Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162020 | XP_003590783.1 | 95.585 | 521 | 22 | 1 | 1 | 521 | 1 | 520 | 0.0 | 1023 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162020 | sp|Q0WUY1|NADKC_ARATH | 65.344 | 479 | 156 | 3 | 42 | 517 | 59 | 530 | 0.0 | 604 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162020 | G7I3Y0 | 95.585 | 521 | 22 | 1 | 1 | 521 | 1 | 520 | 0.0 | 1023 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0161990 | Msa0162020 | 0.859508 | 3.941672e-63 | -8.615850e-47 |
| Msa0162020 | Msa0162060 | 0.972426 | 9.556280e-135 | -8.615850e-47 |
| Msa0162020 | Msa0162090 | 0.972854 | 1.885793e-135 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162020 | MtrunA17_Chr1g0187021 | 95.585 | 521 | 22 | 1 | 1 | 521 | 1 | 520 | 0.0 | 1023 |
| Msa0162020 | MtrunA17_Chr1g0187051 | 79.655 | 521 | 88 | 4 | 1 | 520 | 1 | 504 | 0.0 | 842 |
| Msa0162020 | MtrunA17_Chr1g0187071 | 69.941 | 509 | 135 | 4 | 12 | 520 | 28 | 518 | 0.0 | 684 |
| Msa0162020 | MtrunA17_Chr1g0184551 | 62.214 | 524 | 177 | 8 | 1 | 516 | 1 | 511 | 0.0 | 647 |
| Msa0162020 | MtrunA17_Chr7g0260781 | 68.785 | 362 | 102 | 4 | 158 | 516 | 17 | 370 | 1.26e-165 | 473 |
| Msa0162020 | MtrunA17_Chr7g0260791 | 48.667 | 150 | 72 | 2 | 15 | 163 | 28 | 173 | 8.38e-41 | 145 |
| Msa0162020 | MtrunA17_Chr1g0187031 | 90.385 | 52 | 5 | 0 | 17 | 68 | 4 | 55 | 6.55e-24 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162020 | AT1G06750.2 | 62.868 | 509 | 169 | 8 | 13 | 516 | 21 | 514 | 0.0 | 613 |
| Msa0162020 | AT1G06750.3 | 62.868 | 509 | 169 | 8 | 13 | 516 | 14 | 507 | 0.0 | 613 |
| Msa0162020 | AT1G06750.1 | 62.868 | 509 | 169 | 8 | 13 | 516 | 14 | 507 | 0.0 | 613 |
| Msa0162020 | AT1G04280.2 | 65.136 | 479 | 157 | 3 | 42 | 517 | 5 | 476 | 0.0 | 604 |
| Msa0162020 | AT1G04280.1 | 65.344 | 479 | 156 | 3 | 42 | 517 | 59 | 530 | 0.0 | 604 |
| Msa0162020 | AT2G30630.1 | 61.373 | 510 | 177 | 8 | 12 | 516 | 27 | 521 | 0.0 | 599 |
| Msa0162020 | AT2G30630.2 | 59.134 | 531 | 176 | 9 | 12 | 516 | 27 | 542 | 0.0 | 588 |
| Msa0162020 | AT2G30630.3 | 59.845 | 386 | 135 | 8 | 12 | 392 | 27 | 397 | 5.48e-147 | 427 |
Find 140 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACAAGTTTGCAATATTT+TGG | 0.119289 | 1_4:-38200568 | None:intergenic |
| CGGCTGCTGCCTCGCGTTAC+CGG | 0.199019 | 1_4:+38196359 | Msa0162020:CDS |
| TCTCACACAAAACAGCTTAT+TGG | 0.201668 | 1_4:+38200735 | Msa0162020:intron |
| ATGGCTTTGGCAGATCATTT+TGG | 0.259344 | 1_4:+38199820 | Msa0162020:intron |
| TCTTGTCACCTTCAGATTCT+TGG | 0.267503 | 1_4:-38199253 | None:intergenic |
| GTCAGCTACAGCTTCTTCTT+TGG | 0.273218 | 1_4:+38196119 | Msa0162020:five_prime_UTR |
| GTTCTGGCTGCCTCCTTTGC+CGG | 0.296647 | 1_4:+38196325 | Msa0162020:CDS |
| TGAATCTCTCTATGTCAAAT+TGG | 0.306179 | 1_4:+38198758 | Msa0162020:CDS |
| CAAAGCATCTTTGAATATCT+TGG | 0.313200 | 1_4:+38198720 | Msa0162020:CDS |
| ATATGTAAGTAGATGAAATA+TGG | 0.325496 | 1_4:+38196014 | Msa0162020:five_prime_UTR |
| AGCAGCCGCGGCAATCAAAC+CGG | 0.340708 | 1_4:-38196344 | None:intergenic |
| TCTTCTTCTGCTTCATTCAC+TGG | 0.342257 | 1_4:-38200256 | None:intergenic |
| CGTCCGCCTCACACATGTTC+TGG | 0.358002 | 1_4:+38196309 | Msa0162020:CDS |
| GATGCTTTGATCACATCCTT+TGG | 0.362853 | 1_4:-38198706 | None:intergenic |
| CATGCTTCAAACTGCTGAAT+TGG | 0.363240 | 1_4:+38199941 | Msa0162020:CDS |
| CAATGGAACCTGGTTCTGTT+TGG | 0.366252 | 1_4:+38200880 | Msa0162020:CDS |
| GTACAATTAATGAAAATTAC+TGG | 0.366745 | 1_4:+38200230 | Msa0162020:CDS |
| CAAGTTGATAAAACAGAATC+TGG | 0.373214 | 1_4:+38196424 | Msa0162020:CDS |
| ACAGAACCAGGTTCCATTGC+TGG | 0.377964 | 1_4:-38200876 | None:intergenic |
| TTCTGAACACTTGACCTTGA+AGG | 0.379470 | 1_4:-38200921 | None:intergenic |
| GGTTCTGGCAGCAGCAATAT+TGG | 0.379686 | 1_4:-38200996 | None:intergenic |
| CATGGTGACCCCTAGAGTTA+AGG | 0.381657 | 1_4:-38199914 | None:intergenic |
| AGCTCCATTTGTTATTAGTC+AGG | 0.384574 | 1_4:+38198833 | Msa0162020:CDS |
| TAAAACAGAATCTGGTCGTT+TGG | 0.388807 | 1_4:+38196432 | Msa0162020:CDS |
| CTCCTCTCACTGAGGGCCAT+GGG | 0.393070 | 1_4:-38199348 | None:intergenic |
| AATACCTTGCTCCATCTTGT+TGG | 0.394670 | 1_4:-38196187 | None:intergenic |
| GAAGAGATGAAAGTAATAAA+TGG | 0.394683 | 1_4:+38199294 | Msa0162020:CDS |
| CACAAACATAAGTACAGAAT+GGG | 0.394745 | 1_4:+38200181 | Msa0162020:CDS |
| CTTTGGCTCTAGTCTATTTG+TGG | 0.405028 | 1_4:+38196136 | Msa0162020:five_prime_UTR |
| ACTCCTCTCACTGAGGGCCA+TGG | 0.405385 | 1_4:-38199349 | None:intergenic |
| GGATATCTTGCAGTTATTAG+AGG | 0.406489 | 1_4:+38200361 | Msa0162020:CDS |
| TTGCAGTTATTAGAGGCATT+AGG | 0.422529 | 1_4:+38200368 | Msa0162020:CDS |
| ACTTTGTTCTGTCACCTTCA+AGG | 0.433602 | 1_4:+38200907 | Msa0162020:CDS |
| CCAGGTTCCATTGCTGGGCT+AGG | 0.437394 | 1_4:-38200870 | None:intergenic |
| ATGTTCATGGGTGGTGGCAT+GGG | 0.437437 | 1_4:+38199381 | Msa0162020:CDS |
| TGAATATCTTGGCAATGAAA+AGG | 0.438416 | 1_4:+38198731 | Msa0162020:CDS |
| ATGGGTGGTGGCATGGGAGC+AGG | 0.440674 | 1_4:+38199387 | Msa0162020:CDS |
| CAACAAGAGGAAAATTCTAC+AGG | 0.441415 | 1_4:+38200283 | Msa0162020:CDS |
| AATGTTCATGGGTGGTGGCA+TGG | 0.442939 | 1_4:+38199380 | Msa0162020:CDS |
| CAAGTGTTCAGAAAGAGTTA+AGG | 0.445444 | 1_4:+38200931 | Msa0162020:CDS |
| CTCTATTGCACAGATGCTAT+TGG | 0.445603 | 1_4:+38200601 | Msa0162020:CDS |
| ATGGTGACCCCTAGAGTTAA+GGG | 0.446844 | 1_4:-38199913 | None:intergenic |
