AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0164380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0164380 MtrunA17_Chr2g0285931 94.350 354 2 1 1 354 1 336 0.0 680
Msa0164380 MtrunA17_Chr4g0052251 66.761 352 95 4 1 350 1 332 2.57e-172 482
Msa0164380 MtrunA17_Chr2g0313111 59.143 350 117 4 1 350 1 324 3.23e-152 431
Msa0164380 MtrunA17_Chr8g0358941 54.701 351 139 3 1 350 1 332 6.57e-133 382
Msa0164380 MtrunA17_Chr1g0194321 48.036 331 146 3 27 349 19 331 7.08e-106 314
Msa0164380 MtrunA17_Chr4g0068891 44.136 324 153 5 28 348 20 318 3.25e-91 276
Msa0164380 MtrunA17_Chr2g0293931 43.056 216 101 4 136 349 8 203 1.26e-53 176
Msa0164380 MtrunA17_Chr2g0332191 31.503 346 196 8 9 345 37 350 7.76e-47 163
Msa0164380 MtrunA17_Chr5g0423191 30.395 329 189 9 21 340 40 337 1.71e-44 156
Msa0164380 MtrunA17_Chr5g0423251 30.395 329 189 10 21 340 40 337 5.42e-43 152
Msa0164380 MtrunA17_Chr5g0420941 29.254 335 185 10 21 340 38 335 7.50e-42 149
Msa0164380 MtrunA17_Chr8g0345831 29.909 331 186 8 23 341 37 333 5.31e-41 147
Msa0164380 MtrunA17_Chr5g0421041 31.003 329 185 11 21 340 40 335 7.18e-41 146
Msa0164380 MtrunA17_Chr4g0045411 31.454 337 181 9 19 334 21 328 9.31e-41 146
Msa0164380 MtrunA17_Chr5g0420951 29.091 330 193 10 21 340 46 344 7.31e-40 144
Msa0164380 MtrunA17_Chr8g0365241 29.341 334 195 11 17 340 46 348 4.61e-39 142
Msa0164380 MtrunA17_Chr8g0375601 29.565 345 186 11 15 340 35 341 1.27e-38 141
Msa0164380 MtrunA17_Chr5g0420981 28.182 330 196 10 21 340 46 344 1.37e-38 140
Msa0164380 MtrunA17_Chr7g0242551 30.189 318 181 10 28 332 54 343 1.65e-38 140
Msa0164380 MtrunA17_Chr2g0296371 31.629 313 174 10 45 350 76 355 4.82e-38 139
Msa0164380 MtrunA17_Chr1g0162351 29.885 348 187 11 10 328 49 368 1.78e-36 136
Msa0164380 MtrunA17_Chr4g0045431 30.145 345 184 12 12 328 8 323 3.10e-36 134
Msa0164380 MtrunA17_Chr5g0437181 28.529 340 192 12 6 332 36 337 4.07e-36 134
Msa0164380 MtrunA17_Chr3g0113641 29.245 318 183 11 28 332 50 338 4.65e-36 134
Msa0164380 MtrunA17_Chr8g0375571 26.347 334 200 10 21 340 38 339 1.20e-35 132
Msa0164380 MtrunA17_Chr3g0128001 28.274 336 195 11 16 340 26 326 1.33e-35 132
Msa0164380 MtrunA17_Chr5g0412671 29.261 352 192 10 10 339 17 333 1.96e-35 132
Msa0164380 MtrunA17_Chr4g0045471 28.657 335 187 10 19 328 17 324 1.97e-35 132
Msa0164380 MtrunA17_Chr4g0045451 29.855 345 185 12 12 328 8 323 2.08e-35 132
Msa0164380 MtrunA17_Chr5g0421011 28.571 329 195 11 21 340 40 337 2.52e-35 132
Msa0164380 MtrunA17_Chr1g0162321 29.023 348 190 11 10 328 49 368 8.41e-35 131
Msa0164380 MtrunA17_Chr5g0420901 27.356 329 199 9 21 340 39 336 9.25e-35 130
Msa0164380 MtrunA17_Chr5g0412681 28.571 322 192 7 22 336 27 317 1.48e-34 129
Msa0164380 MtrunA17_Chr4g0045441 27.614 373 203 14 12 346 8 351 2.23e-34 129
Msa0164380 MtrunA17_Chr5g0423211 26.970 330 201 10 21 340 40 339 3.46e-34 129
Msa0164380 MtrunA17_Chr4g0006371 28.931 318 185 9 28 332 62 351 3.60e-34 129
Msa0164380 MtrunA17_Chr3g0130391 29.915 351 185 13 20 341 52 370 3.62e-34 129
Msa0164380 MtrunA17_Chr6g0474391 27.027 333 194 12 28 340 64 367 4.85e-34 129
Msa0164380 MtrunA17_Chr5g0423201 27.273 330 199 10 21 340 40 338 5.76e-34 128
Msa0164380 MtrunA17_Chr8g0384461 29.003 331 189 12 28 342 47 347 6.94e-34 128
Msa0164380 MtrunA17_Chr8g0375671 28.228 333 195 10 21 340 45 346 7.51e-34 128
Msa0164380 MtrunA17_Chr2g0314381 29.321 324 187 11 28 340 77 369 8.04e-34 128
Msa0164380 MtrunA17_Chr5g0412651 28.490 351 194 11 11 339 18 333 1.09e-33 127
Msa0164380 MtrunA17_Chr3g0125201 29.595 321 174 12 27 331 2 286 1.22e-33 126
Msa0164380 MtrunA17_Chr1g0162191 29.524 315 166 12 28 324 47 323 1.75e-33 127
Msa0164380 MtrunA17_Chr6g0455481 29.338 317 187 9 28 337 42 328 1.91e-33 126
Msa0164380 MtrunA17_Chr8g0351101 29.607 331 183 13 28 338 54 354 2.63e-33 127
Msa0164380 MtrunA17_Chr7g0239821 28.000 300 181 10 45 340 86 354 2.90e-33 127
Msa0164380 MtrunA17_Chr1g0204181 29.179 329 188 12 24 340 67 362 3.55e-33 126
Msa0164380 MtrunA17_Chr5g0423221 28.994 338 198 12 14 342 59 363 3.60e-33 126
Msa0164380 MtrunA17_Chr5g0421091 28.333 300 181 8 45 340 67 336 3.91e-33 126
Msa0164380 MtrunA17_Chr7g0220011 30.351 313 176 12 28 331 39 318 1.30e-32 124
Msa0164380 MtrunA17_Chr5g0424211 27.673 318 187 9 12 315 22 310 1.66e-32 124
Msa0164380 MtrunA17_Chr4g0066121 28.869 336 183 13 28 346 60 356 2.61e-32 124
Msa0164380 MtrunA17_Chr8g0375701 28.182 330 192 10 22 340 49 344 2.78e-32 124
Msa0164380 MtrunA17_Chr7g0239111 27.129 317 191 10 24 331 51 336 3.55e-32 124
Msa0164380 MtrunA17_Chr5g0424201 26.807 332 202 10 12 331 24 326 6.31e-32 122
Msa0164380 MtrunA17_Chr3g0087031 29.275 345 190 13 12 342 48 352 7.02e-32 122
Msa0164380 MtrunA17_Chr1g0148771 28.671 286 171 6 28 310 63 318 7.34e-32 122
Msa0164380 MtrunA17_Chr1g0184161 26.727 333 189 11 26 342 36 329 1.29e-31 122
