Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163320 | XP_024634118.1 | 96.716 | 335 | 6 | 2 | 1 | 335 | 1 | 330 | 0.0 | 672 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163320 | sp|Q9FNI3|Y5625_ARATH | 51.786 | 224 | 81 | 4 | 73 | 288 | 39 | 243 | 3.50e-63 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163320 | A0A396JQN5 | 96.716 | 335 | 6 | 2 | 1 | 335 | 1 | 330 | 0.0 | 672 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0163320 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024260 | Msa0163320 | 0.958881 | 7.822360e-117 | -8.615850e-47 |
| Msa0119930 | Msa0163320 | 0.940311 | 2.899348e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163320 | MtrunA17_Chr1g0178071 | 96.716 | 335 | 6 | 2 | 1 | 335 | 1 | 330 | 0.0 | 672 |
| Msa0163320 | MtrunA17_Chr7g0266821 | 52.647 | 340 | 101 | 12 | 6 | 333 | 11 | 302 | 1.91e-85 | 259 |
| Msa0163320 | MtrunA17_Chr8g0345771 | 70.796 | 113 | 29 | 2 | 75 | 185 | 167 | 277 | 3.88e-48 | 169 |
| Msa0163320 | MtrunA17_Chr7g0276471 | 69.725 | 109 | 29 | 2 | 79 | 185 | 117 | 223 | 4.97e-45 | 159 |
| Msa0163320 | MtrunA17_Chr5g0422501 | 66.087 | 115 | 33 | 1 | 76 | 184 | 232 | 346 | 1.52e-44 | 157 |
| Msa0163320 | MtrunA17_Chr1g0198661 | 61.157 | 121 | 36 | 2 | 76 | 185 | 188 | 308 | 1.44e-40 | 146 |
| Msa0163320 | MtrunA17_Chr1g0213701 | 50.467 | 107 | 43 | 2 | 68 | 169 | 145 | 246 | 1.55e-28 | 112 |
| Msa0163320 | MtrunA17_Chr5g0432721 | 36.296 | 135 | 65 | 6 | 58 | 185 | 302 | 422 | 3.26e-15 | 76.6 |
| Msa0163320 | MtrunA17_Chr4g0012861 | 35.338 | 133 | 66 | 6 | 58 | 183 | 295 | 414 | 4.46e-15 | 76.3 |
| Msa0163320 | MtrunA17_Chr3g0107701 | 35.758 | 165 | 81 | 9 | 58 | 211 | 319 | 469 | 1.96e-14 | 74.3 |
| Msa0163320 | MtrunA17_Chr2g0281191 | 36.667 | 120 | 62 | 5 | 66 | 183 | 345 | 452 | 2.64e-14 | 73.9 |
| Msa0163320 | MtrunA17_Chr7g0244871 | 41.758 | 91 | 46 | 3 | 79 | 167 | 12 | 97 | 6.09e-14 | 67.0 |
| Msa0163320 | MtrunA17_Chr8g0389081 | 38.053 | 113 | 64 | 3 | 71 | 183 | 130 | 236 | 1.23e-12 | 68.9 |
| Msa0163320 | MtrunA17_Chr3g0115271 | 35.897 | 117 | 69 | 4 | 69 | 183 | 105 | 217 | 8.41e-12 | 66.2 |
| Msa0163320 | MtrunA17_Chr1g0199681 | 31.293 | 147 | 81 | 4 | 75 | 220 | 188 | 315 | 1.21e-11 | 65.9 |
| Msa0163320 | MtrunA17_Chr2g0326761 | 36.697 | 109 | 66 | 2 | 75 | 183 | 103 | 208 | 1.74e-11 | 65.1 |
| Msa0163320 | MtrunA17_Chr4g0028971 | 32.432 | 148 | 83 | 4 | 75 | 217 | 104 | 239 | 2.12e-11 | 65.1 |
| Msa0163320 | MtrunA17_Chr4g0029671 | 30.178 | 169 | 112 | 3 | 72 | 240 | 158 | 320 | 4.30e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163320 | AT5G06250.5 | 51.786 | 224 | 81 | 4 | 73 | 288 | 39 | 243 | 2.47e-64 | 205 |
| Msa0163320 | AT5G06250.2 | 51.786 | 224 | 81 | 4 | 73 | 288 | 39 | 243 | 3.56e-64 | 205 |
| Msa0163320 | AT5G06250.4 | 52.727 | 220 | 77 | 4 | 73 | 284 | 39 | 239 | 5.51e-64 | 204 |
| Msa0163320 | AT3G11580.1 | 52.968 | 219 | 73 | 7 | 75 | 283 | 24 | 222 | 1.13e-61 | 198 |
| Msa0163320 | AT3G11580.3 | 52.968 | 219 | 73 | 7 | 75 | 283 | 24 | 222 | 1.56e-60 | 198 |
| Msa0163320 | AT5G06250.1 | 51.339 | 224 | 67 | 5 | 73 | 288 | 39 | 228 | 2.42e-60 | 194 |
| Msa0163320 | AT5G06250.3 | 51.786 | 224 | 66 | 5 | 73 | 288 | 39 | 228 | 3.43e-60 | 194 |
| Msa0163320 | AT2G36080.1 | 49.780 | 227 | 63 | 3 | 74 | 299 | 32 | 208 | 1.51e-58 | 189 |
| Msa0163320 | AT2G36080.3 | 49.561 | 228 | 64 | 3 | 74 | 300 | 32 | 209 | 1.70e-58 | 189 |
| Msa0163320 | AT3G11580.4 | 76.471 | 119 | 19 | 2 | 75 | 184 | 24 | 142 | 9.82e-58 | 186 |
| Msa0163320 | AT3G11580.2 | 76.471 | 119 | 19 | 2 | 75 | 184 | 24 | 142 | 9.82e-58 | 186 |
| Msa0163320 | AT3G11580.5 | 76.471 | 119 | 19 | 2 | 75 | 184 | 24 | 142 | 9.82e-58 | 186 |
| Msa0163320 | AT2G36080.4 | 78.571 | 112 | 23 | 1 | 74 | 184 | 32 | 143 | 1.61e-55 | 179 |
| Msa0163320 | AT2G36080.2 | 78.571 | 112 | 23 | 1 | 74 | 184 | 32 | 143 | 1.61e-55 | 179 |
| Msa0163320 | AT3G61970.1 | 43.805 | 226 | 91 | 6 | 75 | 283 | 18 | 224 | 6.09e-50 | 169 |
| Msa0163320 | AT2G46870.1 | 69.912 | 113 | 29 | 2 | 75 | 184 | 30 | 140 | 1.91e-47 | 162 |
| Msa0163320 | AT1G01030.2 | 43.882 | 237 | 100 | 11 | 69 | 283 | 45 | 270 | 2.15e-47 | 163 |
