AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017510 MtrunA17_Chr1g0168941 97.425 233 4 1 1 231 1 233 1.13e-155 431
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017510 AT4G13540.1 46.061 165 71 4 49 212 37 184 1.13e-32 118
Msa0017510 AT3G23930.1 41.279 172 78 4 52 212 40 199 1.15e-23 95.1

Find 74 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACATCTAAAATCTAAAAT+TGG 0.233307 1_1:-29111123 Msa0017510:three_prime_UTR
TGAGAAAGAGTGGGAATTAA+TGG 0.247721 1_1:-29112156 Msa0017510:CDS
ACTTACCATCATATGTTCTT+TGG 0.249382 1_1:+29112021 None:intergenic
GAAGAAGTTGAAAATCAAAT+TGG 0.250274 1_1:-29111186 Msa0017510:CDS
TTCTTCTCTTTAGTTTGAAT+TGG 0.254934 1_1:+29111206 None:intergenic
AAAGCTTTAAAAGCTCAATT+AGG 0.297525 1_1:-29111314 Msa0017510:CDS
GATAATGGTGTTTGCTTTCA+AGG 0.301137 1_1:-29112303 Msa0017510:CDS
ATTAATGGGGACTAAGCTTT+TGG 0.315398 1_1:-29112141 Msa0017510:CDS
AAAGGGAATTTGACTTGTTA+AGG 0.331176 1_1:-29111262 Msa0017510:CDS
AAATCTAAAATTGGTTGAAT+AGG 0.347060 1_1:-29111114 Msa0017510:three_prime_UTR
TAAAGGAGATAATGTGTGAT+AGG 0.355573 1_1:-29112355 Msa0017510:CDS
ATAATTAAGAGGGTTAAATA+TGG 0.372889 1_1:+29112544 None:intergenic
ACTTCTACAAGAAGAAATAA+AGG 0.374088 1_1:-29112372 Msa0017510:CDS
TACTGAATATGCCATGTCTA+AGG 0.379067 1_1:-29110905 Msa0017510:three_prime_UTR
GAACTATGAGAGGGAGATAA+TGG 0.387809 1_1:-29112318 Msa0017510:CDS
GAGAAAGAGTGGGAATTAAT+GGG 0.405188 1_1:-29112155 Msa0017510:CDS
AAAAGAGGATAATAATTAAG+AGG 0.425100 1_1:+29112533 None:intergenic
GAGGGAAGTGGTGGAAGAGA+AGG 0.429388 1_1:-29112228 Msa0017510:CDS
AAGAGAAGGAAGAGAAGATA+AGG 0.430927 1_1:-29112214 Msa0017510:CDS
AAGAAGTTGAAAATCAAATT+GGG 0.435875 1_1:-29111185 Msa0017510:CDS
GGTGAAGCAGTTGAGGGAAG+TGG 0.438865 1_1:-29112240 Msa0017510:CDS
AAGAAGAGGTGAAGCAGTTG+AGG 0.440787 1_1:-29112247 Msa0017510:CDS
TCACAGGAGATGGTTTGTAT+TGG 0.451338 1_1:-29111406 Msa0017510:intron
AAGTCCTTTGGATCTTGAAA+AGG 0.454440 1_1:-29110985 Msa0017510:three_prime_UTR
AGAAGAATTGTGAGAAAGAG+TGG 0.454742 1_1:-29112166 Msa0017510:CDS
ATAAGGGAGATGGAAGAGGT+TGG 0.460472 1_1:-29112197 Msa0017510:CDS
TTGCTTTCAAGGAGGCAGAT+TGG 0.464224 1_1:-29112292 Msa0017510:CDS
AAGAAAGGTACAAACAAGAA+AGG 0.469395 1_1:-29111280 Msa0017510:CDS
TTAAATATGGAGTTATGTAC+AGG 0.475012 1_1:+29112557 None:intergenic
TTATTATATAGATTTAAATA+CGG 0.476164 1_1:-29110856 Msa0017510:three_prime_UTR
AGAGAAGGAAGAGAAGATAA+GGG 0.476340 1_1:-29112213 Msa0017510:CDS
AGAAGAGGTGAAGCAGTTGA+GGG 0.480459 1_1:-29112246 Msa0017510:CDS
AAGAGAGTAGGAACTATGAG+AGG 0.487797 1_1:-29112328 Msa0017510:CDS
GAAGATAAGGGAGATGGAAG+AGG 0.488344 1_1:-29112201 Msa0017510:CDS
TATGGAGTTATGTACAGGTT+AGG 0.492116 1_1:+29112562 None:intergenic
TACAAATTGAAAATCTGAAG+AGG 0.492525 1_1:-29111364 Msa0017510:CDS
CTACAAGGAATTAAAATAAG+TGG 0.492578 1_1:+29111056 None:intergenic