Msa0164380 MtrunA17_Chr7g0239101 28.076 317 188 10 24 331 51 336 1.73e-31 121
Msa0164380 MtrunA17_Chr1g0162361 29.191 346 175 12 6 327 15 314 2.08e-31 121
Msa0164380 MtrunA17_Chr1g0191201 28.710 310 184 8 41 342 75 355 2.65e-31 121
Msa0164380 MtrunA17_Chr5g0420721 29.104 268 155 9 77 340 3 239 2.88e-31 119
Msa0164380 MtrunA17_Chr3g0126741 27.492 331 191 10 28 344 59 354 2.88e-31 121
Msa0164380 MtrunA17_Chr3g0093751 27.381 336 183 10 15 331 41 334 3.89e-31 120
Msa0164380 MtrunA17_Chr5g0421101 26.269 335 195 11 21 340 40 337 4.09e-31 120
Msa0164380 MtrunA17_Chr3g0114861 29.499 339 194 12 12 337 21 327 4.84e-31 120
Msa0164380 MtrunA17_Chr1g0184121 28.754 313 182 9 28 330 37 318 2.11e-30 118
Msa0164380 MtrunA17_Chr2g0311631 28.296 311 168 9 42 336 75 346 2.57e-30 119
Msa0164380 MtrunA17_Chr7g0220001 28.485 330 182 13 16 330 29 319 3.43e-30 117
Msa0164380 MtrunA17_Chr5g0405411 27.301 326 191 11 26 337 37 330 4.04e-30 118
Msa0164380 MtrunA17_Chr8g0370711 26.623 308 185 9 28 324 52 329 4.80e-30 117
Msa0164380 MtrunA17_Chr3g0093761 26.866 335 185 11 15 331 41 333 6.09e-30 117
Msa0164380 MtrunA17_Chr2g0319491 26.791 321 174 11 28 333 33 307 9.16e-30 116
Msa0164380 MtrunA17_Chr3g0121141 27.160 324 176 12 25 331 1 281 1.31e-29 115
Msa0164380 MtrunA17_Chr8g0371921 28.522 291 174 7 25 311 44 304 1.45e-29 116
Msa0164380 MtrunA17_Chr2g0314401 25.667 300 188 9 45 340 75 343 1.97e-29 116
Msa0164380 MtrunA17_Chr1g0184151 24.855 346 203 10 11 337 18 325 2.09e-29 115
Msa0164380 MtrunA17_Chr3g0125421 28.875 329 187 10 29 338 37 337 2.22e-29 116
Msa0164380 MtrunA17_Chr8g0370721 27.425 299 176 10 28 315 52 320 2.46e-29 115
Msa0164380 MtrunA17_Chr8g0371931 28.866 291 173 8 25 311 44 304 3.02e-29 115
Msa0164380 MtrunA17_Chr2g0311921 28.611 360 199 16 3 342 27 348 3.41e-29 115
Msa0164380 MtrunA17_Chr3g0145181 26.246 301 186 9 29 324 60 329 4.10e-29 115
Msa0164380 MtrunA17_Chr3g0092531 28.660 321 177 11 28 333 6 289 4.65e-29 114
Msa0164380 MtrunA17_Chr1g0187811 27.616 344 185 12 28 345 188 493 1.03e-28 116
Msa0164380 MtrunA17_Chr1g0184111 28.025 314 185 9 28 331 37 319 1.60e-28 113
Msa0164380 MtrunA17_Chr1g0184101 26.786 336 201 8 26 349 36 338 1.85e-28 113
Msa0164380 MtrunA17_Chr3g0093741 26.190 336 187 10 15 331 41 334 1.90e-28 113
Msa0164380 MtrunA17_Chr7g0239121 27.273 319 189 11 24 331 47 333 2.55e-28 113
Msa0164380 MtrunA17_Chr3g0109041 27.052 329 187 13 28 336 42 337 2.59e-28 113
Msa0164380 MtrunA17_Chr1g0187821 27.841 352 174 12 27 345 66 370 3.82e-28 112
Msa0164380 MtrunA17_Chr8g0384481 28.571 329 192 11 28 342 59 358 5.82e-28 112
Msa0164380 MtrunA17_Chr8g0336861 29.464 336 181 14 26 342 58 356 5.83e-28 112
Msa0164380 MtrunA17_Chr5g0426891 25.496 353 204 13 10 341 18 332 6.17e-28 111
Msa0164380 MtrunA17_Chr5g0398291 26.562 320 190 10 28 331 47 337 6.18e-28 112
Msa0164380 MtrunA17_Chr8g0348081 28.615 325 171 13 28 331 60 344 6.25e-28 112
Msa0164380 MtrunA17_Chr5g0439011 27.019 322 176 9 25 333 13 288 6.79e-28 111
Msa0164380 MtrunA17_Chr6g0472861 28.152 341 190 13 17 340 60 362 7.96e-28 112
Msa0164380 MtrunA17_Chr3g0145201 26.045 311 186 10 28 324 684 964 2.44e-27 113
Msa0164380 MtrunA17_Chr2g0289341 26.959 319 189 11 25 333 1 285 2.57e-27 109
Msa0164380 MtrunA17_Chr1g0167951 27.564 312 177 12 28 325 53 329 2.81e-27 110
Msa0164380 MtrunA17_Chr4g0055591 27.778 342 191 13 7 330 37 340 4.07e-27 110
Msa0164380 MtrunA17_Chr2g0314391 26.333 300 186 9 45 340 94 362 4.18e-27 110
Msa0164380 MtrunA17_Chr3g0102041 27.852 298 173 9 26 311 37 304 5.26e-27 109
Msa0164380 MtrunA17_Chr8g0375681 27.946 297 167 9 54 340 15 274 6.73e-27 107
Msa0164380 MtrunA17_Chr4g0045461 29.885 348 190 12 19 340 15 334 1.07e-26 108
Msa0164380 MtrunA17_Chr4g0064781 28.302 318 183 11 18 324 40 323 1.09e-26 108
Msa0164380 MtrunA17_Chr1g0187831 27.100 369 208 14 7 354 50 378 3.45e-26 107
Msa0164380 MtrunA17_Chr8g0336751 27.660 329 168 12 28 331 94 377 4.12e-26 107
Msa0164380 MtrunA17_Chr2g0311831 27.576 330 181 13 21 331 61 351 4.18e-26 107
Msa0164380 MtrunA17_Chr8g0336851 27.812 320 180 11 28 331 60 344 4.41e-26 107
Msa0164380 MtrunA17_Chr8g0336781 27.879 330 182 13 21 331 88 380 4.93e-26 107
Msa0164380 MtrunA17_Chr1g0167911 26.875 320 181 11 28 331 54 336 5.10e-26 106
Msa0164380 MtrunA17_Chr1g0179801 26.250 320 191 10 28 331 66 356 5.34e-26 107
Msa0164380 MtrunA17_Chr2g0293941 48.515 101 50 1 28 126 19 119 1.30e-25 101
Msa0164380 MtrunA17_Chr8g0336761 26.727 333 188 10 28 342 60 354 2.42e-25 105
Msa0164380 MtrunA17_Chr2g0311861 28.144 334 175 14 21 342 57 337 2.93e-25 104
Msa0164380 MtrunA17_Chr7g0232161 29.804 255 138 11 45 293 82 301 3.49e-25 103
Msa0164380 MtrunA17_Chr3g0114871 29.297 256 156 10 12 254 22 265 4.41e-25 102
Msa0164380 MtrunA17_Chr7g0250511 25.672 335 202 10 12 331 29 331 6.74e-25 103
