Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159780 | XP_024633247.1 | 92.683 | 369 | 21 | 2 | 23 | 385 | 229 | 597 | 0.0 | 702 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159780 | sp|F4J2K2|FPGS2_ARATH | 56.452 | 372 | 140 | 7 | 23 | 385 | 247 | 605 | 1.88e-134 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159780 | A0A396JWE2 | 92.683 | 369 | 21 | 2 | 23 | 385 | 229 | 597 | 0.0 | 702 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0159780 | 0.802840 | 4.633839e-49 | -8.615850e-47 |
| Msa0157290 | Msa0159780 | 0.801845 | 7.430945e-49 | -8.615850e-47 |
| Msa0159780 | Msa1014540 | 0.815957 | 7.083011e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159780 | MtrunA17_Chr1g0172381 | 92.683 | 369 | 21 | 2 | 23 | 385 | 229 | 597 | 0.0 | 702 |
| Msa0159780 | MtrunA17_Chr5g0436091 | 44.772 | 373 | 167 | 7 | 23 | 385 | 180 | 523 | 1.82e-100 | 308 |
| Msa0159780 | MtrunA17_Chr3g0112451 | 45.528 | 369 | 164 | 6 | 23 | 385 | 226 | 563 | 4.78e-93 | 290 |
| Msa0159780 | MtrunA17_Chr3g0112481 | 39.030 | 433 | 178 | 10 | 23 | 385 | 40 | 456 | 2.21e-80 | 254 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159780 | AT3G10160.1 | 56.452 | 372 | 140 | 7 | 23 | 385 | 247 | 605 | 1.91e-135 | 400 |
| Msa0159780 | AT5G05980.2 | 45.504 | 367 | 148 | 7 | 23 | 383 | 170 | 490 | 6.28e-96 | 296 |
| Msa0159780 | AT5G05980.1 | 45.504 | 367 | 148 | 8 | 23 | 383 | 228 | 548 | 3.85e-95 | 295 |
| Msa0159780 | AT3G55630.5 | 40.761 | 368 | 144 | 8 | 23 | 385 | 40 | 338 | 2.03e-78 | 246 |
| Msa0159780 | AT3G55630.1 | 40.761 | 368 | 144 | 8 | 23 | 385 | 152 | 450 | 4.88e-77 | 246 |
| Msa0159780 | AT3G55630.6 | 40.761 | 368 | 144 | 8 | 23 | 385 | 117 | 415 | 6.10e-77 | 244 |
| Msa0159780 | AT3G55630.4 | 40.761 | 368 | 144 | 8 | 23 | 385 | 117 | 415 | 6.10e-77 | 244 |
| Msa0159780 | AT3G55630.7 | 40.761 | 368 | 144 | 8 | 23 | 385 | 117 | 415 | 6.10e-77 | 244 |
| Msa0159780 | AT3G55630.2 | 40.761 | 368 | 144 | 8 | 23 | 385 | 173 | 471 | 8.39e-77 | 246 |
| Msa0159780 | AT3G55630.3 | 40.761 | 368 | 144 | 8 | 23 | 385 | 174 | 472 | 8.60e-77 | 246 |
Find 92 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTAACCTTCAAAGAATA+TGG | 0.205054 | 1_4:+31322864 | Msa0159780:CDS |
| AAAGTTAGATTGTGAGAGTT+TGG | 0.234140 | 1_4:-31319663 | None:intergenic |
| AATGATTACCATGAGTTCTT+TGG | 0.243001 | 1_4:-31320308 | None:intergenic |
| CATTGCCATTGACAATAAAA+TGG | 0.243374 | 1_4:+31323437 | Msa0159780:CDS |
| GGCTTCAGAGAACAGGAAAT+TGG | 0.275782 | 1_4:+31320866 | Msa0159780:CDS |
| GGATTAAAGTTCTGTTTATC+TGG | 0.315591 | 1_4:+31320793 | Msa0159780:CDS |
| GTCTGCGGCATTACTTCATT+GGG | 0.334439 | 1_4:+31319774 | Msa0159780:CDS |
| ATGGATCATACTGAGATATT+AGG | 0.343396 | 1_4:+31319798 | Msa0159780:CDS |
| ATCCATTGCTTCAGGAAGTT+GGG | 0.351894 | 1_4:-31320269 | None:intergenic |
| TTGCCAGATGAATTTATTAG+AGG | 0.366395 | 1_4:+31321329 | Msa0159780:CDS |
| TGTCTGCGGCATTACTTCAT+TGG | 0.371600 | 1_4:+31319773 | Msa0159780:CDS |
| AGGATAACATCCATTGCTTC+AGG | 0.379619 | 1_4:-31320277 | None:intergenic |
| TTCATTTGTTTACAATCTAA+AGG | 0.385976 | 1_4:-31320769 | None:intergenic |
| TCTACATGAGAGCAAGGCCT+TGG | 0.387852 | 1_4:+31321601 | Msa0159780:CDS |
| TCTTCTCCCATATTCTTTGA+AGG | 0.391099 | 1_4:-31322871 | None:intergenic |
| GCAGAGGAATCATCAGAAAA+TGG | 0.394869 | 1_4:+31321572 | Msa0159780:CDS |
| ACTGTGAAGGCAGGAACTTT+AGG | 0.398825 | 1_4:-31320244 | None:intergenic |
| TTTATTGTCAATGGCAATGA+AGG | 0.404522 | 1_4:-31323433 | None:intergenic |
| GAAGGTTAAATTGCCATGAT+AGG | 0.406871 | 1_4:-31322853 | None:intergenic |
| CTACATGAGAGCAAGGCCTT+GGG | 0.408374 | 1_4:+31321602 | Msa0159780:CDS |
| TATCGATCGCACTTGTCTAT+TGG | 0.409058 | 1_4:+31321539 | Msa0159780:CDS |
| TTTAGATTGTAAACAAATGA+AGG | 0.411217 | 1_4:+31320771 | Msa0159780:CDS |
| CATCCATTGCTTCAGGAAGT+TGG | 0.413740 | 1_4:-31320270 | None:intergenic |
| CTCACCTGAAGTCTTGTTGA+TGG | 0.424925 | 1_4:-31323484 | None:intergenic |
| GCACATGCATCCATGCTCTC+TGG | 0.438292 | 1_4:-31321482 | None:intergenic |
| AAGTACACTAAGGTTACTTC+TGG | 0.439062 | 1_4:+31322794 | Msa0159780:CDS |
| ATTTAACCTTCAAAGAATAT+GGG | 0.448933 | 1_4:+31322865 | Msa0159780:CDS |
| AGACCTCTAATAAATTCATC+TGG | 0.451955 | 1_4:-31321332 | None:intergenic |