GTGATAGGGAGAAAGAGAGT+AGG 0.501313 1_1:-29112340 Msa0017510:CDS
GGAAGAGAAGATAAGGGAGA+TGG 0.503969 1_1:-29112207 Msa0017510:CDS
TCTTGCAATTAAGAATGAGT+TGG 0.505081 1_1:-29112054 Msa0017510:CDS
GAGATGAAGCTGTTGAGAAG+TGG 0.508742 1_1:-29112088 Msa0017510:CDS
TAGGTTCAGTGGAGAAAGAA+AGG 0.512086 1_1:-29111295 Msa0017510:CDS
GAAGCAGTTGAGGGAAGTGG+TGG 0.513840 1_1:-29112237 Msa0017510:CDS
AAAAGCTCAATTAGGTTCAG+TGG 0.518823 1_1:-29111306 Msa0017510:CDS
AGAGAGTAGGAACTATGAGA+GGG 0.522297 1_1:-29112327 Msa0017510:CDS
CTCATCCAAAGAACATATGA+TGG 0.522947 1_1:-29112026 Msa0017510:intron
ACAAGGGGCCAATTCAAAGA+TGG 0.524101 1_1:-29112474 Msa0017510:exon
AAAGGAGATAATGTGTGATA+GGG 0.526845 1_1:-29112354 Msa0017510:CDS
GATGAAGAGGTTGAAAGAAG+AGG 0.528949 1_1:-29112261 Msa0017510:CDS
AGAAAGGTACAAACAAGAAA+GGG 0.530283 1_1:-29111279 Msa0017510:CDS
TTATAGTGAGAGATGAAAAG+AGG 0.531477 1_1:+29112518 None:intergenic
GAAAAGGACACAAAATATGA+AGG 0.534850 1_1:-29110969 Msa0017510:three_prime_UTR
CAAGGGGCCAATTCAAAGAT+GGG 0.538294 1_1:-29112473 Msa0017510:exon
GGAGATGGAAGAGGTTGGAA+TGG 0.546010 1_1:-29112192 Msa0017510:CDS
ACTTGTTAAGGCAAAGCTTG+AGG 0.554263 1_1:-29111250 Msa0017510:CDS
GGAAAATAAAATGCAAACAT+TGG 0.554585 1_1:-29111164 Msa0017510:exon
AAAGAGGATAATAATTAAGA+GGG 0.562833 1_1:+29112534 None:intergenic
ATTGGAAACAAGAGATGAAG+AGG 0.564436 1_1:-29112274 Msa0017510:CDS
CAAAGCTTGAGGATCATGAA+TGG 0.565818 1_1:-29111239 Msa0017510:CDS
CATTCACTACTCCTTAGACA+TGG 0.567542 1_1:+29110894 None:intergenic
AAACTACAACACTTGTCACA+AGG 0.585905 1_1:-29112491 Msa0017510:five_prime_UTR
ACAAATTGAAAATCTGAAGA+GGG 0.598118 1_1:-29111363 Msa0017510:CDS
GAAGAATTGTGAGAAAGAGT+GGG 0.599083 1_1:-29112165 Msa0017510:CDS
AACTACAACACTTGTCACAA+GGG 0.607391 1_1:-29112490 Msa0017510:five_prime_UTR
AAGGGGCCAATTCAAAGATG+GGG 0.610731 1_1:-29112472 Msa0017510:exon
AGAAAGAGTGGGAATTAATG+GGG 0.618319 1_1:-29112154 Msa0017510:CDS
AGATGAAGGAGGAAAGAGCA+AGG 0.618929 1_1:-29112112 Msa0017510:CDS
TGGTTTGTATTGGAAAGCTG+AGG 0.636251 1_1:-29111396 Msa0017510:CDS
ACTACATAAGCCAGTCCACA+AGG 0.639940 1_1:+29110928 None:intergenic
TTTGGTTCAAGAGATGAAGG+AGG 0.645416 1_1:-29112123 Msa0017510:CDS
AGGGGCCAATTCAAAGATGG+GGG 0.664758 1_1:-29112471 Msa0017510:exon
ACTACAACACTTGTCACAAG+GGG 0.671010 1_1:-29112489 Msa0017510:five_prime_UTR
AATGGTGTTTGCTTTCAAGG+AGG 0.717432 1_1:-29112300 Msa0017510:CDS
GGGGCCAATTCAAAGATGGG+GGG 0.731569 1_1:-29112470 Msa0017510:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCATTACATATTTTTG+TGG + chr1_1:29111017-29111036 None:intergenic 15.0%
!!! AAACTATAAACTGTTTTTAT+AGG + chr1_1:29111664-29111683 None:intergenic 15.0%
!!! AAATTCATTACATATTTTTG+TGG + chr1_1:29111017-29111036 None:intergenic 15.0%
!!! AAACTATAAACTGTTTTTAT+AGG + chr1_1:29111664-29111683 None:intergenic 15.0%
!! ATAATTAAGAGGGTTAAATA+TGG + chr1_1:29110883-29110902 None:intergenic 20.0%
