Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162090 | XP_003590783.1 | 95.815 | 454 | 18 | 1 | 14 | 467 | 68 | 520 | 0.0 | 903 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162090 | sp|Q0WUY1|NADKC_ARATH | 66.004 | 453 | 144 | 3 | 14 | 463 | 85 | 530 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162090 | G7I3Y0 | 95.815 | 454 | 18 | 1 | 14 | 467 | 68 | 520 | 0.0 | 903 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006850 | Msa0162090 | -0.807205 | 5.662745e-50 | -8.615850e-47 |
| Msa0162020 | Msa0162090 | 0.972854 | 1.885793e-135 | -8.615850e-47 |
| Msa0162060 | Msa0162090 | 0.960933 | 4.042472e-119 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162090 | MtrunA17_Chr1g0187021 | 95.815 | 454 | 18 | 1 | 14 | 467 | 68 | 520 | 0.0 | 903 |
| Msa0162090 | MtrunA17_Chr1g0187051 | 80.795 | 453 | 72 | 2 | 14 | 466 | 67 | 504 | 0.0 | 753 |
| Msa0162090 | MtrunA17_Chr1g0187071 | 73.068 | 453 | 119 | 3 | 14 | 466 | 69 | 518 | 0.0 | 640 |
| Msa0162090 | MtrunA17_Chr1g0184551 | 65.208 | 457 | 143 | 5 | 14 | 462 | 63 | 511 | 0.0 | 606 |
| Msa0162090 | MtrunA17_Chr7g0260781 | 68.785 | 362 | 102 | 4 | 104 | 462 | 17 | 370 | 1.51e-165 | 471 |
| Msa0162090 | MtrunA17_Chr7g0260791 | 55.102 | 98 | 43 | 1 | 13 | 109 | 76 | 173 | 3.38e-29 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162090 | AT1G06750.3 | 65.708 | 452 | 142 | 5 | 14 | 462 | 66 | 507 | 0.0 | 580 |
| Msa0162090 | AT1G06750.1 | 65.708 | 452 | 142 | 5 | 14 | 462 | 66 | 507 | 0.0 | 580 |
| Msa0162090 | AT1G06750.2 | 65.708 | 452 | 142 | 5 | 14 | 462 | 73 | 514 | 0.0 | 580 |
| Msa0162090 | AT2G30630.1 | 64.967 | 451 | 145 | 5 | 15 | 462 | 81 | 521 | 0.0 | 573 |
| Msa0162090 | AT1G04280.2 | 66.004 | 453 | 144 | 3 | 14 | 463 | 31 | 476 | 0.0 | 573 |
| Msa0162090 | AT1G04280.1 | 66.004 | 453 | 144 | 3 | 14 | 463 | 85 | 530 | 0.0 | 573 |
| Msa0162090 | AT2G30630.2 | 62.288 | 472 | 144 | 6 | 15 | 462 | 81 | 542 | 0.0 | 562 |
| Msa0162090 | AT2G30630.3 | 64.526 | 327 | 103 | 5 | 15 | 338 | 81 | 397 | 1.85e-138 | 404 |
Find 111 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACAAGTTTGCAATATTT+TGG | 0.119289 | 1_4:+38244201 | None:intergenic |
| TCTCACACAAAACAGCTTAT+TGG | 0.201668 | 1_4:-38244036 | Msa0162090:intron |
| ATGGCTTTGGCAGATCATTT+TGG | 0.259344 | 1_4:-38244949 | Msa0162090:intron |
| TCTTGTCACCTTCAGATTCT+TGG | 0.267503 | 1_4:+38245516 | None:intergenic |
| TGAATCTCTCTATGTCAAAT+TGG | 0.306179 | 1_4:-38246008 | Msa0162090:CDS |
| CAAAGCATCTTTGAATATCT+TGG | 0.313200 | 1_4:-38246046 | Msa0162090:CDS |
| TCTTCTTCTGCTTCATTCAC+TGG | 0.342257 | 1_4:+38244513 | None:intergenic |
| GATGCTTTGATCACATCCTT+TGG | 0.362853 | 1_4:+38246060 | None:intergenic |
| CATGCTTCAAACTGCTGAAT+TGG | 0.363240 | 1_4:-38244828 | Msa0162090:intron |
| CAATGGAACCTGGTTCTGTT+TGG | 0.366252 | 1_4:-38243891 | Msa0162090:CDS |
| GTACAATTAATGAAAATTAC+TGG | 0.366745 | 1_4:-38244539 | Msa0162090:CDS |
| ACAGAACCAGGTTCCATTGC+TGG | 0.377964 | 1_4:+38243895 | None:intergenic |
| TTCTGAACACTTGACCTTGA+AGG | 0.379470 | 1_4:+38243850 | None:intergenic |
| CATGGTGACCCCTAGAGTTA+AGG | 0.381657 | 1_4:+38244855 | None:intergenic |
| AGCTCCATTTGTTATTAGTC+AGG | 0.384574 | 1_4:-38245933 | Msa0162090:intron |
| CTCCTCTCACTGAGGGCCAT+GGG | 0.393070 | 1_4:+38245421 | None:intergenic |
| GAAGAGATGAAAGTAATAAA+TGG | 0.394683 | 1_4:-38245475 | Msa0162090:CDS |
| CACAAACATAAGTACAGAAT+GGG | 0.394745 | 1_4:-38244588 | Msa0162090:CDS |
| ACTCCTCTCACTGAGGGCCA+TGG | 0.405385 | 1_4:+38245420 | None:intergenic |