| GTGTTGGCAGCTAGGCAAAT+AGG | 0.451665 | 1_4:+38198621 | Msa0162020:intron |
| TATATAAAGCCCTTAACTCT+AGG | 0.453952 | 1_4:+38199904 | Msa0162020:CDS |
| GAAGCTGAAAGAAATTCTAT+TGG | 0.458873 | 1_4:+38198983 | Msa0162020:CDS |
| CGCGGCAATCAAACCGGCAA+AGG | 0.461673 | 1_4:-38196338 | None:intergenic |
| TTCCATCTGTGAACTTTACA+AGG | 0.465735 | 1_4:+38200845 | Msa0162020:CDS |
| TGAACCTGACTAATAACAAA+TGG | 0.468847 | 1_4:-38198837 | None:intergenic |
| CCACCCATGAACATTAGAAC+TGG | 0.479997 | 1_4:-38199372 | None:intergenic |
| ATATAAAGCCCTTAACTCTA+GGG | 0.487320 | 1_4:+38199905 | Msa0162020:CDS |
| GCAATAGTCTGCTCGACAAA+AGG | 0.487335 | 1_4:-38200142 | None:intergenic |
| AAGTGTTCAGAAAGAGTTAA+GGG | 0.487553 | 1_4:+38200932 | Msa0162020:CDS |
| GACAAAAGGTTCCCATGATA+AGG | 0.487948 | 1_4:-38200128 | None:intergenic |
| GAGTCCAGTTCTAATGTTCA+TGG | 0.488035 | 1_4:+38199368 | Msa0162020:CDS |
| GACAAGAGTGTTCTCTACTT+TGG | 0.492501 | 1_4:+38199269 | Msa0162020:CDS |
| CCACCGTCGACTCTTGCTTC+CGG | 0.496739 | 1_4:-38196378 | None:intergenic |
| AACAGGAGAGCTATTATGAC+AGG | 0.506463 | 1_4:+38200487 | Msa0162020:intron |
| TCATGGACGGTACCTTATCA+TGG | 0.507812 | 1_4:+38200116 | Msa0162020:CDS |
| GCAAACTTGTTGACAGTGCT+AGG | 0.509508 | 1_4:+38200578 | Msa0162020:CDS |
| GGCAATCAAACCGGCAAAGG+AGG | 0.512110 | 1_4:-38196335 | None:intergenic |
| AAGACAGTAACACTTGGTTC+TGG | 0.512285 | 1_4:-38201011 | None:intergenic |
| GTTCTAATGTTCATGGGTGG+TGG | 0.513078 | 1_4:+38199375 | Msa0162020:CDS |
| CTAGTTGGTGTGGTTTGTGA+TGG | 0.513280 | 1_4:+38200340 | Msa0162020:CDS |
| TCACAAACATAAGTACAGAA+TGG | 0.515042 | 1_4:+38200180 | Msa0162020:CDS |
| ACTTACATATATTAAATAAG+TGG | 0.515405 | 1_4:-38196001 | None:intergenic |
| CCTAGCCCAGCAATGGAACC+TGG | 0.516557 | 1_4:+38200870 | Msa0162020:CDS |
| TCCTCTCACTGAGGGCCATG+GGG | 0.524414 | 1_4:-38199347 | None:intergenic |
| CCAACTAGCTCAATTCTGTA+AGG | 0.525410 | 1_4:-38200325 | None:intergenic |
| CCTTACAGAATTGAGCTAGT+TGG | 0.526663 | 1_4:+38200325 | Msa0162020:CDS |
| TAGAGATGATGCAGCATCAG+TGG | 0.527175 | 1_4:-38200059 | None:intergenic |
| CAGAATTGAGCTAGTTGGTG+TGG | 0.527716 | 1_4:+38200330 | Msa0162020:CDS |
| AGGAGCAGCTTCAAAGGCTG+TGG | 0.528800 | 1_4:+38199845 | Msa0162020:CDS |
| TTCAAAGGCTGTGGTTGTTG+AGG | 0.529864 | 1_4:+38199854 | Msa0162020:CDS |
| TTCCTTGTAAAGTTCACAGA+TGG | 0.536025 | 1_4:-38200847 | None:intergenic |
| GGAACCTGGTTCTGTTTGGA+AGG | 0.537364 | 1_4:+38200884 | Msa0162020:CDS |
| TTGGTTAGGAGCAGCTTCAA+AGG | 0.537556 | 1_4:+38199839 | Msa0162020:CDS |
| TGTCGAGCAGACTATTGCTA+TGG | 0.539450 | 1_4:+38200147 | Msa0162020:CDS |
| TATTGCACAGATGCTATTGG+TGG | 0.547648 | 1_4:+38200604 | Msa0162020:CDS |
| GTAACGCGAGGCAGCAGCCG+CGG | 0.551342 | 1_4:-38196356 | None:intergenic |
| AACATTACATACCAACATAG+TGG | 0.553720 | 1_4:-38196474 | None:intergenic |
| CAGAACCAGGTTCCATTGCT+GGG | 0.554057 | 1_4:-38200875 | None:intergenic |
| ACACAAAACAGCTTATTGGA+TGG | 0.556173 | 1_4:+38200739 | Msa0162020:intron |
| AAATTCTATTGGCAGCTACA+AGG | 0.556844 | 1_4:+38198994 | Msa0162020:CDS |
| CCACTTGATTTGAGTGCTAG+AGG | 0.560233 | 1_4:+38196082 | Msa0162020:five_prime_UTR |
| CAAAGGGCGAGATGTGATCA+TGG | 0.564773 | 1_4:+38200099 | Msa0162020:CDS |
| TCCCCATGGCCCTCAGTGAG+AGG | 0.570944 | 1_4:+38199346 | Msa0162020:CDS |
| AATCTCAATCTCCAACAAGA+TGG | 0.572542 | 1_4:+38196176 | Msa0162020:exon |
| TTCACAAACTAAAGAAGTCA+TGG | 0.573532 | 1_4:+38199323 | Msa0162020:CDS |
| AAGTCCTTCCAAACAGAACC+AGG | 0.574180 | 1_4:-38200888 | None:intergenic |
| AGTGCTAGAGGTAACAATCA+AGG | 0.575528 | 1_4:+38196094 | Msa0162020:five_prime_UTR |
| TGCTATTGGTGGTCCACCGA+AGG | 0.575982 | 1_4:+38200615 | Msa0162020:CDS |
| TATGACAGGAAGGGCAGTGA+GGG | 0.577678 | 1_4:+38200501 | Msa0162020:CDS |
| GGAGAGCTATTATGACAGGA+AGG | 0.580051 | 1_4:+38200491 | Msa0162020:intron |
| GAAAAGTTCTCCCACTATGT+TGG | 0.580569 | 1_4:+38196463 | Msa0162020:CDS |
| AGAAGAAGAACATCAACAAG+AGG | 0.581089 | 1_4:+38200270 | Msa0162020:CDS |
| CAAGGAACCTAGCCCAGCAA+TGG | 0.583071 | 1_4:+38200863 | Msa0162020:CDS |
| ACATTACATACCAACATAGT+GGG | 0.583296 | 1_4:-38196473 | None:intergenic |
| TACAATTAATGAAAATTACT+GGG | 0.585080 | 1_4:+38200231 | Msa0162020:CDS |
| AACTGGACTCCTCTCACTGA+GGG | 0.586342 | 1_4:-38199355 | None:intergenic |
| CAGCTTATTGGATGGAAGGA+GGG | 0.587320 | 1_4:+38200747 | Msa0162020:intron |
| AAAACAGCTTATTGGATGGA+AGG | 0.588568 | 1_4:+38200743 | Msa0162020:intron |
| CAGAACATGTGTGAGGCGGA+CGG | 0.590928 | 1_4:-38196308 | None:intergenic |
| ATCTCCAACAAGATGGAGCA+AGG | 0.592137 | 1_4:+38196183 | Msa0162020:exon |
| TAGTGGCGGCTCTAAACAAA+GGG | 0.593741 | 1_4:+38200083 | Msa0162020:CDS |
| CTTCATAAGACAGTAACACT+TGG | 0.596432 | 1_4:-38201017 | None:intergenic |
| TGCATCATCTCTACTAGTGG+CGG | 0.597453 | 1_4:+38200069 | Msa0162020:CDS |
| TAAAGAAGTCATGGTCCCCA+TGG | 0.598959 | 1_4:+38199332 | Msa0162020:CDS |
| TGCTGCATCATCTCTACTAG+TGG | 0.599865 | 1_4:+38200066 | Msa0162020:CDS |
| CGTTCACATACAGGAAACAA+AGG | 0.601088 | 1_4:+38199217 | Msa0162020:intron |
| AGTCCAGTTCTAATGTTCAT+GGG | 0.602486 | 1_4:+38199369 | Msa0162020:CDS |
| CATGGACGGTACCTTATCAT+GGG | 0.602582 | 1_4:+38200117 | Msa0162020:CDS |
| AACAAGAGGAAAATTCTACA+GGG | 0.606029 | 1_4:+38200284 | Msa0162020:CDS |
| GAGATGAAAGTAATAAATGG+TGG | 0.609786 | 1_4:+38199297 | Msa0162020:CDS |
