AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0160180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160180 MtrunA17_Chr1g0146721 97.128 383 11 0 1 383 1 383 0.0 775
Msa0160180 MtrunA17_Chr1g0192551 34.831 178 94 5 26 200 366 524 4.93e-18 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160180 AT5G24340.1 55.438 377 155 4 9 382 5 371 3.38e-133 392
Msa0160180 AT5G24340.2 55.438 377 155 4 9 382 5 371 1.39e-132 390
Msa0160180 AT1G56310.2 34.426 183 98 5 21 200 367 530 4.71e-20 92.8
Msa0160180 AT1G56310.1 34.426 183 98 5 21 200 367 530 4.71e-20 92.8

Find 148 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAATATTTAAGGTCTTTC+AGG 0.172278 1_4:+32195228 Msa0160180:CDS
TTGCTTGCTCGGAATATTTA+AGG 0.172649 1_4:+32195219 Msa0160180:CDS
TGGACTGTCACCAACTTTAT+TGG 0.183295 1_4:+32197758 Msa0160180:three_prime_UTR
TGGACAGGTTGAACCGTATT+TGG 0.193079 1_4:+32193200 Msa0160180:intron
CCCTCCCTCTCTCTTCAATA+TGG 0.225431 1_4:+32192150 Msa0160180:CDS
AGTGGATTTCGAGAGGTTTC+TGG 0.243426 1_4:-32191938 None:intergenic
TTCTTGTTAAATAAGCAATT+TGG 0.256042 1_4:-32197715 None:intergenic
AAGAAGCAGTTGCCAATTAA+TGG 0.266519 1_4:+32196397 Msa0160180:CDS
GTTGGGGATTTCACTATCTA+AGG 0.266528 1_4:+32193317 Msa0160180:CDS
ACTCAGCCATTGTTAGCTTT+TGG 0.273099 1_4:+32198591 Msa0160180:three_prime_UTR
TCTCTGGGAAGCCCATTAAT+TGG 0.275370 1_4:-32196409 None:intergenic
TTGGGTTGAAAGAGCTATTC+AGG 0.279184 1_4:+32196131 Msa0160180:CDS
TTAACAAGAATTTAGAGTTT+TGG 0.282841 1_4:+32197728 Msa0160180:three_prime_UTR
TTCTTGTTCTGATGTTGTTC+AGG 0.290742 1_4:+32196222 Msa0160180:CDS
CGAACTTCTGTACTGCATTA+TGG 0.303283 1_4:-32198087 None:intergenic
CGCCGAGTTGACACGCGATT+TGG 0.332673 1_4:-32192094 None:intergenic
GAAGAGATGAATGAGGGTTT+TGG 0.342950 1_4:-32191892 None:intergenic
AATTGGGGAAAGATATTAAC+TGG 0.343664 1_4:-32198653 None:intergenic
ACTTCGAATGGATAATCTAT+TGG 0.346561 1_4:-32196101 None:intergenic
TTCAAAGACAACGTATTTAG+TGG 0.347954 1_4:-32198365 None:intergenic
GGACTGTCACCAACTTTATT+GGG 0.348017 1_4:+32197759 Msa0160180:three_prime_UTR
TCCGTTGAAATTAAATAGTT+AGG 0.353808 1_4:-32198431 None:intergenic
CGACGAGGGAGGTTTGAGTT+AGG 0.362587 1_4:-32192007 None:intergenic
TCCATTCGAAGTGCAAATCT+TGG 0.365006 1_4:+32196112 Msa0160180:CDS
GATCTTCGTTAATATTTAGT+TGG 0.370178 1_4:-32197594 None:intergenic
TCTGTACTGCATTATGGTAC+TGG 0.375544 1_4:-32198081 None:intergenic
AGAAGCAGTTGCCAATTAAT+GGG 0.394347 1_4:+32196398 Msa0160180:CDS
AGACGGTGGGGAATGAGTTT+TGG 0.396979 1_4:-32192064 None:intergenic
AATTCAAACCTTATCGAAAC+CGG 0.401870 1_4:-32192282 None:intergenic
CAAAACATTTACGTTGTGTT+GGG 0.402928 1_4:+32196862 Msa0160180:CDS
ACTATTTGTGGAGAATTGTT+GGG 0.403644 1_4:+32193300 Msa0160180:CDS
AAGAGTTTGTCAACTATTTG+TGG 0.413650 1_4:+32193288 Msa0160180:CDS
GTTAACTATAGGAGAAGAAA+TGG 0.419067 1_4:-32191867 None:intergenic
CACCTTGGGATCCAATAGTT+GGG 0.419800 1_4:+32196470 Msa0160180:CDS
TTTGAGTTAGGGAACGAGTT+AGG 0.421933 1_4:-32191995 None:intergenic
AAGAGAGAGGGAGGGAGATA+AGG 0.425681 1_4:-32192142 None:intergenic
TTGTCAGAAAACATGGTGAT+AGG 0.426512 1_4:+32196323 Msa0160180:CDS
AACTATTTGTGGAGAATTGT+TGG 0.431111 1_4:+32193299 Msa0160180:CDS
CAGGCAACGGTTGCCGAAGA+AGG 0.435285 1_4:+32195247 Msa0160180:CDS
ATACTCTATTACCTTGGTTC+AGG 0.437955 1_4:-32196915 None:intergenic
GAAGTGATGTATACCACATC+AGG 0.441192 1_4:+32198452 Msa0160180:three_prime_UTR
CCATAGCTGCATATGTCATC+TGG 0.441623 1_4:-32195189 None:intergenic
GGTTCAGGCTTCTTTGAAGA+AGG 0.443658 1_4:-32196900 None:intergenic
AGGAGCTCCAATGTAGTGAT+TGG 0.446279 1_4:+32195143 Msa0160180:intron
CCTCCCTCTCTCTTCAATAT+GGG 0.447072 1_4:+32192151 Msa0160180:CDS
ATTTCGAGAGGTTTCTGGTT+CGG 0.449245 1_4:-32191933 None:intergenic
GTCATCTGGTCTTCTGTAAG+AGG 0.455188 1_4:-32195175 None:intergenic
CCATTCGAAGTGCAAATCTT+GGG 0.457879 1_4:+32196113 Msa0160180:CDS
CTGTACTGCATTATGGTACT+GGG 0.458731 1_4:-32198080 None:intergenic
GCACCTTGGGATCCAATAGT+TGG 0.460032 1_4:+32196469 Msa0160180:CDS
AAAGTTCCTCTGTGATGTTA+TGG 0.461542 1_4:+32196507 Msa0160180:CDS
CTGCGGAAACCAGCATTTCT+CGG 0.462154 1_4:-32192181 None:intergenic
ATAACATCACAGAGGAACTT+TGG 0.466771 1_4:-32196505 None:intergenic
CCCAAGATTTGCACTTCGAA+TGG 0.470113 1_4:-32196113 None:intergenic
ATGCAATCCCGGTTTCGATA+AGG 0.470492 1_4:+32192274 Msa0160180:CDS
TCCGCAGATATCTTGAAGCT+TGG 0.472276 1_4:+32192197 Msa0160180:CDS
GCAAAACATTTACGTTGTGT+TGG 0.472670 1_4:+32196861 Msa0160180:CDS
GTGGCAAGGTACCGCACCTT+GGG 0.474336 1_4:+32196456 Msa0160180:CDS
ACGAGTTAGGTGAGTGAACT+CGG 0.479955 1_4:-32191982 None:intergenic
ATATACTCAGGTTGAAGGCT+TGG 0.480503 1_4:+32196839 Msa0160180:intron
GTTCAGGTGATACCTTCAGC+AGG 0.480716 1_4:+32196238 Msa0160180:CDS
TCGTCTGCGGTTTAATGTAA+TGG 0.487271 1_4:+32198340 Msa0160180:three_prime_UTR
ATTCTACGCTGCAGGAGAGT+TGG 0.488155 1_4:+32196069 Msa0160180:intron
GTTCGGTGGATCCATGTTGA+AGG 0.490687 1_4:-32191916 None:intergenic
GACGAGGGAGGTTTGAGTTA+GGG 0.492859 1_4:-32192006 None:intergenic
AAGGAATATACTCAGGTTGA+AGG 0.492962 1_4:+32196834 Msa0160180:intron
ACCTAACTATTTAATTTCAA+CGG 0.494693 1_4:+32198430 Msa0160180:three_prime_UTR
ATGGATGCTCATTGCTTGCT+CGG 0.498298 1_4:+32195208 Msa0160180:CDS
ACAATACCTCCCAATAAAGT+TGG 0.500595 1_4:-32197768 None:intergenic
ATTGCATCCTTGTTCACAAA+AGG 0.500679 1_4:-32192258 None:intergenic
TGTGAACAAGGATGCAATCC+CGG 0.506138 1_4:+32192263 Msa0160180:CDS
CCAGATGACATATGCAGCTA+TGG 0.508239 1_4:+32195189 Msa0160180:CDS
ATAATTCATCCGACAGGAAG+AGG 0.508310 1_4:-32197021 None:intergenic
GGAACCTCTCCGAGAAATGC+TGG 0.508729 1_4:+32192172 Msa0160180:CDS