Msa0164380 MtrunA17_Chr4g0050031 25.305 328 196 10 28 340 62 355 6.83e-25 103
Msa0164380 MtrunA17_Chr3g0145171 26.266 316 191 11 20 324 45 329 7.61e-25 103
Msa0164380 MtrunA17_Chr1g0167961 26.837 313 179 11 28 325 69 346 8.39e-25 103
Msa0164380 MtrunA17_Chr2g0311761 27.248 367 170 17 21 345 61 372 3.96e-24 101
Msa0164380 MtrunA17_Chr8g0336631 25.926 324 182 10 28 331 60 345 5.60e-24 101
Msa0164380 MtrunA17_Chr7g0239091 27.243 301 172 11 45 340 182 440 6.35e-24 102
Msa0164380 MtrunA17_Chr7g0225881 26.586 331 190 11 28 342 67 360 1.85e-23 99.8
Msa0164380 MtrunA17_Chr2g0311701 23.967 363 184 11 28 352 69 377 2.55e-23 99.8
Msa0164380 MtrunA17_Chr7g0266651 27.059 340 191 13 15 337 49 348 3.45e-23 99.0
Msa0164380 MtrunA17_Chr4g0011311 28.244 262 152 10 28 273 67 308 5.82e-23 97.4
Msa0164380 MtrunA17_Chr7g0247741 27.463 335 192 13 28 350 11 306 5.98e-23 97.8
Msa0164380 MtrunA17_Chr7g0265221 25.243 309 179 10 28 315 67 344 1.65e-22 97.4
Msa0164380 MtrunA17_Chr1g0184241 26.006 323 190 11 21 331 62 347 2.42e-22 96.7
Msa0164380 MtrunA17_Chr8g0364471 25.982 331 186 13 21 331 62 353 5.31e-22 95.9
Msa0164380 MtrunA17_Chr7g0239071 25.597 293 176 10 46 331 24 281 6.59e-22 94.7
Msa0164380 MtrunA17_Chr3g0105281 26.006 323 173 13 28 335 34 305 6.79e-22 94.7
Msa0164380 MtrunA17_Chr8g0354261 26.791 321 174 12 45 345 95 374 8.03e-22 95.5
Msa0164380 MtrunA17_Chr3g0082731 40.310 129 63 4 28 153 20 137 8.98e-22 90.1
Msa0164380 MtrunA17_Chr7g0235951 23.529 323 192 11 28 331 67 353 1.21e-21 94.7
Msa0164380 MtrunA17_Chr2g0311711 26.154 325 179 13 28 331 67 351 1.30e-21 94.7
Msa0164380 MtrunA17_Chr2g0314371 25.385 260 152 11 28 256 52 300 4.78e-21 92.4
Msa0164380 MtrunA17_Chr8g0348951 24.269 342 195 12 28 350 10 306 5.11e-21 92.4
Msa0164380 MtrunA17_Chr2g0311741 24.927 341 198 9 27 349 26 326 6.73e-21 92.0
Msa0164380 MtrunA17_Chr7g0265351 24.501 351 193 13 10 331 10 317 7.33e-21 92.0
Msa0164380 MtrunA17_Chr7g0247991 25.439 342 199 13 28 349 67 372 4.60e-20 90.1
Msa0164380 MtrunA17_Chr1g0161041 25.779 353 184 12 20 340 78 384 1.79e-19 89.0
Msa0164380 MtrunA17_Chr8g0354241 28.523 298 158 12 42 325 92 348 2.85e-19 88.2
Msa0164380 MtrunA17_Chr1g0161081 25.588 340 191 13 28 348 73 369 1.42e-18 85.9
Msa0164380 MtrunA17_Chr5g0420881 29.560 159 85 4 183 340 1 133 1.61e-18 81.3
Msa0164380 MtrunA17_Chr5g0394071 27.941 204 104 9 136 335 3 167 1.72e-18 82.4
Msa0164380 MtrunA17_Chr6g0486831 27.011 348 197 8 23 345 19 334 2.41e-18 84.7
Msa0164380 MtrunA17_Chr7g0233661 31.447 159 76 5 178 335 15 141 3.32e-18 80.9
Msa0164380 MtrunA17_Chr4g0075471 31.325 166 85 5 171 333 17 156 4.80e-18 80.5
Msa0164380 MtrunA17_Chr4g0053251 23.780 328 167 11 25 311 5 290 4.84e-18 84.0
Msa0164380 MtrunA17_Chr8g0335411 25.364 343 198 14 28 349 67 372 8.54e-18 83.6
Msa0164380 MtrunA17_Chr4g0066991 25.074 339 184 14 28 349 67 352 1.37e-17 82.8
Msa0164380 MtrunA17_Chr8g0362741 25.287 261 129 8 28 265 67 284 1.42e-17 82.0
Msa0164380 MtrunA17_Chr7g0235981 32.934 167 81 5 134 299 133 269 1.96e-17 82.0
Msa0164380 MtrunA17_Chr1g0158011 27.670 206 122 4 130 334 65 244 2.05e-17 80.9
Msa0164380 MtrunA17_Chr6g0488511 23.333 300 185 10 27 315 2 267 2.40e-17 81.6
Msa0164380 MtrunA17_Chr1g0161111 24.847 326 195 13 28 340 132 420 3.46e-17 82.4
Msa0164380 MtrunA17_Chr3g0126761 30.247 162 86 4 183 344 91 225 5.08e-17 79.3
Msa0164380 MtrunA17_Chr7g0236011 25.146 342 200 12 28 349 67 372 1.53e-16 80.1
Msa0164380 MtrunA17_Chr5g0407781 25.526 333 177 12 28 340 5 286 5.47e-15 74.7
Msa0164380 MtrunA17_Chr8g0364171 28.859 149 93 4 118 265 1 137 8.80e-15 70.9
Msa0164380 MtrunA17_Chr4g0055911 26.510 298 164 14 27 303 8 271 1.16e-14 73.9
Msa0164380 MtrunA17_Chr4g0055871 25.503 298 160 14 28 303 9 266 5.59e-14 72.0
Msa0164380 MtrunA17_Chr3g0092581 27.368 190 108 6 145 333 1 161 1.22e-13 68.9
Msa0164380 MtrunA17_Chr8g0389941 25.510 294 169 11 31 302 37 302 4.20e-13 69.7
Msa0164380 MtrunA17_Chr3g0138351 25.210 238 143 9 116 348 107 314 4.44e-13 69.3
Msa0164380 MtrunA17_Chr4g0004061 20.447 313 198 9 38 339 29 301 8.31e-13 68.6
Msa0164380 MtrunA17_Chr4g0004071 22.222 306 199 9 38 339 29 299 1.54e-12 67.8
Msa0164380 MtrunA17_Chr1g0158021 25.000 220 128 8 38 246 68 261 1.73e-12 66.6
Msa0164380 MtrunA17_Chr8g0336801 29.139 151 78 4 184 331 12 136 2.79e-12 64.3
Msa0164380 MtrunA17_Chr1g0170631 26.768 198 115 6 135 331 3 171 3.29e-12 65.1
Msa0164380 MtrunA17_Chr4g0064771 27.619 210 114 8 129 332 22 199 2.98e-11 62.4
Msa0164380 MtrunA17_Chr8g0336831 29.444 180 100 8 28 191 60 228 6.54e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0164380 AT1G30040.1 59.887 354 117 5 1 351 1 332 6.21e-151 429
Msa0164380 AT2G34555.1 53.693 352 135 4 1 350 1 326 3.46e-131 378
Msa0164380 AT1G78440.1 53.714 350 133 4 1 350 1 321 8.31e-130 375
Msa0164380 AT1G30040.2 61.089 257 93 4 1 254 1 253 2.73e-110 323
