+TGG | + | chr1_4:29865062-29865081 | Msa0159400:CDS | 40.0% | |
| !! | GTGGTTTTTAGATGCTGTCA+AGG | + | chr1_4:29865081-29865100 | Msa0159400:CDS | 40.0% |
| ! | CTACAAGCTTTAGCTCAACA+GGG | - | chr1_4:29865111-29865130 | None:intergenic | 40.0% |
| CTGTTGAGCTAAAGCTTGTA+GGG | + | chr1_4:29865110-29865129 | Msa0159400:CDS | 40.0% | |
| TGTTGAGCTAAAGCTTGTAG+GGG | + | chr1_4:29865111-29865130 | Msa0159400:CDS | 40.0% | |
| TCTTGGATCAACCATTACCA+AGG | + | chr1_4:29865144-29865163 | Msa0159400:CDS | 40.0% | |
| CATCTTGTGCGTTATCACTT+TGG | + | chr1_4:29865197-29865216 | Msa0159400:intron | 40.0% | |
| CATCCCTGAAAATATCTACC+TGG | - | chr1_4:29865409-29865428 | None:intergenic | 40.0% | |
| !! | GGTAGATATTTTCAGGGATG+CGG | + | chr1_4:29865409-29865428 | Msa0159400:intron | 40.0% |
| TATTGACGAAATTCGAGCTC+AGG | + | chr1_4:29865451-29865470 | Msa0159400:CDS | 40.0% | |
| ATTGACGAAATTCGAGCTCA+GGG | + | chr1_4:29865452-29865471 | Msa0159400:CDS | 40.0% | |
| GGGATCGATTATTATCATGC+CGG | + | chr1_4:29865512-29865531 | Msa0159400:CDS | 40.0% | |
| TTAGATCTCTGGGTTTAGGA+AGG | - | chr1_4:29865544-29865563 | None:intergenic | 40.0% | |
| CACAAGCAGATAGAAAGAAG+CGG | - | chr1_4:29865779-29865798 | None:intergenic | 40.0% | |
| ATCTGCTTGTGAATGTCACA+TGG | + | chr1_4:29865788-29865807 | Msa0159400:intron | 40.0% | |
| ATTAGCAGGGATACTGTGAA+AGG | - | chr1_4:29865844-29865863 | None:intergenic | 40.0% | |
| ! | TTTTACGGTTGGAGTAGGTA+CGG | + | chr1_4:29865873-29865892 | Msa0159400:intron | 40.0% |
| ! | TTTGCTATAAGTGATCTCCC+TGG | - | chr1_4:29865938-29865957 | None:intergenic | 40.0% |
| ! | TTTTCTCTGGTGTGAGTTTC+TGG | - | chr1_4:29866268-29866287 | None:intergenic | 40.0% |
| ! | CTATTTAAGGGGTGTGAATG+GGG | - | chr1_4:29866468-29866487 | None:intergenic | 40.0% |
| ! | CACTATTTAAGGGGTGTGAA+TGG | - | chr1_4:29866470-29866489 | None:intergenic | 40.0% |
| ! | GAAGGGGTAAAAAGGTACAT+GGG | - | chr1_4:29866549-29866568 | None:intergenic | 40.0% |
| ! | AGAAGGGGTAAAAAGGTACA+TGG | - | chr1_4:29866550-29866569 | None:intergenic | 40.0% |
| ! | TGGCAGGTTTATTCTAGAAG+GGG | - | chr1_4:29866565-29866584 | None:intergenic | 40.0% |
| ! | GTGGCAGGTTTATTCTAGAA+GGG | - | chr1_4:29866566-29866585 | None:intergenic | 40.0% |
| TGTGGCAGGTTTATTCTAGA+AGG | - | chr1_4:29866567-29866586 | None:intergenic | 40.0% | |
| AGAATAAACCTGCCACACTT+TGG | + | chr1_4:29866570-29866589 | Msa0159400:intron | 40.0% | |
| GAATAAACCTGCCACACTTT+GGG | + | chr1_4:29866571-29866590 | Msa0159400:intron | 40.0% | |
| TTGATCCATCATAAGGCTGT+GGG | - | chr1_4:29866598-29866617 | None:intergenic | 40.0% | |