ATAGCCTCTTCAGTTGAAAG+TGG 0.510202 1_4:-32197664 None:intergenic
TGAATCACTGCCCCTGCTGA+AGG 0.517305 1_4:-32196250 None:intergenic
CGAGTTGACACGCGATTTGG+AGG 0.530138 1_4:-32192091 None:intergenic
TTCAATGGAAATGTATTCAG+TGG 0.535048 1_4:-32198177 None:intergenic
AGTTCGGACGGGTTTCCACT+CGG 0.540037 1_4:-32192039 None:intergenic
GAGGGAGGGAGATAAGGTCG+AGG 0.541400 1_4:-32192136 None:intergenic
ATTTAAGGTCTTTCAGGCAA+CGG 0.542045 1_4:+32195234 Msa0160180:CDS
GAGGCTATTGAAGCTGCAAA+GGG 0.542175 1_4:+32197679 Msa0160180:three_prime_UTR
TCGAGAGGTTTCTGGTTCGG+TGG 0.543537 1_4:-32191930 None:intergenic
CTATTTGTGGAGAATTGTTG+GGG 0.548719 1_4:+32193301 Msa0160180:CDS
TGAAGGGGAAGAGATGAATG+AGG 0.551284 1_4:-32191899 None:intergenic
TTTAAAGGAATTGTATTCAG+TGG 0.552369 1_4:-32198309 None:intergenic
AGTGGCAAGGTACCGCACCT+TGG 0.553048 1_4:+32196455 Msa0160180:CDS
AGAGGCTATTGAAGCTGCAA+AGG 0.553698 1_4:+32197678 Msa0160180:three_prime_UTR
GAAGCCACTTTCAACTGAAG+AGG 0.554381 1_4:+32197660 Msa0160180:three_prime_UTR
GAAGGGGAAGAGATGAATGA+GGG 0.558624 1_4:-32191898 None:intergenic
TGATTCAAAAGTCATCATGT+AGG 0.563710 1_4:+32196266 Msa0160180:CDS
TTAAACAAATTGCATCCATA+CGG 0.563825 1_4:-32198542 None:intergenic
TTGAAAATTGTCAGAAAACA+TGG 0.565414 1_4:+32196316 Msa0160180:CDS
TTCGGTGGATCCATGTTGAA+GGG 0.566857 1_4:-32191915 None:intergenic
GTGAGTGAACTCGGGTGAGT+CGG 0.567429 1_4:-32191973 None:intergenic
GATTCAAAAGTCATCATGTA+GGG 0.569974 1_4:+32196267 Msa0160180:CDS
GATTAATTTAAACTTCGTCA+AGG 0.571624 1_4:+32198133 Msa0160180:three_prime_UTR
TCATCTCTTCCCCTTCAACA+TGG 0.572456 1_4:+32191905 Msa0160180:exon
CCCATATTGAAGAGAGAGGG+AGG 0.572831 1_4:-32192151 None:intergenic
GGAGGGAGATAAGGTCGAGG+AGG 0.575742 1_4:-32192133 None:intergenic
TCAAGATGCACAAAATGCAA+TGG 0.575984 1_4:+32197625 Msa0160180:three_prime_UTR
ACACTCGTAATATCCAAATA+CGG 0.580297 1_4:-32193213 None:intergenic
ATTTAGAGAACTTTGATGAG+TGG 0.582031 1_4:+32196437 Msa0160180:CDS
ACCTTGGGATCCAATAGTTG+GGG 0.583139 1_4:+32196471 Msa0160180:CDS
ATGTAGGGATACTAAGCCAA+TGG 0.584459 1_4:+32196282 Msa0160180:CDS
ATTCAAACCTTATCGAAACC+GGG 0.584714 1_4:-32192281 None:intergenic
AGTGAACTCGGGTGAGTCGG+TGG 0.585940 1_4:-32191970 None:intergenic
CTCCAAATCGCGTGTCAACT+CGG 0.589593 1_4:+32192092 Msa0160180:CDS
ATTTGGAGGAGTGAGACGGT+GGG 0.590066 1_4:-32192077 None:intergenic
GATTAATTTAAACTTCGTCA+AGG 0.591089 1_4:+32198265 Msa0160180:three_prime_UTR
GAGAACTTTGATGAGTGGCA+AGG 0.591373 1_4:+32196442 Msa0160180:CDS
GATTTGGAGGAGTGAGACGG+TGG 0.592283 1_4:-32192078 None:intergenic
ACAATGATAATTCATCCGAC+AGG 0.595834 1_4:-32197027 None:intergenic
TTCAGGTGATACCTTCAGCA+GGG 0.596087 1_4:+32196239 Msa0160180:CDS
CGAGTTAGGTGAGTGAACTC+GGG 0.599637 1_4:-32191981 None:intergenic
CTGTCACCAACTTTATTGGG+AGG 0.600563 1_4:+32197762 Msa0160180:three_prime_UTR
GTTGTGACCAATCACTACAT+TGG 0.602180 1_4:-32195150 None:intergenic
GTTCCCATATTGAAGAGAGA+GGG 0.604804 1_4:-32192154 None:intergenic
GATGCACAAAATGCAATGGA+AGG 0.607518 1_4:+32197629 Msa0160180:three_prime_UTR
GGTTCCCATATTGAAGAGAG+AGG 0.608783 1_4:-32192155 None:intergenic
TCGTCGGACTCGACGCCGAG+TGG 0.612313 1_4:+32192024 Msa0160180:CDS
GTGACGAAGTGGATTTCGAG+AGG 0.612730 1_4:-32191945 None:intergenic
CAGCAACAACAGTTGAGAGA+AGG 0.613102 1_4:-32198396 None:intergenic
TCTTCAAGTAATCCCTGATG+TGG 0.613317 1_4:-32198465 None:intergenic
TCTGAATGATAAATGCCGTA+TGG 0.614774 1_4:+32198527 Msa0160180:three_prime_UTR
GAACTCGGGTGAGTCGGTGG+TGG 0.616952 1_4:-32191967 None:intergenic
CCATATTGAAGAGAGAGGGA+GGG 0.618013 1_4:-32192150 None:intergenic
AAGGATGTGCACGTGAGTAA+TGG 0.620225 1_4:+32198152 Msa0160180:three_prime_UTR
AGTCGGTGGTGGTGACGAAG+TGG 0.632308 1_4:-32191956 None:intergenic
CTCGGCGTCGAGTCCGACGA+GGG 0.632562 1_4:-32192021 None:intergenic
AAGGATGTGCACGTGAGTAG+TGG 0.634956 1_4:+32198284 Msa0160180:three_prime_UTR
TTTGGAGGAGTGAGACGGTG+GGG 0.638956 1_4:-32192076 None:intergenic
TCGGTGGATCCATGTTGAAG+GGG 0.645315 1_4:-32191914 None:intergenic
TCAGGTGATACCTTCAGCAG+GGG 0.648948 1_4:+32196240 Msa0160180:CDS
CGCGATTTGGAGGAGTGAGA+CGG 0.650990 1_4:-32192081 None:intergenic
CTAACTCAAACCTCCCTCGT+CGG 0.652710 1_4:+32192008 Msa0160180:CDS
ACTCGGCGTCGAGTCCGACG+AGG 0.653753 1_4:-32192022 None:intergenic
TTGTCACCAAAAGCTAACAA+TGG 0.658647 1_4:-32198597 None:intergenic
AACTATTGGATCCCAAGGTG+CGG 0.659265 1_4:-32196467 None:intergenic
AAAAGCTAACAATGGCTGAG+TGG 0.666874 1_4:-32198589 None:intergenic
GGCGTCGAGTCCGACGAGGG+AGG 0.674089 1_4:-32192018 None:intergenic
GTGTATAAACTAATTGTACA+CGG 0.677799 1_4:-32198242 None:intergenic
AAGTGATGTATACCACATCA+GGG 0.681223 1_4:+32198453 Msa0160180:three_prime_UTR
GAAACCAGCATTTCTCGGAG+AGG 0.684392 1_4:-32192176 None:intergenic
TCCAAGCTTCAAGATATCTG+CGG 0.684999 1_4:-32192198 None:intergenic
CTTCAAAGAAGCCTGAACCA+AGG 0.685428 1_4:+32196904 Msa0160180:CDS
CCTTGGGATCCAATAGTTGG+GGG 0.730135 1_4:+32196472 Msa0160180:CDS
TGCTTACCATAACATCACAG+AGG 0.777770 1_4:-32196513 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAAAAAACTAGTTT+TGG + chr1_4:32193721-32193740 Msa0160180:intron 10.0%
!!! ATAATACTTTTCTAAATCAA+AGG - chr1_4:32193758-32193777 None:intergenic 15.0%
!! ACATGAATAAAATAATTGTA+AGG - chr1_4:32194377-32194396 None:intergenic 15.0%
!! AAAAAAACATAAATGTTCTT+TGG - chr1_4:32194621-32194640 None:intergenic 15.0%
!! ATTCTGTAACTAATAATATT+TGG - chr1_4:32194888-32194907 None:intergenic 15.0%
!! TATGTTTATTGAGTTTAAAA+AGG + chr1_4:32194910-32194929 Msa0160180:intron 15.0%
!! AAAACAAAATATAGAATCAT+TGG - chr1_4:32197918-32197937 None:intergenic 15.0%
!! ACTTATAAAACCAATTAGAA+CGG + chr1_4:32192613-32192632 Msa0160180:intron 20.0%