Msa0164380 AT1G02400.1 44.785 326 154 4 28 349 24 327 1.98e-93 282
Msa0164380 AT1G47990.1 43.314 344 158 9 14 348 1 316 1.06e-84 259
Msa0164380 AT1G02400.2 46.288 229 116 2 29 254 25 249 1.95e-69 218
Msa0164380 AT1G15550.1 31.105 344 198 9 10 344 40 353 2.14e-45 159
Msa0164380 AT5G08640.2 31.231 333 188 9 11 331 22 325 3.87e-45 158
Msa0164380 AT5G08640.1 31.231 333 188 9 11 331 22 325 3.87e-45 158
Msa0164380 AT2G38240.1 31.210 314 178 10 28 332 48 332 1.37e-42 151
Msa0164380 AT1G80330.1 29.560 318 187 8 28 336 49 338 1.20e-40 146
Msa0164380 AT1G80340.1 29.755 326 191 8 28 344 50 346 3.78e-39 142
Msa0164380 AT3G55970.1 29.664 327 187 10 20 333 47 343 9.34e-39 142
Msa0164380 AT1G78550.1 29.217 332 189 11 22 340 47 345 1.80e-38 140
Msa0164380 AT4G25420.1 28.729 362 205 13 1 340 33 363 9.91e-38 139
Msa0164380 AT4G10500.1 28.267 329 189 11 26 341 42 336 3.95e-37 137
Msa0164380 AT5G07200.1 29.630 351 184 14 19 340 48 364 4.28e-37 137
Msa0164380 AT5G63590.1 29.299 314 184 10 28 332 14 298 1.63e-36 134
Msa0164380 AT5G51810.1 29.971 347 194 15 10 338 44 359 3.99e-36 135
Msa0164380 AT1G17020.1 28.000 325 192 10 28 340 53 347 7.98e-36 134
Msa0164380 AT3G11180.2 27.928 333 194 10 17 332 76 379 1.98e-35 134
Msa0164380 AT5G24530.1 29.179 329 186 11 25 340 35 329 2.05e-35 132
Msa0164380 AT3G11180.1 27.928 333 194 10 17 332 76 379 2.78e-35 133
Msa0164380 AT5G05600.1 27.485 342 198 12 10 332 40 350 5.94e-35 132
Msa0164380 AT3G13610.1 27.666 347 172 11 27 343 61 358 8.26e-35 131
Msa0164380 AT4G25310.1 29.900 301 172 11 45 340 76 342 3.73e-34 129
Msa0164380 AT4G16330.2 28.213 319 185 13 28 337 67 350 5.56e-34 129
Msa0164380 AT5G63600.2 28.866 291 173 8 28 314 33 293 9.78e-34 127
Msa0164380 AT1G44090.1 30.523 344 182 14 12 333 48 356 1.60e-33 128
Msa0164380 AT5G63600.1 28.866 291 172 9 28 314 33 292 1.80e-33 126
Msa0164380 AT1G60980.1 29.464 336 182 14 28 340 57 360 1.88e-33 127
Msa0164380 AT3G12900.1 27.987 318 175 10 28 331 59 336 2.23e-33 127
Msa0164380 AT3G19010.1 29.503 322 177 11 28 328 28 320 2.32e-33 127
Msa0164380 AT3G19010.4 29.503 322 177 11 28 328 28 320 2.32e-33 127
Msa0164380 AT4G25300.1 28.267 329 193 11 24 340 48 345 3.70e-33 126
Msa0164380 AT2G36690.2 29.787 329 185 10 16 331 51 346 5.61e-33 126
Msa0164380 AT2G36690.1 29.787 329 185 10 16 331 51 346 5.61e-33 126
Msa0164380 AT1G17010.1 27.576 330 194 12 24 340 50 347 1.10e-32 125
Msa0164380 AT3G19000.1 29.107 347 187 12 12 328 8 325 1.67e-32 124
Msa0164380 AT1G78550.2 28.136 295 175 9 51 340 5 267 3.44e-32 122
Msa0164380 AT4G21690.1 26.531 343 204 13 19 344 37 348 1.75e-31 122
Msa0164380 AT1G55290.1 27.190 331 173 10 28 336 62 346 1.82e-31 122
Msa0164380 AT4G10490.1 26.444 329 190 11 26 338 40 332 2.51e-31 121
Msa0164380 AT3G55970.2 31.452 248 145 9 20 254 47 282 1.26e-30 118
Msa0164380 AT4G25420.2 30.576 278 161 11 1 259 33 297 1.37e-30 118
Msa0164380 AT3G21420.1 30.154 325 164 12 14 315 41 325 1.56e-30 119
Msa0164380 AT2G44800.1 29.524 315 179 11 28 331 52 334 4.24e-30 118
Msa0164380 AT1G62380.1 28.750 320 173 11 28 333 7 285 5.95e-30 117
Msa0164380 AT3G51240.1 27.445 317 192 10 25 335 43 327 3.73e-29 115
Msa0164380 AT1G12010.1 28.483 323 170 11 28 333 7 285 7.19e-29 114
Msa0164380 AT1G05010.1 30.333 300 167 13 25 315 1 267 8.15e-29 114
Msa0164380 AT1G77330.1 26.727 333 185 13 27 340 2 294 8.56e-29 114
Msa0164380 AT4G21200.1 25.316 316 178 12 30 335 50 317 1.21e-28 114
Msa0164380 AT2G30830.1 28.909 339 180 14 15 333 43 340 1.83e-28 114
Msa0164380 AT5G51810.2 30.502 259 154 11 10 254 44 290 1.05e-27 110
Msa0164380 AT3G60290.1 28.660 321 185 13 22 331 47 334 1.11e-27 111
Msa0164380 AT4G22880.1 26.645 304 178 10 28 315 47 321 1.80e-27 111
Msa0164380 AT4G22880.2 26.645 304 178 10 28 315 47 321 1.80e-27 111
Msa0164380 AT4G22880.3 26.645 304 178 10 28 315 47 321 1.80e-27 111
Msa0164380 AT3G19000.2 29.749 279 156 11 12 260 8 276 1.13e-26 107
Msa0164380 AT5G63580.1 28.571 252 161 7 16 260 7 246 3.46e-26 105
Msa0164380 AT5G59530.1 27.011 348 183 12 28 345 58 364 4.56e-26 107
Msa0164380 AT1G50960.1 27.744 328 180 13 21 333 31 316 4.96e-26 107
Msa0164380 AT5G63580.2 29.675 246 154 7 16 254 7 240 6.06e-26 104
Msa0164380 AT5G05600.2 28.030 264 158 11 10 254 40 290 7.70e-26 105
Msa0164380 AT5G59540.1 26.149 348 188 12 19 340 51 355 1.49e-25 106
Msa0164380 AT5G63595.1 26.948 308 163 10 19 313 9 267 2.09e-25 103
Msa0164380 AT3G19010.2 31.452 248 138 10 28 254 28 264 2.46e-25 104
Msa0164380 AT1G04380.1 27.143 350 190 13 19 345 38 345 1.10e-24 103
Msa0164380 AT3G19010.3 27.389 314 164 11 28 328 28 290 1.95e-24 102
Msa0164380 AT2G19590.1 25.413 303 170 10 28 315 11 272 4.37e-24 100
Msa0164380 AT5G43450.1 24.625 333 185 10 28 338 61 349 5.17e-24 101
Msa0164380 AT5G43935.1 25.610 328 180 10 16 331 7 282 6.70e-24 100
