AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0160280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160280 MtrunA17_Chr1g0146721 97.852 512 11 0 1 512 1 512 0.0 1042
Msa0160280 MtrunA17_Chr1g0192551 34.831 178 94 5 26 200 366 524 1.22e-17 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160280 AT5G24340.1 61.840 511 178 5 9 512 5 505 0.0 618
Msa0160280 AT5G24340.2 61.179 492 174 5 9 493 5 486 0.0 582
Msa0160280 AT1G56310.2 34.426 183 98 5 21 200 367 530 1.95e-19 92.0
Msa0160280 AT1G56310.1 34.426 183 98 5 21 200 367 530 1.95e-19 92.0

Find 146 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAATATTTAAGGTCTTTC+AGG 0.172278 1_4:-32335975 Msa0160280:CDS
TTGCTTGCTCGGAATATTTA+AGG 0.172649 1_4:-32335984 Msa0160280:CDS
TGGACTGTCACCAACTTTAT+TGG 0.183295 1_4:-32333445 Msa0160280:CDS
TGGACAGGTTGAACCGTATT+TGG 0.193079 1_4:-32338003 Msa0160280:intron
CCCTCCCTCTCTCTTCAATA+TGG 0.225431 1_4:-32339052 Msa0160280:CDS
AGTGGATTTCGAGAGGTTTC+TGG 0.243426 1_4:+32339264 None:intergenic
TTCTTGTTAAATAAGCAATT+TGG 0.256042 1_4:+32333488 None:intergenic
AAGAAGCAGTTGCCAATTAA+TGG 0.266519 1_4:-32334806 Msa0160280:CDS
GTTGGGGATTTCACTATCTA+AGG 0.266528 1_4:-32337886 Msa0160280:intron
ACTCAGCCATTGTTAGCTTT+TGG 0.273099 1_4:-32332612 Msa0160280:three_prime_UTR
TCTCTGGGAAGCCCATTAAT+TGG 0.275370 1_4:+32334794 None:intergenic
TTGGGTTGAAAGAGCTATTC+AGG 0.279184 1_4:-32335072 Msa0160280:CDS
TTAACAAGAATTTAGAGTTT+TGG 0.282841 1_4:-32333475 Msa0160280:CDS
TTCTTGTTCTGATGTTGTTC+AGG 0.290742 1_4:-32334981 Msa0160280:CDS
CGAACTTCTGTACTGCATTA+TGG 0.303283 1_4:+32333116 None:intergenic
CGCCGAGTTGACACGCGATT+TGG 0.332673 1_4:+32339108 None:intergenic
GAAGAGATGAATGAGGGTTT+TGG 0.342950 1_4:+32339310 None:intergenic
AATTGGGGAAAGATATTAAC+TGG 0.343664 1_4:+32332550 None:intergenic
ACTTCGAATGGATAATCTAT+TGG 0.346561 1_4:+32335102 None:intergenic
TTCAAAGACAACGTATTTAG+TGG 0.347954 1_4:+32332838 None:intergenic
GGACTGTCACCAACTTTATT+GGG 0.348017 1_4:-32333444 Msa0160280:CDS
TCCGTTGAAATTAAATAGTT+AGG 0.353808 1_4:+32332772 None:intergenic
CGACGAGGGAGGTTTGAGTT+AGG 0.362587 1_4:+32339195 None:intergenic
TCCATTCGAAGTGCAAATCT+TGG 0.365006 1_4:-32335091 Msa0160280:CDS
GATCTTCGTTAATATTTAGT+TGG 0.370178 1_4:+32333609 None:intergenic
TCTGTACTGCATTATGGTAC+TGG 0.375544 1_4:+32333122 None:intergenic
AGAAGCAGTTGCCAATTAAT+GGG 0.394347 1_4:-32334805 Msa0160280:CDS
AGACGGTGGGGAATGAGTTT+TGG 0.396979 1_4:+32339138 None:intergenic
AATTCAAACCTTATCGAAAC+CGG 0.401870 1_4:+32338920 None:intergenic
CAAAACATTTACGTTGTGTT+GGG 0.402928 1_4:-32334341 Msa0160280:CDS
ACTATTTGTGGAGAATTGTT+GGG 0.403644 1_4:-32337903 Msa0160280:CDS
AAGAGTTTGTCAACTATTTG+TGG 0.413650 1_4:-32337915 Msa0160280:CDS
GTTAACTATAGGAGAAGAAA+TGG 0.419067 1_4:+32339335 None:intergenic
CACCTTGGGATCCAATAGTT+GGG 0.419800 1_4:-32334733 Msa0160280:CDS
TTTGAGTTAGGGAACGAGTT+AGG 0.421933 1_4:+32339207 None:intergenic
AAGAGAGAGGGAGGGAGATA+AGG 0.425681 1_4:+32339060 None:intergenic
TTGTCAGAAAACATGGTGAT+AGG 0.426512 1_4:-32334880 Msa0160280:CDS
AACTATTTGTGGAGAATTGT+TGG 0.431111 1_4:-32337904 Msa0160280:CDS
CAGGCAACGGTTGCCGAAGA+AGG 0.435285 1_4:-32335956 Msa0160280:intron
ATACTCTATTACCTTGGTTC+AGG 0.437955 1_4:+32334288 None:intergenic
GAAGTGATGTATACCACATC+AGG 0.441192 1_4:-32332751 Msa0160280:three_prime_UTR
CCATAGCTGCATATGTCATC+TGG 0.441623 1_4:+32336014 None:intergenic
GGTTCAGGCTTCTTTGAAGA+AGG 0.443658 1_4:+32334303 None:intergenic
AGGAGCTCCAATGTAGTGAT+TGG 0.446279 1_4:-32336060 Msa0160280:CDS
CCTCCCTCTCTCTTCAATAT+GGG 0.447072 1_4:-32339051 Msa0160280:CDS
ATTTCGAGAGGTTTCTGGTT+CGG 0.449245 1_4:+32339269 None:intergenic
GTCATCTGGTCTTCTGTAAG+AGG 0.455188 1_4:+32336028 None:intergenic
CCATTCGAAGTGCAAATCTT+GGG 0.457879 1_4:-32335090 Msa0160280:CDS
CTGTACTGCATTATGGTACT+GGG 0.458731 1_4:+32333123 None:intergenic
GCACCTTGGGATCCAATAGT+TGG 0.460032 1_4:-32334734 Msa0160280:CDS
AAAGTTCCTCTGTGATGTTA+TGG 0.461542 1_4:-32334696 Msa0160280:intron
CTGCGGAAACCAGCATTTCT+CGG 0.462154 1_4:+32339021 None:intergenic
ATAACATCACAGAGGAACTT+TGG 0.466771 1_4:+32334698 None:intergenic
CCCAAGATTTGCACTTCGAA+TGG 0.470113 1_4:+32335090 None:intergenic
ATGCAATCCCGGTTTCGATA+AGG 0.470492 1_4:-32338928 Msa0160280:intron
TCCGCAGATATCTTGAAGCT+TGG 0.472276 1_4:-32339005 Msa0160280:CDS
GCAAAACATTTACGTTGTGT+TGG 0.472670 1_4:-32334342 Msa0160280:CDS
GTGGCAAGGTACCGCACCTT+GGG 0.474336 1_4:-32334747 Msa0160280:CDS
ACGAGTTAGGTGAGTGAACT+CGG 0.479955 1_4:+32339220 None:intergenic
ATATACTCAGGTTGAAGGCT+TGG 0.480503 1_4:-32334364 Msa0160280:intron
GTTCAGGTGATACCTTCAGC+AGG 0.480716 1_4:-32334965 Msa0160280:CDS
TCGTCTGCGGTTTAATGTAA+TGG 0.487271 1_4:-32332863 Msa0160280:three_prime_UTR
ATTCTACGCTGCAGGAGAGT+TGG 0.488155 1_4:-32335134 Msa0160280:intron
GTTCGGTGGATCCATGTTGA+AGG 0.490687 1_4:+32339286 None:intergenic
GACGAGGGAGGTTTGAGTTA+GGG 0.492859 1_4:+32339196 None:intergenic
AAGGAATATACTCAGGTTGA+AGG 0.492962 1_4:-32334369 Msa0160280:intron
ACCTAACTATTTAATTTCAA+CGG 0.494693 1_4:-32332773 Msa0160280:three_prime_UTR
ATGGATGCTCATTGCTTGCT+CGG 0.498298 1_4:-32335995 Msa0160280:CDS
ACAATACCTCCCAATAAAGT+TGG 0.500595 1_4:+32333435 None:intergenic
ATTGCATCCTTGTTCACAAA+AGG 0.500679 1_4:+32338944 None:intergenic
TGTGAACAAGGATGCAATCC+CGG 0.506138 1_4:-32338939 Msa0160280:CDS
CCAGATGACATATGCAGCTA+TGG 0.508239 1_4:-32336014 Msa0160280:CDS
GGAACCTCTCCGAGAAATGC+TGG 0.508729 1_4:-32339030 Msa0160280:CDS
ATAGCCTCTTCAGTTGAAAG+TGG 0.510202 1_4:+32333539 None:intergenic
TGAATCACTGCCCCTGCTGA+AGG 0.517305 1_4:+32334953 None:intergenic