| GCTTCAGAGAACAGGAAATT+GGG | 0.459715 | 1_4:+31320867 | Msa0159780:CDS |
| AGATGCTGGCTTCAGAGAAC+AGG | 0.463002 | 1_4:+31320859 | Msa0159780:CDS |
| TTTATATGATAATGCTTCAA+AGG | 0.463285 | 1_4:+31323369 | Msa0159780:CDS |
| AACCGTGGAAGCAAAATGTT+AGG | 0.465270 | 1_4:-31321957 | None:intergenic |
| CGGCATTACTTCATTGGGGA+TGG | 0.465489 | 1_4:+31319779 | Msa0159780:CDS |
| CAAGAGCAGCATTATATAGT+TGG | 0.469646 | 1_4:-31320822 | None:intergenic |
| TCGATATTTATATCCCTTTG+CGG | 0.471960 | 1_4:-31321522 | None:intergenic |
| GTTAGAAAATTCTTGTAGGC+AGG | 0.472392 | 1_4:+31321628 | Msa0159780:CDS |
| CATTGACAATAAAATGGTTG+AGG | 0.476572 | 1_4:+31323443 | Msa0159780:CDS |
| GGCTGTTAGAAAATTCTTGT+AGG | 0.480109 | 1_4:+31321624 | Msa0159780:CDS |
| TCAATGGCTGCAGGTTCCAC+TGG | 0.490841 | 1_4:+31320735 | Msa0159780:intron |
| TTATATGATAATGCTTCAAA+GGG | 0.491518 | 1_4:+31323370 | Msa0159780:CDS |
| GGCCTTGCTCTCATGTAGAA+AGG | 0.494564 | 1_4:-31321597 | None:intergenic |
| GTGAATGCATGTGCTTCGTC+AGG | 0.496330 | 1_4:+31321981 | Msa0159780:CDS |
| GCCTTGCTCTCATGTAGAAA+GGG | 0.496507 | 1_4:-31321596 | None:intergenic |
| CAGTCTCAATCTCTAGATGC+TGG | 0.502398 | 1_4:+31320845 | Msa0159780:CDS |
| GACACCAACGCTCAAGGAAA+GGG | 0.518649 | 1_4:+31319701 | Msa0159780:CDS |
| GGAGAAGATTATGCATGGGA+AGG | 0.527269 | 1_4:+31322886 | Msa0159780:CDS |
| TCACCTGAAGTCTTGTTGAT+GGG | 0.531972 | 1_4:-31323483 | None:intergenic |
| TGGTTCTCTAATGCCGCAAA+GGG | 0.533237 | 1_4:+31321509 | Msa0159780:CDS |
| ATTGACAATAAAATGGTTGA+GGG | 0.534001 | 1_4:+31323444 | Msa0159780:CDS |
| CAGATAGCATCACACAAGAC+AGG | 0.536110 | 1_4:+31320044 | Msa0159780:CDS |
| AGCTCATAGTCCAGAGAGCA+TGG | 0.536118 | 1_4:+31321472 | Msa0159780:CDS |
| ACCCCAACTTCCTGAAGCAA+TGG | 0.540551 | 1_4:+31320267 | Msa0159780:CDS |
| TGAGTTCTTTGGCCCTCTCA+AGG | 0.545094 | 1_4:-31320297 | None:intergenic |
| CGACACCAACGCTCAAGGAA+AGG | 0.545509 | 1_4:+31319700 | Msa0159780:CDS |
| GAAGTAATGCCGCAGACAGT+AGG | 0.547867 | 1_4:-31319768 | None:intergenic |
| TCAGTGGGATAGACCTATCA+TGG | 0.551648 | 1_4:+31322840 | Msa0159780:CDS |
| TTAGATTGTAAACAAATGAA+GGG | 0.552350 | 1_4:+31320772 | Msa0159780:CDS |
| GTGGTTCTCTAATGCCGCAA+AGG | 0.557622 | 1_4:+31321508 | Msa0159780:CDS |
| AATGACCACTTTGCTTGACA+AGG | 0.564323 | 1_4:+31323303 | Msa0159780:CDS |
| GAAGGTATTACTGCACTGCA+TGG | 0.571747 | 1_4:-31323415 | None:intergenic |
| TTATTCCTTCTGATCTCAGT+GGG | 0.572044 | 1_4:+31322825 | Msa0159780:CDS |
| CAAATCCTTGTCAAGCAAAG+TGG | 0.575079 | 1_4:-31323308 | None:intergenic |
| GAGAGTATGTCTGAAAATTG+TGG | 0.575351 | 1_4:+31321422 | Msa0159780:CDS |
| TCCATTGCTTCAGGAAGTTG+GGG | 0.576427 | 1_4:-31320268 | None:intergenic |
| TCTATCCCACTGAGATCAGA+AGG | 0.577065 | 1_4:-31322830 | None:intergenic |
| TGAGAGGGCCAAAGAACTCA+TGG | 0.578802 | 1_4:+31320300 | Msa0159780:CDS |
| TATGATAATGCTTCAAAGGG+AGG | 0.580173 | 1_4:+31323373 | Msa0159780:CDS |
| CAATGGATGTTATCCTTGAG+AGG | 0.580647 | 1_4:+31320284 | Msa0159780:CDS |
| AGGAAGTTGGGGTACTGTGA+AGG | 0.586551 | 1_4:-31320257 | None:intergenic |
| AGTTGGGGTACTGTGAAGGC+AGG | 0.588228 | 1_4:-31320253 | None:intergenic |
| ATATGGGAGAAGATTATGCA+TGG | 0.590117 | 1_4:+31322881 | Msa0159780:CDS |
| GTTTACGACACCAACGCTCA+AGG | 0.599779 | 1_4:+31319695 | Msa0159780:CDS |
| TACATGAGAGCAAGGCCTTG+GGG | 0.603594 | 1_4:+31321603 | Msa0159780:CDS |
| CATGGAAAATCGCTGTGGGA+AGG | 0.606122 | 1_4:-31323397 | None:intergenic |
| GAGTATGTCAAAGTACACTA+AGG | 0.606657 | 1_4:+31322784 | Msa0159780:CDS |
| AATCCTGCAGGGGATACTCT+CGG | 0.606667 | 1_4:+31320020 | Msa0159780:intron |
| AAAGGCTCAGTAACTTCCAG+TGG | 0.609530 | 1_4:-31320751 | None:intergenic |
| ATTAAAGAGCCTACTGTCTG+CGG | 0.612319 | 1_4:+31319759 | Msa0159780:CDS |
| CACTGCATGGAAAATCGCTG+TGG | 0.612514 | 1_4:-31323402 | None:intergenic |
| TCCCTTTCTACATGAGAGCA+AGG | 0.614796 | 1_4:+31321595 | Msa0159780:CDS |
| GAGAAGATTATGCATGGGAA+GGG | 0.622405 | 1_4:+31322887 | Msa0159780:CDS |
| TATGGGAGAAGATTATGCAT+GGG | 0.627145 | 1_4:+31322882 | Msa0159780:CDS |
| AATGGATGTTATCCTTGAGA+GGG | 0.634020 | 1_4:+31320285 | Msa0159780:CDS |
| TCTGCGGCATTACTTCATTG+GGG | 0.637989 | 1_4:+31319775 | Msa0159780:CDS |
| TTAGTGTACTTTGACATACT+CGG | 0.639446 | 1_4:-31322782 | None:intergenic |