| GGATATCTTGCAGTTATTAG+AGG | 0.406489 | 1_4:-38244408 | Msa0162090:CDS |
| TTGCAGTTATTAGAGGCATT+AGG | 0.422529 | 1_4:-38244401 | Msa0162090:intron |
| CCAGGTTCCATTGCTGGGCT+AGG | 0.437394 | 1_4:+38243901 | None:intergenic |
| ATGTTCATGGGTGGTGGCAT+GGG | 0.437437 | 1_4:-38245388 | Msa0162090:CDS |
| TGAATATCTTGGCAATGAAA+AGG | 0.438416 | 1_4:-38246035 | Msa0162090:CDS |
| ATGGGTGGTGGCATGGGAGC+AGG | 0.440674 | 1_4:-38245382 | Msa0162090:CDS |
| CAACAAGAGGAAAATTCTAC+AGG | 0.441415 | 1_4:-38244486 | Msa0162090:CDS |
| AATGTTCATGGGTGGTGGCA+TGG | 0.442939 | 1_4:-38245389 | Msa0162090:CDS |
| CAAGTGTTCAGAAAGAGTTA+AGG | 0.445444 | 1_4:-38243840 | Msa0162090:CDS |
| CTCTATTGCACAGATGCTAT+TGG | 0.445603 | 1_4:-38244168 | Msa0162090:CDS |
| ATGGTGACCCCTAGAGTTAA+GGG | 0.446844 | 1_4:+38244856 | None:intergenic |
| GTGTTGGCAGCTAGGCAAAT+AGG | 0.451665 | 1_4:-38246145 | Msa0162090:CDS |
| TATATAAAGCCCTTAACTCT+AGG | 0.453952 | 1_4:-38244865 | Msa0162090:CDS |
| GAAGCTGAAAGAAATTCTAT+TGG | 0.458873 | 1_4:-38245784 | Msa0162090:CDS |
| TTCCATCTGTGAACTTTACA+AGG | 0.465735 | 1_4:-38243926 | Msa0162090:CDS |
| GCTTGTGTGTTTGTGTGTGT+TGG | 0.467712 | 1_4:-38246161 | Msa0162090:CDS |
| TGAACCTGACTAATAACAAA+TGG | 0.468847 | 1_4:+38245929 | None:intergenic |
| GTTTGTGTGTGTTGGCAGCT+AGG | 0.476677 | 1_4:-38246153 | Msa0162090:CDS |
| CCACCCATGAACATTAGAAC+TGG | 0.479997 | 1_4:+38245397 | None:intergenic |
| ATATAAAGCCCTTAACTCTA+GGG | 0.487320 | 1_4:-38244864 | Msa0162090:CDS |
| GCAATAGTCTGCTCGACAAA+AGG | 0.487335 | 1_4:+38244627 | None:intergenic |
| AAGTGTTCAGAAAGAGTTAA+GGG | 0.487553 | 1_4:-38243839 | Msa0162090:CDS |
| GACAAAAGGTTCCCATGATA+AGG | 0.487948 | 1_4:+38244641 | None:intergenic |
| GAGTCCAGTTCTAATGTTCA+TGG | 0.488035 | 1_4:-38245401 | Msa0162090:CDS |
| GACAAGAGTGTTCTCTACTT+TGG | 0.492501 | 1_4:-38245500 | Msa0162090:CDS |
| TGGTTCTGGCAGCAGCATAT+TGG | 0.503979 | 1_4:+38243775 | None:intergenic |
| AACAGGAGAGCTATTATGAC+AGG | 0.506463 | 1_4:-38244282 | Msa0162090:intron |
| TCATGGACGGTACCTTATCA+TGG | 0.507812 | 1_4:-38244653 | Msa0162090:CDS |
| GCAAACTTGTTGACAGTGCT+AGG | 0.509508 | 1_4:-38244191 | Msa0162090:CDS |
| AAGACAGTAACACTTGGTTC+TGG | 0.512285 | 1_4:+38243761 | None:intergenic |
| GTTCTAATGTTCATGGGTGG+TGG | 0.513078 | 1_4:-38245394 | Msa0162090:CDS |
| CTAGTTGGTGTGGTTTGTGA+TGG | 0.513280 | 1_4:-38244429 | Msa0162090:CDS |
| TCACAAACATAAGTACAGAA+TGG | 0.515042 | 1_4:-38244589 | Msa0162090:CDS |
| CCTAGCCCAGCAATGGAACC+TGG | 0.516557 | 1_4:-38243901 | Msa0162090:CDS |
| GGAACCTGGTTCTGTTTGGA+AGG | 0.517649 | 1_4:-38243887 | Msa0162090:CDS |
| TCCTCTCACTGAGGGCCATG+GGG | 0.524414 | 1_4:+38245422 | None:intergenic |
| CCAACTAGCTCAATTCTGTA+AGG | 0.525410 | 1_4:+38244444 | None:intergenic |
| CCTTACAGAATTGAGCTAGT+TGG | 0.526663 | 1_4:-38244444 | Msa0162090:CDS |
| TAGAGATGATGCAGCATCAG+TGG | 0.527175 | 1_4:+38244710 | None:intergenic |
| CAGAATTGAGCTAGTTGGTG+TGG | 0.527716 | 1_4:-38244439 | Msa0162090:CDS |
| AGGAGCAGCTTCAAAGGCTG+TGG | 0.528800 | 1_4:-38244924 | Msa0162090:CDS |
| TTCAAAGGCTGTGGTTGTTG+AGG | 0.529864 | 1_4:-38244915 | Msa0162090:CDS |
| TTCCTTGTAAAGTTCACAGA+TGG | 0.536025 | 1_4:+38243924 | None:intergenic |
| TTGGTTAGGAGCAGCTTCAA+AGG | 0.537556 | 1_4:-38244930 | Msa0162090:CDS |
| TGTCGAGCAGACTATTGCTA+TGG | 0.539450 | 1_4:-38244622 | Msa0162090:CDS |
| TATTGCACAGATGCTATTGG+TGG | 0.547648 | 1_4:-38244165 | Msa0162090:CDS |
| CAGAACCAGGTTCCATTGCT+GGG | 0.554057 | 1_4:+38243896 | None:intergenic |
| ACACAAAACAGCTTATTGGA+TGG | 0.556173 | 1_4:-38244032 | Msa0162090:intron |