CGAGTTGACACGCGATTTGG+AGG 0.530138 1_4:+32339111 None:intergenic
TTCAATGGAAATGTATTCAG+TGG 0.535048 1_4:+32333026 None:intergenic
AGTTCGGACGGGTTTCCACT+CGG 0.540037 1_4:+32339163 None:intergenic
GAGGGAGGGAGATAAGGTCG+AGG 0.541400 1_4:+32339066 None:intergenic
ATTTAAGGTCTTTCAGGCAA+CGG 0.542045 1_4:-32335969 Msa0160280:CDS
GAGGCTATTGAAGCTGCAAA+GGG 0.542175 1_4:-32333524 Msa0160280:CDS
TCGAGAGGTTTCTGGTTCGG+TGG 0.543537 1_4:+32339272 None:intergenic
CTATTTGTGGAGAATTGTTG+GGG 0.548719 1_4:-32337902 Msa0160280:CDS
TGAAGGGGAAGAGATGAATG+AGG 0.551284 1_4:+32339303 None:intergenic
TTTAAAGGAATTGTATTCAG+TGG 0.552369 1_4:+32332894 None:intergenic
AGTGGCAAGGTACCGCACCT+TGG 0.553048 1_4:-32334748 Msa0160280:CDS
AGAGGCTATTGAAGCTGCAA+AGG 0.553698 1_4:-32333525 Msa0160280:CDS
GAAGCCACTTTCAACTGAAG+AGG 0.554381 1_4:-32333543 Msa0160280:CDS
GAAGGGGAAGAGATGAATGA+GGG 0.558624 1_4:+32339304 None:intergenic
TGATTCAAAAGTCATCATGT+AGG 0.563710 1_4:-32334937 Msa0160280:CDS
TTAAACAAATTGCATCCATA+CGG 0.563825 1_4:+32332661 None:intergenic
TTGAAAATTGTCAGAAAACA+TGG 0.565414 1_4:-32334887 Msa0160280:CDS
TTCGGTGGATCCATGTTGAA+GGG 0.566857 1_4:+32339287 None:intergenic
GTGAGTGAACTCGGGTGAGT+CGG 0.567429 1_4:+32339229 None:intergenic
GATTCAAAAGTCATCATGTA+GGG 0.569974 1_4:-32334936 Msa0160280:CDS
GATTAATTTAAACTTCGTCA+AGG 0.571624 1_4:-32333070 Msa0160280:exon
TCATCTCTTCCCCTTCAACA+TGG 0.572456 1_4:-32339297 Msa0160280:exon
CCCATATTGAAGAGAGAGGG+AGG 0.572831 1_4:+32339051 None:intergenic
GGAGGGAGATAAGGTCGAGG+AGG 0.575742 1_4:+32339069 None:intergenic
TCAAGATGCACAAAATGCAA+TGG 0.575984 1_4:-32333578 Msa0160280:CDS
ACACTCGTAATATCCAAATA+CGG 0.580297 1_4:+32337990 None:intergenic
ATTTAGAGAACTTTGATGAG+TGG 0.582031 1_4:-32334766 Msa0160280:CDS
ACCTTGGGATCCAATAGTTG+GGG 0.583139 1_4:-32334732 Msa0160280:CDS
ATGTAGGGATACTAAGCCAA+TGG 0.584459 1_4:-32334921 Msa0160280:CDS
ATTCAAACCTTATCGAAACC+GGG 0.584714 1_4:+32338921 None:intergenic
AGTGAACTCGGGTGAGTCGG+TGG 0.585940 1_4:+32339232 None:intergenic
CTCCAAATCGCGTGTCAACT+CGG 0.589593 1_4:-32339110 Msa0160280:CDS
ATTTGGAGGAGTGAGACGGT+GGG 0.590066 1_4:+32339125 None:intergenic
GATTAATTTAAACTTCGTCA+AGG 0.591089 1_4:-32332938 Msa0160280:three_prime_UTR
GAGAACTTTGATGAGTGGCA+AGG 0.591373 1_4:-32334761 Msa0160280:CDS
GATTTGGAGGAGTGAGACGG+TGG 0.592283 1_4:+32339124 None:intergenic
TTCAGGTGATACCTTCAGCA+GGG 0.596087 1_4:-32334964 Msa0160280:CDS
CGAGTTAGGTGAGTGAACTC+GGG 0.599637 1_4:+32339221 None:intergenic
CTGTCACCAACTTTATTGGG+AGG 0.600563 1_4:-32333441 Msa0160280:intron
GTTGTGACCAATCACTACAT+TGG 0.602180 1_4:+32336053 None:intergenic
GTTCCCATATTGAAGAGAGA+GGG 0.604804 1_4:+32339048 None:intergenic
GATGCACAAAATGCAATGGA+AGG 0.607518 1_4:-32333574 Msa0160280:CDS
GGTTCCCATATTGAAGAGAG+AGG 0.608783 1_4:+32339047 None:intergenic
TCGTCGGACTCGACGCCGAG+TGG 0.612313 1_4:-32339178 Msa0160280:CDS
GTGACGAAGTGGATTTCGAG+AGG 0.612730 1_4:+32339257 None:intergenic
CAGCAACAACAGTTGAGAGA+AGG 0.613102 1_4:+32332807 None:intergenic
TCTTCAAGTAATCCCTGATG+TGG 0.613317 1_4:+32332738 None:intergenic
TCTGAATGATAAATGCCGTA+TGG 0.614774 1_4:-32332676 Msa0160280:three_prime_UTR
GAACTCGGGTGAGTCGGTGG+TGG 0.616952 1_4:+32339235 None:intergenic
CCATATTGAAGAGAGAGGGA+GGG 0.618013 1_4:+32339052 None:intergenic
AAGGATGTGCACGTGAGTAA+TGG 0.620225 1_4:-32333051 Msa0160280:three_prime_UTR
AGTCGGTGGTGGTGACGAAG+TGG 0.632308 1_4:+32339246 None:intergenic
CTCGGCGTCGAGTCCGACGA+GGG 0.632562 1_4:+32339181 None:intergenic
AAGGATGTGCACGTGAGTAG+TGG 0.634956 1_4:-32332919 Msa0160280:three_prime_UTR
TTTGGAGGAGTGAGACGGTG+GGG 0.638956 1_4:+32339126 None:intergenic
TCGGTGGATCCATGTTGAAG+GGG 0.645315 1_4:+32339288 None:intergenic
TCAGGTGATACCTTCAGCAG+GGG 0.648948 1_4:-32334963 Msa0160280:CDS
CGCGATTTGGAGGAGTGAGA+CGG 0.650990 1_4:+32339121 None:intergenic
CTAACTCAAACCTCCCTCGT+CGG 0.652710 1_4:-32339194 Msa0160280:CDS
ACTCGGCGTCGAGTCCGACG+AGG 0.653753 1_4:+32339180 None:intergenic
TTGTCACCAAAAGCTAACAA+TGG 0.658647 1_4:+32332606 None:intergenic
AACTATTGGATCCCAAGGTG+CGG 0.659265 1_4:+32334736 None:intergenic
AAAAGCTAACAATGGCTGAG+TGG 0.666874 1_4:+32332614 None:intergenic
GGCGTCGAGTCCGACGAGGG+AGG 0.674089 1_4:+32339184 None:intergenic
GTGTATAAACTAATTGTACA+CGG 0.677799 1_4:+32332961 None:intergenic
AAGTGATGTATACCACATCA+GGG 0.681223 1_4:-32332750 Msa0160280:three_prime_UTR
GAAACCAGCATTTCTCGGAG+AGG 0.684392 1_4:+32339026 None:intergenic
TCCAAGCTTCAAGATATCTG+CGG 0.684999 1_4:+32339004 None:intergenic
CTTCAAAGAAGCCTGAACCA+AGG 0.685428 1_4:-32334299 Msa0160280:intron
CCTTGGGATCCAATAGTTGG+GGG 0.730135 1_4:-32334731 Msa0160280:CDS
TGCTTACCATAACATCACAG+AGG 0.777770 1_4:+32334690 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAAAAAACTAGTTT+TGG - chr1_4:32334430-32334449 Msa0160280:intron 10.0%
!!! ATAATACTTTTCTAAATCAA+AGG + chr1_4:32334467-32334486 None:intergenic 15.0%
!! ACATGAATAAAATAATTGTA+AGG + chr1_4:32335085-32335104 None:intergenic 15.0%
!! AAAAAAACATAAATGTTCTT+TGG + chr1_4:32335329-32335348 None:intergenic 15.0%
!! ATTCTGTAACTAATAATATT+TGG + chr1_4:32335597-32335616 None:intergenic 15.0%
!! TATGTTTATTGAGTTTAAAA+AGG - chr1_4:32335619-32335638 Msa0160280:intron 15.0%
!! AAAACAAAATATAGAATCAT+TGG + chr1_4:32338627-32338646 None:intergenic 15.0%
!! ACTTATAAAACCAATTAGAA+CGG - chr1_4:32333323-32333342 Msa0160280:intron 20.0%
!! AATATAATATATGCAAAGTC+CGG - chr1_4:32333384-32333403 Msa0160280:intron 20.0%
!!! TCTAATTGGCTTTTTTTTTT+TGG + chr1_4:32333427-32333446 None:intergenic 20.0%
!! AAACATACTGATAGTTATAT+TGG + chr1_4:32333579-32333598 None:intergenic 20.0%