| Msa0163320 | AT1G68840.2 | 63.934 | 122 | 44 | 0 | 65 | 186 | 173 | 294 | 5.12e-46 | 160 |
| Msa0163320 | AT1G68840.1 | 63.934 | 122 | 44 | 0 | 65 | 186 | 173 | 294 | 5.12e-46 | 160 |
| Msa0163320 | AT1G13260.1 | 66.087 | 115 | 38 | 1 | 77 | 191 | 185 | 298 | 5.76e-46 | 159 |
| Msa0163320 | AT3G25730.1 | 62.097 | 124 | 45 | 2 | 77 | 198 | 180 | 303 | 4.63e-45 | 157 |
| Msa0163320 | AT1G01030.1 | 40.000 | 260 | 100 | 11 | 69 | 283 | 45 | 293 | 5.52e-44 | 155 |
| Msa0163320 | AT1G25560.1 | 59.375 | 128 | 46 | 1 | 76 | 197 | 191 | 318 | 2.13e-43 | 153 |
| Msa0163320 | AT4G01500.1 | 56.198 | 121 | 40 | 2 | 74 | 185 | 30 | 146 | 2.80e-37 | 136 |
| Msa0163320 | AT1G50680.1 | 50.000 | 98 | 40 | 1 | 79 | 167 | 156 | 253 | 1.93e-25 | 104 |
| Msa0163320 | AT1G51120.1 | 49.474 | 95 | 42 | 1 | 79 | 167 | 177 | 271 | 7.08e-25 | 103 |
| Msa0163320 | AT2G30470.1 | 35.766 | 137 | 76 | 5 | 79 | 210 | 294 | 423 | 2.80e-15 | 77.4 |
| Msa0163320 | AT4G32010.1 | 31.944 | 144 | 89 | 5 | 79 | 220 | 285 | 421 | 4.23e-14 | 73.6 |
| Msa0163320 | AT4G32010.2 | 31.944 | 144 | 89 | 5 | 79 | 220 | 281 | 417 | 4.54e-14 | 73.6 |
| Msa0163320 | AT1G77850.2 | 36.283 | 113 | 65 | 3 | 73 | 183 | 112 | 219 | 2.46e-12 | 68.2 |
| Msa0163320 | AT1G77850.1 | 36.283 | 113 | 65 | 3 | 73 | 183 | 112 | 219 | 2.52e-12 | 68.2 |
| Msa0163320 | AT1G35240.1 | 33.793 | 145 | 87 | 4 | 64 | 201 | 105 | 247 | 2.07e-11 | 65.5 |
| Msa0163320 | AT1G35520.1 | 33.103 | 145 | 88 | 4 | 64 | 201 | 105 | 247 | 2.74e-11 | 65.1 |
| Msa0163320 | AT1G34310.1 | 32.414 | 145 | 89 | 4 | 64 | 201 | 105 | 247 | 4.30e-11 | 64.3 |
Find 85 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGGTACTTAGGTTGTTT+GGG | 0.235789 | 1_4:-41338034 | Msa0163320:CDS |
| TCAAGGGTACTTAGGTTGTT+TGG | 0.238957 | 1_4:-41338035 | Msa0163320:CDS |
| TTCCCACCGGTTTCGTCCTT+TGG | 0.253544 | 1_4:+41338081 | None:intergenic |
| CGTCCTTTGGTTCTGACTTT+GGG | 0.260868 | 1_4:+41338094 | None:intergenic |
| TCTAGAGTACCTTGTGTTAA+TGG | 0.288145 | 1_4:+41337936 | None:intergenic |
| TATTAGTCGAACCAACTTCT+TGG | 0.317183 | 1_4:-41340730 | Msa0163320:CDS |
| GGCGTTTCCGTTACTCATAT+TGG | 0.359426 | 1_4:-41340412 | Msa0163320:CDS |
| TCGTCCTTTGGTTCTGACTT+TGG | 0.367217 | 1_4:+41338093 | None:intergenic |
| ACATATATCTAGTAGTAATA+TGG | 0.372904 | 1_4:+41337852 | None:intergenic |
| CCTACGTCAGAAGGTGTTAA+GGG | 0.377142 | 1_4:+41340557 | None:intergenic |
| GGTAAGAATGAGGTTGTTAA+TGG | 0.377492 | 1_4:-41340182 | Msa0163320:CDS |
| CTTCTAGTTCAAGGGTACTT+AGG | 0.380189 | 1_4:-41338043 | Msa0163320:CDS |
| CAAGTTCAACTTCTAGTTCA+AGG | 0.381802 | 1_4:-41338052 | Msa0163320:CDS |
| GGGTGAGAATTAGAATTAGA+AGG | 0.383626 | 1_4:+41337894 | None:intergenic |
| TCCTACGTCAGAAGGTGTTA+AGG | 0.388480 | 1_4:+41340556 | None:intergenic |
| AGAAGGTTGATGATATTGAT+AGG | 0.411150 | 1_4:+41337911 | None:intergenic |
| CAAAGCTATGTTCTAACAAA+AGG | 0.431965 | 1_4:-41340380 | Msa0163320:CDS |
| TGATGATGATGCGCAGGATA+AGG | 0.435593 | 1_4:+41340122 | None:intergenic |
| GGTGTTGAAGAATCATGTTC+AGG | 0.437272 | 1_4:+41337993 | None:intergenic |
| AATAAAACCCGAAGACGAAA+AGG | 0.463997 | 1_4:-41340597 | Msa0163320:CDS |
| TATGTACCATCCTTGAGGTT+GGG | 0.466712 | 1_4:-41337834 | Msa0163320:three_prime_UTR |
| TCAACTGGAGGAGGAGGAGT+GGG | 0.485693 | 1_4:-41340268 | Msa0163320:CDS |
| AAAGACAAACGACTCGATGC+TGG | 0.489099 | 1_4:-41340341 | Msa0163320:CDS |
| AATGAGGTTGTTAATGGTGT+AGG | 0.496825 | 1_4:-41340176 | Msa0163320:CDS |
| ACCATGGAGGTTGGTGGTGA+TGG | 0.501172 | 1_4:+41340702 | None:intergenic |
| TCAGAACCAAAGGACGAAAC+CGG | 0.504470 | 1_4:-41338087 | Msa0163320:CDS |
| ATCAACTGGAGGAGGAGGAG+TGG | 0.505623 | 1_4:-41340269 | Msa0163320:CDS |
| AGCAGAGGGGTGGGACATCA+TGG | 0.518191 | 1_4:-41340224 | Msa0163320:CDS |
| CATCATGGTAAAGGTAGTGA+TGG | 0.524393 | 1_4:-41340209 | Msa0163320:CDS |
| GAGGAGTGGGGATGATCAGT+CGG | 0.525500 | 1_4:-41340255 | Msa0163320:CDS |
| GCTATGTTCTAACAAAAGGT+TGG | 0.532394 | 1_4:-41340376 | Msa0163320:CDS |
| ATATGTACCATCCTTGAGGT+TGG | 0.536417 | 1_4:-41337835 | Msa0163320:three_prime_UTR |
| AAGTTCAACTTCTAGTTCAA+GGG | 0.539417 | 1_4:-41338051 | Msa0163320:CDS |
| AAGGGTACTTAGGTTGTTTG+GGG | 0.543731 | 1_4:-41338033 | Msa0163320:CDS |