| AAATTCTATTGGCAGCTACA+AGG | 0.556844 | 1_4:-38245773 | Msa0162090:intron |
| CAAAGGGCGAGATGTGATCA+TGG | 0.564773 | 1_4:-38244670 | Msa0162090:CDS |
| TCCCCATGGCCCTCAGTGAG+AGG | 0.570944 | 1_4:-38245423 | Msa0162090:CDS |
| TTCACAAACTAAAGAAGTCA+TGG | 0.573532 | 1_4:-38245446 | Msa0162090:CDS |
| TGCTATTGGTGGTCCACCGA+AGG | 0.575982 | 1_4:-38244154 | Msa0162090:intron |
| AAATCCTTCCAAACAGAACC+AGG | 0.577494 | 1_4:+38243883 | None:intergenic |
| TATGACAGGAAGGGCAGTGA+GGG | 0.577678 | 1_4:-38244268 | Msa0162090:CDS |
| GGAGAGCTATTATGACAGGA+AGG | 0.580051 | 1_4:-38244278 | Msa0162090:CDS |
| AGAAGAAGAACATCAACAAG+AGG | 0.581089 | 1_4:-38244499 | Msa0162090:CDS |
| CAAGGAACCTAGCCCAGCAA+TGG | 0.583071 | 1_4:-38243908 | Msa0162090:CDS |
| TACAATTAATGAAAATTACT+GGG | 0.585080 | 1_4:-38244538 | Msa0162090:CDS |
| AACTGGACTCCTCTCACTGA+GGG | 0.586342 | 1_4:+38245414 | None:intergenic |
| CAGCTTATTGGATGGAAGGA+GGG | 0.587320 | 1_4:-38244024 | Msa0162090:CDS |
| AAAACAGCTTATTGGATGGA+AGG | 0.588568 | 1_4:-38244028 | Msa0162090:intron |
| TAGTGGCGGCTCTAAACAAA+GGG | 0.593741 | 1_4:-38244686 | Msa0162090:CDS |
| CTTCATAAGACAGTAACACT+TGG | 0.596432 | 1_4:+38243755 | None:intergenic |
| TGCATCATCTCTACTAGTGG+CGG | 0.597453 | 1_4:-38244700 | Msa0162090:CDS |
| TAAAGAAGTCATGGTCCCCA+TGG | 0.598959 | 1_4:-38245437 | Msa0162090:CDS |
| TGCTGCATCATCTCTACTAG+TGG | 0.599865 | 1_4:-38244703 | Msa0162090:CDS |
| AGTCCAGTTCTAATGTTCAT+GGG | 0.602486 | 1_4:-38245400 | Msa0162090:CDS |
| CATGGACGGTACCTTATCAT+GGG | 0.602582 | 1_4:-38244652 | Msa0162090:CDS |
| AACAAGAGGAAAATTCTACA+GGG | 0.606029 | 1_4:-38244485 | Msa0162090:CDS |
| GAGATGAAAGTAATAAATGG+TGG | 0.609786 | 1_4:-38245472 | Msa0162090:CDS |
| CAGTTTGAAGCATGTCAGCA+TGG | 0.615090 | 1_4:+38244837 | None:intergenic |
| ACAGCTTATTGGATGGAAGG+AGG | 0.616233 | 1_4:-38244025 | Msa0162090:intron |
| TGGGCAAGTATGCATAACTC+TGG | 0.617131 | 1_4:+38246100 | None:intergenic |
| GAGAGCTATTATGACAGGAA+GGG | 0.618202 | 1_4:-38244277 | Msa0162090:CDS |
| GGATATAAAGTAGCTGCGGA+TGG | 0.621827 | 1_4:-38244561 | Msa0162090:CDS |
| TGTTCACATACAGGAAACAA+AGG | 0.629269 | 1_4:-38245552 | Msa0162090:intron |
| GGGCGAGATGTGATCATGGA+CGG | 0.630170 | 1_4:-38244666 | Msa0162090:CDS |
| CTAGTGGCGGCTCTAAACAA+AGG | 0.630500 | 1_4:-38244687 | Msa0162090:CDS |
| AGGATTTGAAGATGCAAGTG+AGG | 0.631153 | 1_4:-38246125 | Msa0162090:CDS |
| GAGAGTAACCAAGAATCTGA+AGG | 0.632638 | 1_4:-38245524 | Msa0162090:CDS |
| AATCTACTAGAGGATCCTGT+AGG | 0.641211 | 1_4:-38243994 | Msa0162090:CDS |
| CCAGTTCTAATGTTCATGGG+TGG | 0.641784 | 1_4:-38245397 | Msa0162090:CDS |
| TATAAAGCCCTTAACTCTAG+GGG | 0.644037 | 1_4:-38244863 | Msa0162090:CDS |
| GGGTGATCACAATCTACTAG+AGG | 0.647681 | 1_4:-38244004 | Msa0162090:CDS |
| AATGAAATGCAAAATAACTG+AGG | 0.656048 | 1_4:+38245963 | None:intergenic |
| ACAAACATAAGTACAGAATG+GGG | 0.664528 | 1_4:-38244587 | Msa0162090:CDS |
| GAACTGGACTCCTCTCACTG+AGG | 0.673724 | 1_4:+38245413 | None:intergenic |
| GGTAGGATATAAAGTAGCTG+CGG | 0.692491 | 1_4:-38244565 | Msa0162090:CDS |
| ACAAGAGGAAAATTCTACAG+GGG | 0.709176 | 1_4:-38244484 | Msa0162090:CDS |
| TTATGACAGGAAGGGCAGTG+AGG | 0.719044 | 1_4:-38244269 | Msa0162090:CDS |
| CAAACATAAGTACAGAATGG+GGG | 0.724586 | 1_4:-38244586 | Msa0162090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTTTTTATTTTTA+TGG | - | chr1_4:38246149-38246168 | Msa0162090:CDS | 0.0% |
| !!! | TTTTTATTTTTTATTTTTAT+GGG | - | chr1_4:38246150-38246169 | Msa0162090:CDS | 0.0% |
| !!! | TATAATGATGTAACATTTTA+AGG | + | chr1_4:38244119-38244138 | None:intergenic | 15.0% |