Msa0164380 AT4G25310.2 26.667 300 155 10 45 340 76 314 1.13e-22 97.4
Msa0164380 AT1G49390.1 25.641 312 190 10 28 327 45 326 9.64e-22 95.1
Msa0164380 AT1G06620.1 25.948 343 197 14 15 339 49 352 1.06e-21 95.1
Msa0164380 AT5G43440.1 25.617 324 181 13 28 331 62 345 1.42e-21 94.7
Msa0164380 AT4G23340.1 26.667 315 191 10 28 333 10 293 1.78e-21 94.0
Msa0164380 AT5G20400.1 25.325 308 190 8 28 324 45 323 1.93e-21 94.4
Msa0164380 AT2G25450.1 25.559 313 174 12 3 299 35 304 2.17e-21 94.4
Msa0164380 AT4G16330.1 26.506 249 145 10 92 337 31 244 2.48e-21 92.4
Msa0164380 AT1G06640.1 26.866 335 182 13 20 331 55 349 1.44e-20 92.0
Msa0164380 AT3G61400.1 25.000 348 204 13 14 339 46 358 1.78e-20 91.7
Msa0164380 AT1G49390.2 25.993 277 171 9 55 327 1 247 1.85e-20 90.1
Msa0164380 AT4G25300.2 28.846 208 119 6 134 340 72 251 2.14e-20 89.7
Msa0164380 AT2G30840.1 26.415 371 202 16 3 345 35 362 4.00e-20 90.9
Msa0164380 AT1G06645.1 26.852 324 182 13 25 331 74 359 6.77e-20 90.1
Msa0164380 AT5G54000.2 27.113 284 173 9 45 324 71 324 7.29e-20 89.7
Msa0164380 AT5G20550.1 25.352 284 179 9 45 324 70 324 1.16e-19 89.4
Msa0164380 AT3G51240.2 25.751 233 138 8 106 335 43 243 1.29e-19 87.8
Msa0164380 AT5G07480.1 25.148 338 203 14 12 331 28 333 2.40e-19 88.6
Msa0164380 AT5G59540.2 26.538 260 143 10 19 255 51 285 3.30e-19 87.0
Msa0164380 AT1G03410.2 25.284 352 209 14 14 348 45 359 3.60e-19 87.8
Msa0164380 AT2G19590.2 24.390 287 167 9 38 315 12 257 3.84e-19 87.0
Msa0164380 AT1G03410.1 25.284 352 209 14 14 348 82 396 4.11e-19 88.2
Msa0164380 AT3G49620.1 24.085 328 183 9 44 348 66 350 8.55e-19 86.7
Msa0164380 AT5G54000.1 27.007 274 166 9 55 324 1 244 1.65e-18 84.7
Msa0164380 AT1G04380.2 27.843 255 146 10 19 259 38 268 3.32e-18 84.0
Msa0164380 AT5G43450.2 24.898 245 139 8 28 253 61 279 5.40e-18 83.6
Msa0164380 AT3G49630.3 25.086 291 156 8 44 311 37 288 9.60e-18 83.6
Msa0164380 AT3G49630.1 25.086 291 156 8 44 311 41 292 1.06e-17 83.2
Msa0164380 AT3G61400.2 25.379 264 163 9 14 259 46 293 7.93e-17 80.1
Msa0164380 AT5G43440.2 25.911 247 144 11 28 257 62 286 9.17e-17 80.1
Msa0164380 AT1G03400.1 24.233 326 197 14 28 342 56 342 4.71e-16 79.0
Msa0164380 AT1G06640.2 27.165 254 144 10 20 254 55 286 6.65e-16 78.2
Msa0164380 AT3G50210.4 23.711 291 165 7 32 299 28 284 9.88e-16 77.8
Msa0164380 AT3G50210.1 23.711 291 165 7 32 299 28 284 9.88e-16 77.8
Msa0164380 AT3G50210.3 23.711 291 165 7 32 299 28 284 9.88e-16 77.8
Msa0164380 AT1G06650.1 27.309 249 148 10 20 253 55 285 2.76e-15 76.3
Msa0164380 AT5G51310.1 25.256 293 164 13 28 299 5 263 2.92e-15 76.3
Msa0164380 AT5G12270.1 24.925 333 182 15 28 336 56 344 1.49e-14 74.3
Msa0164380 AT3G47190.1 23.448 290 174 9 28 302 32 288 2.26e-13 70.5
Msa0164380 AT1G52820.1 21.166 326 205 13 28 337 12 301 7.38e-13 68.9
Msa0164380 AT4G23340.2 27.632 152 86 4 183 333 47 175 5.40e-11 62.0
Msa0164380 AT5G07480.2 25.346 217 127 9 121 331 37 224 5.59e-11 62.8

Find 95 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGAATTTATGTCCAATT+TGG 0.176730 1_4:-43767314 Msa0164380:CDS
GTGAAGGCTTGTAAGGAATT+TGG 0.190043 1_4:-43767367 Msa0164380:CDS
GAATGTTGGCACATGATATT+TGG 0.221993 1_4:-43765355 Msa0164380:three_prime_UTR
GAAGGAATTTGCTTGGGTTT+GGG 0.238321 1_4:-43766359 Msa0164380:CDS
GAATTAATGGCTGATGGGTT+GGG 0.283453 1_4:-43766495 Msa0164380:CDS
CTGTCTAGTGTTGGAATTAA+TGG 0.285143 1_4:-43766508 Msa0164380:CDS
GCTGGTCCTCCTGATCCTTT+TGG 0.285305 1_4:-43767241 Msa0164380:CDS
GGAAGGAATTTGCTTGGGTT+TGG 0.286862 1_4:-43766360 Msa0164380:CDS
ATATGTTGGTGATACTCTTC+AGG 0.308745 1_4:-43766163 Msa0164380:intron
AAGTGTAAAGCATAGGGTTT+TGG 0.313870 1_4:-43765607 Msa0164380:CDS
GAGATGAAGGGTGCTTTAAA+TGG 0.318506 1_4:+43767592 None:intergenic
TCATTGCAATAACAATATAA+AGG 0.326503 1_4:+43765168 None:intergenic
CCATTCAACAAAGTTGTTGA+TGG 0.337243 1_4:+43767436 None:intergenic
CAATGTTGGTGATACTCTTC+AGG 0.338711 1_4:-43766217 Msa0164380:CDS
GTGAAAATCGACAAAATCTA+AGG 0.347346 1_4:-43767111 Msa0164380:intron
AATGCTGCTTGTTGCACCTC+AGG 0.352397 1_4:+43766387 None:intergenic
TTCCATCAGTGAGACAGATT+TGG 0.358775 1_4:+43766280 None:intergenic
TTTGTTTATTCATTTATCTA+TGG 0.360253 1_4:-43765233 Msa0164380:three_prime_UTR
AACTTGCTTAACACATTCCT+TGG 0.383795 1_4:+43766465 None:intergenic
TCTTATAGTGAAGGCTTGTA+AGG 0.396887 1_4:-43767374 Msa0164380:CDS
TTTATATATAGAAAGTGAAT+AGG 0.406950 1_4:-43765270 Msa0164380:three_prime_UTR
GGAATTAATGGCTGATGGGT+TGG 0.408971 1_4:-43766496 Msa0164380:CDS
CCATCAACAACTTTGTTGAA+TGG 0.414722 1_4:-43767436 Msa0164380:CDS
AATTAATGGCTGATGGGTTG+GGG 0.422524 1_4:-43766494 Msa0164380:CDS
AGTAAGAGAATTGGTTCAAA+TGG 0.422764 1_4:-43767211 Msa0164380:CDS
GACTTGTTAGAGATAACGTC+AGG 0.423293 1_4:+43767148 None:intergenic
TTCAAATGGTGATGTTGGTT+GGG 0.425962 1_4:-43767197 Msa0164380:CDS
ATGGTAATGCATGAAAGTTA+AGG 0.426614 1_4:+43767619 None:intergenic