!! AATATAATATATGCAAAGTC+CGG + chr1_4:32192674-32192693 Msa0160180:intron 20.0%
!! AAACATACTGATAGTTATAT+TGG - chr1_4:32192870-32192889 None:intergenic 20.0%
!! CTAGTTTCTATCTTAAAAAA+AGG - chr1_4:32193797-32193816 None:intergenic 20.0%
!! AAGAATATTAAAGCTTTACA+TGG - chr1_4:32194313-32194332 None:intergenic 20.0%
!! TTTAATATTCTTCAAAGCAT+AGG + chr1_4:32194321-32194340 Msa0160180:intron 20.0%
!! TGAGTTTAAAAAGGAATAAT+AGG + chr1_4:32194919-32194938 Msa0160180:intron 20.0%
!! ATGTATATAATAGGACATAA+GGG + chr1_4:32195005-32195024 Msa0160180:intron 20.0%
!! AACTGAATTATATTTGCTTT+AGG + chr1_4:32195123-32195142 Msa0160180:intron 20.0%
!!! TATATGGCTTATTTTATAAC+TGG + chr1_4:32195528-32195547 Msa0160180:intron 20.0%
!!! TTTTTTGTCTTTTCTTGATA+TGG - chr1_4:32195592-32195611 None:intergenic 20.0%
!! TTTAAAAAATGCAAACTGAA+AGG - chr1_4:32195731-32195750 None:intergenic 20.0%
!!! TCGTTTGTTAAAATAAATAG+TGG + chr1_4:32195754-32195773 Msa0160180:intron 20.0%
!! ATATTTATTGAAATGCGTTA+TGG + chr1_4:32196733-32196752 Msa0160180:intron 20.0%
!! TAAGTTCATTATTATTTGTG+TGG + chr1_4:32196977-32196996 Msa0160180:intron 20.0%
!!! TAGAAAGATTACATATTTTG+AGG + chr1_4:32197201-32197220 Msa0160180:intron 20.0%
!! TAGTATAACATTATCTTTCA+AGG + chr1_4:32197268-32197287 Msa0160180:intron 20.0%
!!! GTATAGAATGTTAATTTTCA+TGG + chr1_4:32197307-32197326 Msa0160180:intron 20.0%
!!! ATTTGACTTAAAAAATCCAT+GGG - chr1_4:32197378-32197397 None:intergenic 20.0%
!!! AATTTGACTTAAAAAATCCA+TGG - chr1_4:32197379-32197398 None:intergenic 20.0%
!! AGTCAAATTAATATTTAACC+TGG + chr1_4:32197390-32197409 Msa0160180:intron 20.0%
!!! TACTTAGATTTCAAGTATAA+AGG + chr1_4:32197447-32197466 Msa0160180:intron 20.0%
!!! ATAAGCAATTTGGTATTTTT+TGG - chr1_4:32197708-32197727 None:intergenic 20.0%
!! TTCTTGTTAAATAAGCAATT+TGG - chr1_4:32197718-32197737 None:intergenic 20.0%
!!! TTAACAAGAATTTAGAGTTT+TGG + chr1_4:32197728-32197747 Msa0160180:three_prime_UTR 20.0%
!! GTTATGTAAGATAAATGATA+AGG - chr1_4:32197833-32197852 None:intergenic 20.0%
!! AAATAACTTCAAAACATATG+AGG - chr1_4:32197955-32197974 None:intergenic 20.0%
!!! ACCTAACTATTTAATTTCAA+CGG + chr1_4:32198430-32198449 Msa0160180:three_prime_UTR 20.0%
! GTTGTAATAATTAGTTACAC+CGG + chr1_4:32192458-32192477 Msa0160180:intron 25.0%
! ATTCTAACTTCTTAACTAAC+CGG - chr1_4:32192480-32192499 None:intergenic 25.0%
! ATATAATATATGCAAAGTCC+GGG + chr1_4:32192675-32192694 Msa0160180:intron 25.0%
!!! CTAATTGGCTTTTTTTTTTG+TGG - chr1_4:32192717-32192736 None:intergenic 25.0%
!! TAAGTACTCATTTAGAATCA+CGG + chr1_4:32192743-32192762 Msa0160180:intron 25.0%
! CAGGAATTTAATATATGTGA+TGG + chr1_4:32192894-32192913 Msa0160180:intron 25.0%
! CATCTTCAGTTTAAGAAAAA+TGG + chr1_4:32193243-32193262 Msa0160180:CDS 25.0%
! TTCAGTTTAAGAAAAATGGA+AGG + chr1_4:32193247-32193266 Msa0160180:CDS 25.0%
!!! AGCCATTCAATTCAATTTTT+TGG + chr1_4:32193359-32193378 Msa0160180:intron 25.0%
!!! GCCATTCAATTCAATTTTTT+GGG + chr1_4:32193360-32193379 Msa0160180:intron 25.0%
! ACCCAAAAAATTGAATTGAA+TGG - chr1_4:32193364-32193383 None:intergenic 25.0%
!!! CACAATTAGAAGTTAGTTTT+CGG + chr1_4:32193500-32193519 Msa0160180:intron 25.0%
! AGGAACACTAGAAAATATAT+CGG - chr1_4:32193671-32193690 None:intergenic 25.0%
! AATAATACTGTAGGATACAA+AGG - chr1_4:32193691-32193710 None:intergenic 25.0%
! TTTGTCGAAAATAATACTGT+AGG - chr1_4:32193700-32193719 None:intergenic 25.0%
! CTATCTTAAAAAAAGGAGTT+CGG - chr1_4:32193790-32193809 None:intergenic 25.0%
!!! AAAACAAGATGTTAGCTTTT+TGG - chr1_4:32193877-32193896 None:intergenic 25.0%
! AAATTTCATTCCTAAGTAGA+TGG + chr1_4:32194545-32194564 Msa0160180:intron 25.0%
! AAGACAACTTACAAAAGATT+AGG - chr1_4:32194708-32194727 None:intergenic 25.0%
! CAGTTTATGTTAATAGAAAC+AGG + chr1_4:32194982-32195001 Msa0160180:intron 25.0%
! AGAAACAGGATGTATATAAT+AGG + chr1_4:32194996-32195015 Msa0160180:intron 25.0%
! GATGTATATAATAGGACATA+AGG + chr1_4:32195004-32195023 Msa0160180:intron 25.0%
! TGTATATAATAGGACATAAG+GGG + chr1_4:32195006-32195025 Msa0160180:intron 25.0%
!! TAGCATTTTCAGTTACTATA+AGG + chr1_4:32195096-32195115 Msa0160180:intron 25.0%
! GCGAATTAATTTAAACTAGA+GGG - chr1_4:32195388-32195407 None:intergenic 25.0%
!!! CAGCATTCTATTTTTCAAAT+TGG + chr1_4:32195438-32195457 Msa0160180:intron 25.0%
!! AATTTCTTCTGAAGAGTTTA+TGG - chr1_4:32195490-32195509 None:intergenic 25.0%
! TATTCTATATCCATTCACTA+AGG + chr1_4:32196008-32196027 Msa0160180:intron 25.0%
! TACACAGAATTTCTTGTAAT+TGG + chr1_4:32196036-32196055 Msa0160180:intron 25.0%
! TTCAACAAAAATTCATCCAT+TGG - chr1_4:32196301-32196320 None:intergenic 25.0%
! TTGAAAATTGTCAGAAAACA+TGG + chr1_4:32196316-32196335 Msa0160180:CDS 25.0%
!! TTCTCTAAATGTTTTTCTCT+GGG - chr1_4:32196427-32196446 None:intergenic 25.0%
! GTTCATAAAAATTGAAGAGA+GGG - chr1_4:32196566-32196585 None:intergenic 25.0%
! TGGAGCATATAATATATGAT+CGG + chr1_4:32196663-32196682 Msa0160180:intron 25.0%
! ATAAAATGTGAGTATGAATC+TGG + chr1_4:32196810-32196829 Msa0160180:intron 25.0%
! TCAATTTCTCAAGCAATATA+TGG - chr1_4:32197524-32197543 None:intergenic 25.0%
! GATCTTCGTTAATATTTAGT+TGG - chr1_4:32197597-32197616 None:intergenic 25.0%
! TAAGATAAATGATAAGGCAA+TGG - chr1_4:32197827-32197846 None:intergenic 25.0%
! AAAACATATGAGGTGAAAAA+GGG - chr1_4:32197945-32197964 None:intergenic 25.0%
!!! ATTTATTTTGACTACGAAAG+AGG + chr1_4:32197971-32197990 Msa0160180:intron 25.0%
!!! TTTATTTTGACTACGAAAGA+GGG + chr1_4:32197972-32197991 Msa0160180:intron 25.0%
! CCTACTCTGATTTATTATTA+CGG + chr1_4:32198007-32198026 Msa0160180:intron 25.0%