| !! | TTATGCCTAAATAAATATTA+TGG | - | chr1_4:38244808-38244827 | Msa0162090:intron | 15.0% |
| !! | TACAATTAATGAAAATTACT+GGG | - | chr1_4:38245238-38245257 | Msa0162090:intron | 15.0% |
| !! | ACTATATTAATATACTTTAG+TGG | - | chr1_4:38245421-38245440 | Msa0162090:CDS | 15.0% |
| !!! | TTTTTTATTTTTATGGGTTT+TGG | - | chr1_4:38246156-38246175 | Msa0162090:CDS | 15.0% |
| !! | CAAAGCCATAATATTTATTT+AGG | + | chr1_4:38244816-38244835 | None:intergenic | 20.0% |
| !! | CTAAATAAATATTATGGCTT+TGG | - | chr1_4:38244814-38244833 | Msa0162090:intron | 20.0% |
| !! | GTACAATTAATGAAAATTAC+TGG | - | chr1_4:38245237-38245256 | Msa0162090:intron | 20.0% |
| !!! | TATAGTTAACATTTTCCTTT+TGG | - | chr1_4:38245465-38245484 | Msa0162090:CDS | 20.0% |
| !! | ATGAAGTGATGTATAAAAAA+AGG | - | chr1_4:38246038-38246057 | Msa0162090:CDS | 20.0% |
| !!! | TGTATAAAAAAAGGTGTTAA+CGG | - | chr1_4:38246047-38246066 | Msa0162090:CDS | 20.0% |
| ! | AATGAAATGCAAAATAACTG+AGG | + | chr1_4:38243816-38243835 | None:intergenic | 25.0% |
| !!! | TCAGTTATTTTGCATTTCAT+TGG | - | chr1_4:38243815-38243834 | Msa0162090:CDS | 25.0% |
| ! | TTATAGAGTTAGACAATTCA+AGG | - | chr1_4:38244134-38244153 | Msa0162090:intron | 25.0% |
| ! | GAAGAGATGAAAGTAATAAA+TGG | - | chr1_4:38244301-38244320 | Msa0162090:intron | 25.0% |
| ! | GATTATTTAATGTCTGCATT+TGG | - | chr1_4:38244582-38244601 | Msa0162090:CDS | 25.0% |
| !!! | ATACATGCATTTTTTGTGAA+AGG | - | chr1_4:38244715-38244734 | Msa0162090:CDS | 25.0% |
| ! | TAAACATTTCAAAATCTGAC+AGG | - | chr1_4:38245031-38245050 | Msa0162090:intron | 25.0% |
| !!! | TTTCCTTTTGGAATTTTAAC+AGG | - | chr1_4:38245477-38245496 | Msa0162090:CDS | 25.0% |
| !! | TCAACAAGTTTGCAATATTT+TGG | + | chr1_4:38245578-38245597 | None:intergenic | 25.0% |
| !!! | GTATAAAAAAAGGTGTTAAC+GGG | - | chr1_4:38246048-38246067 | Msa0162090:CDS | 25.0% |
| !!! | TATAAAAAAAGGTGTTAACG+GGG | - | chr1_4:38246049-38246068 | Msa0162090:CDS | 25.0% |
| ! | GGATTTTTGCAGATATTCTT+GGG | + | chr1_4:38243698-38243717 | None:intergenic | 30.0% |
| ! | TGGATTTTTGCAGATATTCT+TGG | + | chr1_4:38243699-38243718 | None:intergenic | 30.0% |
| GAATATCTGCAAAAATCCAA+AGG | - | chr1_4:38243700-38243719 | Msa0162090:intron | 30.0% | |
| ! | CAAAGCATCTTTGAATATCT+TGG | - | chr1_4:38243730-38243749 | Msa0162090:intron | 30.0% |
| TGAATATCTTGGCAATGAAA+AGG | - | chr1_4:38243741-38243760 | Msa0162090:three_prime_UTR | 30.0% | |
| TGAATCTCTCTATGTCAAAT+TGG | - | chr1_4:38243768-38243787 | Msa0162090:three_prime_UTR | 30.0% | |
| TGAACCTGACTAATAACAAA+TGG | + | chr1_4:38243850-38243869 | None:intergenic | 30.0% | |
| ACATACTCAATACTTAACTG+AGG | + | chr1_4:38243922-38243941 | None:intergenic | 30.0% | |
| GTATTGAGTATGTCTTTCTT+CGG | - | chr1_4:38243929-38243948 | Msa0162090:CDS | 30.0% | |
| GAAGCTGAAAGAAATTCTAT+TGG | - | chr1_4:38243992-38244011 | Msa0162090:CDS | 30.0% | |
| GAGATGAAAGTAATAAATGG+TGG | - | chr1_4:38244304-38244323 | Msa0162090:intron | 30.0% | |
| TTCACAAACTAAAGAAGTCA+TGG | - | chr1_4:38244330-38244349 | Msa0162090:intron | 30.0% | |
| ATAATCCAACAATCGAATTG+AGG | + | chr1_4:38244568-38244587 | None:intergenic | 30.0% | |
| TATATAAAGCCCTTAACTCT+AGG | - | chr1_4:38244911-38244930 | Msa0162090:CDS | 30.0% | |
| ATATAAAGCCCTTAACTCTA+GGG | - | chr1_4:38244912-38244931 | Msa0162090:CDS | 30.0% | |
| TCACAAACATAAGTACAGAA+TGG | - | chr1_4:38245187-38245206 | Msa0162090:intron | 30.0% | |
| CACAAACATAAGTACAGAAT+GGG | - | chr1_4:38245188-38245207 | Msa0162090:intron | 30.0% | |
| ACAAACATAAGTACAGAATG+GGG | - | chr1_4:38245189-38245208 | Msa0162090:intron | 30.0% | |