| GTTATTCCTTCTGATCTCAG+TGG | 0.642171 | 1_4:+31322824 | Msa0159780:CDS |
| ACTGCATGGAAAATCGCTGT+GGG | 0.650313 | 1_4:-31323401 | None:intergenic |
| GCACATGCATTCACTAACCG+TGG | 0.656216 | 1_4:-31321972 | None:intergenic |
| TATTGGTGTAGTAAATGCAG+AGG | 0.657568 | 1_4:+31321556 | Msa0159780:intron |
| AGATAGCATCACACAAGACA+GGG | 0.660420 | 1_4:+31320045 | Msa0159780:CDS |
| AGTATGTCTGAAAATTGTGG+CGG | 0.711786 | 1_4:+31321425 | Msa0159780:CDS |
| GCATGGATGCATGTGCAAAG+TGG | 0.717898 | 1_4:+31321489 | Msa0159780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATAATTTAATATTTA+CGG | + | chr1_4:31322094-31322113 | Msa0159780:intron | 0.0% |
| !!! | TTTTATGAAATTTCTTAATT+AGG | + | chr1_4:31320568-31320587 | Msa0159780:intron | 10.0% |
| !! | TAATAATAATATCAGTAATT+AGG | + | chr1_4:31321011-31321030 | Msa0159780:intron | 10.0% |
| !!! | TAATTAGATTTTAATGATTT+TGG | + | chr1_4:31321107-31321126 | Msa0159780:intron | 10.0% |
| !! | TTAAATTATATATACAATCA+AGG | - | chr1_4:31322088-31322107 | None:intergenic | 10.0% |
| !! | AAGTAAGAAAATATATAAAA+CGG | - | chr1_4:31322665-31322684 | None:intergenic | 10.0% |
| !!! | ATTATATACTTCAAATTTTG+TGG | + | chr1_4:31319937-31319956 | Msa0159780:intron | 15.0% |
| !!! | ATTGATTTATATGTAAAGAT+AGG | + | chr1_4:31320112-31320131 | Msa0159780:intron | 15.0% |
| !! | TTATCATATAAAAATTCATG+AGG | - | chr1_4:31323361-31323380 | None:intergenic | 15.0% |
| !! | GTATATAATGAAAATTTCCT+TGG | - | chr1_4:31319926-31319945 | None:intergenic | 20.0% |
| !! | TAGAAGATAAGAAAAAACAA+TGG | - | chr1_4:31320195-31320214 | None:intergenic | 20.0% |
| !! | TAACTATGATAAATTTACGA+CGG | + | chr1_4:31320342-31320361 | Msa0159780:intron | 20.0% |
| !!! | ATACTCACTTTATTTTTCAA+TGG | - | chr1_4:31320393-31320412 | None:intergenic | 20.0% |
| !! | ATTCAAATAAAGACATAAAG+AGG | + | chr1_4:31320427-31320446 | Msa0159780:intron | 20.0% |
| !! | TGAAATTTCTTAATTAGGTT+TGG | + | chr1_4:31320573-31320592 | Msa0159780:intron | 20.0% |
| !! | TTCATTTGTTTACAATCTAA+AGG | - | chr1_4:31320772-31320791 | None:intergenic | 20.0% |
| !! | TTTAGATTGTAAACAAATGA+AGG | + | chr1_4:31320771-31320790 | Msa0159780:CDS | 20.0% |
| !! | TTAGATTGTAAACAAATGAA+GGG | + | chr1_4:31320772-31320791 | Msa0159780:CDS | 20.0% |
| !! | TTAATGAATTATGACCAATA+AGG | - | chr1_4:31320967-31320986 | None:intergenic | 20.0% |
| !! | TAATTAAACATTTCAATGTC+TGG | - | chr1_4:31321093-31321112 | None:intergenic | 20.0% |
| !!! | TAGATTTTAATGATTTTGGA+CGG | + | chr1_4:31321111-31321130 | Msa0159780:intron | 20.0% |
| !!! | TTAGTTTTTAACTGTACATT+AGG | + | chr1_4:31321289-31321308 | Msa0159780:intron | 20.0% |
| !! | ACTAAAAAAAGTTAAGAGTT+GGG | - | chr1_4:31321804-31321823 | None:intergenic | 20.0% |
| !! | GCATTATATTCTACTTTAAA+CGG | + | chr1_4:31322203-31322222 | Msa0159780:intron | 20.0% |
| !! | CAGAAAGAAATAATAAAACA+AGG | + | chr1_4:31322626-31322645 | Msa0159780:intron | 20.0% |
| !! | AGAAATAATAAAACAAGGAA+TGG | + | chr1_4:31322631-31322650 | Msa0159780:intron | 20.0% |
| !! | AATTTAACCTTCAAAGAATA+TGG | + | chr1_4:31322864-31322883 | Msa0159780:CDS | 20.0% |
| !! | ATTTAACCTTCAAAGAATAT+GGG | + | chr1_4:31322865-31322884 | Msa0159780:CDS | 20.0% |
| !!! | TAAGTTTTAAAGTTCAGTAA+CGG | + | chr1_4:31323076-31323095 | Msa0159780:intron | 20.0% |
| !!! | TTTATATGATAATGCTTCAA+AGG | + | chr1_4:31323369-31323388 | Msa0159780:CDS | 20.0% |
| !!! | TTATATGATAATGCTTCAAA+GGG | + | chr1_4:31323370-31323389 | Msa0159780:CDS | 20.0% |
| ! | TAAAATGATTAAATCCTGCA+GGG | + | chr1_4:31320009-31320028 | Msa0159780:intron | 25.0% |
| ! | TATAAATCAATGTGCAAGTT+TGG | - | chr1_4:31320103-31320122 | None:intergenic | 25.0% |
| ! | ATATGTAAAGATAGGTTTCT+TGG | + | chr1_4:31320120-31320139 | Msa0159780:intron | 25.0% |
| ! | AGGCTTTCAATTAGATAAAT+TGG | - | chr1_4:31320162-31320181 | None:intergenic | 25.0% |
| ! | AAGATAAGAAAAAACAATGG+CGG | - | chr1_4:31320192-31320211 | None:intergenic | 25.0% |
| ! | GTCGTAAATTTATCATAGTT+AGG | - | chr1_4:31320343-31320362 | None:intergenic | 25.0% |
| ! | GTCTGATATGTTATATATCA+TGG | + | chr1_4:31320603-31320622 | Msa0159780:intron | 25.0% |
| !! | TCTAGTTTAGTAGGAAATAT+AGG | + | chr1_4:31320671-31320690 | Msa0159780:intron | 25.0% |
| !! | AATATTATGCTAAGCCTTAT+TGG | + | chr1_4:31320950-31320969 | Msa0159780:intron | 25.0% |