| CCTCTAGCACTCAAATCAAG+TGG | 0.612479 | 1_4:-38196082 | None:intergenic |
| CAGTTTGAAGCATGTCAGCA+TGG | 0.615090 | 1_4:-38199932 | None:intergenic |
| ACAGCTTATTGGATGGAAGG+AGG | 0.616233 | 1_4:+38200746 | Msa0162020:intron |
| TGGGCAAGTATGCATAACTC+TGG | 0.617131 | 1_4:-38198666 | None:intergenic |
| GAGAGCTATTATGACAGGAA+GGG | 0.618202 | 1_4:+38200492 | Msa0162020:CDS |
| GGATATAAAGTAGCTGCGGA+TGG | 0.621827 | 1_4:+38200208 | Msa0162020:CDS |
| CTCTTGCTTCCGGTAACGCG+AGG | 0.623457 | 1_4:-38196368 | None:intergenic |
| GGGCGAGATGTGATCATGGA+CGG | 0.630170 | 1_4:+38200103 | Msa0162020:CDS |
| CTAGTGGCGGCTCTAAACAA+AGG | 0.630500 | 1_4:+38200082 | Msa0162020:CDS |
| AGGATTTGAAGATGCAAGTG+AGG | 0.631153 | 1_4:+38198641 | Msa0162020:CDS |
| GAGAGTAACCAAGAATCTGA+AGG | 0.632638 | 1_4:+38199245 | Msa0162020:CDS |
| CTTTGCCGGTTTGATTGCCG+CGG | 0.633840 | 1_4:+38196339 | Msa0162020:CDS |
| AATCTACTAGAGGATCCTGT+AGG | 0.641211 | 1_4:+38200777 | Msa0162020:CDS |
| CCAGTTCTAATGTTCATGGG+TGG | 0.641784 | 1_4:+38199372 | Msa0162020:CDS |
| TATAAAGCCCTTAACTCTAG+GGG | 0.644037 | 1_4:+38199906 | Msa0162020:CDS |
| CAGCCAGAACATGTGTGAGG+CGG | 0.646050 | 1_4:-38196312 | None:intergenic |
| GGGTGATCACAATCTACTAG+AGG | 0.647681 | 1_4:+38200767 | Msa0162020:CDS |
| AATGAAATGCAAAATAACTG+AGG | 0.656048 | 1_4:-38198803 | None:intergenic |
| TTACCGGAAGCAAGAGTCGA+CGG | 0.658682 | 1_4:+38196375 | Msa0162020:CDS |
| ACAAACATAAGTACAGAATG+GGG | 0.664528 | 1_4:+38200182 | Msa0162020:CDS |
| AGGCAGCCAGAACATGTGTG+AGG | 0.672431 | 1_4:-38196315 | None:intergenic |
| GAACTGGACTCCTCTCACTG+AGG | 0.673724 | 1_4:-38199356 | None:intergenic |
| GGTAGGATATAAAGTAGCTG+CGG | 0.692491 | 1_4:+38200204 | Msa0162020:CDS |
| ACAAGAGGAAAATTCTACAG+GGG | 0.709176 | 1_4:+38200285 | Msa0162020:CDS |
| TTATGACAGGAAGGGCAGTG+AGG | 0.719044 | 1_4:+38200500 | Msa0162020:CDS |
| CAAACATAAGTACAGAATGG+GGG | 0.724586 | 1_4:+38200183 | Msa0162020:CDS |
| CCGGAAGCAAGAGTCGACGG+TGG | 0.756030 | 1_4:+38196378 | Msa0162020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTTTTTATTTTTA+TGG | + | chr1_4:38201157-38201176 | Msa0162020:three_prime_UTR | 0.0% |
| !!! | TTTTTATTTTTTATTTTTAT+GGG | + | chr1_4:38201158-38201177 | Msa0162020:three_prime_UTR | 0.0% |
| !! | TAATCTATAAATATTTATGT+CGG | + | chr1_4:38196979-38196998 | Msa0162020:intron | 10.0% |
| !!! | TTTTAATTAACAATTTATGT+GGG | - | chr1_4:38197055-38197074 | None:intergenic | 10.0% |
| !! | ATATCCAAATAAATATTATT+TGG | + | chr1_4:38197321-38197340 | Msa0162020:intron | 10.0% |
| !! | TATCCAAATAAATATTATTT+GGG | + | chr1_4:38197322-38197341 | Msa0162020:intron | 10.0% |
| !! | AAAATTAAATGATTTGAATT+GGG | - | chr1_4:38197809-38197828 | None:intergenic | 10.0% |
| !! | AAAAATTAAATGATTTGAAT+TGG | - | chr1_4:38197810-38197829 | None:intergenic | 10.0% |
| !! | ATTCAAAACAATTTATTATT+AGG | - | chr1_4:38197972-38197991 | None:intergenic | 10.0% |
| !!! | AATAAATTTTTTTAAAAGCA+AGG | + | chr1_4:38198119-38198138 | Msa0162020:intron | 10.0% |
| !! | ACTTACATATATTAAATAAG+TGG | - | chr1_4:38196004-38196023 | None:intergenic | 15.0% |
| !! | AAATCACTACTATAATATAA+AGG | + | chr1_4:38196752-38196771 | Msa0162020:intron | 15.0% |
| !! | AAAAGAAAATTCTCATATTA+TGG | + | chr1_4:38196800-38196819 | Msa0162020:intron | 15.0% |
| !! | AAAGAAAATTCTCATATTAT+GGG | + | chr1_4:38196801-38196820 | Msa0162020:intron | 15.0% |
| !! | ATCAAAAAATTGTAACAAAA+TGG | + | chr1_4:38196916-38196935 | Msa0162020:intron | 15.0% |
| !!! | CTTTTAATTAACAATTTATG+TGG | - | chr1_4:38197056-38197075 | None:intergenic | 15.0% |
| !!! | ACATTAACTATTTTCATATA+AGG | + | chr1_4:38197594-38197613 | Msa0162020:intron | 15.0% |
| !! | ATATTAACGAAATATTTCAA+CGG | + | chr1_4:38197681-38197700 | Msa0162020:intron | 15.0% |
| !! | AAATTAAATGATTTGAATTG+GGG | - | chr1_4:38197808-38197827 | None:intergenic | 15.0% |
| !!! | TTCAAAACAACTTTTTTTTT+AGG | - | chr1_4:38197996-38198015 | None:intergenic | 15.0% |
| !! | AACTTTAGTCTATAAAAATT+AGG | + | chr1_4:38198088-38198107 | Msa0162020:intron | 15.0% |
| !!! | CAAAATTCAGAATTTTAATT+TGG | + | chr1_4:38198583-38198602 | Msa0162020:intron | 15.0% |
| !!! | TATAATGATGTAACATTTTA+AGG | - | chr1_4:38199112-38199131 | None:intergenic | 15.0% |
| !! | TTATGCCTAAATAAATATTA+TGG | + | chr1_4:38199801-38199820 | Msa0162020:intron | 15.0% |
| !! | TACAATTAATGAAAATTACT+GGG | + | chr1_4:38200231-38200250 | Msa0162020:CDS | 15.0% |
| !! | ACTATATTAATATACTTTAG+TGG | + | chr1_4:38200414-38200433 | Msa0162020:intron | 15.0% |
| !!! | TTTTTTATTTTTATGGGTTT+TGG | + | chr1_4:38201164-38201183 | Msa0162020:three_prime_UTR | 15.0% |
| !! | ATATGTAAGTAGATGAAATA+TGG | + | chr1_4:38196014-38196033 | Msa0162020:five_prime_UTR | 20.0% |
| !!! | ATGTAATGTTTCACTTTTTT+TGG | + | chr1_4:38196487-38196506 | Msa0162020:intron | 20.0% |
| !!! | TGTAATGTTTCACTTTTTTT+GGG | + | chr1_4:38196488-38196507 | Msa0162020:intron | 20.0% |
| !! | AAAGAAAAAAAAGTAGTGTA+AGG | + | chr1_4:38196677-38196696 | Msa0162020:intron | 20.0% |
| !!! | TTCTTTTGAAGGATAATTTT+AGG | - | chr1_4:38196787-38196806 | None:intergenic | 20.0% |
| !!! | ATATGAGAATTTTCTTTTGA+AGG | - | chr1_4:38196798-38196817 | None:intergenic | 20.0% |
| !! | AAGAAAATTCTCATATTATG+GGG | + | chr1_4:38196802-38196821 | Msa0162020:intron | 20.0% |
| !! | AAGAAAGATAATTCAAAACA+GGG | + | chr1_4:38197260-38197279 | Msa0162020:intron | 20.0% |