| AACAAGAGGAAAATTCTACA+GGG | - | chr1_4:38245291-38245310 | Msa0162090:intron | 30.0% | |
| ATTAGGTGTATATATGCTTG+TGG | - | chr1_4:38245392-38245411 | Msa0162090:CDS | 30.0% | |
| TCTCCTGTTAAAATTCCAAA+AGG | + | chr1_4:38245483-38245502 | None:intergenic | 30.0% | |
| TGTAAAATCAAACACAAGCA+AGG | + | chr1_4:38245667-38245686 | None:intergenic | 30.0% | |
| AAAAGCTTGAAAAATGTAGC+AGG | - | chr1_4:38245809-38245828 | Msa0162090:CDS | 30.0% | |
| AAGTGTTCAGAAAGAGTTAA+GGG | - | chr1_4:38245937-38245956 | Msa0162090:CDS | 30.0% | |
| !!! | GGACTTCTCTATTTTTTGAA+TGG | + | chr1_4:38245966-38245985 | None:intergenic | 30.0% |
| ! | TATTGGTCACATTTTTCTGA+TGG | + | chr1_4:38245987-38246006 | None:intergenic | 30.0% |
| !! | ATAAAAAAAGGTGTTAACGG+GGG | - | chr1_4:38246050-38246069 | Msa0162090:CDS | 30.0% |
| !! | AGCTCCATTTGTTATTAGTC+AGG | - | chr1_4:38243843-38243862 | Msa0162090:CDS | 35.0% |
| TCTTTCTTCGGCTAAATTCT+AGG | - | chr1_4:38243941-38243960 | Msa0162090:CDS | 35.0% | |
| AAATTCTATTGGCAGCTACA+AGG | - | chr1_4:38244003-38244022 | Msa0162090:CDS | 35.0% | |
| TGCTGTATATGTTCACATAC+AGG | - | chr1_4:38244215-38244234 | Msa0162090:CDS | 35.0% | |
| TGTTCACATACAGGAAACAA+AGG | - | chr1_4:38244224-38244243 | Msa0162090:CDS | 35.0% | |
| ! | AGTCCAGTTCTAATGTTCAT+GGG | - | chr1_4:38244376-38244395 | Msa0162090:intron | 35.0% |
| TTTGGATCAATCCAACTATG+AGG | - | chr1_4:38244600-38244619 | Msa0162090:CDS | 35.0% | |
| !!! | TTTGGCAGATCATTTTGGTT+AGG | - | chr1_4:38244832-38244851 | Msa0162090:CDS | 35.0% |
| TATAAAGCCCTTAACTCTAG+GGG | - | chr1_4:38244913-38244932 | Msa0162090:CDS | 35.0% | |
| ACCTTCATGCAATGTTACTA+TGG | - | chr1_4:38244995-38245014 | Msa0162090:intron | 35.0% | |
| ACCATAGTAACATTGCATGA+AGG | + | chr1_4:38244999-38245018 | None:intergenic | 35.0% | |
| CAAACATAAGTACAGAATGG+GGG | - | chr1_4:38245190-38245209 | Msa0162090:intron | 35.0% | |
| AGAAGAAGAACATCAACAAG+AGG | - | chr1_4:38245277-38245296 | Msa0162090:intron | 35.0% | |
| CAACAAGAGGAAAATTCTAC+AGG | - | chr1_4:38245290-38245309 | Msa0162090:intron | 35.0% | |
| ACAAGAGGAAAATTCTACAG+GGG | - | chr1_4:38245292-38245311 | Msa0162090:intron | 35.0% | |
| GGATATCTTGCAGTTATTAG+AGG | - | chr1_4:38245368-38245387 | Msa0162090:CDS | 35.0% | |
| !! | TTGCAGTTATTAGAGGCATT+AGG | - | chr1_4:38245375-38245394 | Msa0162090:CDS | 35.0% |
| !!! | GGTGTGATTTTTTGTTATGC+TGG | - | chr1_4:38245442-38245461 | Msa0162090:CDS | 35.0% |
| TCTCACACAAAACAGCTTAT+TGG | - | chr1_4:38245740-38245759 | Msa0162090:intron | 35.0% | |
| ACACAAAACAGCTTATTGGA+TGG | - | chr1_4:38245744-38245763 | Msa0162090:intron | 35.0% | |
| AAAACAGCTTATTGGATGGA+AGG | - | chr1_4:38245748-38245767 | Msa0162090:intron | 35.0% | |
| ! | TTCAAGCTTTTGATACCTAC+AGG | + | chr1_4:38245800-38245819 | None:intergenic | 35.0% |
| TTCCATCTGTGAACTTTACA+AGG | - | chr1_4:38245850-38245869 | Msa0162090:intron | 35.0% | |
| TTCCTTGTAAAGTTCACAGA+TGG | + | chr1_4:38245855-38245874 | None:intergenic | 35.0% | |
| ! | ATTTTGTTCTGTCACCTTCA+AGG | - | chr1_4:38245912-38245931 | Msa0162090:intron | 35.0% |
| CAAGTGTTCAGAAAGAGTTA+AGG | - | chr1_4:38245936-38245955 | Msa0162090:CDS | 35.0% | |
| CTTCATAAGACAGTAACACT+TGG | + | chr1_4:38246024-38246043 | None:intergenic | 35.0% | |
| AGGATTTGAAGATGCAAGTG+AGG | - | chr1_4:38243651-38243670 | Msa0162090:three_prime_UTR | 40.0% | |
| GATGCTTTGATCACATCCTT+TGG | + | chr1_4:38243719-38243738 | None:intergenic | 40.0% | |
| GAGAGTAACCAAGAATCTGA+AGG | - | chr1_4:38244252-38244271 | Msa0162090:CDS | 40.0% | |