! GATTAATTTAAACTTCGTCA+AGG + chr1_4:32198133-32198152 Msa0160180:three_prime_UTR 25.0%
! GTGTATAAACTAATTGTACA+CGG - chr1_4:32198245-32198264 None:intergenic 25.0%
! GATTAATTTAAACTTCGTCA+AGG + chr1_4:32198133-32198152 Msa0160180:three_prime_UTR 25.0%
! TTTAAAGGAATTGTATTCAG+TGG - chr1_4:32198312-32198331 None:intergenic 25.0%
!! CAGACGATATTTTTCTTTAA+AGG - chr1_4:32198327-32198346 None:intergenic 25.0%
! TTAAAGAAAAATATCGTCTG+CGG + chr1_4:32198327-32198346 Msa0160180:three_prime_UTR 25.0%
! TCCGTTGAAATTAAATAGTT+AGG - chr1_4:32198434-32198453 None:intergenic 25.0%
! TTAAACAAATTGCATCCATA+CGG - chr1_4:32198545-32198564 None:intergenic 25.0%
GTTAACTATAGGAGAAGAAA+TGG - chr1_4:32191870-32191889 None:intergenic 30.0%
AATTCAAACCTTATCGAAAC+CGG - chr1_4:32192285-32192304 None:intergenic 30.0%
ACTCATCGAGAATTGTAATA+TGG - chr1_4:32192387-32192406 None:intergenic 30.0%
TACCATACTACAATTCTTGA+TGG + chr1_4:32192510-32192529 Msa0160180:intron 30.0%
TTCCATCAAGAATTGTAGTA+TGG - chr1_4:32192515-32192534 None:intergenic 30.0%
TATAATATATGCAAAGTCCG+GGG + chr1_4:32192676-32192695 Msa0160180:intron 30.0%
!!! ATTGGCTTTTTTTTTTGTGG+TGG - chr1_4:32192714-32192733 None:intergenic 30.0%
GAGTACTTAGTTGTTCTAAT+TGG - chr1_4:32192732-32192751 None:intergenic 30.0%
AAAATGTAGAAGCTCCAATT+TGG - chr1_4:32192804-32192823 None:intergenic 30.0%
ACTGATAGTTATATTGGCAA+TGG - chr1_4:32192864-32192883 None:intergenic 30.0%
ACTATCAGTATGTTTAATGC+AGG + chr1_4:32192875-32192894 Msa0160180:intron 30.0%
TGTAATATGATATCAGAGTC+AGG - chr1_4:32192941-32192960 None:intergenic 30.0%
ACACTCGTAATATCCAAATA+CGG - chr1_4:32193216-32193235 None:intergenic 30.0%
AAGAGTTTGTCAACTATTTG+TGG + chr1_4:32193288-32193307 Msa0160180:CDS 30.0%
AACTATTTGTGGAGAATTGT+TGG + chr1_4:32193299-32193318 Msa0160180:CDS 30.0%
ACTATTTGTGGAGAATTGTT+GGG + chr1_4:32193300-32193319 Msa0160180:CDS 30.0%
TTGCTGTATTAAATGTAGTC+AGG + chr1_4:32193628-32193647 Msa0160180:intron 30.0%
!!! AAAACTAGTTTTGGAAGCTA+AGG + chr1_4:32193730-32193749 Msa0160180:intron 30.0%
!!! AAACTAGTTTTGGAAGCTAA+GGG + chr1_4:32193731-32193750 Msa0160180:intron 30.0%
GTCATAAACGTAGATATGTT+TGG + chr1_4:32193818-32193837 Msa0160180:intron 30.0%
! ATTTGTTAGCTTAAACTTCC+AGG - chr1_4:32193981-32194000 None:intergenic 30.0%
CCTATATAATAGAGTCTATG+TGG - chr1_4:32194162-32194181 None:intergenic 30.0%
CCACATAGACTCTATTATAT+AGG + chr1_4:32194159-32194178 Msa0160180:intron 30.0%
! CTGGCGATATTTATGTATTT+TGG - chr1_4:32194247-32194266 None:intergenic 30.0%
CAAAATACATAAATATCGCC+AGG + chr1_4:32194245-32194264 Msa0160180:intron 30.0%
ATGTCAGACATCAATATACA+CGG + chr1_4:32194393-32194412 Msa0160180:intron 30.0%
! ATATACACGGTGTCAAAATT+AGG + chr1_4:32194406-32194425 Msa0160180:intron 30.0%
!! ATTAGGTGCTTTATTTCTGT+AGG + chr1_4:32194423-32194442 Msa0160180:intron 30.0%
TTAGGAATGAAATTTGCACA+AGG - chr1_4:32194540-32194559 None:intergenic 30.0%
TTTGTTGAATCCATCTACTT+AGG - chr1_4:32194558-32194577 None:intergenic 30.0%
ACATGCTTTCTCAAATTTGT+TGG + chr1_4:32194800-32194819 Msa0160180:intron 30.0%
CTTTCAGTAAAAACCTTCTT+CGG - chr1_4:32195263-32195282 None:intergenic 30.0%
AAAGTTTCATACCAATCTCT+GGG + chr1_4:32195279-32195298 Msa0160180:intron 30.0%
CGCGAATTAATTTAAACTAG+AGG - chr1_4:32195389-32195408 None:intergenic 30.0%
! CAGAAGAAATTATGATGATG+CGG + chr1_4:32195499-32195518 Msa0160180:intron 30.0%
AAAATTATTTGTGCCATCCT+TGG + chr1_4:32195610-32195629 Msa0160180:intron 30.0%
GCAAAGTGAAACTATTAATC+AGG - chr1_4:32195656-32195675 None:intergenic 30.0%
GATGTGAAAGTAAGATCATA+TGG - chr1_4:32195977-32195996 None:intergenic 30.0%
TTTATTAAATTCTACGCTGC+AGG + chr1_4:32196061-32196080 Msa0160180:intron 30.0%
ACTTCGAATGGATAATCTAT+TGG - chr1_4:32196104-32196123 None:intergenic 30.0%
TGATTCAAAAGTCATCATGT+AGG + chr1_4:32196266-32196285 Msa0160180:CDS 30.0%
GATTCAAAAGTCATCATGTA+GGG + chr1_4:32196267-32196286 Msa0160180:CDS 30.0%
! GTTCTCTAAATGTTTTTCTC+TGG - chr1_4:32196428-32196447 None:intergenic 30.0%
ATTTAGAGAACTTTGATGAG+TGG + chr1_4:32196437-32196456 Msa0160180:CDS 30.0%
CGTTCATAAAAATTGAAGAG+AGG - chr1_4:32196567-32196586 None:intergenic 30.0%
TATACCCTTTCGTTAATCTT+TGG + chr1_4:32196592-32196611 Msa0160180:intron 30.0%
TAGTTAAATTCCAATCACTC+TGG + chr1_4:32196643-32196662 Msa0160180:intron 30.0%
ATTGAAATGCGTTATGGAAA+AGG + chr1_4:32196739-32196758 Msa0160180:intron 30.0%
CAAAACATTTACGTTGTGTT+GGG + chr1_4:32196862-32196881 Msa0160180:CDS 30.0%
AAAAAATGAACAGCTACTTG+AGG + chr1_4:32197155-32197174 Msa0160180:three_prime_UTR 30.0%
!!! ACTTGAGGTATTGTTGTTTT+AGG + chr1_4:32197170-32197189 Msa0160180:intron 30.0%
TATCTTTCAAGGAACTCTTA+TGG + chr1_4:32197279-32197298 Msa0160180:intron 30.0%
!!! CAATTTTAGCTGTGTCATTA+TGG - chr1_4:32197549-32197568 None:intergenic 30.0%
GTTGGAAAGTTTCAATAATC+TGG - chr1_4:32197579-32197598 None:intergenic 30.0%
!! TTTAGAGTTTTGGCAATGTA+TGG + chr1_4:32197738-32197757 Msa0160180:three_prime_UTR 30.0%
!! ATAGAATCATTGGTTTCAGT+TGG - chr1_4:32197908-32197927 None:intergenic 30.0%
AAACATATGAGGTGAAAAAG+GGG - chr1_4:32197944-32197963 None:intergenic 30.0%
CAAAACATATGAGGTGAAAA+AGG - chr1_4:32197946-32197965 None:intergenic 30.0%
!!! TTATTTTGACTACGAAAGAG+GGG + chr1_4:32197973-32197992 Msa0160180:intron 30.0%
CCGTAATAATAAATCAGAGT+AGG - chr1_4:32198010-32198029 None:intergenic 30.0%
TTCAATGGAAATGTATTCAG+TGG - chr1_4:32198180-32198199 None:intergenic 30.0%
! AGACTGACATTTTTCTTCAA+TGG - chr1_4:32198195-32198214 None:intergenic 30.0%
TTCAAAGACAACGTATTTAG+TGG - chr1_4:32198368-32198387 None:intergenic 30.0%
!!! GGGTTTTGGTTGTTAACTAT+AGG - chr1_4:32191881-32191900 None:intergenic 35.0%