!! AAAGAGGATAATAATTAAGA+GGG + chr1_1:29110893-29110912 None:intergenic 20.0%
!! AAAAGAGGATAATAATTAAG+AGG + chr1_1:29110894-29110913 None:intergenic 20.0%
!! AAATACAAACACTAATTGTT+TGG + chr1_1:29111775-29111794 None:intergenic 20.0%
!!! ATTTTGAAAAGTACTATGAT+GGG + chr1_1:29111873-29111892 None:intergenic 20.0%
!!! AATTTTGAAAAGTACTATGA+TGG + chr1_1:29111874-29111893 None:intergenic 20.0%
!! ATTAATATGTGACAATAATG+TGG - chr1_1:29111899-29111918 Msa0017510:intron 20.0%
!! AAGAAGTTGAAAATCAAATT+GGG - chr1_1:29112239-29112258 Msa0017510:CDS 20.0%
!!! TCACATCTAAAATCTAAAAT+TGG - chr1_1:29112301-29112320 Msa0017510:CDS 20.0%
!!! AAATCTAAAATTGGTTGAAT+AGG - chr1_1:29112310-29112329 Msa0017510:CDS 20.0%
!!! ACACCTTTTTAAAATAAGTA+AGG - chr1_1:29112400-29112419 Msa0017510:CDS 20.0%
!!! TTGCCTTACTTATTTTAAAA+AGG + chr1_1:29112406-29112425 None:intergenic 20.0%
!! ACTATAAAAAAAAAGTCCTT+TGG - chr1_1:29112427-29112446 Msa0017510:CDS 20.0%
!! ATAATTAAGAGGGTTAAATA+TGG + chr1_1:29110883-29110902 None:intergenic 20.0%
!! AAAGAGGATAATAATTAAGA+GGG + chr1_1:29110893-29110912 None:intergenic 20.0%
!! AAAAGAGGATAATAATTAAG+AGG + chr1_1:29110894-29110913 None:intergenic 20.0%
!! AAATACAAACACTAATTGTT+TGG + chr1_1:29111775-29111794 None:intergenic 20.0%
!!! ATTTTGAAAAGTACTATGAT+GGG + chr1_1:29111873-29111892 None:intergenic 20.0%
!!! AATTTTGAAAAGTACTATGA+TGG + chr1_1:29111874-29111893 None:intergenic 20.0%
!! ATTAATATGTGACAATAATG+TGG - chr1_1:29111899-29111918 Msa0017510:intron 20.0%
!! AAGAAGTTGAAAATCAAATT+GGG - chr1_1:29112239-29112258 Msa0017510:CDS 20.0%
!!! TCACATCTAAAATCTAAAAT+TGG - chr1_1:29112301-29112320 Msa0017510:CDS 20.0%
!!! AAATCTAAAATTGGTTGAAT+AGG - chr1_1:29112310-29112329 Msa0017510:CDS 20.0%
!!! ACACCTTTTTAAAATAAGTA+AGG - chr1_1:29112400-29112419 Msa0017510:CDS 20.0%
!!! TTGCCTTACTTATTTTAAAA+AGG + chr1_1:29112406-29112425 None:intergenic 20.0%
!! ACTATAAAAAAAAAGTCCTT+TGG - chr1_1:29112427-29112446 Msa0017510:CDS 20.0%
! TTAAATATGGAGTTATGTAC+AGG + chr1_1:29110870-29110889 None:intergenic 25.0%
! ACTTCTACAAGAAGAAATAA+AGG - chr1_1:29111052-29111071 Msa0017510:three_prime_UTR 25.0%
! TACAAATTGAAAATCTGAAG+AGG - chr1_1:29112060-29112079 Msa0017510:CDS 25.0%
! ACAAATTGAAAATCTGAAGA+GGG - chr1_1:29112061-29112080 Msa0017510:CDS 25.0%
!!! AAAGCTTTAAAAGCTCAATT+AGG - chr1_1:29112110-29112129 Msa0017510:CDS 25.0%
!!! TTCTTCTCTTTAGTTTGAAT+TGG + chr1_1:29112221-29112240 None:intergenic 25.0%
! GAAGAAGTTGAAAATCAAAT+TGG - chr1_1:29112238-29112257 Msa0017510:CDS 25.0%
! GGAAAATAAAATGCAAACAT+TGG - chr1_1:29112260-29112279 Msa0017510:CDS 25.0%
! CTACAAGGAATTAAAATAAG+TGG + chr1_1:29112371-29112390 None:intergenic 25.0%
! AGGTGTAAAAATAAACTACA+AGG + chr1_1:29112386-29112405 None:intergenic 25.0%
!!! ATTAGCAATTTTTTTCCTTG+TGG - chr1_1:29112481-29112500 Msa0017510:five_prime_UTR 25.0%