| ATTGATCCATCATAAGGCTG+TGG | - | chr1_4:29866599-29866618 | None:intergenic | 40.0% | |
| ! | TGATGGATCAATGATTGCTC+TGG | + | chr1_4:29866607-29866626 | Msa0159400:intron | 40.0% |
| ! | GGACTGGTACTAACAATGAT+GGG | - | chr1_4:29866633-29866652 | None:intergenic | 40.0% |
| ! | AGGACTGGTACTAACAATGA+TGG | - | chr1_4:29866634-29866653 | None:intergenic | 40.0% |
| ACTGCTGTGCTAACTTTAAC+TGG | - | chr1_4:29866677-29866696 | None:intergenic | 40.0% | |
| GACACAAACAAAGCAGCATT+AGG | - | chr1_4:29867004-29867023 | None:intergenic | 40.0% | |
| ! | TGTAATCTCAGCATTTGCTG+GGG | - | chr1_4:29867095-29867114 | None:intergenic | 40.0% |
| GTTGTAATCTCAGCATTTGC+TGG | - | chr1_4:29867097-29867116 | None:intergenic | 40.0% | |
| AATCTGCAGACTCACAAACA+GGG | - | chr1_4:29867135-29867154 | None:intergenic | 40.0% | |
| AAATCTGCAGACTCACAAAC+AGG | - | chr1_4:29867136-29867155 | None:intergenic | 40.0% | |
| TTGTGAGTCTGCAGATTTCT+TGG | + | chr1_4:29867138-29867157 | Msa0159400:CDS | 40.0% | |
| TGTGAGTCTGCAGATTTCTT+GGG | + | chr1_4:29867139-29867158 | Msa0159400:CDS | 40.0% | |
| TCTGCAGATTTCTTGGGAAA+AGG | + | chr1_4:29867145-29867164 | Msa0159400:CDS | 40.0% | |
| ATACATCATAGTACCTTGGC+AGG | - | chr1_4:29867187-29867206 | None:intergenic | 40.0% | |
| CGATCTGCAATTGACAACAT+TGG | + | chr1_4:29867438-29867457 | Msa0159400:intron | 40.0% | |
| CGATCTGCAATTCTCAACAT+TGG | + | chr1_4:29867625-29867644 | Msa0159400:intron | 40.0% | |
| CGGTGCTTATTGTATGAGTA+TGG | + | chr1_4:29867738-29867757 | Msa0159400:CDS | 40.0% | |
| TTCTCGTACTATAGAGAAGC+TGG | - | chr1_4:29867812-29867831 | None:intergenic | 40.0% | |
| TCACTGAGCAAAATCAGACA+CGG | + | chr1_4:29868208-29868227 | Msa0159400:CDS | 40.0% | |
| TCACATTCTTGAGCAAGGAA+AGG | - | chr1_4:29868325-29868344 | None:intergenic | 40.0% | |
| CATGACAGACATTGCTTTGC+GGG | - | chr1_4:29862289-29862308 | None:intergenic | 45.0% | |
| !! | TGGCTGGTTTGAGAAGAAAG+AGG | - | chr1_4:29862840-29862859 | None:intergenic | 45.0% |
| !! | ACCCCTTTTTGTTTCTTGGC+TGG | - | chr1_4:29862856-29862875 | None:intergenic | 45.0% |
| AGCCAAGAAACAAAAAGGGG+TGG | + | chr1_4:29862855-29862874 | Msa0159400:intron | 45.0% | |
| GCCAAGAAACAAAAAGGGGT+GGG | + | chr1_4:29862856-29862875 | Msa0159400:intron | 45.0% | |
| !! | TCCCACCCCTTTTTGTTTCT+TGG | - | chr1_4:29862860-29862879 | None:intergenic | 45.0% |
| ! | TTTGGTGCAGCAGAGAAACA+GGG | - | chr1_4:29862906-29862925 | None:intergenic | 45.0% |
| !! | ACGAGGGCTTTGTTTGACTT+TGG | + | chr1_4:29863007-29863026 | Msa0159400:five_prime_UTR | 45.0% |
| ! | GACTTTGGTTTCCATCACCA+TGG | + | chr1_4:29863022-29863041 | Msa0159400:exon | 45.0% |