| TAGTAAAAGTCCTTTGCACT+CGG | 0.550197 | 1_4:+41340463 | None:intergenic |
| ATGGTGTAGGGTGGTCCAGA+GGG | 0.553370 | 1_4:-41340163 | Msa0163320:CDS |
| AAGATGAGTCAGGGAAGTGT+TGG | 0.556819 | 1_4:-41340433 | Msa0163320:CDS |
| GAACTTGAACTCTTTCCCAC+CGG | 0.558795 | 1_4:+41338068 | None:intergenic |
| TCCATCACCACCAACCTCCA+TGG | 0.565376 | 1_4:-41340703 | Msa0163320:CDS |
| AATGGTGTAGGGTGGTCCAG+AGG | 0.566906 | 1_4:-41340164 | Msa0163320:CDS |
| GCGGAGTCTGCTCCGCCGAG+TGG | 0.567487 | 1_4:+41340485 | None:intergenic |
| CATGATCAATGTCTTCATGC+AGG | 0.570998 | 1_4:-41340083 | Msa0163320:intron |
| GCAGACTCCGCCGAGTGCAA+AGG | 0.576404 | 1_4:-41340473 | Msa0163320:CDS |
| TACTGTTCCAATATGAGTAA+CGG | 0.578342 | 1_4:+41340405 | None:intergenic |
| TTGAAGAATCATGTTCAGGT+TGG | 0.578477 | 1_4:+41337997 | None:intergenic |
| TAGGTTGTTTGGGGTCAACA+TGG | 0.578736 | 1_4:-41338024 | Msa0163320:CDS |
| ATGCGCAGAATAGAACCCTC+TGG | 0.580439 | 1_4:+41340148 | None:intergenic |
| GGCGTATGTTAGCAGAGGGG+TGG | 0.580643 | 1_4:-41340234 | Msa0163320:CDS |
| TGATGGAGAGACCAAGAAGT+TGG | 0.584201 | 1_4:+41340719 | None:intergenic |
| GCGTATGTTAGCAGAGGGGT+GGG | 0.587165 | 1_4:-41340233 | Msa0163320:CDS |
| GGGGTGGGACATCATGGTAA+AGG | 0.589571 | 1_4:-41340218 | Msa0163320:CDS |
| AGACATTGATCATGTTGGTA+TGG | 0.589887 | 1_4:+41340092 | None:intergenic |
| TTTCAGAAACATCACTCTGG+TGG | 0.596606 | 1_4:-41340796 | Msa0163320:CDS |
| ATGAGGTTGTTAATGGTGTA+GGG | 0.597680 | 1_4:-41340175 | Msa0163320:CDS |
| GAGAATTGAACCATGGAGGT+TGG | 0.598304 | 1_4:+41340693 | None:intergenic |
| AAGACTTGATGATGATGCGC+AGG | 0.600336 | 1_4:+41340116 | None:intergenic |
| GTTATAATGTTACAGGTAGA+GGG | 0.600635 | 1_4:-41338118 | Msa0163320:intron |
| TAACTTAGAACCCAACCTCA+AGG | 0.602951 | 1_4:+41337824 | None:intergenic |
| ATCATGGTAAAGGTAGTGAT+GGG | 0.605307 | 1_4:-41340208 | Msa0163320:CDS |
| TTACTATCATAAGAACATTG+AGG | 0.605601 | 1_4:+41337972 | None:intergenic |
| TGGATTTGAGAATTGAACCA+TGG | 0.606350 | 1_4:+41340686 | None:intergenic |
| TGATGGGAATGGTAAGAATG+AGG | 0.609090 | 1_4:-41340192 | Msa0163320:CDS |
| CATGAAGACATTGATCATGT+TGG | 0.609605 | 1_4:+41340087 | None:intergenic |
| ATCTTTCAGAAACATCACTC+TGG | 0.613066 | 1_4:-41340799 | Msa0163320:CDS |
| GGTCCCAAAGTCAGAACCAA+AGG | 0.613585 | 1_4:-41338097 | Msa0163320:CDS |
| GGTAAAGGTAGTGATGGGAA+TGG | 0.616121 | 1_4:-41340203 | Msa0163320:CDS |
| ATATCTAGTAGTAATATGGT+TGG | 0.616517 | 1_4:+41337856 | None:intergenic |
| TTAGAACCCAACCTCAAGGA+TGG | 0.619157 | 1_4:+41337828 | None:intergenic |
| AGTCGGCGTATGTTAGCAGA+GGG | 0.627715 | 1_4:-41340238 | Msa0163320:CDS |
| GAACCAAAGGACGAAACCGG+TGG | 0.630994 | 1_4:-41338084 | Msa0163320:CDS |
| CAGTCGGCGTATGTTAGCAG+AGG | 0.631740 | 1_4:-41340239 | Msa0163320:CDS |
| CCCTTAACACCTTCTGACGT+AGG | 0.645250 | 1_4:-41340557 | Msa0163320:CDS |
| AACCAAAGGACGAAACCGGT+GGG | 0.646214 | 1_4:-41338083 | Msa0163320:CDS |
| TAAAAGTCCTTTGCACTCGG+CGG | 0.651002 | 1_4:+41340466 | None:intergenic |
| AGATATATGTACCATCCTTG+AGG | 0.651399 | 1_4:-41337839 | Msa0163320:three_prime_UTR |
| CAACTGGAGGAGGAGGAGTG+GGG | 0.652199 | 1_4:-41340267 | Msa0163320:CDS |
| GGTTGGTGACGTACCACGTG+AGG | 0.657771 | 1_4:+41337873 | None:intergenic |
| AATTGAACCATGGAGGTTGG+TGG | 0.658505 | 1_4:+41340696 | None:intergenic |
| TTCTAATTCTCACCCTCACG+TGG | 0.665652 | 1_4:-41337886 | Msa0163320:CDS |
| GTTGGTGACGTACCACGTGA+GGG | 0.676010 | 1_4:+41337874 | None:intergenic |
| GTTGGTTCGACTAATAACAT+CGG | 0.683554 | 1_4:+41340737 | None:intergenic |
| AATAATATGCCATTAACACA+AGG | 0.689101 | 1_4:-41337945 | Msa0163320:CDS |
| ATTTGAGAATTGAACCATGG+AGG | 0.715955 | 1_4:+41340689 | None:intergenic |
| AGGTTGTTAATGGTGTAGGG+TGG | 0.756848 | 1_4:-41340172 | Msa0163320:CDS |
| GTCGGCGTATGTTAGCAGAG+GGG | 0.766314 | 1_4:-41340237 | Msa0163320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATTATATATTTATA+TGG | + | chr1_4:41338588-41338607 | None:intergenic | 0.0% |
| !! | AAGAAAAAAAGAAAAAAAAA+AGG | + | chr1_4:41339053-41339072 | None:intergenic | 10.0% |
| !! | TTATTTCAATAATAAAAGTT+TGG | - | chr1_4:41339474-41339493 | Msa0163320:intron | 10.0% |
| !! | TATTTCAATAATAAAAGTTT+GGG | - | chr1_4:41339475-41339494 | Msa0163320:intron | 10.0% |