!! CTAGTTTCTATCTTAAAAAA+AGG + chr1_4:32334506-32334525 None:intergenic 20.0%
!! AAGAATATTAAAGCTTTACA+TGG + chr1_4:32335021-32335040 None:intergenic 20.0%
!! TTTAATATTCTTCAAAGCAT+AGG - chr1_4:32335029-32335048 Msa0160280:CDS 20.0%
!! TGAGTTTAAAAAGGAATAAT+AGG - chr1_4:32335628-32335647 Msa0160280:intron 20.0%
!! ATGTATATAATAGGACATAA+GGG - chr1_4:32335714-32335733 Msa0160280:intron 20.0%
!! AACTGAATTATATTTGCTTT+AGG - chr1_4:32335832-32335851 Msa0160280:intron 20.0%
!!! TATATGGCTTATTTTATAAC+TGG - chr1_4:32336237-32336256 Msa0160280:intron 20.0%
!!! TTTTTTGTCTTTTCTTGATA+TGG + chr1_4:32336301-32336320 None:intergenic 20.0%
!! TTTAAAAAATGCAAACTGAA+AGG + chr1_4:32336440-32336459 None:intergenic 20.0%
!!! TCGTTTGTTAAAATAAATAG+TGG - chr1_4:32336463-32336482 Msa0160280:intron 20.0%
!! ATATTTATTGAAATGCGTTA+TGG - chr1_4:32337442-32337461 Msa0160280:intron 20.0%
!! TAAGTTCATTATTATTTGTG+TGG - chr1_4:32337686-32337705 Msa0160280:intron 20.0%
!!! TAGAAAGATTACATATTTTG+AGG - chr1_4:32337910-32337929 Msa0160280:CDS 20.0%
!! TAGTATAACATTATCTTTCA+AGG - chr1_4:32337977-32337996 Msa0160280:CDS 20.0%
!!! GTATAGAATGTTAATTTTCA+TGG - chr1_4:32338016-32338035 Msa0160280:intron 20.0%
!!! ATTTGACTTAAAAAATCCAT+GGG + chr1_4:32338087-32338106 None:intergenic 20.0%
!!! AATTTGACTTAAAAAATCCA+TGG + chr1_4:32338088-32338107 None:intergenic 20.0%
!! AGTCAAATTAATATTTAACC+TGG - chr1_4:32338099-32338118 Msa0160280:intron 20.0%
!!! TACTTAGATTTCAAGTATAA+AGG - chr1_4:32338156-32338175 Msa0160280:intron 20.0%
!!! ATAAGCAATTTGGTATTTTT+TGG + chr1_4:32338417-32338436 None:intergenic 20.0%
!! TTCTTGTTAAATAAGCAATT+TGG + chr1_4:32338427-32338446 None:intergenic 20.0%
!!! TTAACAAGAATTTAGAGTTT+TGG - chr1_4:32338437-32338456 Msa0160280:intron 20.0%
!! GTTATGTAAGATAAATGATA+AGG + chr1_4:32338542-32338561 None:intergenic 20.0%
!! AAATAACTTCAAAACATATG+AGG + chr1_4:32338664-32338683 None:intergenic 20.0%
!!! ACCTAACTATTTAATTTCAA+CGG - chr1_4:32339139-32339158 Msa0160280:CDS 20.0%
! GTTGTAATAATTAGTTACAC+CGG - chr1_4:32333168-32333187 Msa0160280:intron 25.0%
! ATTCTAACTTCTTAACTAAC+CGG + chr1_4:32333190-32333209 None:intergenic 25.0%
! ATATAATATATGCAAAGTCC+GGG - chr1_4:32333385-32333404 Msa0160280:intron 25.0%
!!! AATTGGCTTTTTTTTTTTGG+TGG + chr1_4:32333424-32333443 None:intergenic 25.0%
!! TAAGTACTCATTTAGAATCA+CGG - chr1_4:32333452-32333471 Msa0160280:CDS 25.0%
! CAGGAATTTAATATATGTGA+TGG - chr1_4:32333603-32333622 Msa0160280:CDS 25.0%
! CATCTTCAGTTTAAGAAAAA+TGG - chr1_4:32333952-32333971 Msa0160280:intron 25.0%
! TTCAGTTTAAGAAAAATGGA+AGG - chr1_4:32333956-32333975 Msa0160280:intron 25.0%
!!! AGCCATTCAATTCAATTTTT+TGG - chr1_4:32334068-32334087 Msa0160280:CDS 25.0%
!!! GCCATTCAATTCAATTTTTT+GGG - chr1_4:32334069-32334088 Msa0160280:CDS 25.0%
! ACCCAAAAAATTGAATTGAA+TGG + chr1_4:32334073-32334092 None:intergenic 25.0%
!!! CACAATTAGAAGTTAGTTTT+CGG - chr1_4:32334209-32334228 Msa0160280:intron 25.0%
! AGGAACACTAGAAAATATAT+CGG + chr1_4:32334380-32334399 None:intergenic 25.0%
! AATAATACTGTAGGATACAA+AGG + chr1_4:32334400-32334419 None:intergenic 25.0%
! TTTGTCGAAAATAATACTGT+AGG + chr1_4:32334409-32334428 None:intergenic 25.0%
! CTATCTTAAAAAAAGGAGTT+CGG + chr1_4:32334499-32334518 None:intergenic 25.0%
! AAATTTCATTCCTAAGTAGA+TGG - chr1_4:32335253-32335272 Msa0160280:intron 25.0%
! AAGACAACTTACAAAAGATT+AGG + chr1_4:32335417-32335436 None:intergenic 25.0%
! CAGTTTATGTTAATAGAAAC+AGG - chr1_4:32335691-32335710 Msa0160280:intron 25.0%
! AGAAACAGGATGTATATAAT+AGG - chr1_4:32335705-32335724 Msa0160280:intron 25.0%
! GATGTATATAATAGGACATA+AGG - chr1_4:32335713-32335732 Msa0160280:intron 25.0%
! TGTATATAATAGGACATAAG+GGG - chr1_4:32335715-32335734 Msa0160280:intron 25.0%
!! TAGCATTTTCAGTTACTATA+AGG - chr1_4:32335805-32335824 Msa0160280:intron 25.0%
! GCGAATTAATTTAAACTAGA+GGG + chr1_4:32336097-32336116 None:intergenic 25.0%
!!! CAGCATTCTATTTTTCAAAT+TGG - chr1_4:32336147-32336166 Msa0160280:intron 25.0%
!! AATTTCTTCTGAAGAGTTTA+TGG + chr1_4:32336199-32336218 None:intergenic 25.0%
! TATTCTATATCCATTCACTA+AGG - chr1_4:32336717-32336736 Msa0160280:intron 25.0%
! TACACAGAATTTCTTGTAAT+TGG - chr1_4:32336745-32336764 Msa0160280:intron 25.0%
! TTCAACAAAAATTCATCCAT+TGG + chr1_4:32337010-32337029 None:intergenic 25.0%
! TTGAAAATTGTCAGAAAACA+TGG - chr1_4:32337025-32337044 Msa0160280:intron 25.0%
!! TTCTCTAAATGTTTTTCTCT+GGG + chr1_4:32337136-32337155 None:intergenic 25.0%
! GTTCATAAAAATTGAAGAGA+GGG + chr1_4:32337275-32337294 None:intergenic 25.0%
! TGGAGCATATAATATATGAT+CGG - chr1_4:32337372-32337391 Msa0160280:intron 25.0%
! ATAAAATGTGAGTATGAATC+TGG - chr1_4:32337519-32337538 Msa0160280:intron 25.0%
! TCAATTTCTCAAGCAATATA+TGG + chr1_4:32338233-32338252 None:intergenic 25.0%
! GATCTTCGTTAATATTTAGT+TGG + chr1_4:32338306-32338325 None:intergenic 25.0%
! TAAGATAAATGATAAGGCAA+TGG + chr1_4:32338536-32338555 None:intergenic 25.0%
! AAAACATATGAGGTGAAAAA+GGG + chr1_4:32338654-32338673 None:intergenic 25.0%
!!! ATTTATTTTGACTACGAAAG+AGG - chr1_4:32338680-32338699 Msa0160280:intron 25.0%
!!! TTTATTTTGACTACGAAAGA+GGG - chr1_4:32338681-32338700 Msa0160280:intron 25.0%
! CCTACTCTGATTTATTATTA+CGG - chr1_4:32338716-32338735 Msa0160280:intron 25.0%
! GATTAATTTAAACTTCGTCA+AGG - chr1_4:32338842-32338861 Msa0160280:intron 25.0%
! GTGTATAAACTAATTGTACA+CGG + chr1_4:32338954-32338973 None:intergenic 25.0%
! GATTAATTTAAACTTCGTCA+AGG - chr1_4:32338842-32338861 Msa0160280:intron 25.0%
! TTTAAAGGAATTGTATTCAG+TGG + chr1_4:32339021-32339040 None:intergenic 25.0%