| TTGGTTTCCATCACCATGGT+AGG | + | chr1_4:29863026-29863045 | Msa0159400:exon | 45.0% | |
| GAATGGAACAAGAGTGAGAG+AGG | - | chr1_4:29863061-29863080 | None:intergenic | 45.0% | |
| !!! | TGAGGAGGTTTTGGGGTAAT+GGG | - | chr1_4:29863115-29863134 | None:intergenic | 45.0% |
| !!! | ATGAGGAGGTTTTGGGGTAA+TGG | - | chr1_4:29863116-29863135 | None:intergenic | 45.0% |
| ! | AGGGAGAATGAGGAGGTTTT+GGG | - | chr1_4:29863123-29863142 | None:intergenic | 45.0% |
| !! | TTTTGAGAGGGAGAATGAGG+AGG | - | chr1_4:29863130-29863149 | None:intergenic | 45.0% |
| !!! | TGGTTTTGAGAGGGAGAATG+AGG | - | chr1_4:29863133-29863152 | None:intergenic | 45.0% |
| !!! | TTTTGTGGTTTCTGGTGGTG+GGG | - | chr1_4:29863201-29863220 | None:intergenic | 45.0% |
| !!! | CTTTTTGTGGTTTCTGGTGG+TGG | - | chr1_4:29863203-29863222 | None:intergenic | 45.0% |
| !! | GTGCTTTTTGTGGTTTCTGG+TGG | - | chr1_4:29863206-29863225 | None:intergenic | 45.0% |
| CTTCGGATTTGCCGAAACAA+TGG | - | chr1_4:29863238-29863257 | None:intergenic | 45.0% | |
| TGTTTCGGCAAATCCGAAGA+TGG | + | chr1_4:29863239-29863258 | Msa0159400:CDS | 45.0% | |
| GATGGCTATCTACACTGTGA+AGG | + | chr1_4:29863257-29863276 | Msa0159400:CDS | 45.0% | |
| TCGCAAGGTGGATGAGATTA+TGG | + | chr1_4:29863280-29863299 | Msa0159400:CDS | 45.0% | |
| ! | CATTTGAGAAGCTTGGGTTG+TGG | + | chr1_4:29863446-29863465 | Msa0159400:CDS | 45.0% |
| !! | TGTGGTGCTGTTCTTGTTAG+TGG | + | chr1_4:29863464-29863483 | Msa0159400:CDS | 45.0% |
| TGGATTTGATCCCACAAGGT+TGG | + | chr1_4:29863514-29863533 | Msa0159400:intron | 45.0% | |
| ! | TTTGATCCCACAAGGTTGGT+TGG | + | chr1_4:29863518-29863537 | Msa0159400:intron | 45.0% |
| CTGCAAGAATTGCTGGAAAG+AGG | + | chr1_4:29863846-29863865 | Msa0159400:CDS | 45.0% | |
| TAATCCTGATGTTGATCCGC+AGG | + | chr1_4:29863889-29863908 | Msa0159400:CDS | 45.0% | |
| TATACCTGCGGATCAACATC+AGG | - | chr1_4:29863896-29863915 | None:intergenic | 45.0% | |
| CCGGAAATTCCATTAGTGCT+TGG | + | chr1_4:29864249-29864268 | Msa0159400:intron | 45.0% | |
| GTGAAAGTTGAGGCTTAGTG+CGG | - | chr1_4:29864293-29864312 | None:intergenic | 45.0% | |
| GAAGAGGATGGTGAAAGTTG+AGG | - | chr1_4:29864303-29864322 | None:intergenic | 45.0% | |
| !! | TTTGAAGGTACCGAAGAGGA+TGG | - | chr1_4:29864315-29864334 | None:intergenic | 45.0% |
| !!! | CCATTTTGAAGGTACCGAAG+AGG | - | chr1_4:29864319-29864338 | None:intergenic | 45.0% |
| CCTCTTCGGTACCTTCAAAA+TGG | + | chr1_4:29864316-29864335 | Msa0159400:intron | 45.0% | |
| TGCGCCAAGTCTTCAAAATC+AGG | - | chr1_4:29864370-29864389 | None:intergenic | 45.0% | |
| CTGCATCACTATGGTTGAAG+AGG | - | chr1_4:29864409-29864428 | None:intergenic | 45.0% | |
