Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163180 | XP_003592452.2 | 98.491 | 464 | 6 | 1 | 1 | 464 | 1 | 463 | 0.0 | 937 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163180 | sp|Q9FNY0|E2FA_ARATH | 56.930 | 469 | 158 | 12 | 16 | 458 | 30 | 480 | 9.83e-171 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163180 | G7IE33 | 98.491 | 464 | 6 | 1 | 1 | 464 | 1 | 463 | 0.0 | 937 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0163180 | TF | E2F-DP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0119870 | Msa0163180 | 0.897301 | 1.605041e-76 | -8.615850e-47 |
| Msa0163180 | Msa0527410 | 0.844188 | 8.827029e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163180 | MtrunA17_Chr1g0177351 | 98.491 | 464 | 6 | 1 | 1 | 464 | 1 | 463 | 0.0 | 937 |
| Msa0163180 | MtrunA17_Chr4g0025881 | 59.459 | 444 | 168 | 8 | 25 | 461 | 19 | 457 | 1.20e-175 | 500 |
| Msa0163180 | MtrunA17_Chr3g0142581 | 48.986 | 296 | 137 | 4 | 127 | 422 | 89 | 370 | 2.77e-84 | 264 |
| Msa0163180 | MtrunA17_Chr4g0059551 | 44.776 | 67 | 37 | 0 | 143 | 209 | 17 | 83 | 4.33e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163180 | AT2G36010.1 | 57.173 | 467 | 158 | 11 | 16 | 458 | 30 | 478 | 9.07e-174 | 496 |
| Msa0163180 | AT2G36010.3 | 56.930 | 469 | 158 | 12 | 16 | 458 | 30 | 480 | 1.00e-171 | 491 |
| Msa0163180 | AT5G22220.2 | 53.092 | 469 | 179 | 14 | 22 | 461 | 10 | 466 | 2.38e-143 | 419 |
| Msa0163180 | AT5G22220.3 | 52.790 | 466 | 182 | 13 | 22 | 461 | 10 | 463 | 1.29e-140 | 412 |
| Msa0163180 | AT2G36010.2 | 46.525 | 518 | 164 | 14 | 16 | 458 | 30 | 509 | 1.84e-134 | 397 |
| Msa0163180 | AT1G47870.2 | 47.319 | 317 | 117 | 7 | 105 | 420 | 123 | 390 | 2.06e-80 | 255 |
| Msa0163180 | AT1G47870.1 | 47.319 | 317 | 117 | 7 | 105 | 420 | 124 | 391 | 2.26e-80 | 254 |
| Msa0163180 | AT5G14960.1 | 41.304 | 92 | 49 | 1 | 136 | 227 | 6 | 92 | 1.78e-12 | 68.9 |
| Msa0163180 | AT3G48160.2 | 45.205 | 73 | 39 | 1 | 143 | 215 | 34 | 105 | 3.82e-11 | 65.1 |
| Msa0163180 | AT3G48160.1 | 45.205 | 73 | 39 | 1 | 143 | 215 | 34 | 105 | 3.92e-11 | 65.1 |
Find 184 sgRNAs with CRISPR-Local
Find 407 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCGCTGCTGTTGATTCT+AGG | 0.183439 | 1_4:+41171633 | Msa0163180:CDS |
| GAAAATGATCGGAGAGAAAT+TGG | 0.216241 | 1_4:-41171439 | None:intergenic |
| TGTAGAATGATGCTGATTAT+TGG | 0.219679 | 1_4:+41176198 | Msa0163180:intron |
| AGGACATGATTTGCCTTCTT+TGG | 0.234385 | 1_4:-41172911 | None:intergenic |
| TTACCTCTTGCTTCAAGTTC+AGG | 0.236533 | 1_4:+41175843 | Msa0163180:CDS |
| GAGAAATTTGAAGAGATTAA+TGG | 0.237066 | 1_4:+41175801 | Msa0163180:CDS |
| TATCACTAAGTTAGAAAGTA+TGG | 0.250190 | 1_4:+41176518 | Msa0163180:three_prime_UTR |
| AATCAAAATCATCTCTGATT+AGG | 0.254900 | 1_4:-41176488 | None:intergenic |
| TGTGACCGAGGAAGATATTA+AGG | 0.256644 | 1_4:+41175228 | Msa0163180:CDS |
| GTGCACCCTTGAAGTTGTTT+GGG | 0.275713 | 1_4:-41176919 | None:intergenic |
| AGTGCACCCTTGAAGTTGTT+TGG | 0.292043 | 1_4:-41176920 | None:intergenic |
| CAATTGATGTCTACCTTATC+AGG | 0.299411 | 1_4:+41175613 | Msa0163180:CDS |
| ATATGACATAACTAATGTTT+TGG | 0.312982 | 1_4:+41173423 | Msa0163180:CDS |
| ATCAAAATCATCTCTGATTA+GGG | 0.322568 | 1_4:-41176487 | None:intergenic |
| AATGAGGAAGGGAGGGAAGA+AGG | 0.344191 | 1_4:-41171357 | None:intergenic |
| TATCTTCCTCGGTCACAAAA+AGG | 0.345600 | 1_4:-41175222 | None:intergenic |
| CACTGCTGTGTTGCGTAGTC+AGG | 0.352372 | 1_4:+41177214 | Msa0163180:three_prime_UTR |
| ATGAGGAAGGGAGGGAAGAA+GGG | 0.354112 | 1_4:-41171356 | None:intergenic |
| ACTATGCCACACTTCAAATA+TGG | 0.358238 | 1_4:-41176844 | None:intergenic |
| TAAGGGCCTACCTTGCTTCC+AGG | 0.358343 | 1_4:+41175246 | Msa0163180:CDS |
| AGGAAGGGAGGGAAGAAGGG+AGG | 0.362461 | 1_4:-41171353 | None:intergenic |
| AAAACTCCTTTGTCTGCAAA+AGG | 0.367786 | 1_4:+41172862 | Msa0163180:CDS |
| TGGTGATATCTCTTTGCTTA+AGG | 0.368188 | 1_4:+41173645 | Msa0163180:CDS |
| TGAATGATAATTGAATAATA+AGG | 0.369374 | 1_4:-41176965 | None:intergenic |
| CGACGATCAGTATTTGTATC+TGG | 0.377681 | 1_4:+41176809 | Msa0163180:three_prime_UTR |
| GAAGCAAGAGGTAAGCTTGC+GGG | 0.386616 | 1_4:-41175834 | None:intergenic |
| CTGATAAGGTAGACATCAAT+TGG | 0.387115 | 1_4:-41175612 | None:intergenic |
| TTCATTACATTAGTGTATCC+AGG | 0.390006 | 1_4:-41172829 | None:intergenic |
| ATATCAAGAACAGAATATAT+TGG | 0.392044 | 1_4:+41173470 | Msa0163180:CDS |
| CCAGCAGGAGTGAGCGGAGA+AGG | 0.392492 | 1_4:-41173066 | None:intergenic |
| CCTCAGCACGCTTGAGCAAA+TGG | 0.395797 | 1_4:-41173252 | None:intergenic |
| TCCAGCGTTACCGGACATTA+CGG | 0.398218 | 1_4:-41171495 | None:intergenic |
| TTCCCTAAACTTACTTCCTC+AGG | 0.398706 | 1_4:-41175453 | None:intergenic |
| TGTGTAAGCCTTCGTGCAAT+AGG | 0.398763 | 1_4:-41177089 | None:intergenic |
| AGGGTGCACTGGATATTGTT+AGG | 0.399664 | 1_4:+41176933 | Msa0163180:three_prime_UTR |
| TACCTCTTGCTTCAAGTTCA+GGG | 0.401939 | 1_4:+41175844 | Msa0163180:CDS |
| GTCGGAAGGTCCAGCGTTAC+CGG | 0.403176 | 1_4:-41171504 | None:intergenic |
| AATGTTTCACAAGAGTTTGC+TGG | 0.409766 | 1_4:+41175966 | Msa0163180:CDS |
| AAAATGATCGGAGAGAAATT+GGG | 0.415372 | 1_4:-41171438 | None:intergenic |
| AGTAAATCACCGACTCTCTT+AGG | 0.417798 | 1_4:+41176663 | Msa0163180:three_prime_UTR |
| GTCAGGGACATTCGATCAAC+AGG | 0.420494 | 1_4:+41177231 | Msa0163180:three_prime_UTR |
| TTCTGACCAGCATTTGAGAT+AGG | 0.420653 | 1_4:-41172940 | None:intergenic |
| GGAAGTTGACAACCTTTCTC+TGG | 0.430841 | 1_4:+41174924 | Msa0163180:CDS |
| TAAAGCAGCAGAAACTTTGC+AGG | 0.430868 | 1_4:+41173294 | Msa0163180:CDS |
| AAACTCCTTTGTCTGCAAAA+GGG | 0.431635 | 1_4:+41172863 | Msa0163180:CDS |
| GCCGCCGTTGAAGCGTCATC+TGG | 0.433324 | 1_4:+41171562 | Msa0163180:CDS |
| ATCTGTGCTCCGGTCGGCAT+CGG | 0.435761 | 1_4:-41171536 | None:intergenic |
| AATCGGAGTGGAAACGGAAA+TGG | 0.441749 | 1_4:-41171461 | None:intergenic |
| GGAGATATAGAATCATTCTA+AGG | 0.456891 | 1_4:+41175577 | Msa0163180:CDS |
| CTCGAGAGCATTTCAAAGTC+AGG | 0.458107 | 1_4:-41176413 | None:intergenic |
| TGTCGTTATGACAGTTCCTT+AGG | 0.460009 | 1_4:+41173093 | Msa0163180:CDS |
| TCCTTTCCACTGCATTCAGC+AGG | 0.460324 | 1_4:-41175897 | None:intergenic |
| GTGACCGAGGAAGATATTAA+GGG | 0.460410 | 1_4:+41175229 | Msa0163180:CDS |
| GCATAACAGCTAATGTTGAT+TGG | 0.461803 | 1_4:+41176369 | Msa0163180:intron |
| GTTATCATCCTCTGTATTGA+GGG | 0.462368 | 1_4:+41176540 | Msa0163180:three_prime_UTR |
| TTACGGTTACGGTGGAGAAT+CGG | 0.466832 | 1_4:-41171478 | None:intergenic |
| CCTTCTCCGCTCACTCCTGC+TGG | 0.469787 | 1_4:+41173066 | Msa0163180:CDS |
| GCAAGTAGTTATACCTGATA+AGG | 0.470864 | 1_4:-41175626 | None:intergenic |
| ATGTTTCACAAGAGTTTGCT+GGG | 0.474909 | 1_4:+41175967 | Msa0163180:CDS |
| GGAAGGGAGGGAAGAAGGGA+GGG | 0.475986 | 1_4:-41171352 | None:intergenic |
| TGCCGACCGGAGCACAGATT+CGG | 0.476300 | 1_4:+41171540 | Msa0163180:CDS |
| AAGAGAGAAGAAAATGAGGA+AGG | 0.476565 | 1_4:-41171369 | None:intergenic |
| GCTTGAAATCATATAGCAAA+TGG | 0.476786 | 1_4:-41177154 | None:intergenic |
| ATCATTCTAAGGAGCACAAT+GGG | 0.480097 | 1_4:+41175588 | Msa0163180:CDS |
| AGTCCTGGCGATGGAGTTTG+TGG | 0.482085 | 1_4:-41176437 | None:intergenic |