! TCTTCTACCTTTTGTGAACA+AGG + chr1_4:32192251-32192270 Msa0160180:CDS 35.0%
ATTGCATCCTTGTTCACAAA+AGG - chr1_4:32192261-32192280 None:intergenic 35.0%
ATTCAAACCTTATCGAAACC+GGG - chr1_4:32192284-32192303 None:intergenic 35.0%
TGTTCTATTGTCGTATCTCT+TGG - chr1_4:32192591-32192610 None:intergenic 35.0%
ATTTGGCTAATGCTCCAAAT+TGG + chr1_4:32192787-32192806 Msa0160180:intron 35.0%
!!! TTTTCACGTTTTTCAAGCCT+TGG + chr1_4:32192820-32192839 Msa0160180:intron 35.0%
!!! TTTCACGTTTTTCAAGCCTT+GGG + chr1_4:32192821-32192840 Msa0160180:intron 35.0%
! GACTGGTTAGTTGTTCTAAT+TGG - chr1_4:32193070-32193089 None:intergenic 35.0%
ACTAGTCAGTTCATTTAGAC+TGG - chr1_4:32193087-32193106 None:intergenic 35.0%
CTATTTGTGGAGAATTGTTG+GGG + chr1_4:32193301-32193320 Msa0160180:CDS 35.0%
TGTGTTCAGAAAACAAGTAG+TGG + chr1_4:32193391-32193410 Msa0160180:intron 35.0%
! CAAATATCACAGCATTGAGT+AGG + chr1_4:32193439-32193458 Msa0160180:intron 35.0%
!!! AAGTTAGTTTTCGGTGTTTG+TGG + chr1_4:32193509-32193528 Msa0160180:intron 35.0%
! GAGTTTTCACTTAGCATATG+AGG + chr1_4:32193580-32193599 Msa0160180:intron 35.0%
TTGTATAAAACACATCGTCC+TGG + chr1_4:32193960-32193979 Msa0160180:intron 35.0%
! ATGGCCTTAAACTTGTATCA+TGG + chr1_4:32194020-32194039 Msa0160180:intron 35.0%
GAAGCCATGATACAAGTTTA+AGG - chr1_4:32194027-32194046 None:intergenic 35.0%
CTTAATACATGAACAGTGAG+CGG + chr1_4:32194067-32194086 Msa0160180:intron 35.0%
TTAATACATGAACAGTGAGC+GGG + chr1_4:32194068-32194087 Msa0160180:intron 35.0%
TCTCTAGTTATCTCTCATTC+AGG - chr1_4:32194099-32194118 None:intergenic 35.0%
AGATAACTAGAGACATGTGA+TGG + chr1_4:32194106-32194125 Msa0160180:intron 35.0%
GTGTAGTTCAAAGTTCAAAC+CGG - chr1_4:32194140-32194159 None:intergenic 35.0%
TTGGCAGCATTAATGTTCTT+TGG - chr1_4:32194656-32194675 None:intergenic 35.0%
ACATTAATGCTGCCAACATA+AGG + chr1_4:32194660-32194679 Msa0160180:intron 35.0%
GTTTAAACCAGTCCTTATGT+TGG - chr1_4:32194675-32194694 None:intergenic 35.0%
! TTTTGCTCCATTGGAATTTC+AGG + chr1_4:32195054-32195073 Msa0160180:intron 35.0%
! TTTGGAACCTGAAATTCCAA+TGG - chr1_4:32195064-32195083 None:intergenic 35.0%
!! ATTTCAGGTTCCAAAGACTT+TGG + chr1_4:32195069-32195088 Msa0160180:intron 35.0%
TTGCTTGCTCGGAATATTTA+AGG + chr1_4:32195219-32195238 Msa0160180:CDS 35.0%
! CGGAATATTTAAGGTCTTTC+AGG + chr1_4:32195228-32195247 Msa0160180:CDS 35.0%
! ATTTAAGGTCTTTCAGGCAA+CGG + chr1_4:32195234-32195253 Msa0160180:CDS 35.0%
GAAAGTTTCATACCAATCTC+TGG + chr1_4:32195278-32195297 Msa0160180:intron 35.0%
TTGGATCGATTAAGTTTGAC+TGG + chr1_4:32195457-32195476 Msa0160180:intron 35.0%
GATGATGCGGAAAAGATATA+TGG + chr1_4:32195512-32195531 Msa0160180:intron 35.0%
TTCTTGATATGGAACTCAAG+TGG - chr1_4:32195581-32195600 None:intergenic 35.0%
CAAATGGAAAATTCCAAGGA+TGG - chr1_4:32195626-32195645 None:intergenic 35.0%
GACACAAATGGAAAATTCCA+AGG - chr1_4:32195630-32195649 None:intergenic 35.0%
TTAATCAGGCAAGACACAAA+TGG - chr1_4:32195642-32195661 None:intergenic 35.0%
TTGACCAAGTAGCAGATTAT+TGG + chr1_4:32195684-32195703 Msa0160180:intron 35.0%
TGACCAAGTAGCAGATTATT+GGG + chr1_4:32195685-32195704 Msa0160180:intron 35.0%
TGCATCACTTGTAAAGACAA+TGG + chr1_4:32195848-32195867 Msa0160180:intron 35.0%
GTGTATACATCCTTAGTGAA+TGG - chr1_4:32196021-32196040 None:intergenic 35.0%
! CACACAATTTTGTGAAGCTT+TGG + chr1_4:32196183-32196202 Msa0160180:CDS 35.0%
TTCTTGTTCTGATGTTGTTC+AGG + chr1_4:32196222-32196241 Msa0160180:CDS 35.0%
TTGTCAGAAAACATGGTGAT+AGG + chr1_4:32196323-32196342 Msa0160180:CDS 35.0%
! TGGTGATAGGATTTTGCTAA+AGG + chr1_4:32196336-32196355 Msa0160180:CDS 35.0%
!!! CGTTTCTTTTTTGAGGTCTT+GGG - chr1_4:32196376-32196395 None:intergenic 35.0%
CCAAGACCTCAAAAAAGAAA+CGG + chr1_4:32196374-32196393 Msa0160180:CDS 35.0%
!!! CTTCTTCCGTTTCTTTTTTG+AGG - chr1_4:32196383-32196402 None:intergenic 35.0%
AAGAAGCAGTTGCCAATTAA+TGG + chr1_4:32196397-32196416 Msa0160180:CDS 35.0%
AGAAGCAGTTGCCAATTAAT+GGG + chr1_4:32196398-32196417 Msa0160180:CDS 35.0%
ATAACATCACAGAGGAACTT+TGG - chr1_4:32196508-32196527 None:intergenic 35.0%
AAAGTTCCTCTGTGATGTTA+TGG + chr1_4:32196507-32196526 Msa0160180:CDS 35.0%
ACCTCCAAAGATTAACGAAA+GGG - chr1_4:32196599-32196618 None:intergenic 35.0%
AACCTCCAAAGATTAACGAA+AGG - chr1_4:32196600-32196619 None:intergenic 35.0%
! ATCTTTGGAGGTTAAGCAAT+AGG + chr1_4:32196607-32196626 Msa0160180:intron 35.0%
ATTATATGCTCCAGAGTGAT+TGG - chr1_4:32196656-32196675 None:intergenic 35.0%
AATGCGTTATGGAAAAGGAA+AGG + chr1_4:32196744-32196763 Msa0160180:intron 35.0%
ATGTGAGTATGAATCTGGTA+AGG + chr1_4:32196815-32196834 Msa0160180:intron 35.0%
ATCTGGTAAGGAATATACTC+AGG + chr1_4:32196827-32196846 Msa0160180:intron 35.0%
!! AAGGAATATACTCAGGTTGA+AGG + chr1_4:32196834-32196853 Msa0160180:intron 35.0%
GCAAAACATTTACGTTGTGT+TGG + chr1_4:32196861-32196880 Msa0160180:CDS 35.0%
ATACTCTATTACCTTGGTTC+AGG - chr1_4:32196918-32196937 None:intergenic 35.0%
! AGAAGCATACTCTATTACCT+TGG - chr1_4:32196924-32196943 None:intergenic 35.0%
CATTATTATTTGTGTGGCAG+CGG + chr1_4:32196983-32197002 Msa0160180:intron 35.0%
! TTCTATTTTCCTCTTCCTGT+CGG + chr1_4:32197012-32197031 Msa0160180:CDS 35.0%
ACAATGATAATTCATCCGAC+AGG - chr1_4:32197030-32197049 None:intergenic 35.0%
!!! AGAAAAGAGTGCTTTTGACA+CGG + chr1_4:32197079-32197098 Msa0160180:three_prime_UTR 35.0%
ACCATGCAAAAAATGAGCTA+GGG - chr1_4:32197483-32197502 None:intergenic 35.0%
TCAAGATGCACAAAATGCAA+TGG + chr1_4:32197625-32197644 Msa0160180:three_prime_UTR 35.0%
ACAATACCTCCCAATAAAGT+TGG - chr1_4:32197771-32197790 None:intergenic 35.0%
AGTTGGATTAAGTAAGCGTT+TGG - chr1_4:32197891-32197910 None:intergenic 35.0%