| TCTTGTCACCTTCAGATTCT+TGG | + | chr1_4:38244263-38244282 | None:intergenic | 40.0% | |
| !! | GACAAGAGTGTTCTCTACTT+TGG | - | chr1_4:38244276-38244295 | Msa0162090:CDS | 40.0% |
| ! | GAGTCCAGTTCTAATGTTCA+TGG | - | chr1_4:38244375-38244394 | Msa0162090:intron | 40.0% |
| AAACCTGCGAGAGTAGAATT+AGG | + | chr1_4:38244468-38244487 | None:intergenic | 40.0% | |
| ATCAATCCAACTATGAGGTG+CGG | - | chr1_4:38244605-38244624 | Msa0162090:CDS | 40.0% | |
| TCCAAACGCGTGTCATAAAT+AGG | - | chr1_4:38244647-38244666 | Msa0162090:CDS | 40.0% | |
| TCCTATTTATGACACGCGTT+TGG | + | chr1_4:38244651-38244670 | None:intergenic | 40.0% | |
| TTTGCAAGACTCATGCATAC+AGG | + | chr1_4:38244679-38244698 | None:intergenic | 40.0% | |
| ACAAAGTAAGCAGGCATGTA+TGG | + | chr1_4:38244772-38244791 | None:intergenic | 40.0% | |
| GCTCTTACTACAAAGTAAGC+AGG | + | chr1_4:38244781-38244800 | None:intergenic | 40.0% | |
| !!! | ATGGCTTTGGCAGATCATTT+TGG | - | chr1_4:38244827-38244846 | Msa0162090:intron | 40.0% |
| ! | TGTTGAGGCAGATGCTTTTA+AGG | - | chr1_4:38244876-38244895 | Msa0162090:CDS | 40.0% |
| CATGCTTCAAACTGCTGAAT+TGG | - | chr1_4:38244948-38244967 | Msa0162090:intron | 40.0% | |
| GACAAAAGGTTCCCATGATA+AGG | + | chr1_4:38245138-38245157 | None:intergenic | 40.0% | |
| GGTAGGATATAAAGTAGCTG+CGG | - | chr1_4:38245211-38245230 | Msa0162090:intron | 40.0% | |
| TCTTCTTCTGCTTCATTCAC+TGG | + | chr1_4:38245266-38245285 | None:intergenic | 40.0% | |
| CCAACTAGCTCAATTCTGTA+AGG | + | chr1_4:38245335-38245354 | None:intergenic | 40.0% | |
| CCTTACAGAATTGAGCTAGT+TGG | - | chr1_4:38245332-38245351 | Msa0162090:intron | 40.0% | |
| AACAGGAGAGCTATTATGAC+AGG | - | chr1_4:38245494-38245513 | Msa0162090:CDS | 40.0% | |
| GAGAGCTATTATGACAGGAA+GGG | - | chr1_4:38245499-38245518 | Msa0162090:CDS | 40.0% | |
| CTCTATTGCACAGATGCTAT+TGG | - | chr1_4:38245608-38245627 | Msa0162090:intron | 40.0% | |
| TATTGCACAGATGCTATTGG+TGG | - | chr1_4:38245611-38245630 | Msa0162090:intron | 40.0% | |
| !!! | GTTGCTCCTGTTTTTACCTT+CGG | + | chr1_4:38245641-38245660 | None:intergenic | 40.0% |
| AATCTACTAGAGGATCCTGT+AGG | - | chr1_4:38245782-38245801 | Msa0162090:CDS | 40.0% | |
| AAATCCTTCCAAACAGAACC+AGG | + | chr1_4:38245896-38245915 | None:intergenic | 40.0% | |
| TTCTGAACACTTGACCTTGA+AGG | + | chr1_4:38245929-38245948 | None:intergenic | 40.0% | |
| AAGACAGTAACACTTGGTTC+TGG | + | chr1_4:38246018-38246037 | None:intergenic | 40.0% | |
| GCTTGTGTGTTTGTGTGTGT+TGG | - | chr1_4:38243615-38243634 | Msa0162090:three_prime_UTR | 45.0% | |
| TGGGCAAGTATGCATAACTC+TGG | + | chr1_4:38243679-38243698 | None:intergenic | 45.0% | |
| TAAAGAAGTCATGGTCCCCA+TGG | - | chr1_4:38244339-38244358 | Msa0162090:intron | 45.0% | |
| CCACCCATGAACATTAGAAC+TGG | + | chr1_4:38244382-38244401 | None:intergenic | 45.0% | |
| ! | CCAGTTCTAATGTTCATGGG+TGG | - | chr1_4:38244379-38244398 | Msa0162090:intron | 45.0% |
| GTTCTAATGTTCATGGGTGG+TGG | - | chr1_4:38244382-38244401 | Msa0162090:intron | 45.0% | |
| CTGCGAGAGTAGAATTAGGA+TGG | + | chr1_4:38244464-38244483 | None:intergenic | 45.0% | |
| CATCCTAATTCTACTCTCGC+AGG | - | chr1_4:38244462-38244481 | Msa0162090:CDS | 45.0% | |
| ACGCACCTCAATTCGATTGT+TGG | - | chr1_4:38244560-38244579 | Msa0162090:CDS | 45.0% | |
| CAAGACTCATGCATACAGGA+TGG | + | chr1_4:38244675-38244694 | None:intergenic | 45.0% | |
| TTGGTTAGGAGCAGCTTCAA+AGG | - | chr1_4:38244846-38244865 | Msa0162090:CDS | 45.0% | |
| TTCAAAGGCTGTGGTTGTTG+AGG | - | chr1_4:38244861-38244880 | Msa0162090:CDS | 45.0% | |
| ATGGTGACCCCTAGAGTTAA+GGG | + | chr1_4:38244923-38244942 | None:intergenic | 45.0% | |