| !! | AAAAATCGTAAAAAAAAATT+CGG | + | chr1_4:41339720-41339739 | None:intergenic | 10.0% |
| !!! | AAATTAAAACTGAAATTTTT+CGG | + | chr1_4:41339746-41339765 | None:intergenic | 10.0% |
| !! | AAAAATCGTAAAAAAAAATT+CGG | + | chr1_4:41339720-41339739 | None:intergenic | 10.0% |
| !! | AATATGATTATTATTATCAT+AGG | - | chr1_4:41340370-41340389 | Msa0163320:CDS | 10.0% |
| !!! | TGTCTTTTTTTAATTATATT+AGG | - | chr1_4:41340737-41340756 | Msa0163320:CDS | 10.0% |
| !!! | TTAGTACTTAGATTTTTTTA+GGG | + | chr1_4:41338561-41338580 | None:intergenic | 15.0% |
| !! | TCTATGAAAAAATTATAACA+AGG | - | chr1_4:41339145-41339164 | Msa0163320:intron | 15.0% |
| !!! | CTTCTTTGTTTTTTTTTTTT+TGG | + | chr1_4:41339234-41339253 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAATAAGCCA+GGG | + | chr1_4:41339677-41339696 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAAATAAGCC+AGG | + | chr1_4:41339678-41339697 | None:intergenic | 15.0% |
| !! | AAAATCGTAAAAAAAAATTC+GGG | + | chr1_4:41339719-41339738 | None:intergenic | 15.0% |
| !! | AAAATCGTAAAAAAAAATTC+GGG | + | chr1_4:41339719-41339738 | None:intergenic | 15.0% |
| !!! | GTTAGTACTTAGATTTTTTT+AGG | + | chr1_4:41338562-41338581 | None:intergenic | 20.0% |
| !!! | TTGATTGATAGTACTTAAAT+GGG | - | chr1_4:41338631-41338650 | Msa0163320:intron | 20.0% |
| !!! | ATTATAATAGCATGGTTTTT+CGG | + | chr1_4:41338853-41338872 | None:intergenic | 20.0% |
| !! | GTAAAGATTAATTGTCAAAT+TGG | + | chr1_4:41338880-41338899 | None:intergenic | 20.0% |
| !!! | AAAGGAAAAATATGGTTTTA+GGG | + | chr1_4:41338979-41338998 | None:intergenic | 20.0% |
| !!! | AAAAGGAAAAATATGGTTTT+AGG | + | chr1_4:41338980-41338999 | None:intergenic | 20.0% |
| !! | GAAAGAAAAAAGGAAAAATA+TGG | + | chr1_4:41338987-41339006 | None:intergenic | 20.0% |
| !! | CTCATAAAATGAAAGAAAAA+AGG | + | chr1_4:41338997-41339016 | None:intergenic | 20.0% |
| !!! | TTTTTCATAGAAAAAAGAAC+AGG | + | chr1_4:41339136-41339155 | None:intergenic | 20.0% |
| !! | ATGAAACAATTATATTCTCA+TGG | - | chr1_4:41339254-41339273 | Msa0163320:intron | 20.0% |
| !! | AAAAAAAAAAAATAAGCCAG+GGG | + | chr1_4:41339676-41339695 | None:intergenic | 20.0% |
| !!! | CTGAAAAAACTGAAATTTTT+CGG | + | chr1_4:41339896-41339915 | None:intergenic | 20.0% |
| !! | TAAGGAAAAAAAAATAAGTC+AGG | - | chr1_4:41340020-41340039 | Msa0163320:intron | 20.0% |
| !! | AAGGAAAAAAAAATAAGTCA+GGG | - | chr1_4:41340021-41340040 | Msa0163320:intron | 20.0% |
| !!! | ATTTTACCCTAAAAGTTTAT+AGG | - | chr1_4:41340214-41340233 | Msa0163320:CDS | 20.0% |
| !!! | GTCACATTTTTCTTATTTTA+CGG | - | chr1_4:41340308-41340327 | Msa0163320:CDS | 20.0% |
| !! | TTTGCATACAAACAAAATAA+GGG | + | chr1_4:41340335-41340354 | None:intergenic | 20.0% |
| !! | ATTTGCATACAAACAAAATA+AGG | + | chr1_4:41340336-41340355 | None:intergenic | 20.0% |
| !! | ACATATATCTAGTAGTAATA+TGG | + | chr1_4:41340685-41340704 | None:intergenic | 20.0% |
| !!! | ATTTTTCAGCGTATTGTTTT+GGG | + | chr1_4:41338024-41338043 | None:intergenic | 25.0% |
| !!! | TATTTTTCAGCGTATTGTTT+TGG | + | chr1_4:41338025-41338044 | None:intergenic | 25.0% |
| !!! | TACTTAGATTTTTTTAGGGA+TGG | + | chr1_4:41338557-41338576 | None:intergenic | 25.0% |
| ! | TCAATCAAGTAGTTGAATTA+GGG | + | chr1_4:41338619-41338638 | None:intergenic | 25.0% |
| ! | ATCAATCAAGTAGTTGAATT+AGG | + | chr1_4:41338620-41338639 | None:intergenic | 25.0% |
| !! | CTTGATTGATAGTACTTAAA+TGG | - | chr1_4:41338630-41338649 | Msa0163320:intron | 25.0% |
| !! | TTCTTGAACAAGAATTTTGT+CGG | - | chr1_4:41338716-41338735 | Msa0163320:intron | 25.0% |
| !!! | AACTCGATAATTAGTCTTTA+CGG | - | chr1_4:41338755-41338774 | Msa0163320:intron | 25.0% |
| ! | AGATTAATTGTCAAATTGGA+TGG | + | chr1_4:41338876-41338895 | None:intergenic | 25.0% |
| !! | TTTCTTTCATTTTATGAGTG+TGG | - | chr1_4:41338999-41339018 | Msa0163320:intron | 25.0% |
| ! | AAGTAAACAGATGAAAACAA+AGG | + | chr1_4:41339353-41339372 | None:intergenic | 25.0% |
| !! | TCAAGTGATTAACTTTTACA+GGG | + | chr1_4:41340120-41340139 | None:intergenic | 25.0% |
| !! | TTCAAGTGATTAACTTTTAC+AGG | + | chr1_4:41340119-41340138 | None:intergenic | 25.0% |
| !! | ATTCGGGAAAAAAATTTTGA+AGG | + | chr1_4:41339703-41339722 | None:intergenic | 25.0% |