| !! | TACCTAAATCAACATTATTT+GGG | - | chr1_4:38197439-38197458 | None:intergenic | 20.0% |
| !! | ATACCTAAATCAACATTATT+TGG | - | chr1_4:38197440-38197459 | None:intergenic | 20.0% |
| !! | AGTAAATACATATGACATTA+AGG | + | chr1_4:38197632-38197651 | Msa0162020:intron | 20.0% |
| !! | TGAATTAACTAAATGCAAAT+TGG | + | chr1_4:38197852-38197871 | Msa0162020:intron | 20.0% |
| !! | TATCTGACGTTAATTTAATT+GGG | - | chr1_4:38197936-38197955 | None:intergenic | 20.0% |
| !! | ATATCTGACGTTAATTTAAT+TGG | - | chr1_4:38197937-38197956 | None:intergenic | 20.0% |
| !! | TAACTTAATTAAGACTATCT+TGG | - | chr1_4:38198180-38198199 | None:intergenic | 20.0% |
| !! | TGTTTACAAATTTACTCTAA+AGG | - | chr1_4:38198262-38198281 | None:intergenic | 20.0% |
| !! | TAAGAACAAAAATATCAACA+AGG | - | chr1_4:38198454-38198473 | None:intergenic | 20.0% |
| !! | AACATTAATATCTCATTGAA+GGG | - | chr1_4:38198516-38198535 | None:intergenic | 20.0% |
| !! | CAAAGCCATAATATTTATTT+AGG | - | chr1_4:38199809-38199828 | None:intergenic | 20.0% |
| !! | CTAAATAAATATTATGGCTT+TGG | + | chr1_4:38199807-38199826 | Msa0162020:intron | 20.0% |
| !! | GTACAATTAATGAAAATTAC+TGG | + | chr1_4:38200230-38200249 | Msa0162020:CDS | 20.0% |
| !!! | TATAGTTAACATTTTCCTTT+TGG | + | chr1_4:38200458-38200477 | Msa0162020:intron | 20.0% |
| !! | AAGTGTGATGTTATAAAAAA+AGG | + | chr1_4:38201037-38201056 | Msa0162020:intron | 20.0% |
| !! | AGTGTGATGTTATAAAAAAA+GGG | + | chr1_4:38201038-38201057 | Msa0162020:intron | 20.0% |
| !! | TAAAAAAAGGGAAATGTTAA+CGG | + | chr1_4:38201050-38201069 | Msa0162020:intron | 20.0% |
| !!! | AGTTCATAATGTTTTTCAGA+TGG | + | chr1_4:38196274-38196293 | Msa0162020:intron | 25.0% |
| !!! | TAATGTTTTTCAGATGGTAT+TGG | + | chr1_4:38196280-38196299 | Msa0162020:intron | 25.0% |
| !! | CACAAGAATTTTGTTAGTAT+GGG | + | chr1_4:38196849-38196868 | Msa0162020:intron | 25.0% |
| !! | ATTCATTTCTCTTTTGTTAG+AGG | + | chr1_4:38196955-38196974 | Msa0162020:intron | 25.0% |
| !! | TTCATTTCTCTTTTGTTAGA+GGG | + | chr1_4:38196956-38196975 | Msa0162020:intron | 25.0% |
| !!! | ATATTTATGTCGGTGTTTTT+TGG | + | chr1_4:38196989-38197008 | Msa0162020:intron | 25.0% |
| ! | CAAGAAAGATAATTCAAAAC+AGG | + | chr1_4:38197259-38197278 | Msa0162020:intron | 25.0% |
| ! | AGAAAGATAATTCAAAACAG+GGG | + | chr1_4:38197261-38197280 | Msa0162020:intron | 25.0% |
| ! | TTCACATTCATAACCTAAAA+TGG | - | chr1_4:38197483-38197502 | None:intergenic | 25.0% |
| !! | CATTAAGGAAGTATATTAAC+TGG | + | chr1_4:38197647-38197666 | Msa0162020:intron | 25.0% |
| ! | TTGAAATTTCGATACATTGA+AGG | + | chr1_4:38197747-38197766 | Msa0162020:intron | 25.0% |
| !! | AACTAAATGCAAATTGGTTT+AGG | + | chr1_4:38197858-38197877 | Msa0162020:intron | 25.0% |
| ! | GTTAAGCTTGAATATTTGAT+AGG | - | chr1_4:38198047-38198066 | None:intergenic | 25.0% |
| ! | ATCACAAGAATTAAGAAAGT+TGG | - | chr1_4:38198316-38198335 | None:intergenic | 25.0% |
| ! | CGAATGTAATAAAAAATAGC+AGG | + | chr1_4:38198364-38198383 | Msa0162020:intron | 25.0% |
| ! | CAACATTAATATCTCATTGA+AGG | - | chr1_4:38198517-38198536 | None:intergenic | 25.0% |
| ! | AATGAAATGCAAAATAACTG+AGG | - | chr1_4:38198806-38198825 | None:intergenic | 25.0% |
| !!! | TCAGTTATTTTGCATTTCAT+TGG | + | chr1_4:38198805-38198824 | Msa0162020:CDS | 25.0% |
| ! | TTATAGAGTTAGACAATTCA+AGG | + | chr1_4:38199127-38199146 | Msa0162020:intron | 25.0% |
| ! | GAAGAGATGAAAGTAATAAA+TGG | + | chr1_4:38199294-38199313 | Msa0162020:CDS | 25.0% |
| ! | GATTATTTAATGTCTGCATT+TGG | + | chr1_4:38199575-38199594 | Msa0162020:intron | 25.0% |
| !!! | ATACATGCATTTTTTGTGAA+AGG | + | chr1_4:38199708-38199727 | Msa0162020:intron | 25.0% |
| ! | AAACATTTCAAAATCTGAAC+AGG | + | chr1_4:38200024-38200043 | Msa0162020:intron | 25.0% |
| !!! | TTTCCTTTTGGAATTTTAAC+AGG | + | chr1_4:38200470-38200489 | Msa0162020:intron | 25.0% |
| !! | TCAACAAGTTTGCAATATTT+TGG | - | chr1_4:38200571-38200590 | None:intergenic | 25.0% |
| ! | AAAAAAAGGGAAATGTTAAC+GGG | + | chr1_4:38201051-38201070 | Msa0162020:intron | 25.0% |
| ! | GATTCTGTTTTATCAACTTG+AGG | - | chr1_4:38196424-38196443 | None:intergenic | 30.0% |
| !! | CAAGTTGATAAAACAGAATC+TGG | + | chr1_4:38196424-38196443 | Msa0162020:CDS | 30.0% |
| ACATTACATACCAACATAGT+GGG | - | chr1_4:38196476-38196495 | None:intergenic | 30.0% | |
| AACATTACATACCAACATAG+TGG | - | chr1_4:38196477-38196496 | None:intergenic | 30.0% | |
| ACAGTGAGATTGAAAAAGAA+AGG | - | chr1_4:38196543-38196562 | None:intergenic | 30.0% | |
| ! | GCACAAGAATTTTGTTAGTA+TGG | + | chr1_4:38196848-38196867 | Msa0162020:intron | 30.0% |
| TTTGTTAGTATGGGAAAGAA+AGG | + | chr1_4:38196858-38196877 | Msa0162020:intron | 30.0% | |
| GCGCCCAAATAATATTTATT+TGG | - | chr1_4:38197328-38197347 | None:intergenic | 30.0% | |
| !! | TGCCCAAATAATGTTGATTT+AGG | + | chr1_4:38197434-38197453 | Msa0162020:intron | 30.0% |
| AAAATGGAGAAAGTCTTTCA+TGG | - | chr1_4:38197467-38197486 | None:intergenic | 30.0% | |
| ! | TGAAAGACTTTCTCCATTTT+AGG | + | chr1_4:38197467-38197486 | Msa0162020:intron | 30.0% |
| GATAAATTGAAAAACGACTC+TGG | - | chr1_4:38197514-38197533 | None:intergenic | 30.0% | |
| GAAGGAATATTGTAGATACA+CGG | + | chr1_4:38197765-38197784 | Msa0162020:intron | 30.0% | |
| AAGGAATATTGTAGATACAC+GGG | + | chr1_4:38197766-38197785 | Msa0162020:intron | 30.0% | |