| ! | CAGTTTGAAGCATGTCAGCA+TGG | + | chr1_4:38244942-38244961 | None:intergenic | 45.0% |
| !! | GCATGAAGGTGTTCAGTGTT+CGG | + | chr1_4:38244985-38245004 | None:intergenic | 45.0% |
| TAGAGATGATGCAGCATCAG+TGG | + | chr1_4:38245069-38245088 | None:intergenic | 45.0% | |
| TGCTGCATCATCTCTACTAG+TGG | - | chr1_4:38245073-38245092 | Msa0162090:intron | 45.0% | |
| TGCATCATCTCTACTAGTGG+CGG | - | chr1_4:38245076-38245095 | Msa0162090:intron | 45.0% | |
| !! | TAGTGGCGGCTCTAAACAAA+GGG | - | chr1_4:38245090-38245109 | Msa0162090:intron | 45.0% |
| TCATGGACGGTACCTTATCA+TGG | - | chr1_4:38245123-38245142 | Msa0162090:intron | 45.0% | |
| CATGGACGGTACCTTATCAT+GGG | - | chr1_4:38245124-38245143 | Msa0162090:intron | 45.0% | |
| GCAATAGTCTGCTCGACAAA+AGG | + | chr1_4:38245152-38245171 | None:intergenic | 45.0% | |
| TGTCGAGCAGACTATTGCTA+TGG | - | chr1_4:38245154-38245173 | Msa0162090:intron | 45.0% | |
| CATAAGTACAGAATGGGGGT+AGG | - | chr1_4:38245194-38245213 | Msa0162090:intron | 45.0% | |
| GGATATAAAGTAGCTGCGGA+TGG | - | chr1_4:38245215-38245234 | Msa0162090:intron | 45.0% | |
| ! | CAGAATTGAGCTAGTTGGTG+TGG | - | chr1_4:38245337-38245356 | Msa0162090:intron | 45.0% |
| ! | CTAGTTGGTGTGGTTTGTGA+TGG | - | chr1_4:38245347-38245366 | Msa0162090:intron | 45.0% |
| GGAGAGCTATTATGACAGGA+AGG | - | chr1_4:38245498-38245517 | Msa0162090:CDS | 45.0% | |
| !! | GCAAACTTGTTGACAGTGCT+AGG | - | chr1_4:38245585-38245604 | Msa0162090:intron | 45.0% |
| ACAGCTTATTGGATGGAAGG+AGG | - | chr1_4:38245751-38245770 | Msa0162090:intron | 45.0% | |
| CAGCTTATTGGATGGAAGGA+GGG | - | chr1_4:38245752-38245771 | Msa0162090:intron | 45.0% | |
| GGGTGATCACAATCTACTAG+AGG | - | chr1_4:38245772-38245791 | Msa0162090:intron | 45.0% | |
| !! | CAATGGAACCTGGTTCTGTT+TGG | - | chr1_4:38245885-38245904 | Msa0162090:intron | 45.0% |
| !! | AAAAAATAAAAATGAATAAA+TGG | + | chr1_4:38243877-38243896 | None:intergenic | 5.0% |
| !!! | ACATTTATTTATTTTTAAAT+AGG | - | chr1_4:38244165-38244184 | Msa0162090:CDS | 5.0% |
| !!! | AATAAACAATATTTTTTTAT+GGG | + | chr1_4:38246090-38246109 | None:intergenic | 5.0% |
| !!! | AAATAAACAATATTTTTTTA+TGG | + | chr1_4:38246091-38246110 | None:intergenic | 5.0% |
| ! | GTTTGTGTGTGTTGGCAGCT+AGG | - | chr1_4:38243623-38243642 | Msa0162090:three_prime_UTR | 50.0% |
| ! | GTGTTGGCAGCTAGGCAAAT+AGG | - | chr1_4:38243631-38243650 | Msa0162090:three_prime_UTR | 50.0% |
| AACTGGACTCCTCTCACTGA+GGG | + | chr1_4:38244365-38244384 | None:intergenic | 50.0% | |
| ! | AATGTTCATGGGTGGTGGCA+TGG | - | chr1_4:38244387-38244406 | Msa0162090:intron | 50.0% |
| ! | ATGTTCATGGGTGGTGGCAT+GGG | - | chr1_4:38244388-38244407 | Msa0162090:intron | 50.0% |
| CATGGTGACCCCTAGAGTTA+AGG | + | chr1_4:38244924-38244943 | None:intergenic | 50.0% | |
| !! | CTAGTGGCGGCTCTAAACAA+AGG | - | chr1_4:38245089-38245108 | Msa0162090:intron | 50.0% |
| CAAAGGGCGAGATGTGATCA+TGG | - | chr1_4:38245106-38245125 | Msa0162090:intron | 50.0% | |
| TTATGACAGGAAGGGCAGTG+AGG | - | chr1_4:38245507-38245526 | Msa0162090:CDS | 50.0% | |
| TATGACAGGAAGGGCAGTGA+GGG | - | chr1_4:38245508-38245527 | Msa0162090:CDS | 50.0% | |
| GGTCCACCGAAGGTAAAAAC+AGG | - | chr1_4:38245632-38245651 | Msa0162090:intron | 50.0% | |
| !!! | GCTCCTGTTTTTACCTTCGG+TGG | + | chr1_4:38245638-38245657 | None:intergenic | 50.0% |
| CAGAACCAGGTTCCATTGCT+GGG | + | chr1_4:38245883-38245902 | None:intergenic | 50.0% | |
| ACAGAACCAGGTTCCATTGC+TGG | + | chr1_4:38245884-38245903 | None:intergenic | 50.0% | |
| !! | GGAACCTGGTTCTGTTTGGA+AGG | - | chr1_4:38245889-38245908 | Msa0162090:intron | 50.0% |