!! CAGACGATATTTTTCTTTAA+AGG + chr1_4:32339036-32339055 None:intergenic 25.0%
! TTAAAGAAAAATATCGTCTG+CGG - chr1_4:32339036-32339055 Msa0160280:CDS 25.0%
! TCCGTTGAAATTAAATAGTT+AGG + chr1_4:32339143-32339162 None:intergenic 25.0%
! TTAAACAAATTGCATCCATA+CGG + chr1_4:32339254-32339273 None:intergenic 25.0%
GTTAACTATAGGAGAAGAAA+TGG + chr1_4:32332580-32332599 None:intergenic 30.0%
AATTCAAACCTTATCGAAAC+CGG + chr1_4:32332995-32333014 None:intergenic 30.0%
ACTCATCGAGAATTGTAATA+TGG + chr1_4:32333097-32333116 None:intergenic 30.0%
TACCATACTACAATTCTTGA+TGG - chr1_4:32333220-32333239 Msa0160280:intron 30.0%
TTCCATCAAGAATTGTAGTA+TGG + chr1_4:32333225-32333244 None:intergenic 30.0%
TATAATATATGCAAAGTCCG+GGG - chr1_4:32333386-32333405 Msa0160280:intron 30.0%
GAGTACTTAGTTGTTCTAAT+TGG + chr1_4:32333441-32333460 None:intergenic 30.0%
AAAATGTAGAAGCTCCAATT+TGG + chr1_4:32333513-32333532 None:intergenic 30.0%
ACTGATAGTTATATTGGCAA+TGG + chr1_4:32333573-32333592 None:intergenic 30.0%
ACTATCAGTATGTTTAATGC+AGG - chr1_4:32333584-32333603 Msa0160280:CDS 30.0%
TGTAATATGATATCAGAGTC+AGG + chr1_4:32333650-32333669 None:intergenic 30.0%
ACACTCGTAATATCCAAATA+CGG + chr1_4:32333925-32333944 None:intergenic 30.0%
AAGAGTTTGTCAACTATTTG+TGG - chr1_4:32333997-32334016 Msa0160280:intron 30.0%
AACTATTTGTGGAGAATTGT+TGG - chr1_4:32334008-32334027 Msa0160280:intron 30.0%
ACTATTTGTGGAGAATTGTT+GGG - chr1_4:32334009-32334028 Msa0160280:intron 30.0%
TTGCTGTATTAAATGTAGTC+AGG - chr1_4:32334337-32334356 Msa0160280:CDS 30.0%
!!! AAAACTAGTTTTGGAAGCTA+AGG - chr1_4:32334439-32334458 Msa0160280:intron 30.0%
!!! AAACTAGTTTTGGAAGCTAA+GGG - chr1_4:32334440-32334459 Msa0160280:intron 30.0%
GTCATAAACGTAGATATGTT+TGG - chr1_4:32334527-32334546 Msa0160280:intron 30.0%
!!! GAAAACAAGATGTTAGCTTT+TGG + chr1_4:32334586-32334605 None:intergenic 30.0%
! ATTTGTTAGCTTAAACTTCC+AGG + chr1_4:32334689-32334708 None:intergenic 30.0%
CCTATATAATAGAGTCTATG+TGG + chr1_4:32334870-32334889 None:intergenic 30.0%
CCACATAGACTCTATTATAT+AGG - chr1_4:32334867-32334886 Msa0160280:CDS 30.0%
! CTGGCGATATTTATGTATTT+TGG + chr1_4:32334955-32334974 None:intergenic 30.0%
CAAAATACATAAATATCGCC+AGG - chr1_4:32334953-32334972 Msa0160280:CDS 30.0%
ATGTCAGACATCAATATACA+CGG - chr1_4:32335101-32335120 Msa0160280:CDS 30.0%
! ATATACACGGTGTCAAAATT+AGG - chr1_4:32335114-32335133 Msa0160280:CDS 30.0%
!! ATTAGGTGCTTTATTTCTGT+AGG - chr1_4:32335131-32335150 Msa0160280:intron 30.0%
TTAGGAATGAAATTTGCACA+AGG + chr1_4:32335248-32335267 None:intergenic 30.0%
TTTGTTGAATCCATCTACTT+AGG + chr1_4:32335266-32335285 None:intergenic 30.0%
ACATGCTTTCTCAAATTTGT+TGG - chr1_4:32335509-32335528 Msa0160280:intron 30.0%
CTTTCAGTAAAAACCTTCTT+CGG + chr1_4:32335972-32335991 None:intergenic 30.0%
AAAGTTTCATACCAATCTCT+GGG - chr1_4:32335988-32336007 Msa0160280:CDS 30.0%
CGCGAATTAATTTAAACTAG+AGG + chr1_4:32336098-32336117 None:intergenic 30.0%
! CAGAAGAAATTATGATGATG+CGG - chr1_4:32336208-32336227 Msa0160280:intron 30.0%
AAAATTATTTGTGCCATCCT+TGG - chr1_4:32336319-32336338 Msa0160280:intron 30.0%
GCAAAGTGAAACTATTAATC+AGG + chr1_4:32336365-32336384 None:intergenic 30.0%
GATGTGAAAGTAAGATCATA+TGG + chr1_4:32336686-32336705 None:intergenic 30.0%
TTTATTAAATTCTACGCTGC+AGG - chr1_4:32336770-32336789 Msa0160280:intron 30.0%
ACTTCGAATGGATAATCTAT+TGG + chr1_4:32336813-32336832 None:intergenic 30.0%
TGATTCAAAAGTCATCATGT+AGG - chr1_4:32336975-32336994 Msa0160280:intron 30.0%
GATTCAAAAGTCATCATGTA+GGG - chr1_4:32336976-32336995 Msa0160280:intron 30.0%
! GTTCTCTAAATGTTTTTCTC+TGG + chr1_4:32337137-32337156 None:intergenic 30.0%
ATTTAGAGAACTTTGATGAG+TGG - chr1_4:32337146-32337165 Msa0160280:intron 30.0%
CGTTCATAAAAATTGAAGAG+AGG + chr1_4:32337276-32337295 None:intergenic 30.0%
TATACCCTTTCGTTAATCTT+TGG - chr1_4:32337301-32337320 Msa0160280:intron 30.0%
TAGTTAAATTCCAATCACTC+TGG - chr1_4:32337352-32337371 Msa0160280:intron 30.0%
ATTGAAATGCGTTATGGAAA+AGG - chr1_4:32337448-32337467 Msa0160280:intron 30.0%
CAAAACATTTACGTTGTGTT+GGG - chr1_4:32337571-32337590 Msa0160280:intron 30.0%
AAAAAATGAACAGCTACTTG+AGG - chr1_4:32337864-32337883 Msa0160280:intron 30.0%
!!! ACTTGAGGTATTGTTGTTTT+AGG - chr1_4:32337879-32337898 Msa0160280:intron 30.0%
TATCTTTCAAGGAACTCTTA+TGG - chr1_4:32337988-32338007 Msa0160280:CDS 30.0%
!!! CAATTTTAGCTGTGTCATTA+TGG + chr1_4:32338258-32338277 None:intergenic 30.0%
GTTGGAAAGTTTCAATAATC+TGG + chr1_4:32338288-32338307 None:intergenic 30.0%
!! TTTAGAGTTTTGGCAATGTA+TGG - chr1_4:32338447-32338466 Msa0160280:intron 30.0%
!! ATAGAATCATTGGTTTCAGT+TGG + chr1_4:32338617-32338636 None:intergenic 30.0%
AAACATATGAGGTGAAAAAG+GGG + chr1_4:32338653-32338672 None:intergenic 30.0%
CAAAACATATGAGGTGAAAA+AGG + chr1_4:32338655-32338674 None:intergenic 30.0%
!!! TTATTTTGACTACGAAAGAG+GGG - chr1_4:32338682-32338701 Msa0160280:intron 30.0%
CCGTAATAATAAATCAGAGT+AGG + chr1_4:32338719-32338738 None:intergenic 30.0%
TTCAATGGAAATGTATTCAG+TGG + chr1_4:32338889-32338908 None:intergenic 30.0%
! AGACTGACATTTTTCTTCAA+TGG + chr1_4:32338904-32338923 None:intergenic 30.0%
TTCAAAGACAACGTATTTAG+TGG + chr1_4:32339077-32339096 None:intergenic 30.0%
!!! GGGTTTTGGTTGTTAACTAT+AGG + chr1_4:32332591-32332610 None:intergenic 35.0%
! TCTTCTACCTTTTGTGAACA+AGG - chr1_4:32332961-32332980 Msa0160280:three_prime_UTR 35.0%
ATTGCATCCTTGTTCACAAA+AGG + chr1_4:32332971-32332990 None:intergenic 35.0%
ATTCAAACCTTATCGAAACC+GGG + chr1_4:32332994-32333013 None:intergenic 35.0%
TGTTCTATTGTCGTATCTCT+TGG + chr1_4:32333301-32333320 None:intergenic 35.0%
ATTTGGCTAATGCTCCAAAT+TGG - chr1_4:32333496-32333515 Msa0160280:CDS 35.0%