| ! | AAAAAATTCGGGAAAAAACT+GGG | + | chr1_4:41339858-41339877 | None:intergenic | 25.0% |
| ! | AAAAAAATTCGGGAAAAAAC+TGG | + | chr1_4:41339859-41339878 | None:intergenic | 25.0% |
| ! | AGGAAAAAAAAATAAGTCAG+GGG | - | chr1_4:41340022-41340041 | Msa0163320:intron | 25.0% |
| !! | TTCAAGTGATTAACTTTTAC+AGG | - | chr1_4:41340119-41340138 | Msa0163320:CDS | 25.0% |
| !! | TCAAGTGATTAACTTTTACA+GGG | - | chr1_4:41340120-41340139 | Msa0163320:CDS | 25.0% |
| !! | TCTGAACCTATAAACTTTTA+GGG | + | chr1_4:41340223-41340242 | None:intergenic | 25.0% |
| !! | TTCTGAACCTATAAACTTTT+AGG | + | chr1_4:41340224-41340243 | None:intergenic | 25.0% |
| ! | TTCAAAATTCGTTTCTGATT+AGG | + | chr1_4:41340286-41340305 | None:intergenic | 25.0% |
| ! | TTGCATACAAACAAAATAAG+GGG | + | chr1_4:41340334-41340353 | None:intergenic | 25.0% |
| ! | TTACTATCATAAGAACATTG+AGG | + | chr1_4:41340565-41340584 | None:intergenic | 25.0% |
| ! | AATAATATGCCATTAACACA+AGG | - | chr1_4:41340589-41340608 | Msa0163320:CDS | 25.0% |
| ! | ATATCTAGTAGTAATATGGT+TGG | + | chr1_4:41340681-41340700 | None:intergenic | 25.0% |
| !!! | ATGTTTTTGAGGTTGTAATG+AGG | + | chr1_4:41337884-41337903 | None:intergenic | 30.0% |
| !!! | ATTGTTTTGGGATAACAAGA+CGG | + | chr1_4:41338012-41338031 | None:intergenic | 30.0% |
| !!! | TAAGTTTTGAAGATGAGTCA+GGG | - | chr1_4:41338092-41338111 | Msa0163320:CDS | 30.0% |
| TACTGTTCCAATATGAGTAA+CGG | + | chr1_4:41338132-41338151 | None:intergenic | 30.0% | |
| CAAAGCTATGTTCTAACAAA+AGG | - | chr1_4:41338154-41338173 | Msa0163320:intron | 30.0% | |
| CTTTAATCTTCATCTTGACT+TGG | - | chr1_4:41338657-41338676 | Msa0163320:intron | 30.0% | |
| GTAAAGACTAATTATCGAGT+TGG | + | chr1_4:41338756-41338775 | None:intergenic | 30.0% | |
| !!! | ACCTAGTTTTTAGTGTAAAG+CGG | + | chr1_4:41338798-41338817 | None:intergenic | 30.0% |
| !! | TTGGATGGATTATAATAGCA+TGG | + | chr1_4:41338861-41338880 | None:intergenic | 30.0% |
| TAATCTTTACAGTAGCATCT+CGG | - | chr1_4:41338890-41338909 | Msa0163320:intron | 30.0% | |
| TTCGCTTTACACTAAAAACT+AGG | - | chr1_4:41338918-41338937 | Msa0163320:intron | 30.0% | |
| AAGTCTACCTTCCAATTAAT+TGG | - | chr1_4:41339286-41339305 | Msa0163320:intron | 30.0% | |
| AGTCTACCTTCCAATTAATT+GGG | - | chr1_4:41339287-41339306 | Msa0163320:intron | 30.0% | |
| ATTTCTCCCAATTAATTGGA+AGG | + | chr1_4:41339296-41339315 | None:intergenic | 30.0% | |
| !!! | GAGAAATGTGGTTTTATGTT+GGG | - | chr1_4:41339309-41339328 | Msa0163320:intron | 30.0% |
| ACAGATGAAAACAAAGGATT+TGG | + | chr1_4:41339347-41339366 | None:intergenic | 30.0% | |
| TCAAATGGCCTATAATTACA+GGG | + | chr1_4:41340180-41340199 | None:intergenic | 30.0% | |
| TTCAAATGGCCTATAATTAC+AGG | + | chr1_4:41340179-41340198 | None:intergenic | 30.0% | |
| TTCAAATGGCCTATAATTAC+AGG | - | chr1_4:41340179-41340198 | Msa0163320:CDS | 30.0% | |
| TCAAATGGCCTATAATTACA+GGG | - | chr1_4:41340180-41340199 | Msa0163320:CDS | 30.0% | |
| GTTTATAGGTTCAGAAAACT+AGG | - | chr1_4:41340228-41340247 | Msa0163320:CDS | 30.0% | |
| TGTTATAATGTTACAGGTAG+AGG | - | chr1_4:41340415-41340434 | Msa0163320:CDS | 30.0% | |
| GTTATAATGTTACAGGTAGA+GGG | - | chr1_4:41340416-41340435 | Msa0163320:CDS | 30.0% | |
| !! | AAGTTCAACTTCTAGTTCAA+GGG | - | chr1_4:41340483-41340502 | Msa0163320:CDS | 30.0% |
| !! | AGAAGGTTGATGATATTGAT+AGG | + | chr1_4:41340626-41340645 | None:intergenic | 30.0% |
| ATCTTTCAGAAACATCACTC+TGG | - | chr1_4:41337735-41337754 | Msa0163320:three_prime_UTR | 35.0% | |
| !! | GTTGGTTCGACTAATAACAT+CGG | + | chr1_4:41337800-41337819 | None:intergenic | 35.0% |
| TATTAGTCGAACCAACTTCT+TGG | - | chr1_4:41337804-41337823 | Msa0163320:three_prime_UTR | 35.0% | |
| ATTTGAGAATTGAACCATGG+AGG | + | chr1_4:41337848-41337867 | None:intergenic | 35.0% | |
| TGGATTTGAGAATTGAACCA+TGG | + | chr1_4:41337851-41337870 | None:intergenic | 35.0% | |
| ! | TGTAATGAGGTGAGTTTTCA+TGG | + | chr1_4:41337871-41337890 | None:intergenic | 35.0% |
| !! | CTTCATCTTCGATGTTTTTG+AGG | + | chr1_4:41337895-41337914 | None:intergenic | 35.0% |
| !!! | TTCGTCTTCGGGTTTTATTA+CGG | + | chr1_4:41337936-41337955 | None:intergenic | 35.0% |
| AATAAAACCCGAAGACGAAA+AGG | - | chr1_4:41337937-41337956 | Msa0163320:CDS | 35.0% | |