| GGGGAAGGGCAAACAAGTCA+AGG | 0.482335 | 1_4:+41172884 | Msa0163180:CDS |
| AAACTTACTTCCTCAGGATC+AGG | 0.482688 | 1_4:-41175447 | None:intergenic |
| TACTCATCAGTCGGTGCAAA+CGG | 0.485816 | 1_4:-41171605 | None:intergenic |
| AGAAGAAAATGAGGAAGGGA+GGG | 0.485887 | 1_4:-41171364 | None:intergenic |
| GTGGAGAATCGGAGTGGAAA+CGG | 0.485991 | 1_4:-41171467 | None:intergenic |
| GCTGACCCCAAACAACTTCA+AGG | 0.487739 | 1_4:+41176913 | Msa0163180:three_prime_UTR |
| TGAGCAACAAGTGACAGAAA+TGG | 0.489280 | 1_4:+41175872 | Msa0163180:CDS |
| GTCTCTGCTCTTCCAGAGAA+AGG | 0.490737 | 1_4:-41174936 | None:intergenic |
| AGAGAAGAGAGAAGAAAATG+AGG | 0.496530 | 1_4:-41171373 | None:intergenic |
| GAGAAGAAAATGAGGAAGGG+AGG | 0.496878 | 1_4:-41171365 | None:intergenic |
| GATGGTGCTTCCGCAAGTCC+TGG | 0.500096 | 1_4:-41176452 | None:intergenic |
| GGTTATCATCCTCTGTATTG+AGG | 0.501922 | 1_4:+41176539 | Msa0163180:three_prime_UTR |
| AGCCGTTATTGTTAGATCTC+CGG | 0.504106 | 1_4:+41171679 | Msa0163180:CDS |
| GTTTCGAAAGCATCTGAGGA+TGG | 0.506163 | 1_4:+41177129 | Msa0163180:three_prime_UTR |
| CCAGCATTTGAGATAGGTGT+TGG | 0.506282 | 1_4:-41172934 | None:intergenic |
| AACTCCTTTGTCTGCAAAAG+GGG | 0.506592 | 1_4:+41172864 | Msa0163180:CDS |
| GGAATTGAATCTTCTACGCC+TGG | 0.513959 | 1_4:+41173613 | Msa0163180:CDS |
| AAGGTCATAAAGCGGAAGAA+TGG | 0.515250 | 1_4:+41172763 | Msa0163180:intron |
| AAACAACTTCAAGGGTGCAC+TGG | 0.515506 | 1_4:+41176922 | Msa0163180:three_prime_UTR |
| AGAGAGAAGAAAATGAGGAA+GGG | 0.520744 | 1_4:-41171368 | None:intergenic |
| CAGCAGGAGTGAGCGGAGAA+GGG | 0.521252 | 1_4:-41173065 | None:intergenic |
| TGAGAAGAGAGCAGAGCTTG+AGG | 0.521585 | 1_4:-41175927 | None:intergenic |
| CGTGGCTCGCCGATGCCGAC+CGG | 0.525876 | 1_4:+41171527 | Msa0163180:CDS |
| GGCCGAATCTGTGCTCCGGT+CGG | 0.529279 | 1_4:-41171542 | None:intergenic |
| AGTCGGTGCAAACGGTGGCT+TGG | 0.531462 | 1_4:-41171597 | None:intergenic |
| CGGCATCGGCGAGCCACGGT+CGG | 0.533060 | 1_4:-41171522 | None:intergenic |
| AAATGATCGGAGAGAAATTG+GGG | 0.534132 | 1_4:-41171437 | None:intergenic |
| AAGTCAAGGGCATCCAAAGA+AGG | 0.536537 | 1_4:+41172898 | Msa0163180:CDS |
| CGGTCGGCATCGGCGAGCCA+CGG | 0.539391 | 1_4:-41171526 | None:intergenic |
| AACTCCATCGCCAGGACTTG+CGG | 0.541849 | 1_4:+41176442 | Msa0163180:CDS |
| ACCGTAATGTCCGGTAACGC+TGG | 0.543022 | 1_4:+41171494 | Msa0163180:exon |
| AGGCCACAAACTCCATCGCC+AGG | 0.544206 | 1_4:+41176434 | Msa0163180:CDS |
| CACCGGAGATCTAACAATAA+CGG | 0.545488 | 1_4:-41171681 | None:intergenic |
| ATCGGCGAGCCACGGTCGGA+AGG | 0.546657 | 1_4:-41171518 | None:intergenic |
| CTATACTATAGGTGCAAAAG+AGG | 0.547054 | 1_4:+41173395 | Msa0163180:intron |
| AAGCAAGAGGTAAGCTTGCG+GGG | 0.551818 | 1_4:-41175833 | None:intergenic |
| AGCAGGAGTGAGCGGAGAAG+GGG | 0.552395 | 1_4:-41173064 | None:intergenic |
| TTGCTCAAGCGTGCTGAGGA+TGG | 0.554722 | 1_4:+41173256 | Msa0163180:CDS |
| CAAAAGTCAAGTAACAGCCC+TGG | 0.555813 | 1_4:+41172811 | Msa0163180:CDS |
| TATTTGAAGTGTGGCATAGT+GGG | 0.556790 | 1_4:+41176847 | Msa0163180:three_prime_UTR |
| TGCACCCTTGAAGTTGTTTG+GGG | 0.558626 | 1_4:-41176918 | None:intergenic |
| GCTTCCGCAAGTCCTGGCGA+TGG | 0.558700 | 1_4:-41176446 | None:intergenic |
| ATCTTCTACGCCTGGTAATG+TGG | 0.558876 | 1_4:+41173621 | Msa0163180:CDS |
| AGAGACTAGATGATCAGATA+AGG | 0.559999 | 1_4:+41174953 | Msa0163180:CDS |
| CGGCGGCCGAATCTGTGCTC+CGG | 0.564361 | 1_4:-41171546 | None:intergenic |
| TCATAACGACAGCTACCAGC+AGG | 0.570121 | 1_4:-41173081 | None:intergenic |
| TTTGTTTCGGATAGATGTGG+AGG | 0.571007 | 1_4:-41171326 | None:intergenic |
| TAGGCCCTTAATATCTTCCT+CGG | 0.571156 | 1_4:-41175233 | None:intergenic |
| CCAACACCTATCTCAAATGC+TGG | 0.572738 | 1_4:+41172934 | Msa0163180:CDS |
| TATTAGCCATATTTGAAGTG+TGG | 0.573232 | 1_4:+41176838 | Msa0163180:three_prime_UTR |
| GACCCTGAACTTGAAGCAAG+AGG | 0.573741 | 1_4:-41175846 | None:intergenic |
| GCATTTGAGATAGGTGTTGG+AGG | 0.574157 | 1_4:-41172931 | None:intergenic |
| TAGTAGACATACTAAGCTTG+TGG | 0.576638 | 1_4:+41176699 | Msa0163180:three_prime_UTR |
| GTTACCGGACATTACGGTTA+CGG | 0.578279 | 1_4:-41171489 | None:intergenic |
| TCATTACATTAGTGTATCCA+GGG | 0.578943 | 1_4:-41172828 | None:intergenic |
| ACAGCTAATGTTGATTGGAG+TGG | 0.580563 | 1_4:+41176374 | Msa0163180:intron |
| AACGCCAGATGACGCTTCAA+CGG | 0.580618 | 1_4:-41171566 | None:intergenic |
| AGCATATCTAAGTGGGAACA+AGG | 0.581044 | 1_4:+41177174 | Msa0163180:three_prime_UTR |
| GCACTGGATATTGTTAGGAC+AGG | 0.583065 | 1_4:+41176938 | Msa0163180:three_prime_UTR |
| TTTCGAAAGCATCTGAGGAT+GGG | 0.583104 | 1_4:+41177130 | Msa0163180:three_prime_UTR |
| AAGTTAGCATAACAGATATG+TGG | 0.583522 | 1_4:+41176237 | Msa0163180:CDS |
| AAAGAACTCACCTGGAAGCA+AGG | 0.584852 | 1_4:-41175256 | None:intergenic |
| ATATTTGAAGTGTGGCATAG+TGG | 0.584932 | 1_4:+41176846 | Msa0163180:three_prime_UTR |
| ATATCACCATCCACATTACC+AGG | 0.586810 | 1_4:-41173631 | None:intergenic |
| GATTTCAAGCATATCTAAGT+GGG | 0.590275 | 1_4:+41177167 | Msa0163180:three_prime_UTR |
| GCCAGATGACGCTTCAACGG+CGG | 0.590423 | 1_4:-41171563 | None:intergenic |
| TGATTTCAAGCATATCTAAG+TGG | 0.590546 | 1_4:+41177166 | Msa0163180:three_prime_UTR |
| ATACTTACATCAGCATCTGA+AGG | 0.592246 | 1_4:-41176008 | None:intergenic |
| TACTATAGGTGCAAAAGAGG+AGG | 0.592536 | 1_4:+41173398 | Msa0163180:intron |
| AAAGTATGATACTCATCAGT+CGG | 0.596002 | 1_4:-41171614 | None:intergenic |
| AACGCTGGACCTTCCGACCG+TGG | 0.596010 | 1_4:+41171509 | Msa0163180:CDS |
| TTGTTTCGGATAGATGTGGA+GGG | 0.596906 | 1_4:-41171325 | None:intergenic |
| AACGGCTTCATTGACATGAT+CGG | 0.597493 | 1_4:-41171663 | None:intergenic |
| CAGCTACCAGCAGGAGTGAG+CGG | 0.598273 | 1_4:-41173072 | None:intergenic |
| CTCAGGATCAGGAACTTCCA+AGG | 0.601233 | 1_4:-41175436 | None:intergenic |
| TCTACGCCTGGTAATGTGGA+TGG | 0.603037 | 1_4:+41173625 | Msa0163180:CDS |
| CTTGGAAGTTCCTGATCCTG+AGG | 0.604439 | 1_4:+41175437 | Msa0163180:CDS |
| AAACGGAAATGGAAAATGAT+CGG | 0.604850 | 1_4:-41171450 | None:intergenic |
| AGCTCCGCATGGAACCACCT+TGG | 0.605657 | 1_4:+41175419 | Msa0163180:CDS |
| TCCACCGTAACCGTAATGTC+CGG | 0.609815 | 1_4:+41171485 | Msa0163180:exon |
| AATGGAATGAATGAAAGTGA+AGG | 0.612614 | 1_4:+41172781 | Msa0163180:CDS |
| GATAGTTTCGAAAGCATCTG+AGG | 0.614109 | 1_4:+41177125 | Msa0163180:three_prime_UTR |
| CTGACTTTGAAATGCTCTCG+AGG | 0.615106 | 1_4:+41176414 | Msa0163180:CDS |
| AACTCACCTGGAAGCAAGGT+AGG | 0.616174 | 1_4:-41175252 | None:intergenic |
| TACTTACATCAGCATCTGAA+GGG | 0.619198 | 1_4:-41176007 | None:intergenic |
| ACTGCATGAAATGCAAAGGT+AGG | 0.621047 | 1_4:+41176780 | Msa0163180:three_prime_UTR |
| AGCTAGCCTTGTGAATGTTG+AGG | 0.621713 | 1_4:+41176589 | Msa0163180:three_prime_UTR |
| CTGACCCCAAACAACTTCAA+GGG | 0.624056 | 1_4:+41176914 | Msa0163180:three_prime_UTR |
| TCTCCGCTGTAGTTCGTCAA+CGG | 0.627564 | 1_4:-41175559 | None:intergenic |
| CCATTTGCTCAAGCGTGCTG+AGG | 0.631281 | 1_4:+41173252 | Msa0163180:CDS |
| ATAGCAATCAAAGCTCCGCA+TGG | 0.631816 | 1_4:+41175408 | Msa0163180:CDS |
| CAGCATCCTCAACATTCACA+AGG | 0.636720 | 1_4:-41176595 | None:intergenic |
| AATCATTCTAAGGAGCACAA+TGG | 0.638536 | 1_4:+41175587 | Msa0163180:CDS |