!!! TTTTCACGTTTTTCAAGCCT+TGG - chr1_4:32333529-32333548 Msa0160280:CDS 35.0%
!!! TTTCACGTTTTTCAAGCCTT+GGG - chr1_4:32333530-32333549 Msa0160280:CDS 35.0%
! GACTGGTTAGTTGTTCTAAT+TGG + chr1_4:32333779-32333798 None:intergenic 35.0%
ACTAGTCAGTTCATTTAGAC+TGG + chr1_4:32333796-32333815 None:intergenic 35.0%
CTATTTGTGGAGAATTGTTG+GGG - chr1_4:32334010-32334029 Msa0160280:intron 35.0%
TGTGTTCAGAAAACAAGTAG+TGG - chr1_4:32334100-32334119 Msa0160280:CDS 35.0%
! CAAATATCACAGCATTGAGT+AGG - chr1_4:32334148-32334167 Msa0160280:CDS 35.0%
!!! AAGTTAGTTTTCGGTGTTTG+TGG - chr1_4:32334218-32334237 Msa0160280:intron 35.0%
! GAGTTTTCACTTAGCATATG+AGG - chr1_4:32334289-32334308 Msa0160280:intron 35.0%
TTGTATAAAACACATCGTCC+TGG - chr1_4:32334668-32334687 Msa0160280:intron 35.0%
! ATGGCCTTAAACTTGTATCA+TGG - chr1_4:32334728-32334747 Msa0160280:CDS 35.0%
GAAGCCATGATACAAGTTTA+AGG + chr1_4:32334735-32334754 None:intergenic 35.0%
CTTAATACATGAACAGTGAG+CGG - chr1_4:32334775-32334794 Msa0160280:CDS 35.0%
TTAATACATGAACAGTGAGC+GGG - chr1_4:32334776-32334795 Msa0160280:CDS 35.0%
TCTCTAGTTATCTCTCATTC+AGG + chr1_4:32334807-32334826 None:intergenic 35.0%
AGATAACTAGAGACATGTGA+TGG - chr1_4:32334814-32334833 Msa0160280:CDS 35.0%
GTGTAGTTCAAAGTTCAAAC+CGG + chr1_4:32334848-32334867 None:intergenic 35.0%
TTGGCAGCATTAATGTTCTT+TGG + chr1_4:32335365-32335384 None:intergenic 35.0%
ACATTAATGCTGCCAACATA+AGG - chr1_4:32335369-32335388 Msa0160280:intron 35.0%
GTTTAAACCAGTCCTTATGT+TGG + chr1_4:32335384-32335403 None:intergenic 35.0%
! TTTTGCTCCATTGGAATTTC+AGG - chr1_4:32335763-32335782 Msa0160280:intron 35.0%
! TTTGGAACCTGAAATTCCAA+TGG + chr1_4:32335773-32335792 None:intergenic 35.0%
!! ATTTCAGGTTCCAAAGACTT+TGG - chr1_4:32335778-32335797 Msa0160280:intron 35.0%
TTGCTTGCTCGGAATATTTA+AGG - chr1_4:32335928-32335947 Msa0160280:intron 35.0%
! CGGAATATTTAAGGTCTTTC+AGG - chr1_4:32335937-32335956 Msa0160280:intron 35.0%
! ATTTAAGGTCTTTCAGGCAA+CGG - chr1_4:32335943-32335962 Msa0160280:intron 35.0%
GAAAGTTTCATACCAATCTC+TGG - chr1_4:32335987-32336006 Msa0160280:CDS 35.0%
TTGGATCGATTAAGTTTGAC+TGG - chr1_4:32336166-32336185 Msa0160280:intron 35.0%
GATGATGCGGAAAAGATATA+TGG - chr1_4:32336221-32336240 Msa0160280:intron 35.0%
TTCTTGATATGGAACTCAAG+TGG + chr1_4:32336290-32336309 None:intergenic 35.0%
CAAATGGAAAATTCCAAGGA+TGG + chr1_4:32336335-32336354 None:intergenic 35.0%
GACACAAATGGAAAATTCCA+AGG + chr1_4:32336339-32336358 None:intergenic 35.0%
TTAATCAGGCAAGACACAAA+TGG + chr1_4:32336351-32336370 None:intergenic 35.0%
TTGACCAAGTAGCAGATTAT+TGG - chr1_4:32336393-32336412 Msa0160280:intron 35.0%
TGACCAAGTAGCAGATTATT+GGG - chr1_4:32336394-32336413 Msa0160280:intron 35.0%
TGCATCACTTGTAAAGACAA+TGG - chr1_4:32336557-32336576 Msa0160280:intron 35.0%
GTGTATACATCCTTAGTGAA+TGG + chr1_4:32336730-32336749 None:intergenic 35.0%
! CACACAATTTTGTGAAGCTT+TGG - chr1_4:32336892-32336911 Msa0160280:intron 35.0%
TTCTTGTTCTGATGTTGTTC+AGG - chr1_4:32336931-32336950 Msa0160280:intron 35.0%
TTGTCAGAAAACATGGTGAT+AGG - chr1_4:32337032-32337051 Msa0160280:intron 35.0%
! TGGTGATAGGATTTTGCTAA+AGG - chr1_4:32337045-32337064 Msa0160280:intron 35.0%
!!! CGTTTCTTTTTTGAGGTCTT+GGG + chr1_4:32337085-32337104 None:intergenic 35.0%
CCAAGACCTCAAAAAAGAAA+CGG - chr1_4:32337083-32337102 Msa0160280:intron 35.0%
!!! CTTCTTCCGTTTCTTTTTTG+AGG + chr1_4:32337092-32337111 None:intergenic 35.0%
AAGAAGCAGTTGCCAATTAA+TGG - chr1_4:32337106-32337125 Msa0160280:intron 35.0%
AGAAGCAGTTGCCAATTAAT+GGG - chr1_4:32337107-32337126 Msa0160280:intron 35.0%
ATAACATCACAGAGGAACTT+TGG + chr1_4:32337217-32337236 None:intergenic 35.0%
AAAGTTCCTCTGTGATGTTA+TGG - chr1_4:32337216-32337235 Msa0160280:intron 35.0%
ACCTCCAAAGATTAACGAAA+GGG + chr1_4:32337308-32337327 None:intergenic 35.0%
AACCTCCAAAGATTAACGAA+AGG + chr1_4:32337309-32337328 None:intergenic 35.0%
! ATCTTTGGAGGTTAAGCAAT+AGG - chr1_4:32337316-32337335 Msa0160280:intron 35.0%
ATTATATGCTCCAGAGTGAT+TGG + chr1_4:32337365-32337384 None:intergenic 35.0%
AATGCGTTATGGAAAAGGAA+AGG - chr1_4:32337453-32337472 Msa0160280:intron 35.0%
ATGTGAGTATGAATCTGGTA+AGG - chr1_4:32337524-32337543 Msa0160280:intron 35.0%
ATCTGGTAAGGAATATACTC+AGG - chr1_4:32337536-32337555 Msa0160280:intron 35.0%
!! AAGGAATATACTCAGGTTGA+AGG - chr1_4:32337543-32337562 Msa0160280:intron 35.0%
GCAAAACATTTACGTTGTGT+TGG - chr1_4:32337570-32337589 Msa0160280:intron 35.0%
ATACTCTATTACCTTGGTTC+AGG + chr1_4:32337627-32337646 None:intergenic 35.0%
! AGAAGCATACTCTATTACCT+TGG + chr1_4:32337633-32337652 None:intergenic 35.0%
CATTATTATTTGTGTGGCAG+CGG - chr1_4:32337692-32337711 Msa0160280:intron 35.0%
! TTCTATTTTCCTCTTCCTGT+CGG - chr1_4:32337721-32337740 Msa0160280:intron 35.0%
ACAATGATAATTCATCCGAC+AGG + chr1_4:32337739-32337758 None:intergenic 35.0%
!!! AGAAAAGAGTGCTTTTGACA+CGG - chr1_4:32337788-32337807 Msa0160280:intron 35.0%
ACCATGCAAAAAATGAGCTA+GGG + chr1_4:32338192-32338211 None:intergenic 35.0%
TCAAGATGCACAAAATGCAA+TGG - chr1_4:32338334-32338353 Msa0160280:intron 35.0%
ACAATACCTCCCAATAAAGT+TGG + chr1_4:32338480-32338499 None:intergenic 35.0%
AGTTGGATTAAGTAAGCGTT+TGG + chr1_4:32338600-32338619 None:intergenic 35.0%
AACATATGAGGTGAAAAAGG+GGG + chr1_4:32338652-32338671 None:intergenic 35.0%
TATTGTGCCTGTCATATTCA+GGG - chr1_4:32338764-32338783 Msa0160280:intron 35.0%
TGAAGAAAAATGTCAGTCTG+TGG - chr1_4:32338905-32338924 Msa0160280:intron 35.0%
AAGTGATGTATACCACATCA+GGG - chr1_4:32339162-32339181 Msa0160280:CDS 35.0%
TCTGAATGATAAATGCCGTA+TGG - chr1_4:32339236-32339255 Msa0160280:CDS 35.0%