! TTAAATATGGAGTTATGTAC+AGG + chr1_1:29110870-29110889 None:intergenic 25.0%
! ACTTCTACAAGAAGAAATAA+AGG - chr1_1:29111052-29111071 Msa0017510:three_prime_UTR 25.0%
! TACAAATTGAAAATCTGAAG+AGG - chr1_1:29112060-29112079 Msa0017510:CDS 25.0%
! ACAAATTGAAAATCTGAAGA+GGG - chr1_1:29112061-29112080 Msa0017510:CDS 25.0%
!!! AAAGCTTTAAAAGCTCAATT+AGG - chr1_1:29112110-29112129 Msa0017510:CDS 25.0%
!!! TTCTTCTCTTTAGTTTGAAT+TGG + chr1_1:29112221-29112240 None:intergenic 25.0%
! GAAGAAGTTGAAAATCAAAT+TGG - chr1_1:29112238-29112257 Msa0017510:CDS 25.0%
! GGAAAATAAAATGCAAACAT+TGG - chr1_1:29112260-29112279 Msa0017510:CDS 25.0%
! CTACAAGGAATTAAAATAAG+TGG + chr1_1:29112371-29112390 None:intergenic 25.0%
! AGGTGTAAAAATAAACTACA+AGG + chr1_1:29112386-29112405 None:intergenic 25.0%
!!! ATTAGCAATTTTTTTCCTTG+TGG - chr1_1:29112481-29112500 Msa0017510:five_prime_UTR 25.0%
TTATAGTGAGAGATGAAAAG+AGG + chr1_1:29110909-29110928 None:intergenic 30.0%
TAAAGGAGATAATGTGTGAT+AGG - chr1_1:29111069-29111088 Msa0017510:three_prime_UTR 30.0%
AAAGGAGATAATGTGTGATA+GGG - chr1_1:29111070-29111089 Msa0017510:three_prime_UTR 30.0%
TCTTGCAATTAAGAATGAGT+TGG - chr1_1:29111370-29111389 Msa0017510:CDS 30.0%
ACTTACCATCATATGTTCTT+TGG + chr1_1:29111406-29111425 None:intergenic 30.0%
! TACTTGAGCTTATTTGCTTT+TGG - chr1_1:29111987-29112006 Msa0017510:intron 30.0%
! AAGAAAGGTACAAACAAGAA+AGG - chr1_1:29112144-29112163 Msa0017510:CDS 30.0%
! AGAAAGGTACAAACAAGAAA+GGG - chr1_1:29112145-29112164 Msa0017510:CDS 30.0%
!! AAAGGGAATTTGACTTGTTA+AGG - chr1_1:29112162-29112181 Msa0017510:CDS 30.0%
GAAAAGGACACAAAATATGA+AGG - chr1_1:29112455-29112474 Msa0017510:CDS 30.0%
TTATAGTGAGAGATGAAAAG+AGG + chr1_1:29110909-29110928 None:intergenic 30.0%
TAAAGGAGATAATGTGTGAT+AGG - chr1_1:29111069-29111088 Msa0017510:three_prime_UTR 30.0%
AAAGGAGATAATGTGTGATA+GGG - chr1_1:29111070-29111089 Msa0017510:three_prime_UTR 30.0%
TCTTGCAATTAAGAATGAGT+TGG - chr1_1:29111370-29111389 Msa0017510:CDS 30.0%
ACTTACCATCATATGTTCTT+TGG + chr1_1:29111406-29111425 None:intergenic 30.0%
! TACTTGAGCTTATTTGCTTT+TGG - chr1_1:29111987-29112006 Msa0017510:intron 30.0%
! AAGAAAGGTACAAACAAGAA+AGG - chr1_1:29112144-29112163 Msa0017510:CDS 30.0%
! AGAAAGGTACAAACAAGAAA+GGG - chr1_1:29112145-29112164 Msa0017510:CDS 30.0%
!! AAAGGGAATTTGACTTGTTA+AGG - chr1_1:29112162-29112181 Msa0017510:CDS 30.0%
GAAAAGGACACAAAATATGA+AGG - chr1_1:29112455-29112474 Msa0017510:CDS 30.0%
TATGGAGTTATGTACAGGTT+AGG + chr1_1:29110865-29110884 None:intergenic 35.0%
AAACTACAACACTTGTCACA+AGG - chr1_1:29110933-29110952 Msa0017510:three_prime_UTR 35.0%
AACTACAACACTTGTCACAA+GGG - chr1_1:29110934-29110953 Msa0017510:three_prime_UTR 35.0%
! GATAATGGTGTTTGCTTTCA+AGG - chr1_1:29111121-29111140 Msa0017510:three_prime_UTR 35.0%
ATTGGAAACAAGAGATGAAG+AGG - chr1_1:29111150-29111169 Msa0017510:three_prime_UTR 35.0%