| ! | TATTTAATGCATACCAACAA+GGG | - | chr1_4:31321066-31321085 | None:intergenic | 25.0% |
| ! | ATATTTAATGCATACCAACA+AGG | - | chr1_4:31321067-31321086 | None:intergenic | 25.0% |
| ! | AGTGAGAAAAAACAAAATAC+TGG | - | chr1_4:31321142-31321161 | None:intergenic | 25.0% |
| ! | GTTAAAAACTAAAGTCAAAG+TGG | - | chr1_4:31321281-31321300 | None:intergenic | 25.0% |
| !!! | GAGTTGATATTTTATTTGGA+CGG | + | chr1_4:31321449-31321468 | Msa0159780:CDS | 25.0% |
| ! | TTAAGCTTAACAATTGATGT+TGG | + | chr1_4:31321688-31321707 | Msa0159780:intron | 25.0% |
| ! | TAAGCTTAACAATTGATGTT+GGG | + | chr1_4:31321689-31321708 | Msa0159780:intron | 25.0% |
| ! | CTAGTATTTACTAACAAATG+GGG | - | chr1_4:31321745-31321764 | None:intergenic | 25.0% |
| ! | CCTAGTATTTACTAACAAAT+GGG | - | chr1_4:31321746-31321765 | None:intergenic | 25.0% |
| ! | TCCTAGTATTTACTAACAAA+TGG | - | chr1_4:31321747-31321766 | None:intergenic | 25.0% |
| ! | CTAAAAAAAGTTAAGAGTTG+GGG | - | chr1_4:31321803-31321822 | None:intergenic | 25.0% |
| ! | GACTAAAAAAAGTTAAGAGT+TGG | - | chr1_4:31321805-31321824 | None:intergenic | 25.0% |
| ! | ATGATCAAATACAATTCACA+TGG | - | chr1_4:31321855-31321874 | None:intergenic | 25.0% |
| ! | GTTAATCAATTATGAACATC+AGG | - | chr1_4:31321899-31321918 | None:intergenic | 25.0% |
| !!! | GTCAAAATAAAAAAAGTACC+AGG | - | chr1_4:31322025-31322044 | None:intergenic | 25.0% |
| ! | ATTATCTTTAGTTAATCTGC+TGG | + | chr1_4:31322229-31322248 | Msa0159780:intron | 25.0% |
| ! | GGAAAACATTTATGTTGTTA+TGG | + | chr1_4:31322468-31322487 | Msa0159780:intron | 25.0% |
| ! | ACATTTATGTTGTTATGGAT+AGG | + | chr1_4:31322473-31322492 | Msa0159780:intron | 25.0% |
| ! | ATGAGGTAATTATAGTAGAA+TGG | - | chr1_4:31322541-31322560 | None:intergenic | 25.0% |
| !!! | TGTGTATTATTTCTGAAATG+AGG | - | chr1_4:31322558-31322577 | None:intergenic | 25.0% |
| ! | AGAAAATATATAAAACGGTC+AGG | - | chr1_4:31322660-31322679 | None:intergenic | 25.0% |
| !! | CAAAACAATATCTCATCTTT+TGG | - | chr1_4:31323037-31323056 | None:intergenic | 25.0% |
| !! | CAAAAGATGAGATATTGTTT+TGG | + | chr1_4:31323035-31323054 | Msa0159780:intron | 25.0% |
| ! | AGTATCTTCAACTGAAATTA+AGG | - | chr1_4:31323208-31323227 | None:intergenic | 25.0% |
| ! | TACTACTATTAAGTCTTCTA+AGG | - | chr1_4:31323232-31323251 | None:intergenic | 25.0% |
| ! | AAATAAACAAAACAATGTGC+AGG | - | chr1_4:31323278-31323297 | None:intergenic | 25.0% |
| ! | TCATATAAAAATTCATGAGG+TGG | - | chr1_4:31323358-31323377 | None:intergenic | 25.0% |
| ! | ATTGACAATAAAATGGTTGA+GGG | + | chr1_4:31323444-31323463 | Msa0159780:CDS | 25.0% |
| AAAGTTAGATTGTGAGAGTT+TGG | - | chr1_4:31319666-31319685 | None:intergenic | 30.0% | |
| ATGGATCATACTGAGATATT+AGG | + | chr1_4:31319798-31319817 | Msa0159780:CDS | 30.0% | |
| !!! | ATACCACTTTTTTCGTATTG+TGG | - | chr1_4:31319988-31320007 | None:intergenic | 30.0% |
| GTAAAATGATTAAATCCTGC+AGG | + | chr1_4:31320008-31320027 | Msa0159780:intron | 30.0% | |
| AAAATGATTAAATCCTGCAG+GGG | + | chr1_4:31320010-31320029 | Msa0159780:intron | 30.0% | |
| AGATAAGAAAAAACAATGGC+GGG | - | chr1_4:31320191-31320210 | None:intergenic | 30.0% | |
| AATGATTACCATGAGTTCTT+TGG | - | chr1_4:31320311-31320330 | None:intergenic | 30.0% | |
| AGGAAATATAGGTCATTCAT+CGG | + | chr1_4:31320682-31320701 | Msa0159780:intron | 30.0% | |
| ! | GAAAACAGGCAAAGAATTTT+TGG | - | chr1_4:31320717-31320736 | None:intergenic | 30.0% |
| ! | AATTCTTTGCCTGTTTTCAA+TGG | + | chr1_4:31320719-31320738 | Msa0159780:intron | 30.0% |
| GGATTAAAGTTCTGTTTATC+TGG | + | chr1_4:31320793-31320812 | Msa0159780:CDS | 30.0% | |
| ! | TTTAATGATTTTGGACGGAT+TGG | + | chr1_4:31321116-31321135 | Msa0159780:intron | 30.0% |
| AGCATCAAACAAAGAAAGAA+GGG | - | chr1_4:31321214-31321233 | None:intergenic | 30.0% | |
| CTCTAATATTAAAGCTGTGT+TGG | + | chr1_4:31321232-31321251 | Msa0159780:intron | 30.0% | |
| ! | AACTGTACATTAGGATTTTC+AGG | + | chr1_4:31321298-31321317 | Msa0159780:intron | 30.0% |
| TTGCCAGATGAATTTATTAG+AGG | + | chr1_4:31321329-31321348 | Msa0159780:CDS | 30.0% | |
| AGACCTCTAATAAATTCATC+TGG | - | chr1_4:31321335-31321354 | None:intergenic | 30.0% | |
| ! | TTTCAACTGCCAATTTTTCT+GGG | + | chr1_4:31321354-31321373 | Msa0159780:CDS | 30.0% |