| !! | ATTGATTCCTTTTCGTCTTC+GGG | + | chr1_4:41337947-41337966 | None:intergenic | 35.0% |
| !!! | CATTGATTCCTTTTCGTCTT+CGG | + | chr1_4:41337948-41337967 | None:intergenic | 35.0% |
| GCTGAAAAATACTTTCCACT+CGG | - | chr1_4:41338034-41338053 | Msa0163320:CDS | 35.0% | |
| TAGTAAAAGTCCTTTGCACT+CGG | + | chr1_4:41338074-41338093 | None:intergenic | 35.0% | |
| !!! | CTAAGTTTTGAAGATGAGTC+AGG | - | chr1_4:41338091-41338110 | Msa0163320:CDS | 35.0% |
| GCTATGTTCTAACAAAAGGT+TGG | - | chr1_4:41338158-41338177 | Msa0163320:intron | 35.0% | |
| ! | GTCAGAGACTTTTTATCAAC+TGG | - | chr1_4:41338251-41338270 | Msa0163320:intron | 35.0% |
| ! | AGAGACTTTTTATCAACTGG+AGG | - | chr1_4:41338254-41338273 | Msa0163320:intron | 35.0% |
| ATCATGGTAAAGGTAGTGAT+GGG | - | chr1_4:41338326-41338345 | Msa0163320:intron | 35.0% | |
| GGTAAGAATGAGGTTGTTAA+TGG | - | chr1_4:41338352-41338371 | Msa0163320:intron | 35.0% | |
| AATGAGGTTGTTAATGGTGT+AGG | - | chr1_4:41338358-41338377 | Msa0163320:intron | 35.0% | |
| ATGAGGTTGTTAATGGTGTA+GGG | - | chr1_4:41338359-41338378 | Msa0163320:intron | 35.0% | |
| AGACATTGATCATGTTGGTA+TGG | + | chr1_4:41338445-41338464 | None:intergenic | 35.0% | |
| CATGAAGACATTGATCATGT+TGG | + | chr1_4:41338450-41338469 | None:intergenic | 35.0% | |
| !! | AGACTAATTATCGAGTTGGA+CGG | + | chr1_4:41338752-41338771 | None:intergenic | 35.0% |
| TCCGCTTTACACTAAAAACT+AGG | - | chr1_4:41338794-41338813 | Msa0163320:intron | 35.0% | |
| CCACATTTCTCCCAATTAAT+TGG | + | chr1_4:41339300-41339319 | None:intergenic | 35.0% | |
| CCAATTAATTGGGAGAAATG+TGG | - | chr1_4:41339297-41339316 | Msa0163320:intron | 35.0% | |
| !!! | GGAGAAATGTGGTTTTATGT+TGG | - | chr1_4:41339308-41339327 | Msa0163320:intron | 35.0% |
| ! | CTTTTCGTCCCTGTAATTAT+AGG | - | chr1_4:41339507-41339526 | Msa0163320:intron | 35.0% |
| ! | AACTTTTACAGGGACGAAAT+GGG | + | chr1_4:41340130-41340149 | None:intergenic | 35.0% |
| ! | TAACTTTTACAGGGACGAAA+TGG | + | chr1_4:41340129-41340148 | None:intergenic | 35.0% |
| !!! | ATTTTGGTAATTTGCTGACG+TGG | + | chr1_4:41340067-41340086 | None:intergenic | 35.0% |
| ACGTCAGCAAATTACCAAAA+TGG | - | chr1_4:41339630-41339649 | Msa0163320:intron | 35.0% | |
| AGCAAATTACCAAAATGGCA+TGG | - | chr1_4:41339635-41339654 | Msa0163320:intron | 35.0% | |
| GCAAATTACCAAAATGGCAT+GGG | - | chr1_4:41339636-41339655 | Msa0163320:intron | 35.0% | |
| GCAAATTACCAAAATGGCAT+GGG | + | chr1_4:41339636-41339655 | None:intergenic | 35.0% | |
| AGCAAATTACCAAAATGGCA+TGG | + | chr1_4:41339635-41339654 | None:intergenic | 35.0% | |
| ACGTCAGCAAATTACCAAAA+TGG | + | chr1_4:41339630-41339649 | None:intergenic | 35.0% | |
| !!! | ATTTTGGTAATTTGCTGACG+TGG | - | chr1_4:41340067-41340086 | Msa0163320:intron | 35.0% |
| ! | TAACTTTTACAGGGACGAAA+TGG | - | chr1_4:41340129-41340148 | Msa0163320:CDS | 35.0% |
| ! | AACTTTTACAGGGACGAAAT+GGG | - | chr1_4:41340130-41340149 | Msa0163320:CDS | 35.0% |
| ! | CTTTTCGTCCCTGTAATTAT+AGG | + | chr1_4:41339507-41339526 | None:intergenic | 35.0% |
| TATAGGTTCAGAAAACTAGG+CGG | - | chr1_4:41340231-41340250 | Msa0163320:CDS | 35.0% | |
| TTCTGATTAGGATGATGTGA+AGG | + | chr1_4:41340274-41340293 | None:intergenic | 35.0% | |
| GTAACATTATAACACGTGCA+TGG | + | chr1_4:41340409-41340428 | None:intergenic | 35.0% | |
| TGCACGTGTTATAATGTTAC+AGG | - | chr1_4:41340409-41340428 | Msa0163320:CDS | 35.0% | |
| !! | CAAGTTCAACTTCTAGTTCA+AGG | - | chr1_4:41340482-41340501 | Msa0163320:CDS | 35.0% |
| TTGAAGAATCATGTTCAGGT+TGG | + | chr1_4:41340540-41340559 | None:intergenic | 35.0% | |
| ! | TCTAGAGTACCTTGTGTTAA+TGG | + | chr1_4:41340601-41340620 | None:intergenic | 35.0% |
| GGGTGAGAATTAGAATTAGA+AGG | + | chr1_4:41340643-41340662 | None:intergenic | 35.0% | |
| AGATATATGTACCATCCTTG+AGG | - | chr1_4:41340695-41340714 | Msa0163320:CDS | 35.0% | |
| TTTCAGAAACATCACTCTGG+TGG | - | chr1_4:41337738-41337757 | Msa0163320:three_prime_UTR | 40.0% | |
| ! | TTGAGTTTTCCTACGTCAGA+AGG | + | chr1_4:41337989-41338008 | None:intergenic | 40.0% |
| GAAAAATACTTTCCACTCGG+CGG | - | chr1_4:41338037-41338056 | Msa0163320:CDS | 40.0% | |
| ! | GACTTTTTATCAACTGGAGG+AGG | - | chr1_4:41338257-41338276 | Msa0163320:intron | 40.0% |
| ! | TTTTTATCAACTGGAGGAGG+AGG | - | chr1_4:41338260-41338279 | Msa0163320:intron | 40.0% |