| ! | AAATGCAAATTGGTTTAGGT+AGG | + | chr1_4:38197862-38197881 | Msa0162020:intron | 30.0% |
| GTAATAAAAAATAGCAGGAC+AGG | + | chr1_4:38198369-38198388 | Msa0162020:intron | 30.0% | |
| AACAAGGTCATTCTTTACTA+GGG | - | chr1_4:38198438-38198457 | None:intergenic | 30.0% | |
| AATTGTTGCCATATACTAGT+AGG | + | chr1_4:38198475-38198494 | Msa0162020:intron | 30.0% | |
| TTAATATCTCATTGAAGGGA+GGG | - | chr1_4:38198512-38198531 | None:intergenic | 30.0% | |
| ATTAATATCTCATTGAAGGG+AGG | - | chr1_4:38198513-38198532 | None:intergenic | 30.0% | |
| ! | GGATTTTTGCAGATATTCTT+GGG | - | chr1_4:38198688-38198707 | None:intergenic | 30.0% |
| ! | TGGATTTTTGCAGATATTCT+TGG | - | chr1_4:38198689-38198708 | None:intergenic | 30.0% |
| GAATATCTGCAAAAATCCAA+AGG | + | chr1_4:38198690-38198709 | Msa0162020:CDS | 30.0% | |
| ! | CAAAGCATCTTTGAATATCT+TGG | + | chr1_4:38198720-38198739 | Msa0162020:CDS | 30.0% |
| TGAATATCTTGGCAATGAAA+AGG | + | chr1_4:38198731-38198750 | Msa0162020:CDS | 30.0% | |
| TGAATCTCTCTATGTCAAAT+TGG | + | chr1_4:38198758-38198777 | Msa0162020:CDS | 30.0% | |
| TGAACCTGACTAATAACAAA+TGG | - | chr1_4:38198840-38198859 | None:intergenic | 30.0% | |
| ACATACTCAATACTTAACTG+AGG | - | chr1_4:38198913-38198932 | None:intergenic | 30.0% | |
| GTATTGAGTATGTCTTTCTT+CGG | + | chr1_4:38198920-38198939 | Msa0162020:intron | 30.0% | |
| GAAGCTGAAAGAAATTCTAT+TGG | + | chr1_4:38198983-38199002 | Msa0162020:CDS | 30.0% | |
| GAGATGAAAGTAATAAATGG+TGG | + | chr1_4:38199297-38199316 | Msa0162020:CDS | 30.0% | |
| TTCACAAACTAAAGAAGTCA+TGG | + | chr1_4:38199323-38199342 | Msa0162020:CDS | 30.0% | |
| ATAATCCAACAATCGAATTG+AGG | - | chr1_4:38199561-38199580 | None:intergenic | 30.0% | |
| TATATAAAGCCCTTAACTCT+AGG | + | chr1_4:38199904-38199923 | Msa0162020:CDS | 30.0% | |
| ATATAAAGCCCTTAACTCTA+GGG | + | chr1_4:38199905-38199924 | Msa0162020:CDS | 30.0% | |
| TCACAAACATAAGTACAGAA+TGG | + | chr1_4:38200180-38200199 | Msa0162020:CDS | 30.0% | |
| CACAAACATAAGTACAGAAT+GGG | + | chr1_4:38200181-38200200 | Msa0162020:CDS | 30.0% | |
| ACAAACATAAGTACAGAATG+GGG | + | chr1_4:38200182-38200201 | Msa0162020:CDS | 30.0% | |
| AACAAGAGGAAAATTCTACA+GGG | + | chr1_4:38200284-38200303 | Msa0162020:CDS | 30.0% | |
| ATTAGGTGTATATATGCTTG+TGG | + | chr1_4:38200385-38200404 | Msa0162020:intron | 30.0% | |
| TCTCCTGTTAAAATTCCAAA+AGG | - | chr1_4:38200476-38200495 | None:intergenic | 30.0% | |
| TGTAAAATCAAACACAAGCA+AGG | - | chr1_4:38200660-38200679 | None:intergenic | 30.0% | |
| AAAAGCTTGAAAAATGTAGC+AGG | + | chr1_4:38200804-38200823 | Msa0162020:CDS | 30.0% | |
| AAGTGTTCAGAAAGAGTTAA+GGG | + | chr1_4:38200932-38200951 | Msa0162020:CDS | 30.0% | |
| !!! | GGACTTCTCTATTTTTTGAA+TGG | - | chr1_4:38200961-38200980 | None:intergenic | 30.0% |
| ! | TATTGGTCACATTTTTCTGA+TGG | - | chr1_4:38200982-38201001 | None:intergenic | 30.0% |
| AAAAAAGGGAAATGTTAACG+GGG | + | chr1_4:38201052-38201071 | Msa0162020:intron | 30.0% | |
| AATCTCAATCTCCAACAAGA+TGG | + | chr1_4:38196176-38196195 | Msa0162020:exon | 35.0% | |
| TAAAACAGAATCTGGTCGTT+TGG | + | chr1_4:38196432-38196451 | Msa0162020:CDS | 35.0% | |
| !!! | GAGTTTTGAGGCTATCATTT+TGG | - | chr1_4:38196632-38196651 | None:intergenic | 35.0% |
| ! | AATACACCACTTGAGTTTTG+AGG | - | chr1_4:38196644-38196663 | None:intergenic | 35.0% |
| AGTGGTGTATTAGTCAAAAG+AGG | + | chr1_4:38196653-38196672 | Msa0162020:intron | 35.0% | |
| !!! | TTTTGAAACTCGACGAACAA+AGG | - | chr1_4:38197027-38197046 | None:intergenic | 35.0% |
| ATCTGCAAAATCAACTGTGT+TGG | + | chr1_4:38197168-38197187 | Msa0162020:intron | 35.0% | |
| !! | ACAGGGGTAATAGTCATTTT+AGG | + | chr1_4:38197277-38197296 | Msa0162020:intron | 35.0% |
| !! | CAGGGGTAATAGTCATTTTA+GGG | + | chr1_4:38197278-38197297 | Msa0162020:intron | 35.0% |
| TGGTGAATGAGAGAATTCAT+TGG | - | chr1_4:38198160-38198179 | None:intergenic | 35.0% | |
| CAACAAGGTCATTCTTTACT+AGG | - | chr1_4:38198439-38198458 | None:intergenic | 35.0% | |
| AAAGCCTACCTACTAGTATA+TGG | - | chr1_4:38198486-38198505 | None:intergenic | 35.0% | |
| ! | TATACTAGTAGGTAGGCTTT+TGG | + | chr1_4:38198486-38198505 | Msa0162020:intron | 35.0% |
| !! | AGCTCCATTTGTTATTAGTC+AGG | + | chr1_4:38198833-38198852 | Msa0162020:CDS | 35.0% |
| TCTTTCTTCGGCTAAATTCT+AGG | + | chr1_4:38198932-38198951 | Msa0162020:intron | 35.0% | |
| AAATTCTATTGGCAGCTACA+AGG | + | chr1_4:38198994-38199013 | Msa0162020:CDS | 35.0% | |
| ! | AGTCCAGTTCTAATGTTCAT+GGG | + | chr1_4:38199369-38199388 | Msa0162020:CDS | 35.0% |
| TTTGGATCAATCCAACTATG+AGG | + | chr1_4:38199593-38199612 | Msa0162020:intron | 35.0% | |
| !!! | TTTGGCAGATCATTTTGGTT+AGG | + | chr1_4:38199825-38199844 | Msa0162020:intron | 35.0% |
| TATAAAGCCCTTAACTCTAG+GGG | + | chr1_4:38199906-38199925 | Msa0162020:CDS | 35.0% | |
| ACCTTCATGCAATGTTACTA+TGG | + | chr1_4:38199987-38200006 | Msa0162020:intron | 35.0% | |
| ACCATAGTAACATTGCATGA+AGG | - | chr1_4:38199991-38200010 | None:intergenic | 35.0% | |
| CAAACATAAGTACAGAATGG+GGG | + | chr1_4:38200183-38200202 | Msa0162020:CDS | 35.0% | |
| AGAAGAAGAACATCAACAAG+AGG | + | chr1_4:38200270-38200289 | Msa0162020:CDS | 35.0% | |
| CAACAAGAGGAAAATTCTAC+AGG | + | chr1_4:38200283-38200302 | Msa0162020:CDS | 35.0% | |
| ACAAGAGGAAAATTCTACAG+GGG | + | chr1_4:38200285-38200304 | Msa0162020:CDS | 35.0% | |
| GGATATCTTGCAGTTATTAG+AGG | + | chr1_4:38200361-38200380 | Msa0162020:CDS | 35.0% | |