| !!! | CGGAGAGTTGATATTTTATT+TGG | + | chr1_4:31321445-31321464 | Msa0159780:CDS | 30.0% |
| TCGATATTTATATCCCTTTG+CGG | - | chr1_4:31321525-31321544 | None:intergenic | 30.0% | |
| AATGGGGAAATATTGAAGAA+AGG | - | chr1_4:31321729-31321748 | None:intergenic | 30.0% | |
| ! | CCCATTTGTTAGTAAATACT+AGG | + | chr1_4:31321743-31321762 | Msa0159780:intron | 30.0% |
| TATTCCTACTTCAATTAACC+TGG | + | chr1_4:31322004-31322023 | Msa0159780:intron | 30.0% | |
| ! | ATTTTTCCCATATGTCAAGA+GGG | - | chr1_4:31322177-31322196 | None:intergenic | 30.0% |
| TTAGTTAATCTGCTGGAAAA+TGG | + | chr1_4:31322236-31322255 | Msa0159780:intron | 30.0% | |
| AGTCTACACTTGGTAAAATA+AGG | + | chr1_4:31322334-31322353 | Msa0159780:intron | 30.0% | |
| GTCTACACTTGGTAAAATAA+GGG | + | chr1_4:31322335-31322354 | Msa0159780:intron | 30.0% | |
| TCTACACTTGGTAAAATAAG+GGG | + | chr1_4:31322336-31322355 | Msa0159780:intron | 30.0% | |
| TTAGTGTACTTTGACATACT+CGG | - | chr1_4:31322785-31322804 | None:intergenic | 30.0% | |
| ATATTACAAGCTGGAAAGAT+AGG | - | chr1_4:31322918-31322937 | None:intergenic | 30.0% | |
| TGTCTTTCATGTAGCTAAAA+TGG | + | chr1_4:31322986-31323005 | Msa0159780:intron | 30.0% | |
| !!! | GATATTGTTTTGGATCTTTC+TGG | + | chr1_4:31323045-31323064 | Msa0159780:intron | 30.0% |
| TGTCATTAATCATCAGACTT+TGG | + | chr1_4:31323106-31323125 | Msa0159780:intron | 30.0% | |
| ! | AACGATGAATGTACTGATAA+TGG | + | chr1_4:31323142-31323161 | Msa0159780:intron | 30.0% |
| AAATTAAGGAATTCTGCTAC+GGG | - | chr1_4:31323194-31323213 | None:intergenic | 30.0% | |
| GAAATTAAGGAATTCTGCTA+CGG | - | chr1_4:31323195-31323214 | None:intergenic | 30.0% | |
| TTTATTGTCAATGGCAATGA+AGG | - | chr1_4:31323436-31323455 | None:intergenic | 30.0% | |
| CATTGCCATTGACAATAAAA+TGG | + | chr1_4:31323437-31323456 | Msa0159780:CDS | 30.0% | |
| ! | CTCAACCATTTTATTGTCAA+TGG | - | chr1_4:31323445-31323464 | None:intergenic | 30.0% |
| CATTGACAATAAAATGGTTG+AGG | + | chr1_4:31323443-31323462 | Msa0159780:CDS | 30.0% | |
| TGACCACAATACGAAAAAAG+TGG | + | chr1_4:31319982-31320001 | Msa0159780:intron | 35.0% | |
| ! | ACACAAGACAGGGATTTTTA+AGG | + | chr1_4:31320055-31320074 | Msa0159780:CDS | 35.0% |
| GATAAGAAAAAACAATGGCG+GGG | - | chr1_4:31320190-31320209 | None:intergenic | 35.0% | |
| AATGGATGTTATCCTTGAGA+GGG | + | chr1_4:31320285-31320304 | Msa0159780:CDS | 35.0% | |
| ATACCATGAGTTCAAAACGA+GGG | - | chr1_4:31320369-31320388 | None:intergenic | 35.0% | |
| AATACCATGAGTTCAAAACG+AGG | - | chr1_4:31320370-31320389 | None:intergenic | 35.0% | |
| CTCAAATACACGAAGTAACT+AGG | - | chr1_4:31320648-31320667 | None:intergenic | 35.0% | |
| ! | TTTGAGAGCTCTAGTTTAGT+AGG | + | chr1_4:31320662-31320681 | Msa0159780:intron | 35.0% |
| CAAGAGCAGCATTATATAGT+TGG | - | chr1_4:31320825-31320844 | None:intergenic | 35.0% | |
| TTGTTAACTGTATCCCTTGT+TGG | + | chr1_4:31321050-31321069 | Msa0159780:intron | 35.0% | |
| ATCAAACAAAGAAAGAAGGG+CGG | - | chr1_4:31321211-31321230 | None:intergenic | 35.0% | |
| GAGCATCAAACAAAGAAAGA+AGG | - | chr1_4:31321215-31321234 | None:intergenic | 35.0% | |
| ! | CTTTCAACTGCCAATTTTTC+TGG | + | chr1_4:31321353-31321372 | Msa0159780:CDS | 35.0% |
| ! | GAGAGTATGTCTGAAAATTG+TGG | + | chr1_4:31321422-31321441 | Msa0159780:CDS | 35.0% |
| AGTATGTCTGAAAATTGTGG+CGG | + | chr1_4:31321425-31321444 | Msa0159780:CDS | 35.0% | |
| TATTGGTGTAGTAAATGCAG+AGG | + | chr1_4:31321556-31321575 | Msa0159780:intron | 35.0% | |
| GGCTGTTAGAAAATTCTTGT+AGG | + | chr1_4:31321624-31321643 | Msa0159780:CDS | 35.0% | |
| GTTAGAAAATTCTTGTAGGC+AGG | + | chr1_4:31321628-31321647 | Msa0159780:CDS | 35.0% | |
| ! | ATTGATATTGTTGGCTAAGC+GGG | - | chr1_4:31321774-31321793 | None:intergenic | 35.0% |
| ! | CATTGATATTGTTGGCTAAG+CGG | - | chr1_4:31321775-31321794 | None:intergenic | 35.0% |
| ! | GGGATTTGCATTGATATTGT+TGG | - | chr1_4:31321783-31321802 | None:intergenic | 35.0% |
| ! | ATCCTAACATTTTGCTTCCA+CGG | + | chr1_4:31321955-31321974 | Msa0159780:CDS | 35.0% |
| AGTACCAGGTTAATTGAAGT+AGG | - | chr1_4:31322011-31322030 | None:intergenic | 35.0% | |
| ! | CATTTTTCCCATATGTCAAG+AGG | - | chr1_4:31322178-31322197 | None:intergenic | 35.0% |
| TTAATCTGCTGGAAAATGGT+AGG | + | chr1_4:31322240-31322259 | Msa0159780:intron | 35.0% | |