TTGTCACCAAAAGCTAACAA+TGG + chr1_4:32339309-32339328 None:intergenic 35.0%
! GAAGAGATGAATGAGGGTTT+TGG + chr1_4:32332605-32332624 None:intergenic 40.0%
!! ATTTCGAGAGGTTTCTGGTT+CGG + chr1_4:32332646-32332665 None:intergenic 40.0%
! TTTGAGTTAGGGAACGAGTT+AGG + chr1_4:32332708-32332727 None:intergenic 40.0%
!! GGAATGAGTTTTGGTGAGTT+CGG + chr1_4:32332768-32332787 None:intergenic 40.0%
GTTCCCATATTGAAGAGAGA+GGG + chr1_4:32332867-32332886 None:intergenic 40.0%
TCCAAGCTTCAAGATATCTG+CGG + chr1_4:32332911-32332930 None:intergenic 40.0%
!!! CTTTTTTTTTTTGGTGGCCG+GGG + chr1_4:32333418-32333437 None:intergenic 40.0%
!!! GCTTTTTTTTTTTGGTGGCC+GGG + chr1_4:32333419-32333438 None:intergenic 40.0%
!!! GGCTTTTTTTTTTTGGTGGC+CGG + chr1_4:32333420-32333439 None:intergenic 40.0%
! GTACTCATTTAGAATCACGG+TGG - chr1_4:32333455-32333474 Msa0160280:CDS 40.0%
TAGCCAAATGCACAATAGGT+GGG + chr1_4:32333485-32333504 None:intergenic 40.0%
TTAGCCAAATGCACAATAGG+TGG + chr1_4:32333486-32333505 None:intergenic 40.0%
GCATTAGCCAAATGCACAAT+AGG + chr1_4:32333489-32333508 None:intergenic 40.0%
GTTGTGATGATTCGTGTTTG+TGG - chr1_4:32333879-32333898 Msa0160280:intron 40.0%
TTCGTGTTTGTGGTGAATTG+TGG - chr1_4:32333889-32333908 Msa0160280:intron 40.0%
GTTGGGGATTTCACTATCTA+AGG - chr1_4:32334026-32334045 Msa0160280:intron 40.0%
AGAGAATGAGTGCACATGAA+TGG - chr1_4:32334709-32334728 Msa0160280:CDS 40.0%
TTCTCTCACAAGAGTCAGTT+AGG - chr1_4:32334752-32334771 Msa0160280:CDS 40.0%
TCAAAGCATAGGTTGCAAGT+TGG - chr1_4:32335040-32335059 Msa0160280:CDS 40.0%
GAATGTGTTCTGCATCAAGA+AGG - chr1_4:32335172-32335191 Msa0160280:intron 40.0%
! AAGCATGTGTTTTGCTCCAT+TGG - chr1_4:32335754-32335773 Msa0160280:intron 40.0%
ATGCTAGTTGCCAAAGTCTT+TGG + chr1_4:32335791-32335810 None:intergenic 40.0%
GTTGTGACCAATCACTACAT+TGG + chr1_4:32335862-32335881 None:intergenic 40.0%
! TCTATAGTTTGCCCAGAGAT+TGG + chr1_4:32336002-32336021 None:intergenic 40.0%
ACGAAATACAACACAACCAG+AGG + chr1_4:32336025-32336044 None:intergenic 40.0%
! TGAGACTTTGCTGCATTGAT+TGG - chr1_4:32336058-32336077 Msa0160280:CDS 40.0%
CTTCCCAATAATCTGCTACT+TGG + chr1_4:32336400-32336419 None:intergenic 40.0%
TCCATTCGAAGTGCAAATCT+TGG - chr1_4:32336821-32336840 Msa0160280:intron 40.0%
CCATTCGAAGTGCAAATCTT+GGG - chr1_4:32336822-32336841 Msa0160280:intron 40.0%
!! TTGGGTTGAAAGAGCTATTC+AGG - chr1_4:32336840-32336859 Msa0160280:intron 40.0%
ATGTAGGGATACTAAGCCAA+TGG - chr1_4:32336991-32337010 Msa0160280:intron 40.0%
!!! CCGTTTCTTTTTTGAGGTCT+TGG + chr1_4:32337086-32337105 None:intergenic 40.0%
TGCTTACCATAACATCACAG+AGG + chr1_4:32337225-32337244 None:intergenic 40.0%
ACCCTTTCGTTAATCTTTGG+AGG - chr1_4:32337304-32337323 Msa0160280:intron 40.0%
!! ATATACTCAGGTTGAAGGCT+TGG - chr1_4:32337548-32337567 Msa0160280:intron 40.0%
ATAATTCATCCGACAGGAAG+AGG + chr1_4:32337733-32337752 None:intergenic 40.0%
!!! GAAAAGAGTGCTTTTGACAC+GGG - chr1_4:32337789-32337808 Msa0160280:intron 40.0%
TCAAGGAACTCTTATGGAGT+AGG - chr1_4:32337994-32338013 Msa0160280:CDS 40.0%
ACAGCAAAGACAAACTTTCC+AGG + chr1_4:32338120-32338139 None:intergenic 40.0%
ATGCAAAAAATGAGCTAGGG+AGG + chr1_4:32338189-32338208 None:intergenic 40.0%
!!! TCCCTAGCTCATTTTTTGCA+TGG - chr1_4:32338188-32338207 Msa0160280:intron 40.0%
CACCATGCAAAAAATGAGCT+AGG + chr1_4:32338193-32338212 None:intergenic 40.0%
!!! CTAGCTCATTTTTTGCATGG+TGG - chr1_4:32338191-32338210 Msa0160280:intron 40.0%
GATGCACAAAATGCAATGGA+AGG - chr1_4:32338338-32338357 Msa0160280:intron 40.0%
ATAGCCTCTTCAGTTGAAAG+TGG + chr1_4:32338376-32338395 None:intergenic 40.0%
TGGACTGTCACCAACTTTAT+TGG - chr1_4:32338467-32338486 Msa0160280:intron 40.0%
GGACTGTCACCAACTTTATT+GGG - chr1_4:32338468-32338487 Msa0160280:intron 40.0%
ACATATGAGGTGAAAAAGGG+GGG + chr1_4:32338651-32338670 None:intergenic 40.0%
GTATTGTGCCTGTCATATTC+AGG - chr1_4:32338763-32338782 Msa0160280:intron 40.0%
CTGTACTGCATTATGGTACT+GGG + chr1_4:32338792-32338811 None:intergenic 40.0%
TCTGTACTGCATTATGGTAC+TGG + chr1_4:32338793-32338812 None:intergenic 40.0%
CGAACTTCTGTACTGCATTA+TGG + chr1_4:32338799-32338818 None:intergenic 40.0%
TCGTCTGCGGTTTAATGTAA+TGG - chr1_4:32339049-32339068 Msa0160280:CDS 40.0%
GAAGTGATGTATACCACATC+AGG - chr1_4:32339161-32339180 Msa0160280:CDS 40.0%
TCTTCAAGTAATCCCTGATG+TGG + chr1_4:32339177-32339196 None:intergenic 40.0%
AAAAGCTAACAATGGCTGAG+TGG + chr1_4:32339301-32339320 None:intergenic 40.0%
!!! ACTCAGCCATTGTTAGCTTT+TGG - chr1_4:32339300-32339319 Msa0160280:exon 40.0%
GAAGGGGAAGAGATGAATGA+GGG + chr1_4:32332611-32332630 None:intergenic 45.0%
TGAAGGGGAAGAGATGAATG+AGG + chr1_4:32332612-32332631 None:intergenic 45.0%
TCATCTCTTCCCCTTCAACA+TGG - chr1_4:32332615-32332634 Msa0160280:three_prime_UTR 45.0%
TTCGGTGGATCCATGTTGAA+GGG + chr1_4:32332628-32332647 None:intergenic 45.0%
! AGTGGATTTCGAGAGGTTTC+TGG + chr1_4:32332651-32332670 None:intergenic 45.0%
ACGAGTTAGGTGAGTGAACT+CGG + chr1_4:32332695-32332714 None:intergenic 45.0%
!! TGAGTTTTGGTGAGTTCGGA+CGG + chr1_4:32332764-32332783 None:intergenic 45.0%
CCATATTGAAGAGAGAGGGA+GGG + chr1_4:32332863-32332882 None:intergenic 45.0%
CCTCCCTCTCTCTTCAATAT+GGG - chr1_4:32332861-32332880 Msa0160280:three_prime_UTR 45.0%
GGTTCCCATATTGAAGAGAG+AGG + chr1_4:32332868-32332887 None:intergenic 45.0%
TCCGCAGATATCTTGAAGCT+TGG - chr1_4:32332907-32332926 Msa0160280:three_prime_UTR 45.0%
TGTGAACAAGGATGCAATCC+CGG - chr1_4:32332973-32332992 Msa0160280:three_prime_UTR 45.0%
ATGCAATCCCGGTTTCGATA+AGG - chr1_4:32332984-32333003 Msa0160280:three_prime_UTR 45.0%