AAGAGAAGGAAGAGAAGATA+AGG - chr1_1:29111210-29111229 Msa0017510:CDS 35.0%
AGAGAAGGAAGAGAAGATAA+GGG - chr1_1:29111211-29111230 Msa0017510:CDS 35.0%
AGAAGAATTGTGAGAAAGAG+TGG - chr1_1:29111258-29111277 Msa0017510:CDS 35.0%
GAAGAATTGTGAGAAAGAGT+GGG - chr1_1:29111259-29111278 Msa0017510:CDS 35.0%
TGAGAAAGAGTGGGAATTAA+TGG - chr1_1:29111268-29111287 Msa0017510:CDS 35.0%
GAGAAAGAGTGGGAATTAAT+GGG - chr1_1:29111269-29111288 Msa0017510:CDS 35.0%
AGAAAGAGTGGGAATTAATG+GGG - chr1_1:29111270-29111289 Msa0017510:CDS 35.0%
! ATTAATGGGGACTAAGCTTT+TGG - chr1_1:29111283-29111302 Msa0017510:CDS 35.0%
CTCATCCAAAGAACATATGA+TGG - chr1_1:29111398-29111417 Msa0017510:CDS 35.0%
!! GCTTTTGGAAATATACTCAC+AGG - chr1_1:29112002-29112021 Msa0017510:intron 35.0%
AAAAGCTCAATTAGGTTCAG+TGG - chr1_1:29112118-29112137 Msa0017510:CDS 35.0%
AAGTCCTTTGGATCTTGAAA+AGG - chr1_1:29112439-29112458 Msa0017510:CDS 35.0%
!!! CAATTTTTTTCCTTGTGGAC+TGG - chr1_1:29112486-29112505 Msa0017510:five_prime_UTR 35.0%
TACTGAATATGCCATGTCTA+AGG - chr1_1:29112519-29112538 Msa0017510:five_prime_UTR 35.0%
TATGGAGTTATGTACAGGTT+AGG + chr1_1:29110865-29110884 None:intergenic 35.0%
AAACTACAACACTTGTCACA+AGG - chr1_1:29110933-29110952 Msa0017510:three_prime_UTR 35.0%
AACTACAACACTTGTCACAA+GGG - chr1_1:29110934-29110953 Msa0017510:three_prime_UTR 35.0%
! GATAATGGTGTTTGCTTTCA+AGG - chr1_1:29111121-29111140 Msa0017510:three_prime_UTR 35.0%
ATTGGAAACAAGAGATGAAG+AGG - chr1_1:29111150-29111169 Msa0017510:three_prime_UTR 35.0%
AAGAGAAGGAAGAGAAGATA+AGG - chr1_1:29111210-29111229 Msa0017510:CDS 35.0%
AGAGAAGGAAGAGAAGATAA+GGG - chr1_1:29111211-29111230 Msa0017510:CDS 35.0%
AGAAGAATTGTGAGAAAGAG+TGG - chr1_1:29111258-29111277 Msa0017510:CDS 35.0%
GAAGAATTGTGAGAAAGAGT+GGG - chr1_1:29111259-29111278 Msa0017510:CDS 35.0%
TGAGAAAGAGTGGGAATTAA+TGG - chr1_1:29111268-29111287 Msa0017510:CDS 35.0%
GAGAAAGAGTGGGAATTAAT+GGG - chr1_1:29111269-29111288 Msa0017510:CDS 35.0%
AGAAAGAGTGGGAATTAATG+GGG - chr1_1:29111270-29111289 Msa0017510:CDS 35.0%
! ATTAATGGGGACTAAGCTTT+TGG - chr1_1:29111283-29111302 Msa0017510:CDS 35.0%
CTCATCCAAAGAACATATGA+TGG - chr1_1:29111398-29111417 Msa0017510:CDS 35.0%
!! GCTTTTGGAAATATACTCAC+AGG - chr1_1:29112002-29112021 Msa0017510:intron 35.0%
AAAAGCTCAATTAGGTTCAG+TGG - chr1_1:29112118-29112137 Msa0017510:CDS 35.0%
AAGTCCTTTGGATCTTGAAA+AGG - chr1_1:29112439-29112458 Msa0017510:CDS 35.0%
!!! CAATTTTTTTCCTTGTGGAC+TGG - chr1_1:29112486-29112505 Msa0017510:five_prime_UTR 35.0%
TACTGAATATGCCATGTCTA+AGG - chr1_1:29112519-29112538 Msa0017510:five_prime_UTR 35.0%
ACTACAACACTTGTCACAAG+GGG - chr1_1:29110935-29110954 Msa0017510:three_prime_UTR 40.0%
AAGAGAGTAGGAACTATGAG+AGG - chr1_1:29111096-29111115 Msa0017510:three_prime_UTR 40.0%
AGAGAGTAGGAACTATGAGA+GGG - chr1_1:29111097-29111116 Msa0017510:three_prime_UTR 40.0%