| CATCATGGTAAAGGTAGTGA+TGG | - | chr1_4:41338325-41338344 | Msa0163320:intron | 40.0% | |
| TGATGGGAATGGTAAGAATG+AGG | - | chr1_4:41338342-41338361 | Msa0163320:intron | 40.0% | |
| CATGATCAATGTCTTCATGC+AGG | - | chr1_4:41338451-41338470 | Msa0163320:intron | 40.0% | |
| CTCAGGGACGAAAATTCAAA+TGG | + | chr1_4:41340165-41340184 | None:intergenic | 40.0% | |
| TGACGTGGCAGTGATTAAAA+GGG | + | chr1_4:41340082-41340101 | None:intergenic | 40.0% | |
| TGACGTGGCAGTGATTAAAA+GGG | - | chr1_4:41340082-41340101 | Msa0163320:intron | 40.0% | |
| CTCAGGGACGAAAATTCAAA+TGG | - | chr1_4:41340165-41340184 | Msa0163320:CDS | 40.0% | |
| !! | CTTCTAGTTCAAGGGTACTT+AGG | - | chr1_4:41340491-41340510 | Msa0163320:CDS | 40.0% |
| !! | TCAAGGGTACTTAGGTTGTT+TGG | - | chr1_4:41340499-41340518 | Msa0163320:CDS | 40.0% |
| !! | CAAGGGTACTTAGGTTGTTT+GGG | - | chr1_4:41340500-41340519 | Msa0163320:CDS | 40.0% |
| !! | AAGGGTACTTAGGTTGTTTG+GGG | - | chr1_4:41340501-41340520 | Msa0163320:CDS | 40.0% |
| ! | GGTGTTGAAGAATCATGTTC+AGG | + | chr1_4:41340544-41340563 | None:intergenic | 40.0% |
| ATATGTACCATCCTTGAGGT+TGG | - | chr1_4:41340699-41340718 | Msa0163320:CDS | 40.0% | |
| TATGTACCATCCTTGAGGTT+GGG | - | chr1_4:41340700-41340719 | Msa0163320:CDS | 40.0% | |
| TAACTTAGAACCCAACCTCA+AGG | + | chr1_4:41340713-41340732 | None:intergenic | 40.0% | |
| TGATGGAGAGACCAAGAAGT+TGG | + | chr1_4:41337818-41337837 | None:intergenic | 45.0% | |
| AATTGAACCATGGAGGTTGG+TGG | + | chr1_4:41337841-41337860 | None:intergenic | 45.0% | |
| GAGAATTGAACCATGGAGGT+TGG | + | chr1_4:41337844-41337863 | None:intergenic | 45.0% | |
| !!! | TTCGGGTTTTATTACGGTGG+TGG | + | chr1_4:41337930-41337949 | None:intergenic | 45.0% |
| !!! | GTCTTCGGGTTTTATTACGG+TGG | + | chr1_4:41337933-41337952 | None:intergenic | 45.0% |
| !! | CCTACGTCAGAAGGTGTTAA+GGG | + | chr1_4:41337980-41337999 | None:intergenic | 45.0% |
| !! | TCCTACGTCAGAAGGTGTTA+AGG | + | chr1_4:41337981-41338000 | None:intergenic | 45.0% |
| TAAAAGTCCTTTGCACTCGG+CGG | + | chr1_4:41338071-41338090 | None:intergenic | 45.0% | |
| ! | AAGATGAGTCAGGGAAGTGT+TGG | - | chr1_4:41338101-41338120 | Msa0163320:CDS | 45.0% |
| GGCGTTTCCGTTACTCATAT+TGG | - | chr1_4:41338122-41338141 | Msa0163320:intron | 45.0% | |
| AAAGACAAACGACTCGATGC+TGG | - | chr1_4:41338193-41338212 | Msa0163320:intron | 45.0% | |
| ! | GGTAAAGGTAGTGATGGGAA+TGG | - | chr1_4:41338331-41338350 | Msa0163320:intron | 45.0% |
| AGGTTGTTAATGGTGTAGGG+TGG | - | chr1_4:41338362-41338381 | Msa0163320:intron | 45.0% | |
| ! | TGATGATGATGCGCAGGATA+AGG | + | chr1_4:41338415-41338434 | None:intergenic | 45.0% |
| !! | AAGACTTGATGATGATGCGC+AGG | + | chr1_4:41338421-41338440 | None:intergenic | 45.0% |
| ! | TGGGAGGATTAGTAAGCTCA+GGG | + | chr1_4:41340149-41340168 | None:intergenic | 45.0% |
| ! | ATGGGAGGATTAGTAAGCTC+AGG | + | chr1_4:41340148-41340167 | None:intergenic | 45.0% |
| ! | TTTTACAGGGACGAAATGGG+AGG | + | chr1_4:41340133-41340152 | None:intergenic | 45.0% |
| GACGTGGCAGTGATTAAAAG+GGG | + | chr1_4:41340083-41340102 | None:intergenic | 45.0% | |
| CTGACGTGGCAGTGATTAAA+AGG | + | chr1_4:41340081-41340100 | None:intergenic | 45.0% | |
| !! | CGTCATTTCCCATGCCATTT+TGG | + | chr1_4:41340051-41340070 | None:intergenic | 45.0% |
| GGAAATGACGAAAATACCCC+TGG | - | chr1_4:41339657-41339676 | Msa0163320:intron | 45.0% | |
| !! | CGTCATTTCCCATGCCATTT+TGG | - | chr1_4:41340051-41340070 | Msa0163320:intron | 45.0% |
| CTGACGTGGCAGTGATTAAA+AGG | - | chr1_4:41340081-41340100 | Msa0163320:intron | 45.0% | |
| GACGTGGCAGTGATTAAAAG+GGG | - | chr1_4:41340083-41340102 | Msa0163320:intron | 45.0% | |
| ! | TTTTACAGGGACGAAATGGG+AGG | - | chr1_4:41340133-41340152 | Msa0163320:CDS | 45.0% |
| ! | ATGGGAGGATTAGTAAGCTC+AGG | - | chr1_4:41340148-41340167 | Msa0163320:CDS | 45.0% |
| ! | TGGGAGGATTAGTAAGCTCA+GGG | - | chr1_4:41340149-41340168 | Msa0163320:CDS | 45.0% |
| !! | CGTCCTTTGGTTCTGACTTT+GGG | + | chr1_4:41340443-41340462 | None:intergenic | 45.0% |
| !! | TCGTCCTTTGGTTCTGACTT+TGG | + | chr1_4:41340444-41340463 | None:intergenic | 45.0% |
| TCAGAACCAAAGGACGAAAC+CGG | - | chr1_4:41340447-41340466 | Msa0163320:CDS | 45.0% | |