| TAATCTGCTGGAAAATGGTA+GGG | + | chr1_4:31322241-31322260 | Msa0159780:intron | 35.0% | |
| ! | ATTGAGTCTTTTGCACCAAA+AGG | + | chr1_4:31322269-31322288 | Msa0159780:intron | 35.0% |
| ! | TTGAGTCTTTTGCACCAAAA+GGG | + | chr1_4:31322270-31322289 | Msa0159780:intron | 35.0% |
| ! | TGATGAATCATCTTCCCTTT+TGG | - | chr1_4:31322287-31322306 | None:intergenic | 35.0% |
| AGGGAAGATGATTCATCATT+TGG | + | chr1_4:31322289-31322308 | Msa0159780:intron | 35.0% | |
| TGTGATTGCAGTTAGCAAAT+AGG | + | chr1_4:31322423-31322442 | Msa0159780:intron | 35.0% | |
| !! | ACTGTAACTCGGTGATTTTA+GGG | + | chr1_4:31322512-31322531 | Msa0159780:intron | 35.0% |
| ACACAGCAAACACTTAACAA+TGG | - | chr1_4:31322590-31322609 | None:intergenic | 35.0% | |
| !! | TTGTTAAGTGTTTGCTGTGT+TGG | + | chr1_4:31322590-31322609 | Msa0159780:intron | 35.0% |
| !! | AATGTATTGAAGCGTTGCTT+AGG | + | chr1_4:31322731-31322750 | Msa0159780:intron | 35.0% |
| GAGTATGTCAAAGTACACTA+AGG | + | chr1_4:31322784-31322803 | Msa0159780:CDS | 35.0% | |
| AAGTACACTAAGGTTACTTC+TGG | + | chr1_4:31322794-31322813 | Msa0159780:CDS | 35.0% | |
| TTATTCCTTCTGATCTCAGT+GGG | + | chr1_4:31322825-31322844 | Msa0159780:CDS | 35.0% | |
| GAAGGTTAAATTGCCATGAT+AGG | - | chr1_4:31322856-31322875 | None:intergenic | 35.0% | |
| TCTTCTCCCATATTCTTTGA+AGG | - | chr1_4:31322874-31322893 | None:intergenic | 35.0% | |
| ATATGGGAGAAGATTATGCA+TGG | + | chr1_4:31322881-31322900 | Msa0159780:CDS | 35.0% | |
| TATGGGAGAAGATTATGCAT+GGG | + | chr1_4:31322882-31322901 | Msa0159780:CDS | 35.0% | |
| TGACAGAGAATATTACAAGC+TGG | - | chr1_4:31322927-31322946 | None:intergenic | 35.0% | |
| ATCTTAACGACATCATTGTG+AGG | - | chr1_4:31322952-31322971 | None:intergenic | 35.0% | |
| ! | TATGATAATGCTTCAAAGGG+AGG | + | chr1_4:31323373-31323392 | Msa0159780:CDS | 35.0% |
| ATTAAAGAGCCTACTGTCTG+CGG | + | chr1_4:31319759-31319778 | Msa0159780:CDS | 40.0% | |
| CAATCACAGTCTATCATCCA+AGG | + | chr1_4:31319906-31319925 | Msa0159780:intron | 40.0% | |
| AGATAGCATCACACAAGACA+GGG | + | chr1_4:31320045-31320064 | Msa0159780:CDS | 40.0% | |
| AACTTTAGGCTTCAGGAACA+GGG | - | chr1_4:31320233-31320252 | None:intergenic | 40.0% | |
| ATCCATTGCTTCAGGAAGTT+GGG | - | chr1_4:31320272-31320291 | None:intergenic | 40.0% | |
| AGGATAACATCCATTGCTTC+AGG | - | chr1_4:31320280-31320299 | None:intergenic | 40.0% | |
| CAATGGATGTTATCCTTGAG+AGG | + | chr1_4:31320284-31320303 | Msa0159780:CDS | 40.0% | |
| CTAGGTATGGTTAGAACAAG+TGG | - | chr1_4:31320453-31320472 | None:intergenic | 40.0% | |
| !! | ACCATACCTAGCTGTTTTGA+AGG | + | chr1_4:31320462-31320481 | Msa0159780:intron | 40.0% |
| TCCTTCAAAACAGCTAGGTA+TGG | - | chr1_4:31320466-31320485 | None:intergenic | 40.0% | |
| GCTTCAGAGAACAGGAAATT+GGG | + | chr1_4:31320867-31320886 | Msa0159780:CDS | 40.0% | |
| TCAAACAAAGAAAGAAGGGC+GGG | - | chr1_4:31321210-31321229 | None:intergenic | 40.0% | |
| TATCGATCGCACTTGTCTAT+TGG | + | chr1_4:31321539-31321558 | Msa0159780:CDS | 40.0% | |
| GCAGAGGAATCATCAGAAAA+TGG | + | chr1_4:31321572-31321591 | Msa0159780:CDS | 40.0% | |
| ! | AGAATTTTCTAACAGCCCCA+AGG | - | chr1_4:31321621-31321640 | None:intergenic | 40.0% |
| GAAAATTCTTGTAGGCAGGT+AGG | + | chr1_4:31321632-31321651 | Msa0159780:intron | 40.0% | |
| AACCGTGGAAGCAAAATGTT+AGG | - | chr1_4:31321960-31321979 | None:intergenic | 40.0% | |
| AGTTGACCCTCTTGACATAT+GGG | + | chr1_4:31322168-31322187 | Msa0159780:intron | 40.0% | |
| TGATTCATCATTTGGCACGT+AGG | + | chr1_4:31322297-31322316 | Msa0159780:intron | 40.0% | |
| GTGTAGACTTTCAAGACCTT+AGG | - | chr1_4:31322323-31322342 | None:intergenic | 40.0% | |
| AGGTCTTGAAAGTCTACACT+TGG | + | chr1_4:31322324-31322343 | Msa0159780:intron | 40.0% | |
| GGTAAAATAAGGGGATAGTG+TGG | + | chr1_4:31322345-31322364 | Msa0159780:intron | 40.0% | |
| GTTCCTATAGGACTGTAACT+CGG | + | chr1_4:31322501-31322520 | Msa0159780:intron | 40.0% | |
| !! | GACTGTAACTCGGTGATTTT+AGG | + | chr1_4:31322511-31322530 | Msa0159780:intron | 40.0% |
| GTTATTCCTTCTGATCTCAG+TGG | + | chr1_4:31322824-31322843 | Msa0159780:CDS | 40.0% | |
| GAGAAGATTATGCATGGGAA+GGG | + | chr1_4:31322887-31322906 | Msa0159780:CDS | 40.0% | |
| TCAAGCAAAGTGGTCATTTC+TGG | - | chr1_4:31323301-31323320 | None:intergenic | 40.0% | |
| AATGACCACTTTGCTTGACA+AGG | + | chr1_4:31323303-31323322 | Msa0159780:CDS | 40.0% | |