GGTTATGGAAGTAAGAGAAT+TGG 0.429063 1_4:-43767220 Msa0164380:CDS
CGATTAGATATGTTATATGT+TGG 0.429113 1_4:-43766177 Msa0164380:CDS
AGAAAGCAATGTACAATTCA+AGG 0.429933 1_4:-43765449 Msa0164380:CDS
GGGTGCTTTAAATGGAGAAA+TGG 0.430321 1_4:+43767600 None:intergenic
TCTGTCTCACTGATGGAACT+TGG 0.437034 1_4:-43766275 Msa0164380:CDS
AGGCTGGCTGATTATAGACT+TGG 0.452611 1_4:-43765429 Msa0164380:CDS
GTTCAAATGGTGATGTTGGT+TGG 0.453207 1_4:-43767198 Msa0164380:CDS
AGTAAGAAATTATTTAATGT+TGG 0.456630 1_4:+43767475 None:intergenic
CCTCAGGGCACGGTGGGTAA+TGG 0.461056 1_4:+43766403 None:intergenic
CTCTTACTTCCATAACCAAA+AGG 0.467266 1_4:+43767226 None:intergenic
AAGGAATTTGCTTGGGTTTG+GGG 0.471960 1_4:-43766358 Msa0164380:CDS
TGGTAATGCATGAAAGTTAA+GGG 0.476855 1_4:+43767620 None:intergenic
TTGAGATCTAATAGCACATC+AGG 0.476870 1_4:-43766306 Msa0164380:CDS
TCAAGACAGAAATGACTTGT+GGG 0.478331 1_4:+43766325 None:intergenic
TGAATGGAAGGAATTTGCTT+GGG 0.478641 1_4:-43766365 Msa0164380:CDS
CTTCCATAACCAAAAGGATC+AGG 0.481337 1_4:+43767232 None:intergenic
TTTAACATTAAAGATGGTAA+AGG 0.484574 1_4:+43765516 None:intergenic
ATTGGTTCAAATGGTGATGT+TGG 0.487540 1_4:-43767202 Msa0164380:CDS
GTTTAAAAGTGTAAAGCATA+GGG 0.491250 1_4:-43765613 Msa0164380:CDS
ATTTGGAAAATGAAGCACTA+AGG 0.493754 1_4:-43767297 Msa0164380:CDS
TTGAATGGAAGGAATTTGCT+TGG 0.495411 1_4:-43766366 Msa0164380:CDS
TTGATGCAGGTATTGACTAA+TGG 0.496751 1_4:-43765639 Msa0164380:intron
AGATGAAAGCAATATAAGAA+AGG 0.499006 1_4:+43767551 None:intergenic
ATGCTGCTTGTTGCACCTCA+GGG 0.501968 1_4:+43766388 None:intergenic
GCTTGTTGCACCTCAGGGCA+CGG 0.503859 1_4:+43766393 None:intergenic
CGTGAACCATGGTGTTCCAT+TGG 0.506236 1_4:-43767332 Msa0164380:CDS
GCTCTGTCTTTCTCTGACTG+TGG 0.508511 1_4:+43767262 None:intergenic
TGTCGTCGACCTTGCAGACC+CGG 0.509378 1_4:-43767407 Msa0164380:CDS
GTGCAACAAGCAGCATTGAA+TGG 0.509603 1_4:-43766381 Msa0164380:CDS
GGTTTAAAAGTGTAAAGCAT+AGG 0.510882 1_4:-43765614 Msa0164380:CDS
CTGTCTCACTGATGGAACTT+GGG 0.516008 1_4:-43766274 Msa0164380:CDS
CTCCAAATCTGTCTCACTGA+TGG 0.526180 1_4:-43766282 Msa0164380:CDS
AATTATATAGATGACCCATC+TGG 0.527398 1_4:+43767655 None:intergenic
AAGCAATATAAGAAAGGAGG+AGG 0.531160 1_4:+43767557 None:intergenic
GTGTTGGAATTAATGGCTGA+TGG 0.531290 1_4:-43766501 Msa0164380:CDS
CGTCAGGGTTAGTATTAAGA+AGG 0.535935 1_4:+43767164 None:intergenic
AACAAGCAGCATTGAATGGA+AGG 0.537153 1_4:-43766377 Msa0164380:CDS
GGCTGGCTGATTATAGACTT+GGG 0.538279 1_4:-43765428 Msa0164380:CDS
AGGTTGTCGATGATATACTT+TGG 0.551047 1_4:-43765567 Msa0164380:CDS
GTACAAAGAGTTCACGTGGT+TGG 0.551890 1_4:-43765478 Msa0164380:CDS
CTCAAGACAGAAATGACTTG+TGG 0.553027 1_4:+43766324 None:intergenic
TGAAAGCAATATAAGAAAGG+AGG 0.556587 1_4:+43767554 None:intergenic
GCTATTATGTAGGTCTGCTG+TGG 0.561033 1_4:-43766562 Msa0164380:intron
GGGTCTGCAAGGTCGACGAC+AGG 0.566966 1_4:+43767409 None:intergenic
GAAAATGTGCTGTCTAGTGT+TGG 0.570738 1_4:-43766517 Msa0164380:CDS
AAATTGGACATAAATTCCAA+TGG 0.573440 1_4:+43767316 None:intergenic
AGCAATGTACAATTCAAGGC+TGG 0.573618 1_4:-43765445 Msa0164380:CDS
TTGTCGATGATATACTTTGG+AGG 0.583079 1_4:-43765564 Msa0164380:CDS
GGTGACAATGAGAGCCAGAT+GGG 0.584164 1_4:-43767669 None:intergenic
AGGTGACAATGAGAGCCAGA+TGG 0.591385 1_4:-43767670 None:intergenic
GTTGCACCTCAGGGCACGGT+GGG 0.593851 1_4:+43766397 None:intergenic
TGTTGGAATTAATGGCTGAT+GGG 0.595328 1_4:-43766500 Msa0164380:CDS
TGGCTGACACAACAAAGTCA+AGG 0.599938 1_4:-43765587 Msa0164380:CDS
TGCAGGTATTGACTAATGGT+AGG 0.608292 1_4:-43765635 Msa0164380:intron
AATGCATGAAAGTTAAGGGA+GGG 0.613781 1_4:+43767624 None:intergenic
CAGTCAGAGAAAGACAGAGC+TGG 0.620304 1_4:-43767259 Msa0164380:CDS
ATGCATGAAAGTTAAGGGAG+GGG 0.628931 1_4:+43767625 None:intergenic
ATGGGTTGGGGATTGAGCCA+AGG 0.632929 1_4:-43766482 Msa0164380:CDS
TTCTTCAAAGTCGTGAACCA+TGG 0.633954 1_4:-43767343 Msa0164380:CDS
GTTTGTACAAAGAGTTCACG+TGG 0.638221 1_4:-43765482 Msa0164380:CDS
TGTTGCACCTCAGGGCACGG+TGG 0.643786 1_4:+43766396 None:intergenic
TGGCTTAGACAAAACAACCA+TGG 0.648574 1_4:+43767495 None:intergenic
CCATAACCAAAAGGATCAGG+AGG 0.661844 1_4:+43767235 None:intergenic
CCATTACCCACCGTGCCCTG+AGG 0.673400 1_4:-43766403 Msa0164380:CDS
TAATGCATGAAAGTTAAGGG+AGG 0.691955 1_4:+43767623 None:intergenic
ACTTGTTAGAGATAACGTCA+GGG 0.697299 1_4:+43767149 None:intergenic
TAAATTCCAATGGAACACCA+TGG 0.713883 1_4:+43767326 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTTTTTTATACTAAAA+AGG + chr1_4:43767056-43767075 None:intergenic 10.0%
!! AGTAAGAAATTATTTAATGT+TGG + chr1_4:43765344-43765363 None:intergenic 15.0%
!! TTTATTCTTTATTAGTCATT+TGG + chr1_4:43765861-43765880 None:intergenic 15.0%
!! TTGTAAAATTGAAAATTGTA+CGG - chr1_4:43765902-43765921 Msa0164380:intron 15.0%
!! ATGAATAAAAAAAAGGTTAA+AGG + chr1_4:43766753-43766772 None:intergenic 15.0%
!!! TATTTTTCTCTTTTTAAATG+TGG - chr1_4:43767008-43767027 Msa0164380:intron 15.0%