GAACTATGAGAGGGAGATAA+TGG - chr1_1:29111106-29111125 Msa0017510:three_prime_UTR 40.0%
AATGGTGTTTGCTTTCAAGG+AGG - chr1_1:29111124-29111143 Msa0017510:three_prime_UTR 40.0%
GATGAAGAGGTTGAAAGAAG+AGG - chr1_1:29111163-29111182 Msa0017510:exon 40.0%
!!! GCTTTTGGTTCAAGAGATGA+AGG - chr1_1:29111298-29111317 Msa0017510:CDS 40.0%
! TTTGGTTCAAGAGATGAAGG+AGG - chr1_1:29111301-29111320 Msa0017510:CDS 40.0%
!! GCCACACACTACTTTTCAAA+GGG + chr1_1:29111836-29111855 None:intergenic 40.0%
!! TGCCACACACTACTTTTCAA+AGG + chr1_1:29111837-29111856 None:intergenic 40.0%
AAAAGTAGTGTGTGGCAGAT+GGG - chr1_1:29111840-29111859 Msa0017510:intron 40.0%
GGAAATATACTCACAGGAGA+TGG - chr1_1:29112008-29112027 Msa0017510:intron 40.0%
! TCACAGGAGATGGTTTGTAT+TGG - chr1_1:29112018-29112037 Msa0017510:intron 40.0%
! TGGTTTGTATTGGAAAGCTG+AGG - chr1_1:29112028-29112047 Msa0017510:CDS 40.0%
TAGGTTCAGTGGAGAAAGAA+AGG - chr1_1:29112129-29112148 Msa0017510:CDS 40.0%
! ACTTGTTAAGGCAAAGCTTG+AGG - chr1_1:29112174-29112193 Msa0017510:CDS 40.0%
CAAAGCTTGAGGATCATGAA+TGG - chr1_1:29112185-29112204 Msa0017510:CDS 40.0%
!! GTGTCCTTTTCAAGATCCAA+AGG + chr1_1:29112446-29112465 None:intergenic 40.0%
CATTCACTACTCCTTAGACA+TGG + chr1_1:29112533-29112552 None:intergenic 40.0%
ACTACAACACTTGTCACAAG+GGG - chr1_1:29110935-29110954 Msa0017510:three_prime_UTR 40.0%
AAGAGAGTAGGAACTATGAG+AGG - chr1_1:29111096-29111115 Msa0017510:three_prime_UTR 40.0%
AGAGAGTAGGAACTATGAGA+GGG - chr1_1:29111097-29111116 Msa0017510:three_prime_UTR 40.0%
GAACTATGAGAGGGAGATAA+TGG - chr1_1:29111106-29111125 Msa0017510:three_prime_UTR 40.0%
AATGGTGTTTGCTTTCAAGG+AGG - chr1_1:29111124-29111143 Msa0017510:three_prime_UTR 40.0%
GATGAAGAGGTTGAAAGAAG+AGG - chr1_1:29111163-29111182 Msa0017510:exon 40.0%
!!! GCTTTTGGTTCAAGAGATGA+AGG - chr1_1:29111298-29111317 Msa0017510:CDS 40.0%
! TTTGGTTCAAGAGATGAAGG+AGG - chr1_1:29111301-29111320 Msa0017510:CDS 40.0%
!! GCCACACACTACTTTTCAAA+GGG + chr1_1:29111836-29111855 None:intergenic 40.0%
!! TGCCACACACTACTTTTCAA+AGG + chr1_1:29111837-29111856 None:intergenic 40.0%
AAAAGTAGTGTGTGGCAGAT+GGG - chr1_1:29111840-29111859 Msa0017510:intron 40.0%
GGAAATATACTCACAGGAGA+TGG - chr1_1:29112008-29112027 Msa0017510:intron 40.0%
! TCACAGGAGATGGTTTGTAT+TGG - chr1_1:29112018-29112037 Msa0017510:intron 40.0%
! TGGTTTGTATTGGAAAGCTG+AGG - chr1_1:29112028-29112047 Msa0017510:CDS 40.0%
TAGGTTCAGTGGAGAAAGAA+AGG - chr1_1:29112129-29112148 Msa0017510:CDS 40.0%
! ACTTGTTAAGGCAAAGCTTG+AGG - chr1_1:29112174-29112193 Msa0017510:CDS 40.0%
CAAAGCTTGAGGATCATGAA+TGG - chr1_1:29112185-29112204 Msa0017510:CDS 40.0%
!! GTGTCCTTTTCAAGATCCAA+AGG + chr1_1:29112446-29112465 None:intergenic 40.0%
CATTCACTACTCCTTAGACA+TGG + chr1_1:29112533-29112552 None:intergenic 40.0%
ACAAGGGGCCAATTCAAAGA+TGG - chr1_1:29110950-29110969 Msa0017510:three_prime_UTR 45.0%