| AGCAAGAGGTAAGCTTGCGG+GGG | 0.640114 | 1_4:-41175832 | None:intergenic |
| GTTTCACAAGAGTTTGCTGG+GGG | 0.641606 | 1_4:+41175969 | Msa0163180:CDS |
| TCGTTTATGCCTAAGAGAGT+CGG | 0.643067 | 1_4:-41176672 | None:intergenic |
| ACTCCTTTGTCTGCAAAAGG+GGG | 0.643497 | 1_4:+41172865 | Msa0163180:CDS |
| TTGGGATGCCTATTGCACGA+AGG | 0.652524 | 1_4:+41177081 | Msa0163180:three_prime_UTR |
| ACCTGCTGAATGCAGTGGAA+AGG | 0.654494 | 1_4:+41175896 | Msa0163180:CDS |
| GCAAGAGGTAAGCTTGCGGG+GGG | 0.656380 | 1_4:-41175831 | None:intergenic |
| GGGAAGGGCAAACAAGTCAA+GGG | 0.657296 | 1_4:+41172885 | Msa0163180:CDS |
| TGAAGCAAGAGGTAAGCTTG+CGG | 0.662777 | 1_4:-41175835 | None:intergenic |
| ACTGCTGTGTTGCGTAGTCA+GGG | 0.668372 | 1_4:+41177215 | Msa0163180:three_prime_UTR |
| ATGGTACCTGCTGAATGCAG+TGG | 0.669987 | 1_4:+41175891 | Msa0163180:CDS |
| TGCTACTGCATGAAATGCAA+AGG | 0.672548 | 1_4:+41176776 | Msa0163180:three_prime_UTR |
| TCATCAGTCGGTGCAAACGG+TGG | 0.672671 | 1_4:-41171602 | None:intergenic |
| TTAGGGTTAGCTACAGTCGA+TGG | 0.674010 | 1_4:-41176470 | None:intergenic |
| AGGCCGTTGACGAACTACAG+CGG | 0.677542 | 1_4:+41175556 | Msa0163180:intron |
| TTATCATCCTCTGTATTGAG+GGG | 0.677777 | 1_4:+41176541 | Msa0163180:three_prime_UTR |
| GTAGCTTCCCCTCAATACAG+AGG | 0.684688 | 1_4:-41176548 | None:intergenic |
| TGTTTCACAAGAGTTTGCTG+GGG | 0.692916 | 1_4:+41175968 | Msa0163180:CDS |
| TAATGTTGATTGGAGTGGAG+TGG | 0.694763 | 1_4:+41176379 | Msa0163180:CDS |
| GTTACGGTGGAGAATCGGAG+TGG | 0.705240 | 1_4:-41171473 | None:intergenic |
| AATGATCGGAGAGAAATTGG+GGG | 0.706493 | 1_4:-41171436 | None:intergenic |
| ACCGGACATTACGGTTACGG+TGG | 0.713898 | 1_4:-41171486 | None:intergenic |
| ACTTCCAAGGTGGTTCCATG+CGG | 0.714996 | 1_4:-41175423 | None:intergenic |
| GGTGGTGTAAGGTCATAAAG+CGG | 0.723032 | 1_4:+41172755 | Msa0163180:intron |
| AGGATCAGGAACTTCCAAGG+TGG | 0.735853 | 1_4:-41175433 | None:intergenic |
| TGAATGTTGAGGATGCTGTG+AGG | 0.792058 | 1_4:+41176600 | Msa0163180:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCTTTTTAAATTATTAC+CGG | + | chr1_4:41172320-41172339 | Msa0163180:intron | 10.0% |
| !!! | TAGAAAAAATGTATATATTT+TGG | - | chr1_4:41173524-41173543 | None:intergenic | 10.0% |
| !!! | TTTTTTTAGTATTTAATGAT+TGG | + | chr1_4:41176138-41176157 | Msa0163180:intron | 10.0% |
| !!! | AAAATCTTTTGTATAGAATA+CGG | - | chr1_4:41173321-41173340 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTCCTTTTTGAAA+AGG | + | chr1_4:41176872-41176891 | Msa0163180:three_prime_UTR | 15.0% |
| !! | TGAATGATAATTGAATAATA+AGG | - | chr1_4:41176968-41176987 | None:intergenic | 15.0% |
| !!! | TTTATTTTTGTGGAAATAGT+TGG | + | chr1_4:41171835-41171854 | Msa0163180:intron | 20.0% |
| !! | CAACTTGGTTTAATTAAAAT+TGG | + | chr1_4:41172000-41172019 | Msa0163180:intron | 20.0% |
| !! | TTGGTTTAATTAAAATTGGA+GGG | + | chr1_4:41172004-41172023 | Msa0163180:intron | 20.0% |
| !! | TAGATAAATGGAAAGTTAAT+CGG | - | chr1_4:41172972-41172991 | None:intergenic | 20.0% |
| !! | TTGAACATAACATAGATAAA+TGG | - | chr1_4:41172984-41173003 | None:intergenic | 20.0% |
| !! | TTTAAATTCTCCTATACTAT+AGG | + | chr1_4:41173384-41173403 | Msa0163180:intron | 20.0% |
| !!! | ATATGACATAACTAATGTTT+TGG | + | chr1_4:41173423-41173442 | Msa0163180:CDS | 20.0% |
| !! | ATATCAAGAACAGAATATAT+TGG | + | chr1_4:41173470-41173489 | Msa0163180:CDS | 20.0% |
| !! | AAGTCATTCTAATTAATTTC+TGG | - | chr1_4:41174786-41174805 | None:intergenic | 20.0% |
| !! | AATTAATTAGAATGACTTAG+TGG | + | chr1_4:41174788-41174807 | Msa0163180:intron | 20.0% |
| !! | AATGAATCTAAGAACTAAAT+GGG | - | chr1_4:41175119-41175138 | None:intergenic | 20.0% |
| !! | AAATGAATCTAAGAACTAAA+TGG | - | chr1_4:41175120-41175139 | None:intergenic | 20.0% |
| !!! | AATAACAATATTTTTCCTTC+TGG | - | chr1_4:41175159-41175178 | None:intergenic | 20.0% |
| !!! | AACAATGTTGATAATAACAA+TGG | - | chr1_4:41175308-41175327 | None:intergenic | 20.0% |
| !! | TCAAAAATTCCAAAATTAAC+TGG | - | chr1_4:41175760-41175779 | None:intergenic | 20.0% |
| !!! | AGAAAAGCATTAAAACAAAA+AGG | - | chr1_4:41176277-41176296 | None:intergenic | 20.0% |
| !! | TTTTGTTCATTTTGCATCTT+CGG | + | chr1_4:41171753-41171772 | Msa0163180:intron | 25.0% |
| !!! | GTTTTACATGCTTTTGATTT+TGG | + | chr1_4:41171864-41171883 | Msa0163180:intron | 25.0% |
| ! | TTAAAATTATTTCCGAACAC+TGG | + | chr1_4:41171968-41171987 | Msa0163180:intron | 25.0% |
| ! | CTTGGTTTAATTAAAATTGG+AGG | + | chr1_4:41172003-41172022 | Msa0163180:intron | 25.0% |
| !! | TTTTTAAATTATTACCGGTG+TGG | + | chr1_4:41172325-41172344 | Msa0163180:intron | 25.0% |
| !! | TTATGAACTCTTTTCATTTG+TGG | + | chr1_4:41172529-41172548 | Msa0163180:intron | 25.0% |
| !! | TGTATGATTAATTGCTACTT+TGG | + | chr1_4:41172625-41172644 | Msa0163180:intron | 25.0% |
| ! | CTTATTGTTTATGAACATGT+TGG | + | chr1_4:41172734-41172753 | Msa0163180:intron | 25.0% |
| ! | AGATAAATGGAAAGTTAATC+GGG | - | chr1_4:41172971-41172990 | None:intergenic | 25.0% |
| ! | TATAGTTTCTTATGACATGT+AGG | + | chr1_4:41173039-41173058 | Msa0163180:intron | 25.0% |
| ! | TACACTAATACATATCTAGA+AGG | - | chr1_4:41173161-41173180 | None:intergenic | 25.0% |
| ! | AGAAAAAGTAGCAGATATAT+TGG | - | chr1_4:41173346-41173365 | None:intergenic | 25.0% |
| ! | AGGAGAATTTAAATTCATGT+AGG | - | chr1_4:41173377-41173396 | None:intergenic | 25.0% |
| ! | ATTGTATAACAATTAGTTCC+AGG | - | chr1_4:41173710-41173729 | None:intergenic | 25.0% |
| ! | TGATAGCATCAATATAAACA+TGG | - | chr1_4:41173833-41173852 | None:intergenic | 25.0% |
| ! | TGATGCTATCAATATTGAAA+AGG | + | chr1_4:41173842-41173861 | Msa0163180:intron | 25.0% |
| !! | TGAAAAGGATTAGTAATGAA+AGG | + | chr1_4:41173857-41173876 | Msa0163180:intron | 25.0% |
| ! | TTACAATATTCAACTAGTTG+TGG | - | chr1_4:41174454-41174473 | None:intergenic | 25.0% |
| ! | TGAATATTGTAACTCAAACT+AGG | + | chr1_4:41174462-41174481 | Msa0163180:intron | 25.0% |
| ! | AATATGTTGTGATAAGGATA+AGG | + | chr1_4:41174593-41174612 | Msa0163180:intron | 25.0% |
| !!! | TTTGTTTTTGCATGTTGATA+AGG | + | chr1_4:41174633-41174652 | Msa0163180:intron | 25.0% |
| !!! | TTGTTTTTGCATGTTGATAA+GGG | + | chr1_4:41174634-41174653 | Msa0163180:intron | 25.0% |
| !! | TAGATATTTGAAACTGAGTT+TGG | + | chr1_4:41174657-41174676 | Msa0163180:intron | 25.0% |
| !! | TATGTATATCAAGTTGTTAG+AGG | + | chr1_4:41174709-41174728 | Msa0163180:intron | 25.0% |
| !! | CTTTTGAACCATTATTAACA+GGG | + | chr1_4:41175037-41175056 | Msa0163180:intron | 25.0% |
| !! | ACCAATTTTCAATTCCTTTT+AGG | + | chr1_4:41175197-41175216 | Msa0163180:intron | 25.0% |
| ! | ACCTAAAAGGAATTGAAAAT+TGG | - | chr1_4:41175201-41175220 | None:intergenic | 25.0% |
| !!! | GTTGATAATAACAATGGAAA+AGG | - | chr1_4:41175302-41175321 | None:intergenic | 25.0% |
| ! | GAGAAATTTGAAGAGATTAA+TGG | + | chr1_4:41175801-41175820 | Msa0163180:CDS | 25.0% |
| !!! | TTTGTATTGATTAAACGCTT+CGG | + | chr1_4:41176098-41176117 | Msa0163180:intron | 25.0% |
| ! | AATACTAAAAAAACAACTGC+AGG | - | chr1_4:41176131-41176150 | None:intergenic | 25.0% |
| ! | ATCAAAATCATCTCTGATTA+GGG | - | chr1_4:41176490-41176509 | None:intergenic | 25.0% |
| ! | AATCAAAATCATCTCTGATT+AGG | - | chr1_4:41176491-41176510 | None:intergenic | 25.0% |