CTCATGAGGACCGTTCTAAT+TGG + chr1_4:32333336-32333355 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr1_4:32333352-32333371 Msa0160280:intron 45.0%
TACCCCACCTATTGTGCATT+TGG - chr1_4:32333479-32333498 Msa0160280:CDS 45.0%
AGCCAAATGCACAATAGGTG+GGG + chr1_4:32333484-32333503 None:intergenic 45.0%
CTCAACTATGAGTTCGATCG+AGG + chr1_4:32333675-32333694 None:intergenic 45.0%
GTTTGTGGTGAATTGTGGAC+AGG - chr1_4:32333894-32333913 Msa0160280:intron 45.0%
! TGGACAGGTTGAACCGTATT+TGG - chr1_4:32333909-32333928 Msa0160280:intron 45.0%
! ACATGTGATGGTGAAACTGC+CGG - chr1_4:32334826-32334845 Msa0160280:CDS 45.0%
AGTCAGTCACTATTCAGACC+TGG + chr1_4:32334974-32334993 None:intergenic 45.0%
CTGAATAGTGACTGACTGCA+AGG - chr1_4:32334977-32334996 Msa0160280:CDS 45.0%
AATGCTGCCAACATAAGGAC+TGG - chr1_4:32335374-32335393 Msa0160280:intron 45.0%
AGGAGCTCCAATGTAGTGAT+TGG - chr1_4:32335852-32335871 Msa0160280:intron 45.0%
! GTCATCTGGTCTTCTGTAAG+AGG + chr1_4:32335887-32335906 None:intergenic 45.0%
CCATAGCTGCATATGTCATC+TGG + chr1_4:32335901-32335920 None:intergenic 45.0%
CCAGATGACATATGCAGCTA+TGG - chr1_4:32335898-32335917 Msa0160280:intron 45.0%
ATGGATGCTCATTGCTTGCT+CGG - chr1_4:32335917-32335936 Msa0160280:intron 45.0%
CCCAAGATTTGCACTTCGAA+TGG + chr1_4:32336825-32336844 None:intergenic 45.0%
TTCAGGTGATACCTTCAGCA+GGG - chr1_4:32336948-32336967 Msa0160280:intron 45.0%
! TCTCTGGGAAGCCCATTAAT+TGG + chr1_4:32337121-32337140 None:intergenic 45.0%
GAGAACTTTGATGAGTGGCA+AGG - chr1_4:32337151-32337170 Msa0160280:intron 45.0%
AACTATTGGATCCCAAGGTG+CGG + chr1_4:32337179-32337198 None:intergenic 45.0%
CACCTTGGGATCCAATAGTT+GGG - chr1_4:32337179-32337198 Msa0160280:intron 45.0%
ACCTTGGGATCCAATAGTTG+GGG - chr1_4:32337180-32337199 Msa0160280:intron 45.0%
TATCCATCTCCCCCAACTAT+TGG + chr1_4:32337193-32337212 None:intergenic 45.0%
! GGTTCAGGCTTCTTTGAAGA+AGG + chr1_4:32337612-32337631 None:intergenic 45.0%
CTTCAAAGAAGCCTGAACCA+AGG - chr1_4:32337613-32337632 Msa0160280:intron 45.0%
AATGTGCTCCCTGCTCATAA+CGG - chr1_4:32338048-32338067 Msa0160280:intron 45.0%
! GAAGCCACTTTCAACTGAAG+AGG - chr1_4:32338369-32338388 Msa0160280:intron 45.0%
AGAGGCTATTGAAGCTGCAA+AGG - chr1_4:32338387-32338406 Msa0160280:intron 45.0%
GAGGCTATTGAAGCTGCAAA+GGG - chr1_4:32338388-32338407 Msa0160280:intron 45.0%
CTGTCACCAACTTTATTGGG+AGG - chr1_4:32338471-32338490 Msa0160280:intron 45.0%
CAACTCGCAACAAACTGAAC+AGG + chr1_4:32338506-32338525 None:intergenic 45.0%
AAGGATGTGCACGTGAGTAA+TGG - chr1_4:32338861-32338880 Msa0160280:intron 45.0%
CAGCAACAACAGTTGAGAGA+AGG + chr1_4:32339108-32339127 None:intergenic 45.0%
TCGGTGGATCCATGTTGAAG+GGG + chr1_4:32332627-32332646 None:intergenic 50.0%
! GTTCGGTGGATCCATGTTGA+AGG + chr1_4:32332629-32332648 None:intergenic 50.0%
! GTGACGAAGTGGATTTCGAG+AGG + chr1_4:32332658-32332677 None:intergenic 50.0%
CGAGTTAGGTGAGTGAACTC+GGG + chr1_4:32332694-32332713 None:intergenic 50.0%
! GACGAGGGAGGTTTGAGTTA+GGG + chr1_4:32332719-32332738 None:intergenic 50.0%
CTAACTCAAACCTCCCTCGT+CGG - chr1_4:32332718-32332737 Msa0160280:three_prime_UTR 50.0%
!! GAGTTTTGGTGAGTTCGGAC+GGG + chr1_4:32332763-32332782 None:intergenic 50.0%
! AGACGGTGGGGAATGAGTTT+TGG + chr1_4:32332777-32332796 None:intergenic 50.0%
ATTTGGAGGAGTGAGACGGT+GGG + chr1_4:32332790-32332809 None:intergenic 50.0%
CTCCAAATCGCGTGTCAACT+CGG - chr1_4:32332802-32332821 Msa0160280:three_prime_UTR 50.0%
AAGAGAGAGGGAGGGAGATA+AGG + chr1_4:32332855-32332874 None:intergenic 50.0%
CCCTCCCTCTCTCTTCAATA+TGG - chr1_4:32332860-32332879 Msa0160280:three_prime_UTR 50.0%
CCCATATTGAAGAGAGAGGG+AGG + chr1_4:32332864-32332883 None:intergenic 50.0%
GAAACCAGCATTTCTCGGAG+AGG + chr1_4:32332889-32332908 None:intergenic 50.0%
CTGCGGAAACCAGCATTTCT+CGG + chr1_4:32332894-32332913 None:intergenic 50.0%
CCAACTGAGCTAAGCTCATG+AGG + chr1_4:32333350-32333369 None:intergenic 50.0%
CCTCATGAGCTTAGCTCAGT+TGG - chr1_4:32333347-32333366 Msa0160280:intron 50.0%
GTATACATTCTCGCGTCCCA+AGG + chr1_4:32333549-32333568 None:intergenic 50.0%
CTGGGCAAACTATAGACCTC+TGG - chr1_4:32336006-32336025 Msa0160280:CDS 50.0%
ATTCTACGCTGCAGGAGAGT+TGG - chr1_4:32336778-32336797 Msa0160280:intron 50.0%
GTTCAGGTGATACCTTCAGC+AGG - chr1_4:32336947-32336966 Msa0160280:intron 50.0%
TCAGGTGATACCTTCAGCAG+GGG - chr1_4:32336949-32336968 Msa0160280:intron 50.0%
GCACCTTGGGATCCAATAGT+TGG - chr1_4:32337178-32337197 Msa0160280:intron 50.0%
CCTTGGGATCCAATAGTTGG+GGG - chr1_4:32337181-32337200 Msa0160280:intron 50.0%
GATCCAATAGTTGGGGGAGA+TGG - chr1_4:32337187-32337206 Msa0160280:intron 50.0%
ATGTGCTCCCTGCTCATAAC+GGG - chr1_4:32338049-32338068 Msa0160280:intron 50.0%
ACTCTAGCCCGTTATGAGCA+GGG + chr1_4:32338059-32338078 None:intergenic 50.0%
AACTCTAGCCCGTTATGAGC+AGG + chr1_4:32338060-32338079 None:intergenic 50.0%
CTGGGTTCCCTGAATATGAC+AGG + chr1_4:32338774-32338793 None:intergenic 50.0%
AAGGATGTGCACGTGAGTAG+TGG - chr1_4:32338993-32339012 Msa0160280:CDS 50.0%
!! TCGAGAGGTTTCTGGTTCGG+TGG + chr1_4:32332643-32332662 None:intergenic 55.0%
GTGAGTGAACTCGGGTGAGT+CGG + chr1_4:32332686-32332705 None:intergenic 55.0%
! CGACGAGGGAGGTTTGAGTT+AGG + chr1_4:32332720-32332739 None:intergenic 55.0%
! AGTTCGGACGGGTTTCCACT+CGG + chr1_4:32332752-32332771 None:intergenic 55.0%
TTTGGAGGAGTGAGACGGTG+GGG + chr1_4:32332789-32332808 None:intergenic 55.0%
GATTTGGAGGAGTGAGACGG+TGG + chr1_4:32332791-32332810 None:intergenic 55.0%
! CGCGATTTGGAGGAGTGAGA+CGG + chr1_4:32332794-32332813 None:intergenic 55.0%
! CGAGTTGACACGCGATTTGG+AGG + chr1_4:32332804-32332823 None:intergenic 55.0%
GGAACCTCTCCGAGAAATGC+TGG - chr1_4:32332882-32332901 Msa0160280:three_prime_UTR 55.0%