CAAGGGGCCAATTCAAAGAT+GGG - chr1_1:29110951-29110970 Msa0017510:three_prime_UTR 45.0%
AAGGGGCCAATTCAAAGATG+GGG - chr1_1:29110952-29110971 Msa0017510:three_prime_UTR 45.0%
ACTTCCCCCCATCTTTGAAT+TGG + chr1_1:29110961-29110980 None:intergenic 45.0%
GTGATAGGGAGAAAGAGAGT+AGG - chr1_1:29111084-29111103 Msa0017510:three_prime_UTR 45.0%
TTGCTTTCAAGGAGGCAGAT+TGG - chr1_1:29111132-29111151 Msa0017510:three_prime_UTR 45.0%
AAGAAGAGGTGAAGCAGTTG+AGG - chr1_1:29111177-29111196 Msa0017510:exon 45.0%
AGAAGAGGTGAAGCAGTTGA+GGG - chr1_1:29111178-29111197 Msa0017510:CDS 45.0%
GGAAGAGAAGATAAGGGAGA+TGG - chr1_1:29111217-29111236 Msa0017510:CDS 45.0%
GAAGATAAGGGAGATGGAAG+AGG - chr1_1:29111223-29111242 Msa0017510:CDS 45.0%
ATAAGGGAGATGGAAGAGGT+TGG - chr1_1:29111227-29111246 Msa0017510:CDS 45.0%
AGATGAAGGAGGAAAGAGCA+AGG - chr1_1:29111312-29111331 Msa0017510:CDS 45.0%
GAGATGAAGCTGTTGAGAAG+TGG - chr1_1:29111336-29111355 Msa0017510:CDS 45.0%
! GCCCTTTGAAAAGTAGTGTG+TGG - chr1_1:29111832-29111851 Msa0017510:intron 45.0%
GAAAAGTAGTGTGTGGCAGA+TGG - chr1_1:29111839-29111858 Msa0017510:intron 45.0%
AAAGTAGTGTGTGGCAGATG+GGG - chr1_1:29111841-29111860 Msa0017510:intron 45.0%
ACTACATAAGCCAGTCCACA+AGG + chr1_1:29112499-29112518 None:intergenic 45.0%
ACAAGGGGCCAATTCAAAGA+TGG - chr1_1:29110950-29110969 Msa0017510:three_prime_UTR 45.0%
CAAGGGGCCAATTCAAAGAT+GGG - chr1_1:29110951-29110970 Msa0017510:three_prime_UTR 45.0%
AAGGGGCCAATTCAAAGATG+GGG - chr1_1:29110952-29110971 Msa0017510:three_prime_UTR 45.0%
ACTTCCCCCCATCTTTGAAT+TGG + chr1_1:29110961-29110980 None:intergenic 45.0%
GTGATAGGGAGAAAGAGAGT+AGG - chr1_1:29111084-29111103 Msa0017510:three_prime_UTR 45.0%
TTGCTTTCAAGGAGGCAGAT+TGG - chr1_1:29111132-29111151 Msa0017510:three_prime_UTR 45.0%
AAGAAGAGGTGAAGCAGTTG+AGG - chr1_1:29111177-29111196 Msa0017510:exon 45.0%
AGAAGAGGTGAAGCAGTTGA+GGG - chr1_1:29111178-29111197 Msa0017510:CDS 45.0%
GGAAGAGAAGATAAGGGAGA+TGG - chr1_1:29111217-29111236 Msa0017510:CDS 45.0%
GAAGATAAGGGAGATGGAAG+AGG - chr1_1:29111223-29111242 Msa0017510:CDS 45.0%
ATAAGGGAGATGGAAGAGGT+TGG - chr1_1:29111227-29111246 Msa0017510:CDS 45.0%
AGATGAAGGAGGAAAGAGCA+AGG - chr1_1:29111312-29111331 Msa0017510:CDS 45.0%
GAGATGAAGCTGTTGAGAAG+TGG - chr1_1:29111336-29111355 Msa0017510:CDS 45.0%
! GCCCTTTGAAAAGTAGTGTG+TGG - chr1_1:29111832-29111851 Msa0017510:intron 45.0%
GAAAAGTAGTGTGTGGCAGA+TGG - chr1_1:29111839-29111858 Msa0017510:intron 45.0%
AAAGTAGTGTGTGGCAGATG+GGG - chr1_1:29111841-29111860 Msa0017510:intron 45.0%
ACTACATAAGCCAGTCCACA+AGG + chr1_1:29112499-29112518 None:intergenic 45.0%
!!! AAAATTAAATAAAATTCTTT+TGG + chr1_1:29111690-29111709 None:intergenic 5.0%
!! TTATTATATAGATTTAAATA+CGG - chr1_1:29112568-29112587 Msa0017510:five_prime_UTR 5.0%
!!! AAAATTAAATAAAATTCTTT+TGG + chr1_1:29111690-29111709 None:intergenic 5.0%