| ! | TATCACTAAGTTAGAAAGTA+TGG | + | chr1_4:41176518-41176537 | Msa0163180:three_prime_UTR | 25.0% |
| !! | AATTTTGTTTCGGATAGATG+TGG | - | chr1_4:41171332-41171351 | None:intergenic | 30.0% |
| AAAATGATCGGAGAGAAATT+GGG | - | chr1_4:41171441-41171460 | None:intergenic | 30.0% | |
| AAACGGAAATGGAAAATGAT+CGG | - | chr1_4:41171453-41171472 | None:intergenic | 30.0% | |
| AAAGTATGATACTCATCAGT+CGG | - | chr1_4:41171617-41171636 | None:intergenic | 30.0% | |
| !! | GCTTTGAAATTTCACTTGTA+TGG | + | chr1_4:41172037-41172056 | Msa0163180:intron | 30.0% |
| ! | AACTGTGTCGAAAACATTTT+CGG | + | chr1_4:41172073-41172092 | Msa0163180:intron | 30.0% |
| ATATGCTTATTCTTGTTAGC+TGG | + | chr1_4:41172148-41172167 | Msa0163180:intron | 30.0% | |
| AGTTCATTAAGTCTAATGCT+TGG | + | chr1_4:41172203-41172222 | Msa0163180:intron | 30.0% | |
| TGATTATGTGCAAAAATGTG+TGG | + | chr1_4:41172381-41172400 | Msa0163180:intron | 30.0% | |
| ! | TGCAAAAATGTGTGGATTTT+CGG | + | chr1_4:41172389-41172408 | Msa0163180:intron | 30.0% |
| ACATCAATATATCGGTGAAA+TGG | - | chr1_4:41172676-41172695 | None:intergenic | 30.0% | |
| ACACACACACATCAATATAT+CGG | - | chr1_4:41172684-41172703 | None:intergenic | 30.0% | |
| ATTGTTTATGAACATGTTGG+TGG | + | chr1_4:41172737-41172756 | Msa0163180:intron | 30.0% | |
| AATGGAATGAATGAAAGTGA+AGG | + | chr1_4:41172781-41172800 | Msa0163180:CDS | 30.0% | |
| TCATTACATTAGTGTATCCA+GGG | - | chr1_4:41172831-41172850 | None:intergenic | 30.0% | |
| TTCATTACATTAGTGTATCC+AGG | - | chr1_4:41172832-41172851 | None:intergenic | 30.0% | |
| TCATAAGAAACTATAAGCTG+GGG | - | chr1_4:41173034-41173053 | None:intergenic | 30.0% | |
| GTCATAAGAAACTATAAGCT+GGG | - | chr1_4:41173035-41173054 | None:intergenic | 30.0% | |
| TGTCATAAGAAACTATAAGC+TGG | - | chr1_4:41173036-41173055 | None:intergenic | 30.0% | |
| ATTGCTTCCAAAATTACCTA+AGG | - | chr1_4:41173112-41173131 | None:intergenic | 30.0% | |
| TACATATCTAGAAGGTGAAT+GGG | - | chr1_4:41173153-41173172 | None:intergenic | 30.0% | |
| ATACATATCTAGAAGGTGAA+TGG | - | chr1_4:41173154-41173173 | None:intergenic | 30.0% | |
| AACTTATACAAGAACTTCAC+AGG | + | chr1_4:41173208-41173227 | Msa0163180:intron | 30.0% | |
| !! | GACATAACTAATGTTTTGGA+AGG | + | chr1_4:41173427-41173446 | Msa0163180:CDS | 30.0% |
| AATTCTTACATCAAACCTTG+TGG | + | chr1_4:41173582-41173601 | Msa0163180:intron | 30.0% | |
| CAGCAAATAGACATTATAGT+TGG | - | chr1_4:41173770-41173789 | None:intergenic | 30.0% | |
| AAAGGATAGTATCAATCTCT+TGG | + | chr1_4:41173875-41173894 | Msa0163180:intron | 30.0% | |
| AAGGATAGTATCAATCTCTT+GGG | + | chr1_4:41173876-41173895 | Msa0163180:intron | 30.0% | |
| TTTACTTAGAAACAATCCCA+GGG | - | chr1_4:41174208-41174227 | None:intergenic | 30.0% | |
| AACATTCTCCTCTAACATAT+GGG | - | chr1_4:41174431-41174450 | None:intergenic | 30.0% | |
| CCAATTAACAACATGTTACA+AGG | - | chr1_4:41174874-41174893 | None:intergenic | 30.0% | |
| CCTTGTAACATGTTGTTAAT+TGG | + | chr1_4:41174871-41174890 | Msa0163180:intron | 30.0% | |
| GATGATCAGATAAGGTTATA+TGG | + | chr1_4:41174961-41174980 | Msa0163180:intron | 30.0% | |
| ! | GGTTGCTTTATATCACAAAA+AGG | + | chr1_4:41174982-41175001 | Msa0163180:intron | 30.0% |
| ! | GCTTTTGAACCATTATTAAC+AGG | + | chr1_4:41175036-41175055 | Msa0163180:intron | 30.0% |
| TTGCATTTCCCTGTTAATAA+TGG | - | chr1_4:41175048-41175067 | None:intergenic | 30.0% | |
| ! | ACAATATTTTTCCTTCTGGA+AGG | - | chr1_4:41175155-41175174 | None:intergenic | 30.0% |
| AATCTCAATAACAGCATGAA+AGG | - | chr1_4:41175338-41175357 | None:intergenic | 30.0% | |
| TTAATGCTTCCATATGCATT+AGG | + | chr1_4:41175536-41175555 | Msa0163180:intron | 30.0% | |
| GGAGATATAGAATCATTCTA+AGG | + | chr1_4:41175577-41175596 | Msa0163180:CDS | 30.0% | |
| ! | TGTGTGTGTTACTAATATGT+AGG | - | chr1_4:41175660-41175679 | None:intergenic | 30.0% |
| ! | ATGCATTCTCCAGTTAATTT+TGG | + | chr1_4:41175748-41175767 | Msa0163180:intron | 30.0% |
| CTCTTCAAATTGACTGAAAA+CGG | - | chr1_4:41175784-41175803 | None:intergenic | 30.0% | |
| ! | TGTAGAATGATGCTGATTAT+TGG | + | chr1_4:41176198-41176217 | Msa0163180:intron | 30.0% |
| AAGTTAGCATAACAGATATG+TGG | + | chr1_4:41176237-41176256 | Msa0163180:CDS | 30.0% | |
| ! | TATTAGCCATATTTGAAGTG+TGG | + | chr1_4:41176838-41176857 | Msa0163180:three_prime_UTR | 30.0% |
| AGCAAAATGACAGAAAAAAC+GGG | - | chr1_4:41177055-41177074 | None:intergenic | 30.0% | |
| GAGCAAAATGACAGAAAAAA+CGG | - | chr1_4:41177056-41177075 | None:intergenic | 30.0% | |
| !!! | TGTCATTTTGCTCTATCTTT+GGG | + | chr1_4:41177063-41177082 | Msa0163180:three_prime_UTR | 30.0% |
| GCTTGAAATCATATAGCAAA+TGG | - | chr1_4:41177157-41177176 | None:intergenic | 30.0% | |
| TGATTTCAAGCATATCTAAG+TGG | + | chr1_4:41177166-41177185 | Msa0163180:three_prime_UTR | 30.0% | |
| GATTTCAAGCATATCTAAGT+GGG | + | chr1_4:41177167-41177186 | Msa0163180:three_prime_UTR | 30.0% | |
| AGAGAGAAGAAAATGAGGAA+GGG | - | chr1_4:41171371-41171390 | None:intergenic | 35.0% | |
| AAGAGAGAAGAAAATGAGGA+AGG | - | chr1_4:41171372-41171391 | None:intergenic | 35.0% | |
| AGAGAAGAGAGAAGAAAATG+AGG | - | chr1_4:41171376-41171395 | None:intergenic | 35.0% | |
| AAATGATCGGAGAGAAATTG+GGG | - | chr1_4:41171440-41171459 | None:intergenic | 35.0% | |
| GAAAATGATCGGAGAGAAAT+TGG | - | chr1_4:41171442-41171461 | None:intergenic | 35.0% | |
| TTGAATTCAGATCCAGTGTT+CGG | - | chr1_4:41171983-41172002 | None:intergenic | 35.0% | |
| ! | AAAATTGGAGGGATTTTCTG+AGG | + | chr1_4:41172015-41172034 | Msa0163180:intron | 35.0% |
| CGGATACTATTGTTGTACAT+TGG | + | chr1_4:41172096-41172115 | Msa0163180:intron | 35.0% | |
| ATTAAGTCTAATGCTTGGCT+CGG | + | chr1_4:41172208-41172227 | Msa0163180:intron | 35.0% | |
| ! | AAAAATGTGTGGATTTTCGG+CGG | + | chr1_4:41172392-41172411 | Msa0163180:intron | 35.0% |
| CGGATAAGATTACTGTACAT+TGG | + | chr1_4:41172412-41172431 | Msa0163180:intron | 35.0% | |
| TTCATAAACTTTGAGTGCCT+TGG | + | chr1_4:41172496-41172515 | Msa0163180:intron | 35.0% | |
| TTCATAAGTGAGCATTACCA+AGG | - | chr1_4:41172516-41172535 | None:intergenic | 35.0% | |
| TTGATGTGTGTGTGTATCTT+TGG | + | chr1_4:41172689-41172708 | Msa0163180:intron | 35.0% | |
| AAAACTCCTTTGTCTGCAAA+AGG | + | chr1_4:41172862-41172881 | Msa0163180:CDS | 35.0% | |
| AAACTCCTTTGTCTGCAAAA+GGG | + | chr1_4:41172863-41172882 | Msa0163180:CDS | 35.0% | |
| ! | GACAGTTCCTTAGGTAATTT+TGG | + | chr1_4:41173102-41173121 | Msa0163180:intron | 35.0% |
| ! | CTCTTTTGCACCTATAGTAT+AGG | - | chr1_4:41173397-41173416 | None:intergenic | 35.0% |
| CTATACTATAGGTGCAAAAG+AGG | + | chr1_4:41173395-41173414 | Msa0163180:intron | 35.0% | |
| !!! | ACTAATGTTTTGGAAGGCAT+TGG | + | chr1_4:41173433-41173452 | Msa0163180:CDS | 35.0% |
| TGGTGATATCTCTTTGCTTA+AGG | + | chr1_4:41173645-41173664 | Msa0163180:CDS | 35.0% | |
| AATTAGTTCCAGGTGTCAAT+AGG | - | chr1_4:41173700-41173719 | None:intergenic | 35.0% | |
| TGGAAATGAATATACACGAG+CGG | - | chr1_4:41173750-41173769 | None:intergenic | 35.0% | |
| TTGCTGCACTCAACATTTAA+CGG | + | chr1_4:41173784-41173803 | Msa0163180:intron | 35.0% | |
| AGTATCAATCTCTTGGGATA+AGG | + | chr1_4:41173882-41173901 | Msa0163180:intron | 35.0% | |