| !! | TTTTGCTGTCAGACTCGAAG+TGG | - | chr1_4:29864478-29864497 | None:intergenic | 45.0% |
| GCAACATAAGGATGGACCTA+AGG | - | chr1_4:29865013-29865032 | None:intergenic | 45.0% | |
| TCCATCCTTATGTTGCCACA+GGG | + | chr1_4:29865017-29865036 | Msa0159400:CDS | 45.0% | |
| ! | CCTACAAGCTTTAGCTCAAC+AGG | - | chr1_4:29865112-29865131 | None:intergenic | 45.0% |
| CCTGTTGAGCTAAAGCTTGT+AGG | + | chr1_4:29865109-29865128 | Msa0159400:CDS | 45.0% | |
| GGTTGATCCAAGATGACAGT+GGG | - | chr1_4:29865137-29865156 | None:intergenic | 45.0% | |
| TGGTTGATCCAAGATGACAG+TGG | - | chr1_4:29865138-29865157 | None:intergenic | 45.0% | |
| GCTGATAGGGTCTATTTGCT+CGG | + | chr1_4:29865324-29865343 | Msa0159400:intron | 45.0% | |
| !! | TTGAATATCGGTGGTGGACT+TGG | + | chr1_4:29865491-29865510 | Msa0159400:CDS | 45.0% |
| !! | TGAATATCGGTGGTGGACTT+GGG | + | chr1_4:29865492-29865511 | Msa0159400:CDS | 45.0% |
| TTTACGGTTGGAGTAGGTAC+GGG | + | chr1_4:29865874-29865893 | Msa0159400:intron | 45.0% | |
| ! | ACACCTGTTGCTTAGTTAGC+CGG | + | chr1_4:29865957-29865976 | Msa0159400:CDS | 45.0% |
| GTGACAGGTGTCAAAACCAA+TGG | + | chr1_4:29865980-29865999 | Msa0159400:CDS | 45.0% | |
| AAGCATCATAGAGACTTGGG+CGG | - | chr1_4:29866051-29866070 | None:intergenic | 45.0% | |
| !! | CTTAGCTCTGGTCAGATCTA+GGG | - | chr1_4:29866376-29866395 | None:intergenic | 45.0% |
| AGTGACGTAGTCAAGTAGCT+TGG | - | chr1_4:29866522-29866541 | None:intergenic | 45.0% | |
| TGATCCATCATAAGGCTGTG+GGG | - | chr1_4:29866597-29866616 | None:intergenic | 45.0% | |
| GAGTTTCATTTGCAGGGTAC+TGG | + | chr1_4:29867697-29867716 | Msa0159400:intron | 45.0% | |
| GTACATACCCAATACTCTGG+AGG | - | chr1_4:29867790-29867809 | None:intergenic | 45.0% | |
| CTGGTACATACCCAATACTC+TGG | - | chr1_4:29867793-29867812 | None:intergenic | 45.0% | |
| CACTGAGCAAAATCAGACAC+GGG | + | chr1_4:29868209-29868228 | Msa0159400:CDS | 45.0% | |
| ACTGAGCAAAATCAGACACG+GGG | + | chr1_4:29868210-29868229 | Msa0159400:CDS | 45.0% | |
| AGACATTCGAAGACCACATG+CGG | + | chr1_4:29868233-29868252 | Msa0159400:CDS | 45.0% | |
| TTGGTGCAGCAGAGAAACAG+GGG | - | chr1_4:29862905-29862924 | None:intergenic | 50.0% | |
| !! | GTTTGGTGCAGCAGAGAAAC+AGG | - | chr1_4:29862907-29862926 | None:intergenic | 50.0% |
| TGGAACAAGAGTGAGAGAGG+AGG | - | chr1_4:29863058-29863077 | None:intergenic | 50.0% | |
| ! | GGGAGAATGAGGAGGTTTTG+GGG | - | chr1_4:29863122-29863141 | None:intergenic | 50.0% |
| ! | GAGGGAGAATGAGGAGGTTT+TGG | - | chr1_4:29863124-29863143 | None:intergenic | 50.0% |
| TCTACACTGTGAAGGTCGCA+AGG | + | chr1_4:29863265-29863284 | Msa0159400:CDS | 50.0% | |