AACATATGAGGTGAAAAAGG+GGG - chr1_4:32197943-32197962 None:intergenic 35.0%
TATTGTGCCTGTCATATTCA+GGG + chr1_4:32198055-32198074 Msa0160180:intron 35.0%
TGAAGAAAAATGTCAGTCTG+TGG + chr1_4:32198196-32198215 Msa0160180:three_prime_UTR 35.0%
AAGTGATGTATACCACATCA+GGG + chr1_4:32198453-32198472 Msa0160180:three_prime_UTR 35.0%
TCTGAATGATAAATGCCGTA+TGG + chr1_4:32198527-32198546 Msa0160180:three_prime_UTR 35.0%
TTGTCACCAAAAGCTAACAA+TGG - chr1_4:32198600-32198619 None:intergenic 35.0%
! GAAGAGATGAATGAGGGTTT+TGG - chr1_4:32191895-32191914 None:intergenic 40.0%
!! ATTTCGAGAGGTTTCTGGTT+CGG - chr1_4:32191936-32191955 None:intergenic 40.0%
! TTTGAGTTAGGGAACGAGTT+AGG - chr1_4:32191998-32192017 None:intergenic 40.0%
!! GGAATGAGTTTTGGTGAGTT+CGG - chr1_4:32192058-32192077 None:intergenic 40.0%
GTTCCCATATTGAAGAGAGA+GGG - chr1_4:32192157-32192176 None:intergenic 40.0%
TCCAAGCTTCAAGATATCTG+CGG - chr1_4:32192201-32192220 None:intergenic 40.0%
!!! TTTTTTTTTTGTGGTGGCCG+GGG - chr1_4:32192708-32192727 None:intergenic 40.0%
!!! CTTTTTTTTTTGTGGTGGCC+GGG - chr1_4:32192709-32192728 None:intergenic 40.0%
!!! GCTTTTTTTTTTGTGGTGGC+CGG - chr1_4:32192710-32192729 None:intergenic 40.0%
! GTACTCATTTAGAATCACGG+TGG + chr1_4:32192746-32192765 Msa0160180:intron 40.0%
TAGCCAAATGCACAATAGGT+GGG - chr1_4:32192776-32192795 None:intergenic 40.0%
TTAGCCAAATGCACAATAGG+TGG - chr1_4:32192777-32192796 None:intergenic 40.0%
GCATTAGCCAAATGCACAAT+AGG - chr1_4:32192780-32192799 None:intergenic 40.0%
GTTGTGATGATTCGTGTTTG+TGG + chr1_4:32193170-32193189 Msa0160180:intron 40.0%
TTCGTGTTTGTGGTGAATTG+TGG + chr1_4:32193180-32193199 Msa0160180:intron 40.0%
GTTGGGGATTTCACTATCTA+AGG + chr1_4:32193317-32193336 Msa0160180:CDS 40.0%
AGAGAATGAGTGCACATGAA+TGG + chr1_4:32194001-32194020 Msa0160180:intron 40.0%
TTCTCTCACAAGAGTCAGTT+AGG + chr1_4:32194044-32194063 Msa0160180:intron 40.0%
TCAAAGCATAGGTTGCAAGT+TGG + chr1_4:32194332-32194351 Msa0160180:intron 40.0%
GAATGTGTTCTGCATCAAGA+AGG + chr1_4:32194464-32194483 Msa0160180:intron 40.0%
! AAGCATGTGTTTTGCTCCAT+TGG + chr1_4:32195045-32195064 Msa0160180:intron 40.0%
ATGCTAGTTGCCAAAGTCTT+TGG - chr1_4:32195082-32195101 None:intergenic 40.0%
GTTGTGACCAATCACTACAT+TGG - chr1_4:32195153-32195172 None:intergenic 40.0%
! TCTATAGTTTGCCCAGAGAT+TGG - chr1_4:32195293-32195312 None:intergenic 40.0%
ACGAAATACAACACAACCAG+AGG - chr1_4:32195316-32195335 None:intergenic 40.0%
! TGAGACTTTGCTGCATTGAT+TGG + chr1_4:32195349-32195368 Msa0160180:intron 40.0%
CTTCCCAATAATCTGCTACT+TGG - chr1_4:32195691-32195710 None:intergenic 40.0%
TCCATTCGAAGTGCAAATCT+TGG + chr1_4:32196112-32196131 Msa0160180:CDS 40.0%
CCATTCGAAGTGCAAATCTT+GGG + chr1_4:32196113-32196132 Msa0160180:CDS 40.0%
!! TTGGGTTGAAAGAGCTATTC+AGG + chr1_4:32196131-32196150 Msa0160180:CDS 40.0%
ATGTAGGGATACTAAGCCAA+TGG + chr1_4:32196282-32196301 Msa0160180:CDS 40.0%
!!! CCGTTTCTTTTTTGAGGTCT+TGG - chr1_4:32196377-32196396 None:intergenic 40.0%
TGCTTACCATAACATCACAG+AGG - chr1_4:32196516-32196535 None:intergenic 40.0%
ACCCTTTCGTTAATCTTTGG+AGG + chr1_4:32196595-32196614 Msa0160180:intron 40.0%
!! ATATACTCAGGTTGAAGGCT+TGG + chr1_4:32196839-32196858 Msa0160180:intron 40.0%
ATAATTCATCCGACAGGAAG+AGG - chr1_4:32197024-32197043 None:intergenic 40.0%
!!! GAAAAGAGTGCTTTTGACAC+GGG + chr1_4:32197080-32197099 Msa0160180:three_prime_UTR 40.0%
TCAAGGAACTCTTATGGAGT+AGG + chr1_4:32197285-32197304 Msa0160180:intron 40.0%
ACAGCAAAGACAAACTTTCC+AGG - chr1_4:32197411-32197430 None:intergenic 40.0%
ATGCAAAAAATGAGCTAGGG+AGG - chr1_4:32197480-32197499 None:intergenic 40.0%
!!! TCCCTAGCTCATTTTTTGCA+TGG + chr1_4:32197479-32197498 Msa0160180:intron 40.0%
CACCATGCAAAAAATGAGCT+AGG - chr1_4:32197484-32197503 None:intergenic 40.0%
!!! CTAGCTCATTTTTTGCATGG+TGG + chr1_4:32197482-32197501 Msa0160180:intron 40.0%
GATGCACAAAATGCAATGGA+AGG + chr1_4:32197629-32197648 Msa0160180:three_prime_UTR 40.0%
ATAGCCTCTTCAGTTGAAAG+TGG - chr1_4:32197667-32197686 None:intergenic 40.0%
TGGACTGTCACCAACTTTAT+TGG + chr1_4:32197758-32197777 Msa0160180:three_prime_UTR 40.0%
GGACTGTCACCAACTTTATT+GGG + chr1_4:32197759-32197778 Msa0160180:three_prime_UTR 40.0%
ACATATGAGGTGAAAAAGGG+GGG - chr1_4:32197942-32197961 None:intergenic 40.0%
GTATTGTGCCTGTCATATTC+AGG + chr1_4:32198054-32198073 Msa0160180:intron 40.0%
CTGTACTGCATTATGGTACT+GGG - chr1_4:32198083-32198102 None:intergenic 40.0%
TCTGTACTGCATTATGGTAC+TGG - chr1_4:32198084-32198103 None:intergenic 40.0%
CGAACTTCTGTACTGCATTA+TGG - chr1_4:32198090-32198109 None:intergenic 40.0%
TCGTCTGCGGTTTAATGTAA+TGG + chr1_4:32198340-32198359 Msa0160180:three_prime_UTR 40.0%
GAAGTGATGTATACCACATC+AGG + chr1_4:32198452-32198471 Msa0160180:three_prime_UTR 40.0%
TCTTCAAGTAATCCCTGATG+TGG - chr1_4:32198468-32198487 None:intergenic 40.0%
AAAAGCTAACAATGGCTGAG+TGG - chr1_4:32198592-32198611 None:intergenic 40.0%
!!! ACTCAGCCATTGTTAGCTTT+TGG + chr1_4:32198591-32198610 Msa0160180:three_prime_UTR 40.0%
GAAGGGGAAGAGATGAATGA+GGG - chr1_4:32191901-32191920 None:intergenic 45.0%
TGAAGGGGAAGAGATGAATG+AGG - chr1_4:32191902-32191921 None:intergenic 45.0%
TCATCTCTTCCCCTTCAACA+TGG + chr1_4:32191905-32191924 Msa0160180:exon 45.0%
TTCGGTGGATCCATGTTGAA+GGG - chr1_4:32191918-32191937 None:intergenic 45.0%
! AGTGGATTTCGAGAGGTTTC+TGG - chr1_4:32191941-32191960 None:intergenic 45.0%
ACGAGTTAGGTGAGTGAACT+CGG - chr1_4:32191985-32192004 None:intergenic 45.0%
!! TGAGTTTTGGTGAGTTCGGA+CGG - chr1_4:32192054-32192073 None:intergenic 45.0%
CCATATTGAAGAGAGAGGGA+GGG - chr1_4:32192153-32192172 None:intergenic 45.0%