| GTATCAATCTCTTGGGATAA+GGG | + | chr1_4:41173883-41173902 | Msa0163180:intron | 35.0% | |
| GTTTACTTAGAAACAATCCC+AGG | - | chr1_4:41174209-41174228 | None:intergenic | 35.0% | |
| AACTTGATTACTTTGTGGTC+TGG | - | chr1_4:41174286-41174305 | None:intergenic | 35.0% | |
| GCTCTAACTTGATTACTTTG+TGG | - | chr1_4:41174291-41174310 | None:intergenic | 35.0% | |
| GAACATTCTCCTCTAACATA+TGG | - | chr1_4:41174432-41174451 | None:intergenic | 35.0% | |
| AGCGTCAATATGTTGTGATA+AGG | + | chr1_4:41174587-41174606 | Msa0163180:intron | 35.0% | |
| AGAGACTAGATGATCAGATA+AGG | + | chr1_4:41174953-41174972 | Msa0163180:CDS | 35.0% | |
| ACTAAATGGGAGATTACTTC+TGG | - | chr1_4:41175106-41175125 | None:intergenic | 35.0% | |
| !! | ATATTTTTCCTTCTGGAAGG+AGG | - | chr1_4:41175152-41175171 | None:intergenic | 35.0% |
| GTCACAAAAAGGAACCTAAA+AGG | - | chr1_4:41175214-41175233 | None:intergenic | 35.0% | |
| ATCCTGAGGAAGTAAGTTTA+GGG | + | chr1_4:41175451-41175470 | Msa0163180:intron | 35.0% | |
| TTAGGGAATCAACTGATGAA+AGG | + | chr1_4:41175468-41175487 | Msa0163180:intron | 35.0% | |
| ! | CTAGTGTTTCTGATACATGA+TGG | + | chr1_4:41175509-41175528 | Msa0163180:intron | 35.0% |
| ! | AATCATTCTAAGGAGCACAA+TGG | + | chr1_4:41175587-41175606 | Msa0163180:CDS | 35.0% |
| ! | ATCATTCTAAGGAGCACAAT+GGG | + | chr1_4:41175588-41175607 | Msa0163180:CDS | 35.0% |
| CTGATAAGGTAGACATCAAT+TGG | - | chr1_4:41175615-41175634 | None:intergenic | 35.0% | |
| CAATTGATGTCTACCTTATC+AGG | + | chr1_4:41175613-41175632 | Msa0163180:CDS | 35.0% | |
| GCAAGTAGTTATACCTGATA+AGG | - | chr1_4:41175629-41175648 | None:intergenic | 35.0% | |
| AATGTTTCACAAGAGTTTGC+TGG | + | chr1_4:41175966-41175985 | Msa0163180:CDS | 35.0% | |
| ! | ATGTTTCACAAGAGTTTGCT+GGG | + | chr1_4:41175967-41175986 | Msa0163180:CDS | 35.0% |
| TACTTACATCAGCATCTGAA+GGG | - | chr1_4:41176010-41176029 | None:intergenic | 35.0% | |
| ATACTTACATCAGCATCTGA+AGG | - | chr1_4:41176011-41176030 | None:intergenic | 35.0% | |
| ! | TAAGTATATCACAGCCTTGT+AGG | + | chr1_4:41176024-41176043 | Msa0163180:intron | 35.0% |
| ! | AAGTATATCACAGCCTTGTA+GGG | + | chr1_4:41176025-41176044 | Msa0163180:intron | 35.0% |
| ATCAACATTAGCTGTTATGC+TGG | - | chr1_4:41176369-41176388 | None:intergenic | 35.0% | |
| GCATAACAGCTAATGTTGAT+TGG | + | chr1_4:41176369-41176388 | Msa0163180:intron | 35.0% | |
| GTTATCATCCTCTGTATTGA+GGG | + | chr1_4:41176540-41176559 | Msa0163180:three_prime_UTR | 35.0% | |
| TTATCATCCTCTGTATTGAG+GGG | + | chr1_4:41176541-41176560 | Msa0163180:three_prime_UTR | 35.0% | |
| TAGTAGACATACTAAGCTTG+TGG | + | chr1_4:41176699-41176718 | Msa0163180:three_prime_UTR | 35.0% | |
| ACTATGCCACACTTCAAATA+TGG | - | chr1_4:41176847-41176866 | None:intergenic | 35.0% | |
| ! | ATATTTGAAGTGTGGCATAG+TGG | + | chr1_4:41176846-41176865 | Msa0163180:three_prime_UTR | 35.0% |
| ! | TATTTGAAGTGTGGCATAGT+GGG | + | chr1_4:41176847-41176866 | Msa0163180:three_prime_UTR | 35.0% |
| AGAAAAAACGGGAGTAGTTT+GGG | - | chr1_4:41177044-41177063 | None:intergenic | 35.0% | |
| !!! | CTGTCATTTTGCTCTATCTT+TGG | + | chr1_4:41177062-41177081 | Msa0163180:three_prime_UTR | 35.0% |
| TTGTTTCGGATAGATGTGGA+GGG | - | chr1_4:41171328-41171347 | None:intergenic | 40.0% | |
| TTTGTTTCGGATAGATGTGG+AGG | - | chr1_4:41171329-41171348 | None:intergenic | 40.0% | |
| !! | GAAGGGAGGGAATTTTGTTT+CGG | - | chr1_4:41171342-41171361 | None:intergenic | 40.0% |
| AGAAGAAAATGAGGAAGGGA+GGG | - | chr1_4:41171367-41171386 | None:intergenic | 40.0% | |
| !!! | GGTTTTAGAGAGAGAAAGTG+GGG | - | chr1_4:41171408-41171427 | None:intergenic | 40.0% |
| !!! | GGGTTTTAGAGAGAGAAAGT+GGG | - | chr1_4:41171409-41171428 | None:intergenic | 40.0% |
| !!! | AGGGTTTTAGAGAGAGAAAG+TGG | - | chr1_4:41171410-41171429 | None:intergenic | 40.0% |
| AATGATCGGAGAGAAATTGG+GGG | - | chr1_4:41171439-41171458 | None:intergenic | 40.0% | |
| AACGGCTTCATTGACATGAT+CGG | - | chr1_4:41171666-41171685 | None:intergenic | 40.0% | |
| AGCCGTTATTGTTAGATCTC+CGG | + | chr1_4:41171679-41171698 | Msa0163180:CDS | 40.0% | |
| CACCGGAGATCTAACAATAA+CGG | - | chr1_4:41171684-41171703 | None:intergenic | 40.0% | |
| GACTAAAACGAAGAACACAC+CGG | - | chr1_4:41171701-41171720 | None:intergenic | 40.0% | |
| CACTGGATCTGAATTCAACT+TGG | + | chr1_4:41171985-41172004 | Msa0163180:intron | 40.0% | |
| ! | TGTGTCGAAAACATTTTCGG+CGG | + | chr1_4:41172076-41172095 | Msa0163180:intron | 40.0% |
| CGAGTGTGTGTTTGTTTGAT+AGG | + | chr1_4:41172177-41172196 | Msa0163180:intron | 40.0% | |
| !!! | AGCACTGACACTTTTACCAA+AGG | + | chr1_4:41172232-41172251 | Msa0163180:intron | 40.0% |
| !! | GTATCTATGAAGCACTGACA+CGG | - | chr1_4:41172357-41172376 | None:intergenic | 40.0% |
| GTCAGTGCTTCATAGATACT+TGG | + | chr1_4:41172358-41172377 | Msa0163180:intron | 40.0% | |
| !! | ATGAACATGTTGGTGGTGTA+AGG | + | chr1_4:41172744-41172763 | Msa0163180:intron | 40.0% |
| AAGGTCATAAAGCGGAAGAA+TGG | + | chr1_4:41172763-41172782 | Msa0163180:intron | 40.0% | |
| !!! | CAGACAAAGGAGTTTTGAAG+GGG | - | chr1_4:41172858-41172877 | None:intergenic | 40.0% |
| !!! | GCAGACAAAGGAGTTTTGAA+GGG | - | chr1_4:41172859-41172878 | None:intergenic | 40.0% |
| !! | TGCAGACAAAGGAGTTTTGA+AGG | - | chr1_4:41172860-41172879 | None:intergenic | 40.0% |
| AACTCCTTTGTCTGCAAAAG+GGG | + | chr1_4:41172864-41172883 | Msa0163180:CDS | 40.0% | |
| ! | AGGACATGATTTGCCTTCTT+TGG | - | chr1_4:41172914-41172933 | None:intergenic | 40.0% |
| ! | TTCTGACCAGCATTTGAGAT+AGG | - | chr1_4:41172943-41172962 | None:intergenic | 40.0% |
| TGTCGTTATGACAGTTCCTT+AGG | + | chr1_4:41173093-41173112 | Msa0163180:CDS | 40.0% | |
| TAAAGCAGCAGAAACTTTGC+AGG | + | chr1_4:41173294-41173313 | Msa0163180:CDS | 40.0% | |
| TACTATAGGTGCAAAAGAGG+AGG | + | chr1_4:41173398-41173417 | Msa0163180:intron | 40.0% | |
| ATATCACCATCCACATTACC+AGG | - | chr1_4:41173634-41173653 | None:intergenic | 40.0% | |
| !! | AGAAGCACTAGAAACTCCAT+AGG | + | chr1_4:41173966-41173985 | Msa0163180:intron | 40.0% |
| CTCAAACTTTCTCTCTCCTA+TGG | - | chr1_4:41173985-41174004 | None:intergenic | 40.0% | |
| TGAGCTAGTGATGGTTATTC+AGG | - | chr1_4:41174042-41174061 | None:intergenic | 40.0% | |
| ! | TCAAGGCTTTTCTGTCTCAA+TGG | + | chr1_4:41174069-41174088 | Msa0163180:intron | 40.0% |
| ! | CAAGGCTTTTCTGTCTCAAT+GGG | + | chr1_4:41174070-41174089 | Msa0163180:intron | 40.0% |
| ! | AAGGCTTTTCTGTCTCAATG+GGG | + | chr1_4:41174071-41174090 | Msa0163180:intron | 40.0% |
| TACATTACCTCCTCAAGCTT+AGG | + | chr1_4:41174161-41174180 | Msa0163180:intron | 40.0% | |
| ACATTACCTCCTCAAGCTTA+GGG | + | chr1_4:41174162-41174181 | Msa0163180:intron | 40.0% | |
| CAGAAACATTGAGTAGACAG+AGG | + | chr1_4:41174228-41174247 | Msa0163180:intron | 40.0% | |
| ATTACTTTGTGGTCTGGCAT+TGG | - | chr1_4:41174280-41174299 | None:intergenic | 40.0% | |
| !! | CCAAGTTTTATCAAGTACCC+TGG | - | chr1_4:41174518-41174537 | None:intergenic | 40.0% |
| ! | CCAGGGTACTTGATAAAACT+TGG | + | chr1_4:41174515-41174534 | Msa0163180:intron | 40.0% |
| ! | TTAGAGGCACATGTATGCAA+AGG | + | chr1_4:41174725-41174744 | Msa0163180:intron | 40.0% |
| GAATTATGTTGTCAGCCTTG+TGG | + | chr1_4:41174832-41174851 | Msa0163180:intron | 40.0% | |