| CTTAAACTCGCTCTTCGTGC+TGG | + | chr1_4:29863494-29863513 | Msa0159400:CDS | 50.0% | |
| GTGCTGGATTTGATCCCACA+AGG | + | chr1_4:29863510-29863529 | Msa0159400:CDS | 50.0% | |
| GCTGAACCAACCAACCTTGT+GGG | - | chr1_4:29863527-29863546 | None:intergenic | 50.0% | |
| AGCTGAACCAACCAACCTTG+TGG | - | chr1_4:29863528-29863547 | None:intergenic | 50.0% | |
| GTTGACAAACACGCCTGCTT+CGG | - | chr1_4:29863789-29863808 | None:intergenic | 50.0% | |
| !! | TTCCACTTCAAGCGTTGGGT+AGG | + | chr1_4:29864444-29864463 | Msa0159400:intron | 50.0% |
| !! | TCCACTTCAAGCGTTGGGTA+GGG | + | chr1_4:29864445-29864464 | Msa0159400:intron | 50.0% |
| GTCCATCCTTATGTTGCCAC+AGG | + | chr1_4:29865016-29865035 | Msa0159400:CDS | 50.0% | |
| TCCCTGTGGCAACATAAGGA+TGG | - | chr1_4:29865021-29865040 | None:intergenic | 50.0% | |
| AAATGGTTGCCCCTCTTTCC+AGG | + | chr1_4:29865388-29865407 | Msa0159400:intron | 50.0% | |
| ! | CACCTGTTGCTTAGTTAGCC+GGG | + | chr1_4:29865958-29865977 | Msa0159400:CDS | 50.0% |
| !!! | TGGTTTTGACACCTGTCACC+CGG | - | chr1_4:29865979-29865998 | None:intergenic | 50.0% |
| GAGACTTGGGCGGATAAGTT+CGG | - | chr1_4:29866041-29866060 | None:intergenic | 50.0% | |
| !! | GCTTAGCTCTGGTCAGATCT+AGG | - | chr1_4:29866377-29866396 | None:intergenic | 50.0% |
| GACCAGAGCTAAGCTCCTAT+AGG | + | chr1_4:29866383-29866402 | Msa0159400:intron | 50.0% | |
| AGCCTATAGGAGCTTAGCTC+TGG | - | chr1_4:29866388-29866407 | None:intergenic | 50.0% | |
| !! | GCAGCTCTAAGCTAGCCTAT+AGG | - | chr1_4:29866401-29866420 | None:intergenic | 50.0% |
| !! | TGGGGTTGAGAAGGGTATCT+TGG | - | chr1_4:29866450-29866469 | None:intergenic | 50.0% |
| GGTGTGAATGGGGTTGAGAA+GGG | - | chr1_4:29866458-29866477 | None:intergenic | 50.0% | |
| AGAACTTCCAACTCCTGCCA+AGG | + | chr1_4:29867171-29867190 | Msa0159400:CDS | 50.0% | |
| CATAGTACCTTGGCAGGAGT+TGG | - | chr1_4:29867181-29867200 | None:intergenic | 50.0% | |
| !! | TCATTTGCAGGGTACTGGTC+TGG | + | chr1_4:29867702-29867721 | Msa0159400:intron | 50.0% |
| GGTCTGGTTGTTCATGATGC+CGG | + | chr1_4:29867718-29867737 | Msa0159400:CDS | 50.0% | |
| AGATGCGACCTCCAGAGTAT+TGG | + | chr1_4:29867779-29867798 | Msa0159400:CDS | 50.0% | |
| ! | GATGCGACCTCCAGAGTATT+GGG | + | chr1_4:29867780-29867799 | Msa0159400:CDS | 50.0% |
| GACCACATGCGGTTGTTTGA+TGG | + | chr1_4:29868244-29868263 | Msa0159400:CDS | 50.0% | |
| ACAAAAAGGGGTGGGACCCA+TGG | + | chr1_4:29862864-29862883 | Msa0159400:five_prime_UTR | 55.0% | |
| GTGTGTGCCTACCATGGTGA+TGG | - | chr1_4:29863036-29863055 | None:intergenic | 55.0% | |
| !!! | GGTTTCTGGTGGTGGGGTTT+TGG | - | chr1_4:29863195-29863214 | None:intergenic | 55.0% |