| !! | TGGTTCTGGCAGCAGCATAT+TGG | + | chr1_4:38246004-38246023 | None:intergenic | 50.0% |
| GAACTGGACTCCTCTCACTG+AGG | + | chr1_4:38244366-38244385 | None:intergenic | 55.0% | |
| ATCCAACTATGAGGTGCGGC+TGG | - | chr1_4:38244609-38244628 | Msa0162090:CDS | 55.0% | |
| AGGAGCAGCTTCAAAGGCTG+TGG | - | chr1_4:38244852-38244871 | Msa0162090:CDS | 55.0% | |
| GGGCGAGATGTGATCATGGA+CGG | - | chr1_4:38245110-38245129 | Msa0162090:intron | 55.0% | |
| ! | TGCTATTGGTGGTCCACCGA+AGG | - | chr1_4:38245622-38245641 | Msa0162090:intron | 55.0% |
| CAAGGAACCTAGCCCAGCAA+TGG | - | chr1_4:38245868-38245887 | Msa0162090:intron | 55.0% | |
| TCCTCTCACTGAGGGCCATG+GGG | + | chr1_4:38244357-38244376 | None:intergenic | 60.0% | |
| CTCCTCTCACTGAGGGCCAT+GGG | + | chr1_4:38244358-38244377 | None:intergenic | 60.0% | |
| ACTCCTCTCACTGAGGGCCA+TGG | + | chr1_4:38244359-38244378 | None:intergenic | 60.0% | |
| CTCCAGCCGCACCTCATAGT+TGG | + | chr1_4:38244614-38244633 | None:intergenic | 60.0% | |
| CCAGGTTCCATTGCTGGGCT+AGG | + | chr1_4:38245878-38245897 | None:intergenic | 60.0% | |
| CCTAGCCCAGCAATGGAACC+TGG | - | chr1_4:38245875-38245894 | Msa0162090:intron | 60.0% | |
| TCCCCATGGCCCTCAGTGAG+AGG | - | chr1_4:38244353-38244372 | Msa0162090:intron | 65.0% | |
| ! | ATGGGTGGTGGCATGGGAGC+AGG | - | chr1_4:38244394-38244413 | Msa0162090:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 38243601 | 38246197 | 38243601 | ID=Msa0162090;Name=Msa0162090 |
| chr1_4 | mRNA | 38243601 | 38246197 | 38243601 | ID=Msa0162090-mRNA-1;Parent=Msa0162090;Name=Msa0162090-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|1|1|0.85|0.75|8|163|467 |
| chr1_4 | exon | 38243601 | 38243704 | 38243601 | ID=Msa0162090-mRNA-1:exon:11227;Parent=Msa0162090-mRNA-1 |
| chr1_4 | exon | 38243739 | 38244043 | 38243739 | ID=Msa0162090-mRNA-1:exon:11226;Parent=Msa0162090-mRNA-1 |
| chr1_4 | exon | 38244155 | 38244299 | 38244155 | ID=Msa0162090-mRNA-1:exon:11225;Parent=Msa0162090-mRNA-1 |
| chr1_4 | exon | 38244402 | 38244745 | 38244402 | ID=Msa0162090-mRNA-1:exon:11224;Parent=Msa0162090-mRNA-1 |
| chr1_4 | exon | 38244829 | 38244958 | 38244829 | ID=Msa0162090-mRNA-1:exon:11223;Parent=Msa0162090-mRNA-1 |
| chr1_4 | exon | 38245349 | 38245561 | 38245349 | ID=Msa0162090-mRNA-1:exon:11222;Parent=Msa0162090-mRNA-1 |
| chr1_4 | exon | 38245774 | 38245835 | 38245774 | ID=Msa0162090-mRNA-1:exon:11221;Parent=Msa0162090-mRNA-1 |
| chr1_4 | exon | 38245934 | 38246197 | 38245934 | ID=Msa0162090-mRNA-1:exon:11220;Parent=Msa0162090-mRNA-1 |
| chr1_4 | CDS | 38245934 | 38246197 | 38245934 | ID=Msa0162090-mRNA-1:cds;Parent=Msa0162090-mRNA-1 |
| chr1_4 | CDS | 38245774 | 38245835 | 38245774 | ID=Msa0162090-mRNA-1:cds;Parent=Msa0162090-mRNA-1 |
| chr1_4 | CDS | 38245349 | 38245561 | 38245349 | ID=Msa0162090-mRNA-1:cds;Parent=Msa0162090-mRNA-1 |
| chr1_4 | CDS | 38244829 | 38244958 | 38244829 | ID=Msa0162090-mRNA-1:cds;Parent=Msa0162090-mRNA-1 |
| chr1_4 | CDS | 38244402 | 38244745 | 38244402 | ID=Msa0162090-mRNA-1:cds;Parent=Msa0162090-mRNA-1 |
| chr1_4 | CDS | 38244155 | 38244299 | 38244155 | ID=Msa0162090-mRNA-1:cds;Parent=Msa0162090-mRNA-1 |
| chr1_4 | CDS | 38243798 | 38244043 | 38243798 | ID=Msa0162090-mRNA-1:cds;Parent=Msa0162090-mRNA-1 |
| chr1_4 | three_prime_UTR | 38243739 | 38243797 | 38243739 | ID=Msa0162090-mRNA-1:three_prime_utr;Parent=Msa0162090-mRNA-1 |
| chr1_4 | three_prime_UTR | 38243601 | 38243704 | 38243601 | ID=Msa0162090-mRNA-1:three_prime_utr;Parent=Msa0162090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