| !! | AGTTCTAAGTCAAAGCCACA+AGG | - | chr1_4:41174850-41174869 | None:intergenic | 40.0% |
| ACATGTTGTTAATTGGCTGC+TGG | + | chr1_4:41174878-41174897 | Msa0163180:intron | 40.0% | |
| TATCTTCCTCGGTCACAAAA+AGG | - | chr1_4:41175225-41175244 | None:intergenic | 40.0% | |
| TGTGACCGAGGAAGATATTA+AGG | + | chr1_4:41175228-41175247 | Msa0163180:CDS | 40.0% | |
| GTGACCGAGGAAGATATTAA+GGG | + | chr1_4:41175229-41175248 | Msa0163180:CDS | 40.0% | |
| TAGGCCCTTAATATCTTCCT+CGG | - | chr1_4:41175236-41175255 | None:intergenic | 40.0% | |
| GCAAAAACAAAGAACTCACC+TGG | - | chr1_4:41175267-41175286 | None:intergenic | 40.0% | |
| AAACTTACTTCCTCAGGATC+AGG | - | chr1_4:41175450-41175469 | None:intergenic | 40.0% | |
| GATCCTGAGGAAGTAAGTTT+AGG | + | chr1_4:41175450-41175469 | Msa0163180:intron | 40.0% | |
| TTCCCTAAACTTACTTCCTC+AGG | - | chr1_4:41175456-41175475 | None:intergenic | 40.0% | |
| ! | TTACCTCTTGCTTCAAGTTC+AGG | + | chr1_4:41175843-41175862 | Msa0163180:CDS | 40.0% |
| ! | TACCTCTTGCTTCAAGTTCA+GGG | + | chr1_4:41175844-41175863 | Msa0163180:CDS | 40.0% |
| TGAGCAACAAGTGACAGAAA+TGG | + | chr1_4:41175872-41175891 | Msa0163180:CDS | 40.0% | |
| !! | TGTTTCACAAGAGTTTGCTG+GGG | + | chr1_4:41175968-41175987 | Msa0163180:CDS | 40.0% |
| ! | CACTTCATACTGGGGATTTT+GGG | + | chr1_4:41176057-41176076 | Msa0163180:intron | 40.0% |
| TTGATTAAACGCTTCGGATG+TGG | + | chr1_4:41176104-41176123 | Msa0163180:intron | 40.0% | |
| TAGCTGTTATGCTGGAGTTA+AGG | - | chr1_4:41176361-41176380 | None:intergenic | 40.0% | |
| ! | ACAGCTAATGTTGATTGGAG+TGG | + | chr1_4:41176374-41176393 | Msa0163180:intron | 40.0% |
| ! | TAATGTTGATTGGAGTGGAG+TGG | + | chr1_4:41176379-41176398 | Msa0163180:CDS | 40.0% |
| GGTTATCATCCTCTGTATTG+AGG | + | chr1_4:41176539-41176558 | Msa0163180:three_prime_UTR | 40.0% | |
| !! | AGTAAATCACCGACTCTCTT+AGG | + | chr1_4:41176663-41176682 | Msa0163180:three_prime_UTR | 40.0% |
| TCGTTTATGCCTAAGAGAGT+CGG | - | chr1_4:41176675-41176694 | None:intergenic | 40.0% | |
| TGCTACTGCATGAAATGCAA+AGG | + | chr1_4:41176776-41176795 | Msa0163180:three_prime_UTR | 40.0% | |
| ACTGCATGAAATGCAAAGGT+AGG | + | chr1_4:41176780-41176799 | Msa0163180:three_prime_UTR | 40.0% | |
| CGACGATCAGTATTTGTATC+TGG | + | chr1_4:41176809-41176828 | Msa0163180:three_prime_UTR | 40.0% | |
| ! | GCAGCTTCTCCTTTTCAAAA+AGG | - | chr1_4:41176884-41176903 | None:intergenic | 40.0% |
| CAGAAAAAACGGGAGTAGTT+TGG | - | chr1_4:41177045-41177064 | None:intergenic | 40.0% | |
| !! | GATAGTTTCGAAAGCATCTG+AGG | + | chr1_4:41177125-41177144 | Msa0163180:three_prime_UTR | 40.0% |
| !! | TTTCGAAAGCATCTGAGGAT+GGG | + | chr1_4:41177130-41177149 | Msa0163180:three_prime_UTR | 40.0% |
| AGCATATCTAAGTGGGAACA+AGG | + | chr1_4:41177174-41177193 | Msa0163180:three_prime_UTR | 40.0% | |
| GAGAAGAAAATGAGGAAGGG+AGG | - | chr1_4:41171368-41171387 | None:intergenic | 45.0% | |
| GAGAAATTGGGGGAGAAGTA+GGG | - | chr1_4:41171429-41171448 | None:intergenic | 45.0% | |
| AGAGAAATTGGGGGAGAAGT+AGG | - | chr1_4:41171430-41171449 | None:intergenic | 45.0% | |
| AATCGGAGTGGAAACGGAAA+TGG | - | chr1_4:41171464-41171483 | None:intergenic | 45.0% | |
| TTACGGTTACGGTGGAGAAT+CGG | - | chr1_4:41171481-41171500 | None:intergenic | 45.0% | |
| GTTACCGGACATTACGGTTA+CGG | - | chr1_4:41171492-41171511 | None:intergenic | 45.0% | |
| TACTCATCAGTCGGTGCAAA+CGG | - | chr1_4:41171608-41171627 | None:intergenic | 45.0% | |
| !! | CTTTCGCTGCTGTTGATTCT+AGG | + | chr1_4:41171633-41171652 | Msa0163180:CDS | 45.0% |
| !! | ACTTTTACCAAAGGCGTGTC+TGG | + | chr1_4:41172241-41172260 | Msa0163180:intron | 45.0% |
| GGTGGTGTAAGGTCATAAAG+CGG | + | chr1_4:41172755-41172774 | Msa0163180:intron | 45.0% | |
| CAAAAGTCAAGTAACAGCCC+TGG | + | chr1_4:41172811-41172830 | Msa0163180:CDS | 45.0% | |
| ACTCCTTTGTCTGCAAAAGG+GGG | + | chr1_4:41172865-41172884 | Msa0163180:CDS | 45.0% | |
| TTTGTCTGCAAAAGGGGGAA+GGG | + | chr1_4:41172870-41172889 | Msa0163180:CDS | 45.0% | |
| !! | AAGTCAAGGGCATCCAAAGA+AGG | + | chr1_4:41172898-41172917 | Msa0163180:CDS | 45.0% |
| !! | GCATTTGAGATAGGTGTTGG+AGG | - | chr1_4:41172934-41172953 | None:intergenic | 45.0% |
| ! | CCAGCATTTGAGATAGGTGT+TGG | - | chr1_4:41172937-41172956 | None:intergenic | 45.0% |
| CCAACACCTATCTCAAATGC+TGG | + | chr1_4:41172934-41172953 | Msa0163180:CDS | 45.0% | |
| CTATAAGCTGGGGTACAACA+AGG | - | chr1_4:41173024-41173043 | None:intergenic | 45.0% | |
| GGAATTGAATCTTCTACGCC+TGG | + | chr1_4:41173613-41173632 | Msa0163180:CDS | 45.0% | |
| ! | ATCTTCTACGCCTGGTAATG+TGG | + | chr1_4:41173621-41173640 | Msa0163180:CDS | 45.0% |
| TCTTGAGACCTATTGACACC+TGG | + | chr1_4:41173689-41173708 | Msa0163180:intron | 45.0% | |
| GCACTCAACATTTAACGGCT+CGG | + | chr1_4:41173789-41173808 | Msa0163180:intron | 45.0% | |
| TAACCATCACTAGCTCACTG+AGG | + | chr1_4:41174045-41174064 | Msa0163180:intron | 45.0% | |
| ACGGCTGTCATCAATGTTTG+AGG | + | chr1_4:41174339-41174358 | Msa0163180:intron | 45.0% | |
| AGGTCTTCTGTGATGCTGAT+TGG | - | chr1_4:41174366-41174385 | None:intergenic | 45.0% | |
| CAGAAGACCTGCAAAGTGAA+CGG | + | chr1_4:41174376-41174395 | Msa0163180:intron | 45.0% | |
| AGAAGACCTGCAAAGTGAAC+GGG | + | chr1_4:41174377-41174396 | Msa0163180:intron | 45.0% | |
| AGCAGAAGCCCATATGTTAG+AGG | + | chr1_4:41174420-41174439 | Msa0163180:intron | 45.0% | |
| TAACCCGAAGATCAGTACCA+GGG | + | chr1_4:41174498-41174517 | Msa0163180:intron | 45.0% | |
| !! | AGTACCCTGGTACTGATCTT+CGG | - | chr1_4:41174505-41174524 | None:intergenic | 45.0% |
| GCATGGGGATTATGTGAGAT+GGG | - | chr1_4:41174541-41174560 | None:intergenic | 45.0% | |
| AGCATGGGGATTATGTGAGA+TGG | - | chr1_4:41174542-41174561 | None:intergenic | 45.0% | |
| TTTCCCTCATGTTGGAGCAT+GGG | - | chr1_4:41174557-41174576 | None:intergenic | 45.0% | |
| CCTCTTTCTTTCCCTCATGT+TGG | - | chr1_4:41174565-41174584 | None:intergenic | 45.0% | |
| CCAACATGAGGGAAAGAAAG+AGG | + | chr1_4:41174562-41174581 | Msa0163180:intron | 45.0% | |
| !! | TTGTGGCTTTGTCTTGCAGT+CGG | + | chr1_4:41174903-41174922 | Msa0163180:intron | 45.0% |
| GGAAGTTGACAACCTTTCTC+TGG | + | chr1_4:41174924-41174943 | Msa0163180:CDS | 45.0% | |
| ! | TAGGTTCCTTTTTGTGACCG+AGG | + | chr1_4:41175216-41175235 | Msa0163180:intron | 45.0% |
| AAAGAACTCACCTGGAAGCA+AGG | - | chr1_4:41175259-41175278 | None:intergenic | 45.0% | |
| ATAGCAATCAAAGCTCCGCA+TGG | + | chr1_4:41175408-41175427 | Msa0163180:CDS | 45.0% | |
| TGAAGCAAGAGGTAAGCTTG+CGG | - | chr1_4:41175838-41175857 | None:intergenic | 45.0% | |
| !! | GTTTCACAAGAGTTTGCTGG+GGG | + | chr1_4:41175969-41175988 | Msa0163180:CDS | 45.0% |
| AATCCCCAGTATGAAGTGGA+GGG | - | chr1_4:41176055-41176074 | None:intergenic | 45.0% | |
| AAATCCCCAGTATGAAGTGG+AGG | - | chr1_4:41176056-41176075 | None:intergenic | 45.0% | |
| CCAAAATCCCCAGTATGAAG+TGG | - | chr1_4:41176059-41176078 | None:intergenic | 45.0% | |
| ! | CCACTTCATACTGGGGATTT+TGG | + | chr1_4:41176056-41176075 | Msa0163180:intron | 45.0% |
| !! | CTCGAGAGCATTTCAAAGTC+AGG | - | chr1_4:41176416-41176435 | None:intergenic | 45.0% |
| !! | CTGACTTTGAAATGCTCTCG+AGG | + | chr1_4:41176414-41176433 | Msa0163180:CDS | 45.0% |