| ACACTGTGAAGGTCGCAAGG+TGG | + | chr1_4:29863268-29863287 | Msa0159400:CDS | 55.0% | |
| GTGGCAGCTGCAAGAATTGC+TGG | + | chr1_4:29863839-29863858 | Msa0159400:CDS | 55.0% | |
| GGGATCCCTCCAAGCACTAA+TGG | - | chr1_4:29864261-29864280 | None:intergenic | 55.0% | |
| GCTTAGTGCGGATCCATGGA+GGG | - | chr1_4:29864281-29864300 | None:intergenic | 55.0% | |
| TGAGGCTTAGTGCGGATCCA+TGG | - | chr1_4:29864285-29864304 | None:intergenic | 55.0% | |
| TCCCTACCCAACGCTTGAAG+TGG | - | chr1_4:29864449-29864468 | None:intergenic | 55.0% | |
| CAGGGATGCGGCCACTATTA+TGG | + | chr1_4:29865421-29865440 | Msa0159400:CDS | 55.0% | |
| GGGTTTAGGAAGGACAGCAC+CGG | - | chr1_4:29865534-29865553 | None:intergenic | 55.0% | |
| CTGTGACATGCAGGGACATG+AGG | + | chr1_4:29865707-29865726 | Msa0159400:intron | 55.0% | |
| CACCCGGCTAACTAAGCAAC+AGG | - | chr1_4:29865963-29865982 | None:intergenic | 55.0% | |
| TGCTTAGTTAGCCGGGTGAC+AGG | + | chr1_4:29865965-29865984 | Msa0159400:CDS | 55.0% | |
| GGGTGTGAATGGGGTTGAGA+AGG | - | chr1_4:29866459-29866478 | None:intergenic | 55.0% | |
| ! | ATCTCAGCATTTGCTGGGGC+TGG | - | chr1_4:29867091-29867110 | None:intergenic | 55.0% |
| GGCCATCAAACAACCGCATG+TGG | - | chr1_4:29868249-29868268 | None:intergenic | 55.0% | |
| GACATTGCTTTGCGGGACCC+AGG | - | chr1_4:29862282-29862301 | None:intergenic | 60.0% | |
| ! | GAGGAGGTGTGTGCCTACCA+TGG | - | chr1_4:29863042-29863061 | None:intergenic | 60.0% |
| !! | TTGGTCTTGGCTGCCGAAGC+AGG | + | chr1_4:29863773-29863792 | Msa0159400:CDS | 60.0% |
| TGCTTGGAGGGATCCCTCCA+TGG | + | chr1_4:29864265-29864284 | Msa0159400:intron | 60.0% | |
| GGCTTAGTGCGGATCCATGG+AGG | - | chr1_4:29864282-29864301 | None:intergenic | 60.0% | |
| !! | TCAAGCGTTGGGTAGGGAGC+AGG | + | chr1_4:29864451-29864470 | Msa0159400:intron | 60.0% |
| GTAGGGGCCCACTGTCATCT+TGG | + | chr1_4:29865127-29865146 | Msa0159400:CDS | 60.0% | |
| ! | CGGGAGCTTGTTCTTTCCCG+TGG | + | chr1_4:29865893-29865912 | Msa0159400:CDS | 60.0% |
| ! | TGGGCCCCACAGCCTTATGA+TGG | + | chr1_4:29866590-29866609 | Msa0159400:intron | 60.0% |
| TGTGGGGCCCAAAGTGTGGC+AGG | - | chr1_4:29866581-29866600 | None:intergenic | 65.0% | |
| AGGCTGTGGGGCCCAAAGTG+TGG | - | chr1_4:29866585-29866604 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 29862235 | 29868567 | 29862235 | ID=Msa0159400;Name=Msa0159400 |
| chr1_4 | mRNA | 29862235 | 29868567 | 29862235 | ID=Msa0159400-mRNA-1;Parent=Msa0159400;Name=Msa0159400-mRNA-1;_AED=0.18;_eAED=0.18;_QI=366|1|1|1|0.7|0.63|11|294|485 |
| chr1_4 | exon | 29862235 | 29862362 | 29862235 | ID=Msa0159400-mRNA-1:exon:9587;Parent=Msa0159400-mRNA-1 |