CCTCCCTCTCTCTTCAATAT+GGG + chr1_4:32192151-32192170 Msa0160180:CDS 45.0%
GGTTCCCATATTGAAGAGAG+AGG - chr1_4:32192158-32192177 None:intergenic 45.0%
TCCGCAGATATCTTGAAGCT+TGG + chr1_4:32192197-32192216 Msa0160180:CDS 45.0%
TGTGAACAAGGATGCAATCC+CGG + chr1_4:32192263-32192282 Msa0160180:CDS 45.0%
ATGCAATCCCGGTTTCGATA+AGG + chr1_4:32192274-32192293 Msa0160180:CDS 45.0%
CTCATGAGGACCGTTCTAAT+TGG - chr1_4:32192626-32192645 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr1_4:32192642-32192661 Msa0160180:intron 45.0%
TACCCCACCTATTGTGCATT+TGG + chr1_4:32192770-32192789 Msa0160180:intron 45.0%
AGCCAAATGCACAATAGGTG+GGG - chr1_4:32192775-32192794 None:intergenic 45.0%
CTCAACTATGAGTTCGATCG+AGG - chr1_4:32192966-32192985 None:intergenic 45.0%
GTTTGTGGTGAATTGTGGAC+AGG + chr1_4:32193185-32193204 Msa0160180:intron 45.0%
! TGGACAGGTTGAACCGTATT+TGG + chr1_4:32193200-32193219 Msa0160180:intron 45.0%
! ACATGTGATGGTGAAACTGC+CGG + chr1_4:32194118-32194137 Msa0160180:intron 45.0%
AGTCAGTCACTATTCAGACC+TGG - chr1_4:32194266-32194285 None:intergenic 45.0%
CTGAATAGTGACTGACTGCA+AGG + chr1_4:32194269-32194288 Msa0160180:intron 45.0%
AATGCTGCCAACATAAGGAC+TGG + chr1_4:32194665-32194684 Msa0160180:intron 45.0%
AGGAGCTCCAATGTAGTGAT+TGG + chr1_4:32195143-32195162 Msa0160180:intron 45.0%
! GTCATCTGGTCTTCTGTAAG+AGG - chr1_4:32195178-32195197 None:intergenic 45.0%
CCATAGCTGCATATGTCATC+TGG - chr1_4:32195192-32195211 None:intergenic 45.0%
CCAGATGACATATGCAGCTA+TGG + chr1_4:32195189-32195208 Msa0160180:CDS 45.0%
ATGGATGCTCATTGCTTGCT+CGG + chr1_4:32195208-32195227 Msa0160180:CDS 45.0%
CCCAAGATTTGCACTTCGAA+TGG - chr1_4:32196116-32196135 None:intergenic 45.0%
TTCAGGTGATACCTTCAGCA+GGG + chr1_4:32196239-32196258 Msa0160180:CDS 45.0%
! TCTCTGGGAAGCCCATTAAT+TGG - chr1_4:32196412-32196431 None:intergenic 45.0%
GAGAACTTTGATGAGTGGCA+AGG + chr1_4:32196442-32196461 Msa0160180:CDS 45.0%
AACTATTGGATCCCAAGGTG+CGG - chr1_4:32196470-32196489 None:intergenic 45.0%
CACCTTGGGATCCAATAGTT+GGG + chr1_4:32196470-32196489 Msa0160180:CDS 45.0%
ACCTTGGGATCCAATAGTTG+GGG + chr1_4:32196471-32196490 Msa0160180:CDS 45.0%
TATCCATCTCCCCCAACTAT+TGG - chr1_4:32196484-32196503 None:intergenic 45.0%
! GGTTCAGGCTTCTTTGAAGA+AGG - chr1_4:32196903-32196922 None:intergenic 45.0%
CTTCAAAGAAGCCTGAACCA+AGG + chr1_4:32196904-32196923 Msa0160180:CDS 45.0%
AATGTGCTCCCTGCTCATAA+CGG + chr1_4:32197339-32197358 Msa0160180:intron 45.0%
! GAAGCCACTTTCAACTGAAG+AGG + chr1_4:32197660-32197679 Msa0160180:three_prime_UTR 45.0%
AGAGGCTATTGAAGCTGCAA+AGG + chr1_4:32197678-32197697 Msa0160180:three_prime_UTR 45.0%
GAGGCTATTGAAGCTGCAAA+GGG + chr1_4:32197679-32197698 Msa0160180:three_prime_UTR 45.0%
CTGTCACCAACTTTATTGGG+AGG + chr1_4:32197762-32197781 Msa0160180:three_prime_UTR 45.0%
CAACTCGCAACAAACTGAAC+AGG - chr1_4:32197797-32197816 None:intergenic 45.0%
AAGGATGTGCACGTGAGTAA+TGG + chr1_4:32198152-32198171 Msa0160180:three_prime_UTR 45.0%
CAGCAACAACAGTTGAGAGA+AGG - chr1_4:32198399-32198418 None:intergenic 45.0%
TCGGTGGATCCATGTTGAAG+GGG - chr1_4:32191917-32191936 None:intergenic 50.0%
! GTTCGGTGGATCCATGTTGA+AGG - chr1_4:32191919-32191938 None:intergenic 50.0%
! GTGACGAAGTGGATTTCGAG+AGG - chr1_4:32191948-32191967 None:intergenic 50.0%
CGAGTTAGGTGAGTGAACTC+GGG - chr1_4:32191984-32192003 None:intergenic 50.0%
! GACGAGGGAGGTTTGAGTTA+GGG - chr1_4:32192009-32192028 None:intergenic 50.0%
CTAACTCAAACCTCCCTCGT+CGG + chr1_4:32192008-32192027 Msa0160180:CDS 50.0%
!! GAGTTTTGGTGAGTTCGGAC+GGG - chr1_4:32192053-32192072 None:intergenic 50.0%
! AGACGGTGGGGAATGAGTTT+TGG - chr1_4:32192067-32192086 None:intergenic 50.0%
ATTTGGAGGAGTGAGACGGT+GGG - chr1_4:32192080-32192099 None:intergenic 50.0%
CTCCAAATCGCGTGTCAACT+CGG + chr1_4:32192092-32192111 Msa0160180:CDS 50.0%
AAGAGAGAGGGAGGGAGATA+AGG - chr1_4:32192145-32192164 None:intergenic 50.0%
CCCTCCCTCTCTCTTCAATA+TGG + chr1_4:32192150-32192169 Msa0160180:CDS 50.0%
CCCATATTGAAGAGAGAGGG+AGG - chr1_4:32192154-32192173 None:intergenic 50.0%
GAAACCAGCATTTCTCGGAG+AGG - chr1_4:32192179-32192198 None:intergenic 50.0%
CTGCGGAAACCAGCATTTCT+CGG - chr1_4:32192184-32192203 None:intergenic 50.0%
CCAACTGAGCTAAGCTCATG+AGG - chr1_4:32192640-32192659 None:intergenic 50.0%
CCTCATGAGCTTAGCTCAGT+TGG + chr1_4:32192637-32192656 Msa0160180:intron 50.0%
GTATACATTCTCGCGTCCCA+AGG - chr1_4:32192840-32192859 None:intergenic 50.0%
CTGGGCAAACTATAGACCTC+TGG + chr1_4:32195297-32195316 Msa0160180:intron 50.0%
ATTCTACGCTGCAGGAGAGT+TGG + chr1_4:32196069-32196088 Msa0160180:intron 50.0%
GTTCAGGTGATACCTTCAGC+AGG + chr1_4:32196238-32196257 Msa0160180:CDS 50.0%
TCAGGTGATACCTTCAGCAG+GGG + chr1_4:32196240-32196259 Msa0160180:CDS 50.0%
GCACCTTGGGATCCAATAGT+TGG + chr1_4:32196469-32196488 Msa0160180:CDS 50.0%
CCTTGGGATCCAATAGTTGG+GGG + chr1_4:32196472-32196491 Msa0160180:CDS 50.0%
GATCCAATAGTTGGGGGAGA+TGG + chr1_4:32196478-32196497 Msa0160180:CDS 50.0%
ATGTGCTCCCTGCTCATAAC+GGG + chr1_4:32197340-32197359 Msa0160180:intron 50.0%
ACTCTAGCCCGTTATGAGCA+GGG - chr1_4:32197350-32197369 None:intergenic 50.0%
AACTCTAGCCCGTTATGAGC+AGG - chr1_4:32197351-32197370 None:intergenic 50.0%
CTGGGTTCCCTGAATATGAC+AGG - chr1_4:32198065-32198084 None:intergenic 50.0%
AAGGATGTGCACGTGAGTAG+TGG + chr1_4:32198284-32198303 Msa0160180:three_prime_UTR 50.0%
!! TCGAGAGGTTTCTGGTTCGG+TGG - chr1_4:32191933-32191952 None:intergenic 55.0%
GTGAGTGAACTCGGGTGAGT+CGG - chr1_4:32191976-32191995 None:intergenic 55.0%
! CGACGAGGGAGGTTTGAGTT+AGG - chr1_4:32192010-32192029 None:intergenic 55.0%