| !! | TTGCAGTTATTAGAGGCATT+AGG | + | chr1_4:38200368-38200387 | Msa0162020:CDS | 35.0% |
| !!! | GGTGTGATTTTTTGTTATGC+TGG | + | chr1_4:38200435-38200454 | Msa0162020:intron | 35.0% |
| TCTCACACAAAACAGCTTAT+TGG | + | chr1_4:38200735-38200754 | Msa0162020:intron | 35.0% | |
| ACACAAAACAGCTTATTGGA+TGG | + | chr1_4:38200739-38200758 | Msa0162020:intron | 35.0% | |
| AAAACAGCTTATTGGATGGA+AGG | + | chr1_4:38200743-38200762 | Msa0162020:intron | 35.0% | |
| ! | TTCAAGCTTTTGATACCTAC+AGG | - | chr1_4:38200795-38200814 | None:intergenic | 35.0% |
| TTCCATCTGTGAACTTTACA+AGG | + | chr1_4:38200845-38200864 | Msa0162020:CDS | 35.0% | |
| TTCCTTGTAAAGTTCACAGA+TGG | - | chr1_4:38200850-38200869 | None:intergenic | 35.0% | |
| CAAGTGTTCAGAAAGAGTTA+AGG | + | chr1_4:38200931-38200950 | Msa0162020:CDS | 35.0% | |
| CTTCATAAGACAGTAACACT+TGG | - | chr1_4:38201020-38201039 | None:intergenic | 35.0% | |
| AAAAAGGGAAATGTTAACGG+GGG | + | chr1_4:38201053-38201072 | Msa0162020:intron | 35.0% | |
| AGTGCTAGAGGTAACAATCA+AGG | + | chr1_4:38196094-38196113 | Msa0162020:five_prime_UTR | 40.0% | |
| !! | CTTTGGCTCTAGTCTATTTG+TGG | + | chr1_4:38196136-38196155 | Msa0162020:five_prime_UTR | 40.0% |
| AATACCTTGCTCCATCTTGT+TGG | - | chr1_4:38196190-38196209 | None:intergenic | 40.0% | |
| GAAAAGTTCTCCCACTATGT+TGG | + | chr1_4:38196463-38196482 | Msa0162020:CDS | 40.0% | |
| TGATAGCCTCAAAACTCAAG+TGG | + | chr1_4:38196635-38196654 | Msa0162020:intron | 40.0% | |
| ! | AAATCAACTGTGTTGGTCCT+AGG | + | chr1_4:38197175-38197194 | Msa0162020:intron | 40.0% |
| ! | AATCAACTGTGTTGGTCCTA+GGG | + | chr1_4:38197176-38197195 | Msa0162020:intron | 40.0% |
| AAAAATAGCAGGACAGGTAG+CGG | + | chr1_4:38198375-38198394 | Msa0162020:intron | 40.0% | |
| AGGTCATTCTTTACTAGGGA+TGG | - | chr1_4:38198434-38198453 | None:intergenic | 40.0% | |
| GTTGCCATATACTAGTAGGT+AGG | + | chr1_4:38198479-38198498 | Msa0162020:intron | 40.0% | |
| AGGATTTGAAGATGCAAGTG+AGG | + | chr1_4:38198641-38198660 | Msa0162020:CDS | 40.0% | |
| GATGCTTTGATCACATCCTT+TGG | - | chr1_4:38198709-38198728 | None:intergenic | 40.0% | |
| TGCTGTATACGTTCACATAC+AGG | + | chr1_4:38199208-38199227 | Msa0162020:intron | 40.0% | |
| CGTTCACATACAGGAAACAA+AGG | + | chr1_4:38199217-38199236 | Msa0162020:intron | 40.0% | |
| GAGAGTAACCAAGAATCTGA+AGG | + | chr1_4:38199245-38199264 | Msa0162020:CDS | 40.0% | |
| TCTTGTCACCTTCAGATTCT+TGG | - | chr1_4:38199256-38199275 | None:intergenic | 40.0% | |
| !! | GACAAGAGTGTTCTCTACTT+TGG | + | chr1_4:38199269-38199288 | Msa0162020:CDS | 40.0% |
| ! | GAGTCCAGTTCTAATGTTCA+TGG | + | chr1_4:38199368-38199387 | Msa0162020:CDS | 40.0% |
| AAACCTGCGAGAGTAGAATT+AGG | - | chr1_4:38199461-38199480 | None:intergenic | 40.0% | |
| ATCAATCCAACTATGAGGTG+CGG | + | chr1_4:38199598-38199617 | Msa0162020:intron | 40.0% | |
| TCCAAACGCGTGTCATAAAT+AGG | + | chr1_4:38199640-38199659 | Msa0162020:intron | 40.0% | |
| TCCTATTTATGACACGCGTT+TGG | - | chr1_4:38199644-38199663 | None:intergenic | 40.0% | |
| TTTGCAAGACTCATGCATAC+AGG | - | chr1_4:38199672-38199691 | None:intergenic | 40.0% | |
| ACAAAGTAAGCAGGCATGTA+TGG | - | chr1_4:38199765-38199784 | None:intergenic | 40.0% | |
| GCTCTTACTACAAAGTAAGC+AGG | - | chr1_4:38199774-38199793 | None:intergenic | 40.0% | |
| !!! | ATGGCTTTGGCAGATCATTT+TGG | + | chr1_4:38199820-38199839 | Msa0162020:intron | 40.0% |
| ! | TGTTGAGGCAGATGCTTTTA+AGG | + | chr1_4:38199869-38199888 | Msa0162020:CDS | 40.0% |
| CATGCTTCAAACTGCTGAAT+TGG | + | chr1_4:38199941-38199960 | Msa0162020:CDS | 40.0% | |
| GACAAAAGGTTCCCATGATA+AGG | - | chr1_4:38200131-38200150 | None:intergenic | 40.0% | |
| GGTAGGATATAAAGTAGCTG+CGG | + | chr1_4:38200204-38200223 | Msa0162020:CDS | 40.0% | |
| TCTTCTTCTGCTTCATTCAC+TGG | - | chr1_4:38200259-38200278 | None:intergenic | 40.0% | |
| CCAACTAGCTCAATTCTGTA+AGG | - | chr1_4:38200328-38200347 | None:intergenic | 40.0% | |
| CCTTACAGAATTGAGCTAGT+TGG | + | chr1_4:38200325-38200344 | Msa0162020:CDS | 40.0% | |
| AACAGGAGAGCTATTATGAC+AGG | + | chr1_4:38200487-38200506 | Msa0162020:intron | 40.0% | |
| GAGAGCTATTATGACAGGAA+GGG | + | chr1_4:38200492-38200511 | Msa0162020:CDS | 40.0% | |
| CTCTATTGCACAGATGCTAT+TGG | + | chr1_4:38200601-38200620 | Msa0162020:CDS | 40.0% | |
| TATTGCACAGATGCTATTGG+TGG | + | chr1_4:38200604-38200623 | Msa0162020:CDS | 40.0% | |
| !!! | GTTGCTCCTGTTTTTACCTT+CGG | - | chr1_4:38200634-38200653 | None:intergenic | 40.0% |
| AATCTACTAGAGGATCCTGT+AGG | + | chr1_4:38200777-38200796 | Msa0162020:CDS | 40.0% | |
| ACTTTGTTCTGTCACCTTCA+AGG | + | chr1_4:38200907-38200926 | Msa0162020:CDS | 40.0% | |
| TTCTGAACACTTGACCTTGA+AGG | - | chr1_4:38200924-38200943 | None:intergenic | 40.0% | |
| AAGACAGTAACACTTGGTTC+TGG | - | chr1_4:38201014-38201033 | None:intergenic | 40.0% | |
| CCTCTAGCACTCAAATCAAG+TGG | - | chr1_4:38196085-38196104 | None:intergenic | 45.0% | |
| ! | CCACTTGATTTGAGTGCTAG+AGG | + | chr1_4:38196082-38196101 | Msa0162020:five_prime_UTR | 45.0% |
| GTCAGCTACAGCTTCTTCTT+TGG | + | chr1_4:38196119-38196138 | Msa0162020:five_prime_UTR | 45.0% | |
| ATCTCCAACAAGATGGAGCA+AGG | + | chr1_4:38196183-38196202 | Msa0162020:exon | 45.0% | |
| GCTTGTGTGTTTGTGTGTGT+TGG | + | chr1_4:38198605-38198624 | Msa0162020:intron | 45.0% | |
| TGGGCAAGTATGCATAACTC+TGG | - | chr1_4:38198669-38198688 | None:intergenic | 45.0% | |