| CAAATCCTTGTCAAGCAAAG+TGG | - | chr1_4:31323311-31323330 | None:intergenic | 40.0% | |
| ! | TTTTCCCTTTCCTTGAGCGT+TGG | - | chr1_4:31319708-31319727 | None:intergenic | 45.0% |
| TGTCTGCGGCATTACTTCAT+TGG | + | chr1_4:31319773-31319792 | Msa0159780:CDS | 45.0% | |
| GTCTGCGGCATTACTTCATT+GGG | + | chr1_4:31319774-31319793 | Msa0159780:CDS | 45.0% | |
| TCTGCGGCATTACTTCATTG+GGG | + | chr1_4:31319775-31319794 | Msa0159780:CDS | 45.0% | |
| CAGATAGCATCACACAAGAC+AGG | + | chr1_4:31320044-31320063 | Msa0159780:CDS | 45.0% | |
| GAACTTTAGGCTTCAGGAAC+AGG | - | chr1_4:31320234-31320253 | None:intergenic | 45.0% | |
| ACTGTGAAGGCAGGAACTTT+AGG | - | chr1_4:31320247-31320266 | None:intergenic | 45.0% | |
| TCCATTGCTTCAGGAAGTTG+GGG | - | chr1_4:31320271-31320290 | None:intergenic | 45.0% | |
| CATCCATTGCTTCAGGAAGT+TGG | - | chr1_4:31320273-31320292 | None:intergenic | 45.0% | |
| GCTTGTCCTTCAAAACAGCT+AGG | - | chr1_4:31320471-31320490 | None:intergenic | 45.0% | |
| AACCTGCAGCCATTGAAAAC+AGG | - | chr1_4:31320731-31320750 | None:intergenic | 45.0% | |
| AAAGGCTCAGTAACTTCCAG+TGG | - | chr1_4:31320754-31320773 | None:intergenic | 45.0% | |
| CAGTCTCAATCTCTAGATGC+TGG | + | chr1_4:31320845-31320864 | Msa0159780:CDS | 45.0% | |
| GGCTTCAGAGAACAGGAAAT+TGG | + | chr1_4:31320866-31320885 | Msa0159780:CDS | 45.0% | |
| ! | CAACTGCCAATTTTTCTGGG+AGG | + | chr1_4:31321357-31321376 | Msa0159780:CDS | 45.0% |
| CTGAGACCTCCCAGAAAAAT+TGG | - | chr1_4:31321366-31321385 | None:intergenic | 45.0% | |
| TGGTTCTCTAATGCCGCAAA+GGG | + | chr1_4:31321509-31321528 | Msa0159780:CDS | 45.0% | |
| TCCCTTTCTACATGAGAGCA+AGG | + | chr1_4:31321595-31321614 | Msa0159780:CDS | 45.0% | |
| GCCTTGCTCTCATGTAGAAA+GGG | - | chr1_4:31321599-31321618 | None:intergenic | 45.0% | |
| GAGTTGACCCTCTTGACATA+TGG | + | chr1_4:31322167-31322186 | Msa0159780:intron | 45.0% | |
| TAGCAAATAGGCTGAATGCG+TGG | + | chr1_4:31322435-31322454 | Msa0159780:intron | 45.0% | |
| AGCAAATAGGCTGAATGCGT+GGG | + | chr1_4:31322436-31322455 | Msa0159780:intron | 45.0% | |
| !! | TGAATGCGTGGGGTATCTTT+TGG | + | chr1_4:31322447-31322466 | Msa0159780:intron | 45.0% |
| TCACCGAGTTACAGTCCTAT+AGG | - | chr1_4:31322507-31322526 | None:intergenic | 45.0% | |
| !! | AGTGTTTGCTGTGTTGGTTC+TGG | + | chr1_4:31322596-31322615 | Msa0159780:intron | 45.0% |
| TCTATCCCACTGAGATCAGA+AGG | - | chr1_4:31322833-31322852 | None:intergenic | 45.0% | |
| TCAGTGGGATAGACCTATCA+TGG | + | chr1_4:31322840-31322859 | Msa0159780:CDS | 45.0% | |
| GGAGAAGATTATGCATGGGA+AGG | + | chr1_4:31322886-31322905 | Msa0159780:CDS | 45.0% | |
| ACTGCATGGAAAATCGCTGT+GGG | - | chr1_4:31323404-31323423 | None:intergenic | 45.0% | |
| !! | GAAGGTATTACTGCACTGCA+TGG | - | chr1_4:31323418-31323437 | None:intergenic | 45.0% |
| !!! | TTTATTTTTAATTTTAACTA+TGG | - | chr1_4:31320526-31320545 | None:intergenic | 5.0% |
| !! | TTCATTAAAATAAAAATAAT+TGG | + | chr1_4:31320979-31320998 | Msa0159780:intron | 5.0% |
| GTTTACGACACCAACGCTCA+AGG | + | chr1_4:31319695-31319714 | Msa0159780:CDS | 50.0% | |
| GACACCAACGCTCAAGGAAA+GGG | + | chr1_4:31319701-31319720 | Msa0159780:CDS | 50.0% | |
| GAAGTAATGCCGCAGACAGT+AGG | - | chr1_4:31319771-31319790 | None:intergenic | 50.0% | |
| CGGCATTACTTCATTGGGGA+TGG | + | chr1_4:31319779-31319798 | Msa0159780:CDS | 50.0% | |
| AATCCTGCAGGGGATACTCT+CGG | + | chr1_4:31320020-31320039 | Msa0159780:intron | 50.0% | |
| ! | AAAACAATGGCGGGGAGAAG+AGG | - | chr1_4:31320182-31320201 | None:intergenic | 50.0% |
| AGGCAGGAACTTTAGGCTTC+AGG | - | chr1_4:31320240-31320259 | None:intergenic | 50.0% | |
| !! | AGGAAGTTGGGGTACTGTGA+AGG | - | chr1_4:31320260-31320279 | None:intergenic | 50.0% |
| ACCCCAACTTCCTGAAGCAA+TGG | + | chr1_4:31320267-31320286 | Msa0159780:CDS | 50.0% | |
| TGAGTTCTTTGGCCCTCTCA+AGG | - | chr1_4:31320300-31320319 | None:intergenic | 50.0% | |
| TGAGAGGGCCAAAGAACTCA+TGG | + | chr1_4:31320300-31320319 | Msa0159780:CDS | 50.0% | |
| !! | GGTCCCTCGTTTTGAACTCA+TGG | + | chr1_4:31320363-31320382 | Msa0159780:intron | 50.0% |
| ! | TGCCTGTTTTCAATGGCTGC+AGG | + | chr1_4:31320726-31320745 | Msa0159780:intron | 50.0% |
| !! | AGATGCTGGCTTCAGAGAAC+AGG | + | chr1_4:31320859-31320878 | Msa0159780:CDS | 50.0% |