! AGTTCGGACGGGTTTCCACT+CGG - chr1_4:32192042-32192061 None:intergenic 55.0%
TTTGGAGGAGTGAGACGGTG+GGG - chr1_4:32192079-32192098 None:intergenic 55.0%
GATTTGGAGGAGTGAGACGG+TGG - chr1_4:32192081-32192100 None:intergenic 55.0%
! CGCGATTTGGAGGAGTGAGA+CGG - chr1_4:32192084-32192103 None:intergenic 55.0%
! CGAGTTGACACGCGATTTGG+AGG - chr1_4:32192094-32192113 None:intergenic 55.0%
GGAACCTCTCCGAGAAATGC+TGG + chr1_4:32192172-32192191 Msa0160180:CDS 55.0%
AAAGTCCGGGGTTCAAACCC+CGG + chr1_4:32192688-32192707 Msa0160180:intron 55.0%
TGAATCACTGCCCCTGCTGA+AGG - chr1_4:32196253-32196272 None:intergenic 55.0%
CCCCCAACTATTGGATCCCA+AGG - chr1_4:32196475-32196494 None:intergenic 55.0%
! AGTCGGTGGTGGTGACGAAG+TGG - chr1_4:32191959-32191978 None:intergenic 60.0%
AGTGAACTCGGGTGAGTCGG+TGG - chr1_4:32191973-32191992 None:intergenic 60.0%
! CGCCGAGTTGACACGCGATT+TGG - chr1_4:32192097-32192116 None:intergenic 60.0%
GGAGGGAGATAAGGTCGAGG+AGG - chr1_4:32192136-32192155 None:intergenic 60.0%
GAGGGAGGGAGATAAGGTCG+AGG - chr1_4:32192139-32192158 None:intergenic 60.0%
CAGGCAACGGTTGCCGAAGA+AGG + chr1_4:32195247-32195266 Msa0160180:CDS 60.0%
!! AGTGGCAAGGTACCGCACCT+TGG + chr1_4:32196455-32196474 Msa0160180:CDS 60.0%
!! GTGGCAAGGTACCGCACCTT+GGG + chr1_4:32196456-32196475 Msa0160180:CDS 60.0%
! CGGGCTAGAGTTTGAGCCCA+TGG + chr1_4:32197359-32197378 Msa0160180:intron 60.0%
GAACTCGGGTGAGTCGGTGG+TGG - chr1_4:32191970-32191989 None:intergenic 65.0%
! CTCGGCGTCGAGTCCGACGA+GGG - chr1_4:32192024-32192043 None:intergenic 70.0%
! ACTCGGCGTCGAGTCCGACG+AGG - chr1_4:32192025-32192044 None:intergenic 70.0%
TCGTCGGACTCGACGCCGAG+TGG + chr1_4:32192024-32192043 Msa0160180:CDS 70.0%
GGTGGCCGGGGTTTGAACCC+CGG - chr1_4:32192696-32192715 None:intergenic 70.0%
! GGCGTCGAGTCCGACGAGGG+AGG - chr1_4:32192021-32192040 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 32191847 32198668 32191847 ID=Msa0160180;Name=Msa0160180
chr1_4 mRNA 32191847 32198668 32191847 ID=Msa0160180-mRNA-1;Parent=Msa0160180;Name=Msa0160180-mRNA-1;_AED=0.14;_eAED=0.14;_QI=77|1|1|1|1|0.87|8|913|402
chr1_4 exon 32191847 32192295 32191847 ID=Msa0160180-mRNA-1:exon:10150;Parent=Msa0160180-mRNA-1
chr1_4 exon 32193207 32193338 32193207 ID=Msa0160180-mRNA-1:exon:10151;Parent=Msa0160180-mRNA-1
chr1_4 exon 32195145 32195268 32195145 ID=Msa0160180-mRNA-1:exon:10152;Parent=Msa0160180-mRNA-1
chr1_4 exon 32196083 32196528 32196083 ID=Msa0160180-mRNA-1:exon:10153;Parent=Msa0160180-mRNA-1
chr1_4 exon 32196849 32196925 32196849 ID=Msa0160180-mRNA-1:exon:10154;Parent=Msa0160180-mRNA-1
chr1_4 exon 32197003 32197176 32197003 ID=Msa0160180-mRNA-1:exon:10155;Parent=Msa0160180-mRNA-1
chr1_4 exon 32197580 32197783 32197580 ID=Msa0160180-mRNA-1:exon:10156;Parent=Msa0160180-mRNA-1
chr1_4 exon 32198076 32198668 32198076 ID=Msa0160180-mRNA-1:exon:10157;Parent=Msa0160180-mRNA-1
chr1_4 five_prime_UTR 32191847 32191923 32191847 ID=Msa0160180-mRNA-1:five_prime_utr;Parent=Msa0160180-mRNA-1
chr1_4 CDS 32191924 32192295 32191924 ID=Msa0160180-mRNA-1:cds;Parent=Msa0160180-mRNA-1
chr1_4 CDS 32193207 32193338 32193207 ID=Msa0160180-mRNA-1:cds;Parent=Msa0160180-mRNA-1
chr1_4 CDS 32195145 32195268 32195145 ID=Msa0160180-mRNA-1:cds;Parent=Msa0160180-mRNA-1
chr1_4 CDS 32196083 32196528 32196083 ID=Msa0160180-mRNA-1:cds;Parent=Msa0160180-mRNA-1
chr1_4 CDS 32196849 32196925 32196849 ID=Msa0160180-mRNA-1:cds;Parent=Msa0160180-mRNA-1
chr1_4 CDS 32197003 32197060 32197003 ID=Msa0160180-mRNA-1:cds;Parent=Msa0160180-mRNA-1
chr1_4 three_prime_UTR 32197061 32197176 32197061 ID=Msa0160180-mRNA-1:three_prime_utr;Parent=Msa0160180-mRNA-1
chr1_4 three_prime_UTR 32197580 32197783 32197580 ID=Msa0160180-mRNA-1:three_prime_utr;Parent=Msa0160180-mRNA-1
chr1_4 three_prime_UTR 32198076 32198668 32198076 ID=Msa0160180-mRNA-1:three_prime_utr;Parent=Msa0160180-mRNA-1
Gene Sequence

>Msa0160180

ATGGATCCACCGAACCAGAAACCTCTCGAAATCCACTTCGTCACCACCACCGACTCACCCGAGTTCACTCACCTAACTCGTTCCCTAACTCAAACCTCCCTCGTCGGACTCGACGCCGAGTGGAAACCCGTCCGAACTCACCAAAACTCATTCCCCACCGTCTCACTCCTCCAAATCGCGTGTCAACTCGGCGACGACGAAGTAGTTTTCCTCCTCGACCTTATCTCCCTCCCTCTCTCTTCAATATGGGAACCTCTCCGAGAAATGCTGGTTTCCGCAGATATCTTGAAGCTTGGATTCAGATTCAAACAAGATTTAGTTTACTTATCTTCTACCTTTTGTGAACAAGGATGCAATCCCGGTTTCGATAAGGTTGAACCGTATTTGGATATTACGAGTGTGTACAATCATCTTCAGTTTAAGAAAAATGGAAGGATTGCATCGAAGCAGAATAAGAGTTTGTCAACTATTTGTGGAGAATTGTTGGGGATTTCACTATCTAAGGAGCTCCAATGTAGTGATTGGTCACAACGTCCTCTTACAGAAGACCAGATGACATATGCAGCTATGGATGCTCATTGCTTGCTCGGAATATTTAAGGTCTTTCAGGCAACGGTTGCCGAAGAAGGAGAGTTGGTTAACAAGACCAATAGATTATCCATTCGAAGTGCAAATCTTGGGTTGAAAGAGCTATTCAGGAAGCATGATATGAGTGATAAAGTTCATAGCACACAATTTTGTGAAGCTTTGGCAATTGTTCAAGCTACTTCTTGTTCTGATGTTGTTCAGGTGATACCTTCAGCAGGGGCAGTGATTCAAAAGTCATCATGTAGGGATACTAAGCCAATGGATGAATTTTTGTTGAAAATTGTCAGAAAACATGGTGATAGGATTTTGCTAAAGGAGTCAGACAGAGCGCCCAAGACCTCAAAAAAGAAACGGAAGAAGCAGTTGCCAATTAATGGGCTTCCCAGAGAAAAACATTTAGAGAACTTTGATGAGTGGCAAGGTACCGCACCTTGGGATCCAATAGTTGGGGGAGATGGATATCCAAAGTTCCTCTGTGATGTTATGGTTGAAGGCTTGGCAAAACATTTACGTTGTGTTGGGATAGATGCTGCAGTTCCTTCTTCAAAGAAGCCTGAACCAAGCGGATCTAATTCTATTTTCCTCTTCCTGTCGGATGAATTATCATTGTCAGAGAGTTAA
Protein sequence

>Msa0160180

MDPPNQKPLEIHFVTTTDSPEFTHLTRSLTQTSLVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEVVFLLDLISLPLSSIWEPLREMLVSADILKLGFRFKQDLVYLSSTFCEQGCNPGFDKVEPYLDITSVYNHLQFKKNGRIASKQNKSLSTICGELLGISLSKELQCSDWSQRPLTEDQMTYAAMDAHCLLGIFKVFQATVAEEGELVNKTNRLSIRSANLGLKELFRKHDMSDKVHSTQFCEALAIVQATSCSDVVQVIPSAGAVIQKSSCRDTKPMDEFLLKIVRKHGDRILLKESDRAPKTSKKKRKKQLPINGLPREKHLENFDEWQGTAPWDPIVGGDGYPKFLCDVMVEGLAKHLRCVGIDAAVPSSKKPEPSGSNSIFLFLSDELSLSES*