| TAAAGAAGTCATGGTCCCCA+TGG | + | chr1_4:38199332-38199351 | Msa0162020:CDS | 45.0% | |
| CCACCCATGAACATTAGAAC+TGG | - | chr1_4:38199375-38199394 | None:intergenic | 45.0% | |
| ! | CCAGTTCTAATGTTCATGGG+TGG | + | chr1_4:38199372-38199391 | Msa0162020:CDS | 45.0% |
| GTTCTAATGTTCATGGGTGG+TGG | + | chr1_4:38199375-38199394 | Msa0162020:CDS | 45.0% | |
| CTGCGAGAGTAGAATTAGGA+TGG | - | chr1_4:38199457-38199476 | None:intergenic | 45.0% | |
| CATCCTAATTCTACTCTCGC+AGG | + | chr1_4:38199455-38199474 | Msa0162020:intron | 45.0% | |
| ACGCACCTCAATTCGATTGT+TGG | + | chr1_4:38199553-38199572 | Msa0162020:intron | 45.0% | |
| CAAGACTCATGCATACAGGA+TGG | - | chr1_4:38199668-38199687 | None:intergenic | 45.0% | |
| TTGGTTAGGAGCAGCTTCAA+AGG | + | chr1_4:38199839-38199858 | Msa0162020:CDS | 45.0% | |
| TTCAAAGGCTGTGGTTGTTG+AGG | + | chr1_4:38199854-38199873 | Msa0162020:CDS | 45.0% | |
| ATGGTGACCCCTAGAGTTAA+GGG | - | chr1_4:38199916-38199935 | None:intergenic | 45.0% | |
| ! | CAGTTTGAAGCATGTCAGCA+TGG | - | chr1_4:38199935-38199954 | None:intergenic | 45.0% |
| !! | TGCATGAAGGTGTTCGTGTT+CGG | - | chr1_4:38199978-38199997 | None:intergenic | 45.0% |
| TAGAGATGATGCAGCATCAG+TGG | - | chr1_4:38200062-38200081 | None:intergenic | 45.0% | |
| TGCTGCATCATCTCTACTAG+TGG | + | chr1_4:38200066-38200085 | Msa0162020:CDS | 45.0% | |
| TGCATCATCTCTACTAGTGG+CGG | + | chr1_4:38200069-38200088 | Msa0162020:CDS | 45.0% | |
| !! | TAGTGGCGGCTCTAAACAAA+GGG | + | chr1_4:38200083-38200102 | Msa0162020:CDS | 45.0% |
| TCATGGACGGTACCTTATCA+TGG | + | chr1_4:38200116-38200135 | Msa0162020:CDS | 45.0% | |
| CATGGACGGTACCTTATCAT+GGG | + | chr1_4:38200117-38200136 | Msa0162020:CDS | 45.0% | |
| GCAATAGTCTGCTCGACAAA+AGG | - | chr1_4:38200145-38200164 | None:intergenic | 45.0% | |
| TGTCGAGCAGACTATTGCTA+TGG | + | chr1_4:38200147-38200166 | Msa0162020:CDS | 45.0% | |
| CATAAGTACAGAATGGGGGT+AGG | + | chr1_4:38200187-38200206 | Msa0162020:CDS | 45.0% | |
| GGATATAAAGTAGCTGCGGA+TGG | + | chr1_4:38200208-38200227 | Msa0162020:CDS | 45.0% | |
| ! | CAGAATTGAGCTAGTTGGTG+TGG | + | chr1_4:38200330-38200349 | Msa0162020:CDS | 45.0% |
| ! | CTAGTTGGTGTGGTTTGTGA+TGG | + | chr1_4:38200340-38200359 | Msa0162020:CDS | 45.0% |
| GGAGAGCTATTATGACAGGA+AGG | + | chr1_4:38200491-38200510 | Msa0162020:intron | 45.0% | |
| !! | GCAAACTTGTTGACAGTGCT+AGG | + | chr1_4:38200578-38200597 | Msa0162020:CDS | 45.0% |
| ACAGCTTATTGGATGGAAGG+AGG | + | chr1_4:38200746-38200765 | Msa0162020:intron | 45.0% | |
| CAGCTTATTGGATGGAAGGA+GGG | + | chr1_4:38200747-38200766 | Msa0162020:intron | 45.0% | |
| GGGTGATCACAATCTACTAG+AGG | + | chr1_4:38200767-38200786 | Msa0162020:CDS | 45.0% | |
| !! | CAATGGAACCTGGTTCTGTT+TGG | + | chr1_4:38200880-38200899 | Msa0162020:CDS | 45.0% |
| AAGTCCTTCCAAACAGAACC+AGG | - | chr1_4:38200891-38200910 | None:intergenic | 45.0% | |
| !!! | AATCATTTAATTTTTTTTTT+TGG | + | chr1_4:38197815-38197834 | Msa0162020:intron | 5.0% |
| !!! | ATCATTTAATTTTTTTTTTT+GGG | + | chr1_4:38197816-38197835 | Msa0162020:intron | 5.0% |
| !! | AAAAAATAAAAATGAATAAA+TGG | - | chr1_4:38198867-38198886 | None:intergenic | 5.0% |
| !!! | ACATTTATTTATTTTTAAAT+AGG | + | chr1_4:38199158-38199177 | Msa0162020:intron | 5.0% |
| !!! | TAAACAATATTTTTTTTTAT+GGG | - | chr1_4:38201094-38201113 | None:intergenic | 5.0% |
| !!! | ATAAACAATATTTTTTTTTA+TGG | - | chr1_4:38201095-38201114 | None:intergenic | 5.0% |
| TTACCGGAAGCAAGAGTCGA+CGG | + | chr1_4:38196375-38196394 | Msa0162020:CDS | 50.0% | |
| TGGGGCATGAGTTCAACTCT+CGG | + | chr1_4:38196820-38196839 | Msa0162020:intron | 50.0% | |
| TTGGTCCTAGGGATTGCGTT+CGG | + | chr1_4:38197187-38197206 | Msa0162020:intron | 50.0% | |
| ! | GTTTGTGTGTGTTGGCAGCT+AGG | + | chr1_4:38198613-38198632 | Msa0162020:intron | 50.0% |
| ! | GTGTTGGCAGCTAGGCAAAT+AGG | + | chr1_4:38198621-38198640 | Msa0162020:intron | 50.0% |
| AACTGGACTCCTCTCACTGA+GGG | - | chr1_4:38199358-38199377 | None:intergenic | 50.0% | |
| ! | AATGTTCATGGGTGGTGGCA+TGG | + | chr1_4:38199380-38199399 | Msa0162020:CDS | 50.0% |
| ! | ATGTTCATGGGTGGTGGCAT+GGG | + | chr1_4:38199381-38199400 | Msa0162020:CDS | 50.0% |
| CATGGTGACCCCTAGAGTTA+AGG | - | chr1_4:38199917-38199936 | None:intergenic | 50.0% | |
| !! | CTAGTGGCGGCTCTAAACAA+AGG | + | chr1_4:38200082-38200101 | Msa0162020:CDS | 50.0% |
| CAAAGGGCGAGATGTGATCA+TGG | + | chr1_4:38200099-38200118 | Msa0162020:CDS | 50.0% | |
| TTATGACAGGAAGGGCAGTG+AGG | + | chr1_4:38200500-38200519 | Msa0162020:CDS | 50.0% | |
| TATGACAGGAAGGGCAGTGA+GGG | + | chr1_4:38200501-38200520 | Msa0162020:CDS | 50.0% | |
| GGTCCACCGAAGGTAAAAAC+AGG | + | chr1_4:38200625-38200644 | Msa0162020:intron | 50.0% | |
| !!! | GCTCCTGTTTTTACCTTCGG+TGG | - | chr1_4:38200631-38200650 | None:intergenic | 50.0% |
| CAGAACCAGGTTCCATTGCT+GGG | - | chr1_4:38200878-38200897 | None:intergenic | 50.0% | |
| ACAGAACCAGGTTCCATTGC+TGG | - | chr1_4:38200879-38200898 | None:intergenic | 50.0% | |
| !! | GGAACCTGGTTCTGTTTGGA+AGG | + | chr1_4:38200884-38200903 | Msa0162020:CDS | 50.0% |
| ! | GGTTCTGGCAGCAGCAATAT+TGG | - | chr1_4:38200999-38201018 | None:intergenic | 50.0% |
| CAGAACATGTGTGAGGCGGA+CGG | - | chr1_4:38196311-38196330 | None:intergenic | 55.0% | |
| CAGCCAGAACATGTGTGAGG+CGG | - | chr1_4:38196315-38196334 | None:intergenic | 55.0% | |