| GAACTTGAACTCTTTCCCAC+CGG | + | chr1_4:41340469-41340488 | None:intergenic | 45.0% | |
| ! | TAGGTTGTTTGGGGTCAACA+TGG | - | chr1_4:41340510-41340529 | Msa0163320:CDS | 45.0% |
| TTCTAATTCTCACCCTCACG+TGG | - | chr1_4:41340648-41340667 | Msa0163320:CDS | 45.0% | |
| TTAGAACCCAACCTCAAGGA+TGG | + | chr1_4:41340709-41340728 | None:intergenic | 45.0% | |
| !! | TTAAAAAACATAAAAAATTT+CGG | + | chr1_4:41339782-41339801 | None:intergenic | 5.0% |
| !! | TTAAAAATCATAAAAAATTT+CGG | + | chr1_4:41339941-41339960 | None:intergenic | 5.0% |
| !!! | AAATTTTGAAATTTTTTTTA+AGG | - | chr1_4:41340002-41340021 | Msa0163320:intron | 5.0% |
| CCCTTAACACCTTCTGACGT+AGG | - | chr1_4:41337977-41337996 | Msa0163320:CDS | 50.0% | |
| AGTCGGCGTATGTTAGCAGA+GGG | - | chr1_4:41338296-41338315 | Msa0163320:intron | 50.0% | |
| ATGCGCAGAATAGAACCCTC+TGG | + | chr1_4:41338389-41338408 | None:intergenic | 50.0% | |
| GCAGTGATTAAAAGGGGCGA+GGG | + | chr1_4:41340089-41340108 | None:intergenic | 50.0% | |
| GCAGTGATTAAAAGGGGCGA+GGG | - | chr1_4:41340089-41340108 | Msa0163320:CDS | 50.0% | |
| AGGTTCAGAAAACTAGGCGG+TGG | - | chr1_4:41340234-41340253 | Msa0163320:CDS | 50.0% | |
| GGTCCCAAAGTCAGAACCAA+AGG | - | chr1_4:41340437-41340456 | Msa0163320:CDS | 50.0% | |
| AACCAAAGGACGAAACCGGT+GGG | - | chr1_4:41340451-41340470 | Msa0163320:CDS | 50.0% | |
| TCCATCACCACCAACCTCCA+TGG | - | chr1_4:41337831-41337850 | Msa0163320:three_prime_UTR | 55.0% | |
| !! | ACCATGGAGGTTGGTGGTGA+TGG | + | chr1_4:41337835-41337854 | None:intergenic | 55.0% |
| ATCAACTGGAGGAGGAGGAG+TGG | - | chr1_4:41338265-41338284 | Msa0163320:intron | 55.0% | |
| TCAACTGGAGGAGGAGGAGT+GGG | - | chr1_4:41338266-41338285 | Msa0163320:intron | 55.0% | |
| GAGGAGTGGGGATGATCAGT+CGG | - | chr1_4:41338279-41338298 | Msa0163320:intron | 55.0% | |
| CAGTCGGCGTATGTTAGCAG+AGG | - | chr1_4:41338295-41338314 | Msa0163320:intron | 55.0% | |
| GTCGGCGTATGTTAGCAGAG+GGG | - | chr1_4:41338297-41338316 | Msa0163320:intron | 55.0% | |
| GCGTATGTTAGCAGAGGGGT+GGG | - | chr1_4:41338301-41338320 | Msa0163320:intron | 55.0% | |
| GGGGTGGGACATCATGGTAA+AGG | - | chr1_4:41338316-41338335 | Msa0163320:intron | 55.0% | |
| AATGGTGTAGGGTGGTCCAG+AGG | - | chr1_4:41338370-41338389 | Msa0163320:intron | 55.0% | |
| ATGGTGTAGGGTGGTCCAGA+GGG | - | chr1_4:41338371-41338390 | Msa0163320:intron | 55.0% | |
| GGCAGTGATTAAAAGGGGCG+AGG | + | chr1_4:41340088-41340107 | None:intergenic | 55.0% | |
| GGCAGTGATTAAAAGGGGCG+AGG | - | chr1_4:41340088-41340107 | Msa0163320:CDS | 55.0% | |
| GAACCAAAGGACGAAACCGG+TGG | - | chr1_4:41340450-41340469 | Msa0163320:CDS | 55.0% | |
| !! | TTCCCACCGGTTTCGTCCTT+TGG | + | chr1_4:41340456-41340475 | None:intergenic | 55.0% |
| !! | GTTGGTGACGTACCACGTGA+GGG | + | chr1_4:41340663-41340682 | None:intergenic | 55.0% |
| CAACTGGAGGAGGAGGAGTG+GGG | - | chr1_4:41338267-41338286 | Msa0163320:intron | 60.0% | |
| GGCGTATGTTAGCAGAGGGG+TGG | - | chr1_4:41338300-41338319 | Msa0163320:intron | 60.0% | |
| AGCAGAGGGGTGGGACATCA+TGG | - | chr1_4:41338310-41338329 | Msa0163320:intron | 60.0% | |
| !! | GGTTGGTGACGTACCACGTG+AGG | + | chr1_4:41340664-41340683 | None:intergenic | 60.0% |
| GCAGACTCCGCCGAGTGCAA+AGG | - | chr1_4:41338061-41338080 | Msa0163320:CDS | 65.0% | |
| GCGGAGTCTGCTCCGCCGAG+TGG | + | chr1_4:41338052-41338071 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 41337731 | 41340825 | 41337731 | ID=Msa0163320;Name=Msa0163320 |
| chr1_4 | mRNA | 41337731 | 41340825 | 41337731 | ID=Msa0163320-mRNA-1;Parent=Msa0163320;Name=Msa0163320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|129|335 |
| chr1_4 | exon | 41337731 | 41338125 | 41337731 | ID=Msa0163320-mRNA-1:exon:11909;Parent=Msa0163320-mRNA-1 |
| chr1_4 | exon | 41340084 | 41340825 | 41340084 | ID=Msa0163320-mRNA-1:exon:11908;Parent=Msa0163320-mRNA-1 |
| chr1_4 | CDS | 41340084 | 41340825 | 41340084 | ID=Msa0163320-mRNA-1:cds;Parent=Msa0163320-mRNA-1 |
| chr1_4 | CDS | 41337860 | 41338125 | 41337860 | ID=Msa0163320-mRNA-1:cds;Parent=Msa0163320-mRNA-1 |
| chr1_4 | three_prime_UTR | 41337731 | 41337859 | 41337731 | ID=Msa0163320-mRNA-1:three_prime_utr;Parent=Msa0163320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