!!! TCTTTTTTTAACATTAAAGA+TGG + chr1_4:43767309-43767328 None:intergenic 15.0%
!! TTTATATATAGAAAGTGAAT+AGG - chr1_4:43767546-43767565 Msa0164380:five_prime_UTR 15.0%
!! TTTGTTTATTCATTTATCTA+TGG - chr1_4:43767583-43767602 Msa0164380:five_prime_UTR 15.0%
!!! TGGTTTAATTGTTTTAATCA+TGG - chr1_4:43765830-43765849 Msa0164380:intron 20.0%
!! TTATACCAAGTTGTAAAAAA+TGG + chr1_4:43766094-43766113 None:intergenic 20.0%
!! ATGTGTAATTTATACATGTT+TGG + chr1_4:43766185-43766204 None:intergenic 20.0%
!!! GAGTCTTATGAATAAAAAAA+AGG + chr1_4:43766760-43766779 None:intergenic 20.0%
!! ATTTAATGATCGACATTAAT+TGG + chr1_4:43766898-43766917 None:intergenic 20.0%
!! AATTTAAATGGAATACATGT+GGG + chr1_4:43767083-43767102 None:intergenic 20.0%
!! AAATTTAAATGGAATACATG+TGG + chr1_4:43767084-43767103 None:intergenic 20.0%
!!! TCCATTTAAATTTTTTGAAG+TGG - chr1_4:43767091-43767110 Msa0164380:intron 20.0%
!!! CCATTTAAATTTTTTGAAGT+GGG - chr1_4:43767092-43767111 Msa0164380:intron 20.0%
!!! CATTTAAATTTTTTGAAGTG+GGG - chr1_4:43767093-43767112 Msa0164380:intron 20.0%
!!! ATTTAAATTTTTTGAAGTGG+GGG - chr1_4:43767094-43767113 Msa0164380:intron 20.0%
!! TTTAACATTAAAGATGGTAA+AGG + chr1_4:43767303-43767322 None:intergenic 20.0%
!! TCATTGCAATAACAATATAA+AGG + chr1_4:43767651-43767670 None:intergenic 20.0%
! AGAAGAAAAATAGAGATGAA+GGG + chr1_4:43765239-43765258 None:intergenic 25.0%
! AGATGAAAGCAATATAAGAA+AGG + chr1_4:43765268-43765287 None:intergenic 25.0%
! AAATTGGACATAAATTCCAA+TGG + chr1_4:43765503-43765522 None:intergenic 25.0%
! ATTGGAATTTATGTCCAATT+TGG - chr1_4:43765502-43765521 Msa0164380:CDS 25.0%
!!! TTAGATTTTGTCGATTTTCA+CGG + chr1_4:43765706-43765725 None:intergenic 25.0%
! AACATTGAAAAGGAAAAACA+GGG + chr1_4:43765766-43765785 None:intergenic 25.0%
!!! CTTTTCAATGTTGATAAAAC+CGG - chr1_4:43765774-43765793 Msa0164380:intron 25.0%
!! TTCTAAACCAATTTTTATCG+TGG + chr1_4:43766052-43766071 None:intergenic 25.0%
!! GGTTTAGAATTAATTTCAAC+CGG - chr1_4:43766063-43766082 Msa0164380:intron 25.0%
! AACTTGGTATAATGTATGTT+TGG - chr1_4:43766102-43766121 Msa0164380:intron 25.0%
! ACAAAAGTGAATCCATTATA+AGG - chr1_4:43766135-43766154 Msa0164380:intron 25.0%
! TAGAGATAACATCCTTATAA+TGG + chr1_4:43766150-43766169 None:intergenic 25.0%
! TAAACACATAACTAACATGA+GGG + chr1_4:43766210-43766229 None:intergenic 25.0%
! ATAAACACATAACTAACATG+AGG + chr1_4:43766211-43766230 None:intergenic 25.0%
!!! ACTTCTTTTTTCATCAATGT+TGG - chr1_4:43766585-43766604 Msa0164380:intron 25.0%
! CGATTAGATATGTTATATGT+TGG - chr1_4:43766639-43766658 Msa0164380:intron 25.0%
! AGAAAAATAATTGAGAGACT+TGG + chr1_4:43766997-43767016 None:intergenic 25.0%
! CCCACTTCAAAAAATTTAAA+TGG + chr1_4:43767095-43767114 None:intergenic 25.0%
!! GTTTAAAAGTGTAAAGCATA+GGG - chr1_4:43767203-43767222 Msa0164380:CDS 25.0%
!!! TTGCCATAAGATTTTTCAAA+AGG + chr1_4:43767414-43767433 None:intergenic 25.0%
!!! CAACATTCAGAATTTTTTTG+AGG + chr1_4:43767449-43767468 None:intergenic 25.0%
! CTCAAAAAAATTCTGAATGT+TGG - chr1_4:43767447-43767466 Msa0164380:CDS 25.0%
AATTATATAGATGACCCATC+TGG + chr1_4:43765164-43765183 None:intergenic 30.0%
! TGGTAATGCATGAAAGTTAA+GGG + chr1_4:43765199-43765218 None:intergenic 30.0%
! ATGGTAATGCATGAAAGTTA+AGG + chr1_4:43765200-43765219 None:intergenic 30.0%
GAGAAGAAAAATAGAGATGA+AGG + chr1_4:43765240-43765259 None:intergenic 30.0%
TGAAAGCAATATAAGAAAGG+AGG + chr1_4:43765265-43765284 None:intergenic 30.0%
!!! AACCATGGTTTTGTTTTTTG+GGG + chr1_4:43765309-43765328 None:intergenic 30.0%
!!! CAACCATGGTTTTGTTTTTT+GGG + chr1_4:43765310-43765329 None:intergenic 30.0%
!!! ACAACCATGGTTTTGTTTTT+TGG + chr1_4:43765311-43765330 None:intergenic 30.0%
! ACTATAAGAGTTTTTGCTTC+CGG + chr1_4:43765431-43765450 None:intergenic 30.0%
AGCAAAAACTCTTATAGTGA+AGG - chr1_4:43765433-43765452 Msa0164380:CDS 30.0%
! TAGTGCTTCATTTTCCAAAT+TGG + chr1_4:43765519-43765538 None:intergenic 30.0%
! ATTTGGAAAATGAAGCACTA+AGG - chr1_4:43765519-43765538 Msa0164380:CDS 30.0%
! AGTAAGAGAATTGGTTCAAA+TGG - chr1_4:43765605-43765624 Msa0164380:CDS 30.0%
GTGAAAATCGACAAAATCTA+AGG - chr1_4:43765705-43765724 Msa0164380:intron 30.0%
ACATTGAAAAGGAAAAACAG+GGG + chr1_4:43765765-43765784 None:intergenic 30.0%
CAACATTGAAAAGGAAAAAC+AGG + chr1_4:43765767-43765786 None:intergenic 30.0%
!! CGGTTTTATCAACATTGAAA+AGG + chr1_4:43765776-43765795 None:intergenic 30.0%
CCATAAACTGAAAATCTCAT+CGG + chr1_4:43765813-43765832 None:intergenic 30.0%
TCATGTTGTGAAAATTAGAC+CGG + chr1_4:43766007-43766026 None:intergenic 30.0%
! AGTTTTGCCACGATAAAAAT+TGG - chr1_4:43766042-43766061 Msa0164380:intron 30.0%
TAGAATTAATTTCAACCGGT+TGG - chr1_4:43766067-43766086 Msa0164380:intron 30.0%
!!! TTGGTCCATTTTTTACAACT+TGG - chr1_4:43766086-43766105 Msa0164380:intron 30.0%
!!! GCTACTTTTTGCTATTATGT+AGG - chr1_4:43766244-43766263 Msa0164380:CDS 30.0%
! ATGAAAAAAGAAGTGTGATC+AGG + chr1_4:43766579-43766598 None:intergenic 30.0%