| !! | TTAGGGTTAGCTACAGTCGA+TGG | - | chr1_4:41176473-41176492 | None:intergenic | 45.0% |
| !! | AGCTAGCCTTGTGAATGTTG+AGG | + | chr1_4:41176589-41176608 | Msa0163180:three_prime_UTR | 45.0% |
| CAGCATCCTCAACATTCACA+AGG | - | chr1_4:41176598-41176617 | None:intergenic | 45.0% | |
| TGAATGTTGAGGATGCTGTG+AGG | + | chr1_4:41176600-41176619 | Msa0163180:three_prime_UTR | 45.0% | |
| CTGACCCCAAACAACTTCAA+GGG | + | chr1_4:41176914-41176933 | Msa0163180:three_prime_UTR | 45.0% | |
| TGCACCCTTGAAGTTGTTTG+GGG | - | chr1_4:41176921-41176940 | None:intergenic | 45.0% | |
| GTGCACCCTTGAAGTTGTTT+GGG | - | chr1_4:41176922-41176941 | None:intergenic | 45.0% | |
| AGTGCACCCTTGAAGTTGTT+TGG | - | chr1_4:41176923-41176942 | None:intergenic | 45.0% | |
| ! | AAACAACTTCAAGGGTGCAC+TGG | + | chr1_4:41176922-41176941 | Msa0163180:three_prime_UTR | 45.0% |
| AGGGTGCACTGGATATTGTT+AGG | + | chr1_4:41176933-41176952 | Msa0163180:three_prime_UTR | 45.0% | |
| GCACTGGATATTGTTAGGAC+AGG | + | chr1_4:41176938-41176957 | Msa0163180:three_prime_UTR | 45.0% | |
| TGTGTAAGCCTTCGTGCAAT+AGG | - | chr1_4:41177092-41177111 | None:intergenic | 45.0% | |
| !! | GTTTCGAAAGCATCTGAGGA+TGG | + | chr1_4:41177129-41177148 | Msa0163180:three_prime_UTR | 45.0% |
| !!! | ATTTTTTATTTTTATTTTTG+TGG | + | chr1_4:41171825-41171844 | Msa0163180:intron | 5.0% |
| ATGAGGAAGGGAGGGAAGAA+GGG | - | chr1_4:41171359-41171378 | None:intergenic | 50.0% | |
| AATGAGGAAGGGAGGGAAGA+AGG | - | chr1_4:41171360-41171379 | None:intergenic | 50.0% | |
| GTGGAGAATCGGAGTGGAAA+CGG | - | chr1_4:41171470-41171489 | None:intergenic | 50.0% | |
| TCCACCGTAACCGTAATGTC+CGG | + | chr1_4:41171485-41171504 | Msa0163180:exon | 50.0% | |
| TCCAGCGTTACCGGACATTA+CGG | - | chr1_4:41171498-41171517 | None:intergenic | 50.0% | |
| AACGCCAGATGACGCTTCAA+CGG | - | chr1_4:41171569-41171588 | None:intergenic | 50.0% | |
| TCAAACACCAGACACGCCTT+TGG | - | chr1_4:41172251-41172270 | None:intergenic | 50.0% | |
| ! | CTTCCCCCTTTTGCAGACAA+AGG | - | chr1_4:41172871-41172890 | None:intergenic | 50.0% |
| CTTTGTCTGCAAAAGGGGGA+AGG | + | chr1_4:41172869-41172888 | Msa0163180:CDS | 50.0% | |
| GGGAAGGGCAAACAAGTCAA+GGG | + | chr1_4:41172885-41172904 | Msa0163180:CDS | 50.0% | |
| TCATAACGACAGCTACCAGC+AGG | - | chr1_4:41173084-41173103 | None:intergenic | 50.0% | |
| TCAAACCTTGTGGCATGCAG+AGG | + | chr1_4:41173592-41173611 | Msa0163180:intron | 50.0% | |
| CAATTCCTCTGCATGCCACA+AGG | - | chr1_4:41173600-41173619 | None:intergenic | 50.0% | |
| ! | TCTACGCCTGGTAATGTGGA+TGG | + | chr1_4:41173625-41173644 | Msa0163180:CDS | 50.0% |
| ! | TTAACGGCTCGGACTCTTGT+TGG | + | chr1_4:41173800-41173819 | Msa0163180:intron | 50.0% |
| TTACCTCCTCAAGCTTAGGG+TGG | + | chr1_4:41174165-41174184 | Msa0163180:intron | 50.0% | |
| TCTGCGGCATGCGTTTGTAT+TGG | - | chr1_4:41174313-41174332 | None:intergenic | 50.0% | |
| TGACAGCCGTTCTACTTCTG+CGG | - | chr1_4:41174329-41174348 | None:intergenic | 50.0% | |
| CTATGACCCGTTCACTTTGC+AGG | - | chr1_4:41174386-41174405 | None:intergenic | 50.0% | |
| CTGCAAAGTGAACGGGTCAT+AGG | + | chr1_4:41174384-41174403 | Msa0163180:intron | 50.0% | |
| !! | GGTACTGATCTTCGGGTTAG+TGG | - | chr1_4:41174497-41174516 | None:intergenic | 50.0% |
| CTAACCCGAAGATCAGTACC+AGG | + | chr1_4:41174497-41174516 | Msa0163180:intron | 50.0% | |
| !! | GTACCCTGGTACTGATCTTC+GGG | - | chr1_4:41174504-41174523 | None:intergenic | 50.0% |
| AATCCCCATGCTCCAACATG+AGG | + | chr1_4:41174550-41174569 | Msa0163180:intron | 50.0% | |
| ATCCCCATGCTCCAACATGA+GGG | + | chr1_4:41174551-41174570 | Msa0163180:intron | 50.0% | |
| TTCCCTCATGTTGGAGCATG+GGG | - | chr1_4:41174556-41174575 | None:intergenic | 50.0% | |
| CTTTCCCTCATGTTGGAGCA+TGG | - | chr1_4:41174558-41174577 | None:intergenic | 50.0% | |
| !! | TTAATTGGCTGCTGGCCTTG+TGG | + | chr1_4:41174886-41174905 | Msa0163180:intron | 50.0% |
| GACTGCAAGACAAAGCCACA+AGG | - | chr1_4:41174904-41174923 | None:intergenic | 50.0% | |
| GTCTCTGCTCTTCCAGAGAA+AGG | - | chr1_4:41174939-41174958 | None:intergenic | 50.0% | |
| TGCTTTGTCCTCCTTCCAGA+AGG | + | chr1_4:41175141-41175160 | Msa0163180:intron | 50.0% | |
| AACTCACCTGGAAGCAAGGT+AGG | - | chr1_4:41175255-41175274 | None:intergenic | 50.0% | |
| ACTTCCAAGGTGGTTCCATG+CGG | - | chr1_4:41175426-41175445 | None:intergenic | 50.0% | |
| AGGATCAGGAACTTCCAAGG+TGG | - | chr1_4:41175436-41175455 | None:intergenic | 50.0% | |
| CTCAGGATCAGGAACTTCCA+AGG | - | chr1_4:41175439-41175458 | None:intergenic | 50.0% | |
| CTTGGAAGTTCCTGATCCTG+AGG | + | chr1_4:41175437-41175456 | Msa0163180:CDS | 50.0% | |
| CGTCAACGGCCTAATGCATA+TGG | - | chr1_4:41175548-41175567 | None:intergenic | 50.0% | |
| TCTCCGCTGTAGTTCGTCAA+CGG | - | chr1_4:41175562-41175581 | None:intergenic | 50.0% | |
| AAGCAAGAGGTAAGCTTGCG+GGG | - | chr1_4:41175836-41175855 | None:intergenic | 50.0% | |
| GAAGCAAGAGGTAAGCTTGC+GGG | - | chr1_4:41175837-41175856 | None:intergenic | 50.0% | |
| GACCCTGAACTTGAAGCAAG+AGG | - | chr1_4:41175849-41175868 | None:intergenic | 50.0% | |
| ATGGTACCTGCTGAATGCAG+TGG | + | chr1_4:41175891-41175910 | Msa0163180:CDS | 50.0% | |
| ACCTGCTGAATGCAGTGGAA+AGG | + | chr1_4:41175896-41175915 | Msa0163180:CDS | 50.0% | |
| TCCTTTCCACTGCATTCAGC+AGG | - | chr1_4:41175900-41175919 | None:intergenic | 50.0% | |
| TGAGAAGAGAGCAGAGCTTG+AGG | - | chr1_4:41175930-41175949 | None:intergenic | 50.0% | |
| TTCCCCCTCCACTTCATACT+GGG | + | chr1_4:41176048-41176067 | Msa0163180:intron | 50.0% | |
| ATCCCCAGTATGAAGTGGAG+GGG | - | chr1_4:41176054-41176073 | None:intergenic | 50.0% | |
| GTAGCTTCCCCTCAATACAG+AGG | - | chr1_4:41176551-41176570 | None:intergenic | 50.0% | |
| GCTGACCCCAAACAACTTCA+AGG | + | chr1_4:41176913-41176932 | Msa0163180:three_prime_UTR | 50.0% | |
| TTGGGATGCCTATTGCACGA+AGG | + | chr1_4:41177081-41177100 | Msa0163180:three_prime_UTR | 50.0% | |
| ACTGCTGTGTTGCGTAGTCA+GGG | + | chr1_4:41177215-41177234 | Msa0163180:three_prime_UTR | 50.0% | |
| GTTACGGTGGAGAATCGGAG+TGG | - | chr1_4:41171476-41171495 | None:intergenic | 55.0% | |
| ACCGGACATTACGGTTACGG+TGG | - | chr1_4:41171489-41171508 | None:intergenic | 55.0% | |
| ACCGTAATGTCCGGTAACGC+TGG | + | chr1_4:41171494-41171513 | Msa0163180:exon | 55.0% | |
| TCATCAGTCGGTGCAAACGG+TGG | - | chr1_4:41171605-41171624 | None:intergenic | 55.0% | |
| GGGGAAGGGCAAACAAGTCA+AGG | + | chr1_4:41172884-41172903 | Msa0163180:CDS | 55.0% | |
| CCTCAGCACGCTTGAGCAAA+TGG | - | chr1_4:41173255-41173274 | None:intergenic | 55.0% | |
| CCATTTGCTCAAGCGTGCTG+AGG | + | chr1_4:41173252-41173271 | Msa0163180:CDS | 55.0% | |
| TTGCTCAAGCGTGCTGAGGA+TGG | + | chr1_4:41173256-41173275 | Msa0163180:CDS | 55.0% | |
| GAGCCTCAGTGAGCTAGTGA+TGG | - | chr1_4:41174051-41174070 | None:intergenic | 55.0% | |
| CACTAGCTCACTGAGGCTCA+AGG | + | chr1_4:41174052-41174071 | Msa0163180:intron | 55.0% | |
| CAACCACCCTAAGCTTGAGG+AGG | - | chr1_4:41174171-41174190 | None:intergenic | 55.0% | |
| CCTCAACCACCCTAAGCTTG+AGG | - | chr1_4:41174174-41174193 | None:intergenic | 55.0% | |
| CCTCAAGCTTAGGGTGGTTG+AGG | + | chr1_4:41174171-41174190 | Msa0163180:intron | 55.0% | |