| AGGCAGCCAGAACATGTGTG+AGG | - | chr1_4:38196318-38196337 | None:intergenic | 55.0% | |
| GGCAATCAAACCGGCAAAGG+AGG | - | chr1_4:38196338-38196357 | None:intergenic | 55.0% | |
| !! | CTTTGCCGGTTTGATTGCCG+CGG | + | chr1_4:38196339-38196358 | Msa0162020:CDS | 55.0% |
| TGGTCCTAGGGATTGCGTTC+GGG | + | chr1_4:38197188-38197207 | Msa0162020:intron | 55.0% | |
| TTGACCCGAACGCAATCCCT+AGG | - | chr1_4:38197195-38197214 | None:intergenic | 55.0% | |
| GGATTGCGTTCGGGTCAAGT+TGG | + | chr1_4:38197197-38197216 | Msa0162020:intron | 55.0% | |
| GAACTGGACTCCTCTCACTG+AGG | - | chr1_4:38199359-38199378 | None:intergenic | 55.0% | |
| ATCCAACTATGAGGTGCGGC+TGG | + | chr1_4:38199602-38199621 | Msa0162020:intron | 55.0% | |
| AGGAGCAGCTTCAAAGGCTG+TGG | + | chr1_4:38199845-38199864 | Msa0162020:CDS | 55.0% | |
| GGGCGAGATGTGATCATGGA+CGG | + | chr1_4:38200103-38200122 | Msa0162020:CDS | 55.0% | |
| ! | TGCTATTGGTGGTCCACCGA+AGG | + | chr1_4:38200615-38200634 | Msa0162020:CDS | 55.0% |
| CAAGGAACCTAGCCCAGCAA+TGG | + | chr1_4:38200863-38200882 | Msa0162020:CDS | 55.0% | |
| CGTCCGCCTCACACATGTTC+TGG | + | chr1_4:38196309-38196328 | Msa0162020:CDS | 60.0% | |
| ! | GTTCTGGCTGCCTCCTTTGC+CGG | + | chr1_4:38196325-38196344 | Msa0162020:CDS | 60.0% |
| CGCGGCAATCAAACCGGCAA+AGG | - | chr1_4:38196341-38196360 | None:intergenic | 60.0% | |
| AGCAGCCGCGGCAATCAAAC+CGG | - | chr1_4:38196347-38196366 | None:intergenic | 60.0% | |
| CTCTTGCTTCCGGTAACGCG+AGG | - | chr1_4:38196371-38196390 | None:intergenic | 60.0% | |
| !! | CCACCGTCGACTCTTGCTTC+CGG | - | chr1_4:38196381-38196400 | None:intergenic | 60.0% |
| TCCTCTCACTGAGGGCCATG+GGG | - | chr1_4:38199350-38199369 | None:intergenic | 60.0% | |
| CTCCTCTCACTGAGGGCCAT+GGG | - | chr1_4:38199351-38199370 | None:intergenic | 60.0% | |
| ACTCCTCTCACTGAGGGCCA+TGG | - | chr1_4:38199352-38199371 | None:intergenic | 60.0% | |
| CTCCAGCCGCACCTCATAGT+TGG | - | chr1_4:38199607-38199626 | None:intergenic | 60.0% | |
| CCAGGTTCCATTGCTGGGCT+AGG | - | chr1_4:38200873-38200892 | None:intergenic | 60.0% | |
| CCTAGCCCAGCAATGGAACC+TGG | + | chr1_4:38200870-38200889 | Msa0162020:CDS | 60.0% | |
| CCGGAAGCAAGAGTCGACGG+TGG | + | chr1_4:38196378-38196397 | Msa0162020:CDS | 65.0% | |
| TCCCCATGGCCCTCAGTGAG+AGG | + | chr1_4:38199346-38199365 | Msa0162020:CDS | 65.0% | |
| ! | ATGGGTGGTGGCATGGGAGC+AGG | + | chr1_4:38199387-38199406 | Msa0162020:CDS | 65.0% |
| GTAACGCGAGGCAGCAGCCG+CGG | - | chr1_4:38196359-38196378 | None:intergenic | 70.0% | |
| CGGCTGCTGCCTCGCGTTAC+CGG | + | chr1_4:38196359-38196378 | Msa0162020:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 38195994 | 38201205 | 38195994 | ID=Msa0162020;Name=Msa0162020 |
| chr1_4 | mRNA | 38195994 | 38201205 | 38195994 | ID=Msa0162020-mRNA-1;Parent=Msa0162020;Name=Msa0162020-mRNA-1;_AED=0.12;_eAED=0.12;_QI=201|1|1|1|0.88|0.8|10|164|521 |
| chr1_4 | exon | 38195994 | 38196204 | 38195994 | ID=Msa0162020-mRNA-1:exon:11200;Parent=Msa0162020-mRNA-1 |
| chr1_4 | exon | 38196293 | 38196484 | 38196293 | ID=Msa0162020-mRNA-1:exon:11201;Parent=Msa0162020-mRNA-1 |
| chr1_4 | exon | 38198631 | 38198854 | 38198631 | ID=Msa0162020-mRNA-1:exon:11202;Parent=Msa0162020-mRNA-1 |
| chr1_4 | exon | 38198954 | 38199015 | 38198954 | ID=Msa0162020-mRNA-1:exon:11203;Parent=Msa0162020-mRNA-1 |
| chr1_4 | exon | 38199230 | 38199442 | 38199230 | ID=Msa0162020-mRNA-1:exon:11204;Parent=Msa0162020-mRNA-1 |
| chr1_4 | exon | 38199833 | 38199962 | 38199833 | ID=Msa0162020-mRNA-1:exon:11205;Parent=Msa0162020-mRNA-1 |
| chr1_4 | exon | 38200046 | 38200389 | 38200046 | ID=Msa0162020-mRNA-1:exon:11206;Parent=Msa0162020-mRNA-1 |
| chr1_4 | exon | 38200492 | 38200636 | 38200492 | ID=Msa0162020-mRNA-1:exon:11207;Parent=Msa0162020-mRNA-1 |
| chr1_4 | exon | 38200750 | 38201053 | 38200750 | ID=Msa0162020-mRNA-1:exon:11208;Parent=Msa0162020-mRNA-1 |
| chr1_4 | exon | 38201100 | 38201205 | 38201100 | ID=Msa0162020-mRNA-1:exon:11209;Parent=Msa0162020-mRNA-1 |
| chr1_4 | five_prime_UTR | 38195994 | 38196194 | 38195994 | ID=Msa0162020-mRNA-1:five_prime_utr;Parent=Msa0162020-mRNA-1 |
| chr1_4 | CDS | 38196195 | 38196204 | 38196195 | ID=Msa0162020-mRNA-1:cds;Parent=Msa0162020-mRNA-1 |
| chr1_4 | CDS | 38196293 | 38196484 | 38196293 | ID=Msa0162020-mRNA-1:cds;Parent=Msa0162020-mRNA-1 |
| chr1_4 | CDS | 38198631 | 38198854 | 38198631 | ID=Msa0162020-mRNA-1:cds;Parent=Msa0162020-mRNA-1 |
| chr1_4 | CDS | 38198954 | 38199015 | 38198954 | ID=Msa0162020-mRNA-1:cds;Parent=Msa0162020-mRNA-1 |
| chr1_4 | CDS | 38199230 | 38199442 | 38199230 | ID=Msa0162020-mRNA-1:cds;Parent=Msa0162020-mRNA-1 |
| chr1_4 | CDS | 38199833 | 38199962 | 38199833 | ID=Msa0162020-mRNA-1:cds;Parent=Msa0162020-mRNA-1 |
| chr1_4 | CDS | 38200046 | 38200389 | 38200046 | ID=Msa0162020-mRNA-1:cds;Parent=Msa0162020-mRNA-1 |
| chr1_4 | CDS | 38200492 | 38200636 | 38200492 | ID=Msa0162020-mRNA-1:cds;Parent=Msa0162020-mRNA-1 |
| chr1_4 | CDS | 38200750 | 38200995 | 38200750 | ID=Msa0162020-mRNA-1:cds;Parent=Msa0162020-mRNA-1 |
| chr1_4 | three_prime_UTR | 38200996 | 38201053 | 38200996 | ID=Msa0162020-mRNA-1:three_prime_utr;Parent=Msa0162020-mRNA-1 |
| chr1_4 | three_prime_UTR | 38201100 | 38201205 | 38201100 | ID=Msa0162020-mRNA-1:three_prime_utr;Parent=Msa0162020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