| !! | GGCGGGTGGACTATTCTTTA+AGG | - | chr1_4:31321193-31321212 | None:intergenic | 50.0% |
| AACAAAGAAAGAAGGGCGGG+TGG | - | chr1_4:31321207-31321226 | None:intergenic | 50.0% | |
| AGCTCATAGTCCAGAGAGCA+TGG | + | chr1_4:31321472-31321491 | Msa0159780:CDS | 50.0% | |
| GCATGGATGCATGTGCAAAG+TGG | + | chr1_4:31321489-31321508 | Msa0159780:CDS | 50.0% | |
| GTGGTTCTCTAATGCCGCAA+AGG | + | chr1_4:31321508-31321527 | Msa0159780:CDS | 50.0% | |
| GGCCTTGCTCTCATGTAGAA+AGG | - | chr1_4:31321600-31321619 | None:intergenic | 50.0% | |
| TCTACATGAGAGCAAGGCCT+TGG | + | chr1_4:31321601-31321620 | Msa0159780:CDS | 50.0% | |
| CTACATGAGAGCAAGGCCTT+GGG | + | chr1_4:31321602-31321621 | Msa0159780:CDS | 50.0% | |
| TACATGAGAGCAAGGCCTTG+GGG | + | chr1_4:31321603-31321622 | Msa0159780:CDS | 50.0% | |
| GCACATGCATTCACTAACCG+TGG | - | chr1_4:31321975-31321994 | None:intergenic | 50.0% | |
| GTGAATGCATGTGCTTCGTC+AGG | + | chr1_4:31321981-31322000 | Msa0159780:CDS | 50.0% | |
| TCATTTGGCACGTAGGCCTA+AGG | + | chr1_4:31322304-31322323 | Msa0159780:intron | 50.0% | |
| GCAAATAGGCTGAATGCGTG+GGG | + | chr1_4:31322437-31322456 | Msa0159780:intron | 50.0% | |
| GGATAGGCAGCAGTTCCTAT+AGG | + | chr1_4:31322489-31322508 | Msa0159780:intron | 50.0% | |
| CATGGAAAATCGCTGTGGGA+AGG | - | chr1_4:31323400-31323419 | None:intergenic | 50.0% | |
| CACTGCATGGAAAATCGCTG+TGG | - | chr1_4:31323405-31323424 | None:intergenic | 50.0% | |
| CGACACCAACGCTCAAGGAA+AGG | + | chr1_4:31319700-31319719 | Msa0159780:CDS | 55.0% | |
| !! | AGTTGGGGTACTGTGAAGGC+AGG | - | chr1_4:31320256-31320275 | None:intergenic | 55.0% |
| TCAATGGCTGCAGGTTCCAC+TGG | + | chr1_4:31320735-31320754 | Msa0159780:intron | 55.0% | |
| GCACATGCATCCATGCTCTC+TGG | - | chr1_4:31321485-31321504 | None:intergenic | 55.0% | |
| !! | TGTCCGAGAGTATCCCCTGC+AGG | - | chr1_4:31320026-31320045 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 31319635 | 31323498 | 31319635 | ID=Msa0159780;Name=Msa0159780 |
| chr1_4 | mRNA | 31319635 | 31323498 | 31319635 | ID=Msa0159780-mRNA-1;Parent=Msa0159780;Name=Msa0159780-mRNA-1;_AED=0.03;_eAED=0.03;_QI=58|0.37|0.33|1|0.75|0.44|9|0|385 |
| chr1_4 | exon | 31319635 | 31319819 | 31319635 | ID=Msa0159780-mRNA-1:exon:9882;Parent=Msa0159780-mRNA-1 |
| chr1_4 | exon | 31320030 | 31320076 | 31320030 | ID=Msa0159780-mRNA-1:exon:9883;Parent=Msa0159780-mRNA-1 |
| chr1_4 | exon | 31320244 | 31320321 | 31320244 | ID=Msa0159780-mRNA-1:exon:9884;Parent=Msa0159780-mRNA-1 |
| chr1_4 | exon | 31320748 | 31320894 | 31320748 | ID=Msa0159780-mRNA-1:exon:9885;Parent=Msa0159780-mRNA-1 |
| chr1_4 | exon | 31321320 | 31321560 | 31321320 | ID=Msa0159780-mRNA-1:exon:9886;Parent=Msa0159780-mRNA-1 |
| chr1_4 | exon | 31321567 | 31321649 | 31321567 | ID=Msa0159780-mRNA-1:exon:9887;Parent=Msa0159780-mRNA-1 |
| chr1_4 | exon | 31321924 | 31322002 | 31321924 | ID=Msa0159780-mRNA-1:exon:9888;Parent=Msa0159780-mRNA-1 |
| chr1_4 | exon | 31322753 | 31322908 | 31322753 | ID=Msa0159780-mRNA-1:exon:9889;Parent=Msa0159780-mRNA-1 |
| chr1_4 | exon | 31323302 | 31323498 | 31323302 | ID=Msa0159780-mRNA-1:exon:9890;Parent=Msa0159780-mRNA-1 |
| chr1_4 | five_prime_UTR | 31319635 | 31319692 | 31319635 | ID=Msa0159780-mRNA-1:five_prime_utr;Parent=Msa0159780-mRNA-1 |
| chr1_4 | CDS | 31319693 | 31319819 | 31319693 | ID=Msa0159780-mRNA-1:cds;Parent=Msa0159780-mRNA-1 |
| chr1_4 | CDS | 31320030 | 31320076 | 31320030 | ID=Msa0159780-mRNA-1:cds;Parent=Msa0159780-mRNA-1 |
| chr1_4 | CDS | 31320244 | 31320321 | 31320244 | ID=Msa0159780-mRNA-1:cds;Parent=Msa0159780-mRNA-1 |
| chr1_4 | CDS | 31320748 | 31320894 | 31320748 | ID=Msa0159780-mRNA-1:cds;Parent=Msa0159780-mRNA-1 |
| chr1_4 | CDS | 31321320 | 31321560 | 31321320 | ID=Msa0159780-mRNA-1:cds;Parent=Msa0159780-mRNA-1 |
| chr1_4 | CDS | 31321567 | 31321649 | 31321567 | ID=Msa0159780-mRNA-1:cds;Parent=Msa0159780-mRNA-1 |
| chr1_4 | CDS | 31321924 | 31322002 | 31321924 | ID=Msa0159780-mRNA-1:cds;Parent=Msa0159780-mRNA-1 |
| chr1_4 | CDS | 31322753 | 31322908 | 31322753 | ID=Msa0159780-mRNA-1:cds;Parent=Msa0159780-mRNA-1 |
| chr1_4 | CDS | 31323302 | 31323498 | 31323302 | ID=Msa0159780-mRNA-1:cds;Parent=Msa0159780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