| GCTTAGGGTGGTTGAGGCAT+AGG | + | chr1_4:41174177-41174196 | Msa0163180:intron | 55.0% | |
| TTGAGGCATAGGCAGTACCC+TGG | + | chr1_4:41174188-41174207 | Msa0163180:intron | 55.0% | |
| TGAGGCATAGGCAGTACCCT+GGG | + | chr1_4:41174189-41174208 | Msa0163180:intron | 55.0% | |
| CGCATGCCGCAGAAGTAGAA+CGG | + | chr1_4:41174320-41174339 | Msa0163180:intron | 55.0% | |
| TAAGGGCCTACCTTGCTTCC+AGG | + | chr1_4:41175246-41175265 | Msa0163180:CDS | 55.0% | |
| AGGCCGTTGACGAACTACAG+CGG | + | chr1_4:41175556-41175575 | Msa0163180:intron | 55.0% | |
| AGCAAGAGGTAAGCTTGCGG+GGG | - | chr1_4:41175835-41175854 | None:intergenic | 55.0% | |
| GTTCCCCCTCCACTTCATAC+TGG | + | chr1_4:41176047-41176066 | Msa0163180:intron | 55.0% | |
| TCCCCCTCCACTTCATACTG+GGG | + | chr1_4:41176049-41176068 | Msa0163180:intron | 55.0% | |
| TCCCCAGTATGAAGTGGAGG+GGG | - | chr1_4:41176053-41176072 | None:intergenic | 55.0% | |
| AGTCCTGGCGATGGAGTTTG+TGG | - | chr1_4:41176440-41176459 | None:intergenic | 55.0% | |
| AACTCCATCGCCAGGACTTG+CGG | + | chr1_4:41176442-41176461 | Msa0163180:CDS | 55.0% | |
| CACTGCTGTGTTGCGTAGTC+AGG | + | chr1_4:41177214-41177233 | Msa0163180:three_prime_UTR | 55.0% | |
| GGAAGGGAGGGAAGAAGGGA+GGG | - | chr1_4:41171355-41171374 | None:intergenic | 60.0% | |
| AGGAAGGGAGGGAAGAAGGG+AGG | - | chr1_4:41171356-41171375 | None:intergenic | 60.0% | |
| GTCGGAAGGTCCAGCGTTAC+CGG | - | chr1_4:41171507-41171526 | None:intergenic | 60.0% | |
| ATCTGTGCTCCGGTCGGCAT+CGG | - | chr1_4:41171539-41171558 | None:intergenic | 60.0% | |
| TGCCGACCGGAGCACAGATT+CGG | + | chr1_4:41171540-41171559 | Msa0163180:CDS | 60.0% | |
| GCCAGATGACGCTTCAACGG+CGG | - | chr1_4:41171566-41171585 | None:intergenic | 60.0% | |
| AGTCGGTGCAAACGGTGGCT+TGG | - | chr1_4:41171600-41171619 | None:intergenic | 60.0% | |
| TGACACGGTCACGTCCACAC+CGG | - | chr1_4:41172342-41172361 | None:intergenic | 60.0% | |
| AGCAGGAGTGAGCGGAGAAG+GGG | - | chr1_4:41173067-41173086 | None:intergenic | 60.0% | |
| CAGCAGGAGTGAGCGGAGAA+GGG | - | chr1_4:41173068-41173087 | None:intergenic | 60.0% | |
| CAGCTACCAGCAGGAGTGAG+CGG | - | chr1_4:41173075-41173094 | None:intergenic | 60.0% | |
| AGCTCCGCATGGAACCACCT+TGG | + | chr1_4:41175419-41175438 | Msa0163180:CDS | 60.0% | |
| GCAAGAGGTAAGCTTGCGGG+GGG | - | chr1_4:41175834-41175853 | None:intergenic | 60.0% | |
| AGTGGAGGGGGAACCCTACA+AGG | - | chr1_4:41176041-41176060 | None:intergenic | 60.0% | |
| AGGCCACAAACTCCATCGCC+AGG | + | chr1_4:41176434-41176453 | Msa0163180:CDS | 60.0% | |
| GATGGTGCTTCCGCAAGTCC+TGG | - | chr1_4:41176455-41176474 | None:intergenic | 60.0% | |
| AACGCTGGACCTTCCGACCG+TGG | + | chr1_4:41171509-41171528 | Msa0163180:CDS | 65.0% | |
| GGCCGAATCTGTGCTCCGGT+CGG | - | chr1_4:41171545-41171564 | None:intergenic | 65.0% | |
| ! | GCCGCCGTTGAAGCGTCATC+TGG | + | chr1_4:41171562-41171581 | Msa0163180:CDS | 65.0% |
| CCAGCAGGAGTGAGCGGAGA+AGG | - | chr1_4:41173069-41173088 | None:intergenic | 65.0% | |
| CCTTCTCCGCTCACTCCTGC+TGG | + | chr1_4:41173066-41173085 | Msa0163180:CDS | 65.0% | |
| GCTTCCGCAAGTCCTGGCGA+TGG | - | chr1_4:41176449-41176468 | None:intergenic | 65.0% | |
| ATCGGCGAGCCACGGTCGGA+AGG | - | chr1_4:41171521-41171540 | None:intergenic | 70.0% | |
| CGGCGGCCGAATCTGTGCTC+CGG | - | chr1_4:41171549-41171568 | None:intergenic | 70.0% | |
| !! | CGGCATCGGCGAGCCACGGT+CGG | - | chr1_4:41171525-41171544 | None:intergenic | 75.0% |
| !! | CGGTCGGCATCGGCGAGCCA+CGG | - | chr1_4:41171529-41171548 | None:intergenic | 75.0% |
| CGTGGCTCGCCGATGCCGAC+CGG | + | chr1_4:41171527-41171546 | Msa0163180:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 41171308 | 41177253 | 41171308 | ID=Msa0163180;Name=Msa0163180 |
| chr1_4 | mRNA | 41171308 | 41177253 | 41171308 | ID=Msa0163180-mRNA-1;Parent=Msa0163180;Name=Msa0163180-mRNA-1;_AED=0.16;_eAED=0.16;_QI=192|1|1|1|1|1|14|751|464 |
| chr1_4 | exon | 41171308 | 41171700 | 41171308 | ID=Msa0163180-mRNA-1:exon:11795;Parent=Msa0163180-mRNA-1 |
| chr1_4 | exon | 41172766 | 41172955 | 41172766 | ID=Msa0163180-mRNA-1:exon:11796;Parent=Msa0163180-mRNA-1 |
| chr1_4 | exon | 41173061 | 41173114 | 41173061 | ID=Msa0163180-mRNA-1:exon:11797;Parent=Msa0163180-mRNA-1 |
| chr1_4 | exon | 41173230 | 41173315 | 41173230 | ID=Msa0163180-mRNA-1:exon:11798;Parent=Msa0163180-mRNA-1 |
| chr1_4 | exon | 41173406 | 41173494 | 41173406 | ID=Msa0163180-mRNA-1:exon:11799;Parent=Msa0163180-mRNA-1 |
| chr1_4 | exon | 41173612 | 41173666 | 41173612 | ID=Msa0163180-mRNA-1:exon:11800;Parent=Msa0163180-mRNA-1 |
| chr1_4 | exon | 41174922 | 41174974 | 41174922 | ID=Msa0163180-mRNA-1:exon:11801;Parent=Msa0163180-mRNA-1 |
| chr1_4 | exon | 41175058 | 41175108 | 41175058 | ID=Msa0163180-mRNA-1:exon:11802;Parent=Msa0163180-mRNA-1 |
| chr1_4 | exon | 41175219 | 41175267 | 41175219 | ID=Msa0163180-mRNA-1:exon:11803;Parent=Msa0163180-mRNA-1 |
| chr1_4 | exon | 41175396 | 41175461 | 41175396 | ID=Msa0163180-mRNA-1:exon:11804;Parent=Msa0163180-mRNA-1 |
| chr1_4 | exon | 41175558 | 41175634 | 41175558 | ID=Msa0163180-mRNA-1:exon:11805;Parent=Msa0163180-mRNA-1 |
| chr1_4 | exon | 41175791 | 41176022 | 41175791 | ID=Msa0163180-mRNA-1:exon:11806;Parent=Msa0163180-mRNA-1 |
| chr1_4 | exon | 41176203 | 41176269 | 41176203 | ID=Msa0163180-mRNA-1:exon:11807;Parent=Msa0163180-mRNA-1 |
| chr1_4 | exon | 41176378 | 41177253 | 41176378 | ID=Msa0163180-mRNA-1:exon:11808;Parent=Msa0163180-mRNA-1 |
| chr1_4 | five_prime_UTR | 41171308 | 41171499 | 41171308 | ID=Msa0163180-mRNA-1:five_prime_utr;Parent=Msa0163180-mRNA-1 |
| chr1_4 | CDS | 41171500 | 41171700 | 41171500 | ID=Msa0163180-mRNA-1:cds;Parent=Msa0163180-mRNA-1 |
| chr1_4 | CDS | 41172766 | 41172955 | 41172766 | ID=Msa0163180-mRNA-1:cds;Parent=Msa0163180-mRNA-1 |
| chr1_4 | CDS | 41173061 | 41173114 | 41173061 | ID=Msa0163180-mRNA-1:cds;Parent=Msa0163180-mRNA-1 |
| chr1_4 | CDS | 41173230 | 41173315 | 41173230 | ID=Msa0163180-mRNA-1:cds;Parent=Msa0163180-mRNA-1 |
| chr1_4 | CDS | 41173406 | 41173494 | 41173406 | ID=Msa0163180-mRNA-1:cds;Parent=Msa0163180-mRNA-1 |
| chr1_4 | CDS | 41173612 | 41173666 | 41173612 | ID=Msa0163180-mRNA-1:cds;Parent=Msa0163180-mRNA-1 |
| chr1_4 | CDS | 41174922 | 41174974 | 41174922 | ID=Msa0163180-mRNA-1:cds;Parent=Msa0163180-mRNA-1 |
| chr1_4 | CDS | 41175058 | 41175108 | 41175058 | ID=Msa0163180-mRNA-1:cds;Parent=Msa0163180-mRNA-1 |
| chr1_4 | CDS | 41175219 | 41175267 | 41175219 | ID=Msa0163180-mRNA-1:cds;Parent=Msa0163180-mRNA-1 |
| chr1_4 | CDS | 41175396 | 41175461 | 41175396 | ID=Msa0163180-mRNA-1:cds;Parent=Msa0163180-mRNA-1 |
| chr1_4 | CDS | 41175558 | 41175634 | 41175558 | ID=Msa0163180-mRNA-1:cds;Parent=Msa0163180-mRNA-1 |
| chr1_4 | CDS | 41175791 | 41176022 | 41175791 | ID=Msa0163180-mRNA-1:cds;Parent=Msa0163180-mRNA-1 |
| chr1_4 | CDS | 41176203 | 41176269 | 41176203 | ID=Msa0163180-mRNA-1:cds;Parent=Msa0163180-mRNA-1 |
| chr1_4 | CDS | 41176378 | 41176502 | 41176378 | ID=Msa0163180-mRNA-1:cds;Parent=Msa0163180-mRNA-1 |
| chr1_4 | three_prime_UTR | 41176503 | 41177253 | 41176503 | ID=Msa0163180-mRNA-1:three_prime_utr;Parent=Msa0163180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