| chr1_4 | exon | 29862553 | 29862629 | 29862553 | ID=Msa0159400-mRNA-1:exon:9588;Parent=Msa0159400-mRNA-1 |
| chr1_4 | exon | 29862857 | 29862917 | 29862857 | ID=Msa0159400-mRNA-1:exon:9589;Parent=Msa0159400-mRNA-1 |
| chr1_4 | exon | 29862941 | 29863531 | 29862941 | ID=Msa0159400-mRNA-1:exon:9590;Parent=Msa0159400-mRNA-1 |
| chr1_4 | exon | 29863736 | 29863910 | 29863736 | ID=Msa0159400-mRNA-1:exon:9591;Parent=Msa0159400-mRNA-1 |
| chr1_4 | exon | 29865016 | 29865165 | 29865016 | ID=Msa0159400-mRNA-1:exon:9592;Parent=Msa0159400-mRNA-1 |
| chr1_4 | exon | 29865410 | 29865571 | 29865410 | ID=Msa0159400-mRNA-1:exon:9593;Parent=Msa0159400-mRNA-1 |
| chr1_4 | exon | 29865890 | 29866075 | 29865890 | ID=Msa0159400-mRNA-1:exon:9594;Parent=Msa0159400-mRNA-1 |
| chr1_4 | exon | 29867070 | 29867192 | 29867070 | ID=Msa0159400-mRNA-1:exon:9595;Parent=Msa0159400-mRNA-1 |
| chr1_4 | exon | 29867712 | 29867801 | 29867712 | ID=Msa0159400-mRNA-1:exon:9596;Parent=Msa0159400-mRNA-1 |
| chr1_4 | exon | 29868193 | 29868567 | 29868193 | ID=Msa0159400-mRNA-1:exon:9597;Parent=Msa0159400-mRNA-1 |
| chr1_4 | five_prime_UTR | 29862235 | 29862362 | 29862235 | ID=Msa0159400-mRNA-1:five_prime_utr;Parent=Msa0159400-mRNA-1 |
| chr1_4 | five_prime_UTR | 29862553 | 29862629 | 29862553 | ID=Msa0159400-mRNA-1:five_prime_utr;Parent=Msa0159400-mRNA-1 |
| chr1_4 | five_prime_UTR | 29862857 | 29862917 | 29862857 | ID=Msa0159400-mRNA-1:five_prime_utr;Parent=Msa0159400-mRNA-1 |
| chr1_4 | five_prime_UTR | 29862941 | 29863040 | 29862941 | ID=Msa0159400-mRNA-1:five_prime_utr;Parent=Msa0159400-mRNA-1 |
| chr1_4 | CDS | 29863041 | 29863531 | 29863041 | ID=Msa0159400-mRNA-1:cds;Parent=Msa0159400-mRNA-1 |
| chr1_4 | CDS | 29863736 | 29863910 | 29863736 | ID=Msa0159400-mRNA-1:cds;Parent=Msa0159400-mRNA-1 |
| chr1_4 | CDS | 29865016 | 29865165 | 29865016 | ID=Msa0159400-mRNA-1:cds;Parent=Msa0159400-mRNA-1 |
| chr1_4 | CDS | 29865410 | 29865571 | 29865410 | ID=Msa0159400-mRNA-1:cds;Parent=Msa0159400-mRNA-1 |
| chr1_4 | CDS | 29865890 | 29866075 | 29865890 | ID=Msa0159400-mRNA-1:cds;Parent=Msa0159400-mRNA-1 |
| chr1_4 | CDS | 29867070 | 29867192 | 29867070 | ID=Msa0159400-mRNA-1:cds;Parent=Msa0159400-mRNA-1 |
| chr1_4 | CDS | 29867712 | 29867801 | 29867712 | ID=Msa0159400-mRNA-1:cds;Parent=Msa0159400-mRNA-1 |
| chr1_4 | CDS | 29868193 | 29868273 | 29868193 | ID=Msa0159400-mRNA-1:cds;Parent=Msa0159400-mRNA-1 |
| chr1_4 | three_prime_UTR | 29868274 | 29868567 | 29868274 | ID=Msa0159400-mRNA-1:three_prime_utr;Parent=Msa0159400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