AAAGTCCGGGGTTCAAACCC+CGG - chr1_4:32333398-32333417 Msa0160280:intron 55.0%
TGAATCACTGCCCCTGCTGA+AGG + chr1_4:32336962-32336981 None:intergenic 55.0%
CCCCCAACTATTGGATCCCA+AGG + chr1_4:32337184-32337203 None:intergenic 55.0%
! AGTCGGTGGTGGTGACGAAG+TGG + chr1_4:32332669-32332688 None:intergenic 60.0%
AGTGAACTCGGGTGAGTCGG+TGG + chr1_4:32332683-32332702 None:intergenic 60.0%
! CGCCGAGTTGACACGCGATT+TGG + chr1_4:32332807-32332826 None:intergenic 60.0%
GGAGGGAGATAAGGTCGAGG+AGG + chr1_4:32332846-32332865 None:intergenic 60.0%
GAGGGAGGGAGATAAGGTCG+AGG + chr1_4:32332849-32332868 None:intergenic 60.0%
CAGGCAACGGTTGCCGAAGA+AGG - chr1_4:32335956-32335975 Msa0160280:intron 60.0%
!! AGTGGCAAGGTACCGCACCT+TGG - chr1_4:32337164-32337183 Msa0160280:intron 60.0%
!! GTGGCAAGGTACCGCACCTT+GGG - chr1_4:32337165-32337184 Msa0160280:intron 60.0%
! CGGGCTAGAGTTTGAGCCCA+TGG - chr1_4:32338068-32338087 Msa0160280:intron 60.0%
GAACTCGGGTGAGTCGGTGG+TGG + chr1_4:32332680-32332699 None:intergenic 65.0%
! CTCGGCGTCGAGTCCGACGA+GGG + chr1_4:32332734-32332753 None:intergenic 70.0%
! ACTCGGCGTCGAGTCCGACG+AGG + chr1_4:32332735-32332754 None:intergenic 70.0%
TCGTCGGACTCGACGCCGAG+TGG - chr1_4:32332734-32332753 Msa0160280:three_prime_UTR 70.0%
GGTGGCCGGGGTTTGAACCC+CGG + chr1_4:32333406-32333425 None:intergenic 70.0%
! GGCGTCGAGTCCGACGAGGG+AGG + chr1_4:32332731-32332750 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 32332557 32339377 32332557 ID=Msa0160280;Name=Msa0160280
chr1_4 mRNA 32332557 32339377 32332557 ID=Msa0160280-mRNA-1;Parent=Msa0160280;Name=Msa0160280-mRNA-1;_AED=0.15;_eAED=0.15;_QI=77|1|1|1|1|1|8|530|513
chr1_4 exon 32332557 32333149 32332557 ID=Msa0160280-mRNA-1:exon:10249;Parent=Msa0160280-mRNA-1
chr1_4 exon 32333442 32333645 32333442 ID=Msa0160280-mRNA-1:exon:10248;Parent=Msa0160280-mRNA-1
chr1_4 exon 32334049 32334172 32334049 ID=Msa0160280-mRNA-1:exon:10247;Parent=Msa0160280-mRNA-1
chr1_4 exon 32334300 32334376 32334300 ID=Msa0160280-mRNA-1:exon:10246;Parent=Msa0160280-mRNA-1
chr1_4 exon 32334697 32335142 32334697 ID=Msa0160280-mRNA-1:exon:10245;Parent=Msa0160280-mRNA-1
chr1_4 exon 32335957 32336080 32335957 ID=Msa0160280-mRNA-1:exon:10244;Parent=Msa0160280-mRNA-1
chr1_4 exon 32337887 32338018 32337887 ID=Msa0160280-mRNA-1:exon:10243;Parent=Msa0160280-mRNA-1
chr1_4 exon 32338929 32339377 32338929 ID=Msa0160280-mRNA-1:exon:10242;Parent=Msa0160280-mRNA-1
chr1_4 five_prime_UTR 32339301 32339377 32339301 ID=Msa0160280-mRNA-1:five_prime_utr;Parent=Msa0160280-mRNA-1
chr1_4 CDS 32338929 32339300 32338929 ID=Msa0160280-mRNA-1:cds;Parent=Msa0160280-mRNA-1
chr1_4 CDS 32337887 32338018 32337887 ID=Msa0160280-mRNA-1:cds;Parent=Msa0160280-mRNA-1
chr1_4 CDS 32335957 32336080 32335957 ID=Msa0160280-mRNA-1:cds;Parent=Msa0160280-mRNA-1
chr1_4 CDS 32334697 32335142 32334697 ID=Msa0160280-mRNA-1:cds;Parent=Msa0160280-mRNA-1
chr1_4 CDS 32334300 32334376 32334300 ID=Msa0160280-mRNA-1:cds;Parent=Msa0160280-mRNA-1
chr1_4 CDS 32334049 32334172 32334049 ID=Msa0160280-mRNA-1:cds;Parent=Msa0160280-mRNA-1
chr1_4 CDS 32333442 32333645 32333442 ID=Msa0160280-mRNA-1:cds;Parent=Msa0160280-mRNA-1
chr1_4 CDS 32333087 32333149 32333087 ID=Msa0160280-mRNA-1:cds;Parent=Msa0160280-mRNA-1
chr1_4 three_prime_UTR 32332557 32333086 32332557 ID=Msa0160280-mRNA-1:three_prime_utr;Parent=Msa0160280-mRNA-1
Gene Sequence

>Msa0160280

ATGGATCCACCGAACCAGAAACCTCTCGAAATCCACTTCGTCACCACCACCGACTCACCCGAGTTCACTCACCTAACTCGTTCCCTAACTCAAACCTCCCTCGTCGGACTCGACGCCGAGTGGAAACCCGTCCGAACTCACCAAAACTCATTCCCCACCGTCTCACTCCTCCAAATCGCGTGTCAACTCGGCGACGACGAAGTAGTTTTCCTCCTCGACCTTATCTCCCTCCCTCTCTCTTCAATATGGGAACCTCTCCGAGAAATGCTGGTTTCCGCAGATATCTTGAAGCTTGGATTCAGATTCAAACAAGATTTAGTTTACTTATCTTCTACCTTTTGTGAACAAGGATGCAATCCCGGTTTCGATAAGGTTGAACCGTATTTGGATATTACGAGTGTGTACAATCATCTTCAGTTTAAGAAAAATGGAAGGATTGCATCGAAGCAGAATAAGAGTTTGTCAACTATTTGTGGAGAATTGTTGGGGATTTCACTATCTAAGGAGCTCCAATGTAGTGATTGGTCACAACGTCCTCTTACAGAAGACCAGATGACATATGCAGCTATGGATGCTCATTGCTTGCTCGGAATATTTAAGGTCTTTCAGGCAACGGTTGCCGAAGAAGGAGAGTTGGTTAACAAGACCAATAGATTATCCATTCGAAGTGCAAATCTTGGGTTGAAAGAGCTATTCAGGAAGCATGATATGAGTGATAAAGTTCATAGCACACAATTTTGTGAAGCTTTGGCAATTGTTCAAGCTACTTCTTGTTCTGATGTTGTTCAGGTGATACCTTCAGCAGGGGCAGTGATTCAAAAGTCATCATGTAGGGATACTAAGCCAATGGATGAATTTTTGTTGAAAATTGTCAGAAAACATGGTGATAGGATTTTGCTAAAGGAGTCAGACAGAGCGCCCAAGACCTCAAAAAAGAAACGGAAGAAGCAGTTGCCAATTAATGGGCTTCCCAGAGAAAAACATTTAGAGAACTTTGATGAGTGGCAAGGTACCGCACCTTGGGATCCAATAGTTGGGGGAGATGGATATCCAAAGTTCCTCTGTGATGTTATGGTTGAAGGCTTGGCAAAACATTTACGTTGTGTTGGGATAGATGCTGCAGTTCCTTCTTCAAAGAAGCCTGAACCAAGAGAGTTAATAACGAAAGCACAAAAAGAGAAAAGAGTGCTTTTGACACGGGATGCAAAGTTACTAAGACACGACTATCAAATATATAAAGTGAAGAGTCTTCTAAAAAATGAACAGCTACTTGAGATTATTGAAACTTTCCAACTAAATATTAACGAAGATCAGCTAATGTCAAGATGCACAAAATGCAATGGAAGGTTTATTCAGAAGCCACTTTCAACTGAAGAGGCTATTGAAGCTGCAAAGGGTTTCCAAAAAATACCAAATTGCTTATTTAACAAGAATTTAGAGTTTTGGCAATGTATGGACTGTCACCAACTTTATTGGGAGGGAACCCAGTACCATAATGCAGTACAGAAGTTCGTTGACATTTGCAAGTTGAGCGATGATTAA

Protein sequence

>Msa0160280

MDPPNQKPLEIHFVTTTDSPEFTHLTRSLTQTSLVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEVVFLLDLISLPLSSIWEPLREMLVSADILKLGFRFKQDLVYLSSTFCEQGCNPGFDKVEPYLDITSVYNHLQFKKNGRIASKQNKSLSTICGELLGISLSKELQCSDWSQRPLTEDQMTYAAMDAHCLLGIFKVFQATVAEEGELVNKTNRLSIRSANLGLKELFRKHDMSDKVHSTQFCEALAIVQATSCSDVVQVIPSAGAVIQKSSCRDTKPMDEFLLKIVRKHGDRILLKESDRAPKTSKKKRKKQLPINGLPREKHLENFDEWQGTAPWDPIVGGDGYPKFLCDVMVEGLAKHLRCVGIDAAVPSSKKPEPRELITKAQKEKRVLLTRDAKLLRHDYQIYKVKSLLKNEQLLEIIETFQLNINEDQLMSRCTKCNGRFIQKPLSTEEAIEAAKGFQKIPNCLFNKNLEFWQCMDCHQLYWEGTQYHNAVQKFVDICKLSDD*