AGGGGCCAATTCAAAGATGG+GGG - chr1_1:29110953-29110972 Msa0017510:three_prime_UTR 50.0%
GGAGATGGAAGAGGTTGGAA+TGG - chr1_1:29111232-29111251 Msa0017510:CDS 50.0%
AGGGGCCAATTCAAAGATGG+GGG - chr1_1:29110953-29110972 Msa0017510:three_prime_UTR 50.0%
GGAGATGGAAGAGGTTGGAA+TGG - chr1_1:29111232-29111251 Msa0017510:CDS 50.0%
GGGGCCAATTCAAAGATGGG+GGG - chr1_1:29110954-29110973 Msa0017510:three_prime_UTR 55.0%
GGTGAAGCAGTTGAGGGAAG+TGG - chr1_1:29111184-29111203 Msa0017510:CDS 55.0%
GAAGCAGTTGAGGGAAGTGG+TGG - chr1_1:29111187-29111206 Msa0017510:CDS 55.0%
! GAGGGAAGTGGTGGAAGAGA+AGG - chr1_1:29111196-29111215 Msa0017510:CDS 55.0%
GGGGCCAATTCAAAGATGGG+GGG - chr1_1:29110954-29110973 Msa0017510:three_prime_UTR 55.0%
GGTGAAGCAGTTGAGGGAAG+TGG - chr1_1:29111184-29111203 Msa0017510:CDS 55.0%
GAAGCAGTTGAGGGAAGTGG+TGG - chr1_1:29111187-29111206 Msa0017510:CDS 55.0%
! GAGGGAAGTGGTGGAAGAGA+AGG - chr1_1:29111196-29111215 Msa0017510:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 29110856 29112590 29110856 ID=Msa0017510;Name=Msa0017510
chr1_1 mRNA 29110856 29112590 29110856 ID=Msa0017510-mRNA-1;Parent=Msa0017510;Name=Msa0017510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113|1|1|1|1|1|2|322|231
chr1_1 exon 29110856 29111422 29110856 ID=Msa0017510-mRNA-1:exon:9706;Parent=Msa0017510-mRNA-1
chr1_1 exon 29112027 29112590 29112027 ID=Msa0017510-mRNA-1:exon:9705;Parent=Msa0017510-mRNA-1
chr1_1 five_prime_UTR 29112478 29112590 29112478 ID=Msa0017510-mRNA-1:five_prime_utr;Parent=Msa0017510-mRNA-1
chr1_1 CDS 29112027 29112477 29112027 ID=Msa0017510-mRNA-1:cds;Parent=Msa0017510-mRNA-1
chr1_1 CDS 29111178 29111422 29111178 ID=Msa0017510-mRNA-1:cds;Parent=Msa0017510-mRNA-1
chr1_1 three_prime_UTR 29110856 29111177 29110856 ID=Msa0017510-mRNA-1:three_prime_utr;Parent=Msa0017510-mRNA-1
Gene Sequence

>Msa0017510

ATGGGGGGAAGTGTTAGTGTTAGCAAGAAAAATGAGATAAAGTATCCACAAAAATATGTAATGAATTTGAAAGAGAAAGTGAGACTTCTACAAGAAGAAATAAAGGAGATAATGTGTGATAGGGAGAAAGAGAGTAGGAACTATGAGAGGGAGATAATGGTGTTTGCTTTCAAGGAGGCAGATTGGAAACAAGAGATGAAGAGGTTGAAAGAAGAGGTGAAGCAGTTGAGGGAAGTGGTGGAAGAGAAGGAAGAGAAGATAAGGGAGATGGAAGAGGTTGGAATGGTTGAGAAGAATTGTGAGAAAGAGTGGGAATTAATGGGGACTAAGCTTTTGGTTCAAGAGATGAAGGAGGAAAGAGCAAGGAGAGATGAAGCTGTTGAGAAGTGGAAACAACTTTATCTTGCAATTAAGAATGAGTTGGATGATCTCATCCAAAGAACATATGATGGAGATGGTTTGTATTGGAAAGCTGAGGAAAATGACATACAAATTGAAAATCTGAAGAGGGAATTGCAAGAGAAAGAAGAAAGCATAAAAGCTTTAAAAGCTCAATTAGGTTCAGTGGAGAAAGAAAGGTACAAACAAGAAAGGGAATTTGACTTGTTAAGGCAAAGCTTGAGGATCATGAATGGCAAGAAGAATCCAATTCAAACTAAAGAGAAGAAGAAGTTGAAAATCAAATTGGGAAAATAA

Protein sequence

>Msa0017510

MGGSVSVSKKNEIKYPQKYVMNLKEKVRLLQEEIKEIMCDREKESRNYEREIMVFAFKEADWKQEMKRLKEEVKQLREVVEEKEEKIREMEEVGMVEKNCEKEWELMGTKLLVQEMKEERARRDEAVEKWKQLYLAIKNELDDLIQRTYDGDGLYWKAEENDIQIENLKRELQEKEESIKALKAQLGSVEKERYKQEREFDLLRQSLRIMNGKKNPIQTKEKKKLKIKLGK*