GGTTATCAAACATTCTAACT+TGG - chr1_4:43767128-43767147 Msa0164380:CDS 30.0%
! GGTTTAAAAGTGTAAAGCAT+AGG - chr1_4:43767202-43767221 Msa0164380:CDS 30.0%
AGAAAGCAATGTACAATTCA+AGG - chr1_4:43767367-43767386 Msa0164380:CDS 30.0%
!! TGATATTTGGCCTTTCTTTT+TGG - chr1_4:43767474-43767493 Msa0164380:CDS 30.0%
!! GATATTTGGCCTTTCTTTTT+GGG - chr1_4:43767475-43767494 Msa0164380:CDS 30.0%
AAAAAAGTAGAGTCAACTGT+TGG + chr1_4:43767518-43767537 None:intergenic 30.0%
AATGCATGAAAGTTAAGGGA+GGG + chr1_4:43765195-43765214 None:intergenic 35.0%
TAATGCATGAAAGTTAAGGG+AGG + chr1_4:43765196-43765215 None:intergenic 35.0%
AAGCAATATAAGAAAGGAGG+AGG + chr1_4:43765262-43765281 None:intergenic 35.0%
TACCCCAAAAAACAAAACCA+TGG - chr1_4:43765304-43765323 Msa0164380:three_prime_UTR 35.0%
CCATTCAACAAAGTTGTTGA+TGG + chr1_4:43765383-43765402 None:intergenic 35.0%
CCATCAACAACTTTGTTGAA+TGG - chr1_4:43765380-43765399 Msa0164380:three_prime_UTR 35.0%
! CTATAAGAGTTTTTGCTTCC+GGG + chr1_4:43765430-43765449 None:intergenic 35.0%
TCTTATAGTGAAGGCTTGTA+AGG - chr1_4:43765442-43765461 Msa0164380:CDS 35.0%
TAAATTCCAATGGAACACCA+TGG + chr1_4:43765493-43765512 None:intergenic 35.0%
CTCTTACTTCCATAACCAAA+AGG + chr1_4:43765593-43765612 None:intergenic 35.0%
GGTTATGGAAGTAAGAGAAT+TGG - chr1_4:43765596-43765615 Msa0164380:CDS 35.0%
! ATTGGTTCAAATGGTGATGT+TGG - chr1_4:43765614-43765633 Msa0164380:CDS 35.0%
! TTCAAATGGTGATGTTGGTT+GGG - chr1_4:43765619-43765638 Msa0164380:CDS 35.0%
! ACTTGTTAGAGATAACGTCA+GGG + chr1_4:43765670-43765689 None:intergenic 35.0%
!!! TTGTCGATTTTCACGGTAAA+AGG + chr1_4:43765699-43765718 None:intergenic 35.0%
! CCGATGAGATTTTCAGTTTA+TGG - chr1_4:43765810-43765829 Msa0164380:intron 35.0%
GTTGTAAAAAATGGACCAAC+CGG + chr1_4:43766085-43766104 None:intergenic 35.0%
!!! TAATGGATTCACTTTTGTCG+TGG + chr1_4:43766133-43766152 None:intergenic 35.0%
! CTGTCTAGTGTTGGAATTAA+TGG - chr1_4:43766308-43766327 Msa0164380:CDS 35.0%
TGTTGGAATTAATGGCTGAT+GGG - chr1_4:43766316-43766335 Msa0164380:CDS 35.0%
! AACTTGCTTAACACATTCCT+TGG + chr1_4:43766354-43766373 None:intergenic 35.0%
! TTGAATGGAAGGAATTTGCT+TGG - chr1_4:43766450-43766469 Msa0164380:CDS 35.0%
! TGAATGGAAGGAATTTGCTT+GGG - chr1_4:43766451-43766470 Msa0164380:CDS 35.0%
! TCAAGACAGAAATGACTTGT+GGG + chr1_4:43766494-43766513 None:intergenic 35.0%
TTGAGATCTAATAGCACATC+AGG - chr1_4:43766510-43766529 Msa0164380:CDS 35.0%
! AAAAAAGAAGTGTGATCAGG+TGG + chr1_4:43766576-43766595 None:intergenic 35.0%
!! ATATGTTGGTGATACTCTTC+AGG - chr1_4:43766653-43766672 Msa0164380:intron 35.0%
CAGTCTTTGAATTGATCGAA+TGG + chr1_4:43766938-43766957 None:intergenic 35.0%
CATTCGATCAATTCAAAGAC+TGG - chr1_4:43766936-43766955 Msa0164380:intron 35.0%
!! TTGATGCAGGTATTGACTAA+TGG - chr1_4:43767177-43767196 Msa0164380:CDS 35.0%
! AAGTGTAAAGCATAGGGTTT+TGG - chr1_4:43767209-43767228 Msa0164380:CDS 35.0%
AGGTTGTCGATGATATACTT+TGG - chr1_4:43767249-43767268 Msa0164380:CDS 35.0%
TTGTCGATGATATACTTTGG+AGG - chr1_4:43767252-43767271 Msa0164380:CDS 35.0%
! GGTACTATCTTTTCACTCAA+GGG + chr1_4:43767282-43767301 None:intergenic 35.0%
! AGGTACTATCTTTTCACTCA+AGG + chr1_4:43767283-43767302 None:intergenic 35.0%
!! GGGCCTTTTGAAAAATCTTA+TGG - chr1_4:43767408-43767427 Msa0164380:CDS 35.0%
GAATGTTGGCACATGATATT+TGG - chr1_4:43767461-43767480 Msa0164380:CDS 35.0%
ATGCATGAAAGTTAAGGGAG+GGG + chr1_4:43765194-43765213 None:intergenic 40.0%
! GGGTGCTTTAAATGGAGAAA+TGG + chr1_4:43765219-43765238 None:intergenic 40.0%
!! GAGATGAAGGGTGCTTTAAA+TGG + chr1_4:43765227-43765246 None:intergenic 40.0%
TGGCTTAGACAAAACAACCA+TGG + chr1_4:43765324-43765343 None:intergenic 40.0%
GTGAAGGCTTGTAAGGAATT+TGG - chr1_4:43765449-43765468 Msa0164380:CDS 40.0%
TTCTTCAAAGTCGTGAACCA+TGG - chr1_4:43765473-43765492 Msa0164380:CDS 40.0%
CTTCCATAACCAAAAGGATC+AGG + chr1_4:43765587-43765606 None:intergenic 40.0%
! GTTCAAATGGTGATGTTGGT+TGG - chr1_4:43765618-43765637 Msa0164380:CDS 40.0%
! CGTCAGGGTTAGTATTAAGA+AGG + chr1_4:43765655-43765674 None:intergenic 40.0%
!! GACTTGTTAGAGATAACGTC+AGG + chr1_4:43765671-43765690 None:intergenic 40.0%
GAAAATGTGCTGTCTAGTGT+TGG - chr1_4:43766299-43766318 Msa0164380:CDS 40.0%
GTGTTGGAATTAATGGCTGA+TGG - chr1_4:43766315-43766334 Msa0164380:CDS 40.0%
!! GAATTAATGGCTGATGGGTT+GGG - chr1_4:43766321-43766340 Msa0164380:CDS 40.0%
!! AATTAATGGCTGATGGGTTG+GGG - chr1_4:43766322-43766341 Msa0164380:CDS 40.0%
! AACAAGCAGCATTGAATGGA+AGG - chr1_4:43766439-43766458 Msa0164380:CDS 40.0%
! GAAGGAATTTGCTTGGGTTT+GGG - chr1_4:43766457-43766476 Msa0164380:CDS 40.0%
! AAGGAATTTGCTTGGGTTTG+GGG - chr1_4:43766458-43766477 Msa0164380:CDS 40.0%
CTCAAGACAGAAATGACTTG+TGG + chr1_4:43766495-43766514 None:intergenic 40.0%
TTCCATCAGTGAGACAGATT+TGG + chr1_4:43766539-43766558 None:intergenic 40.0%
!! CAATGTTGGTGATACTCTTC+AGG - chr1_4:43766599-43766618 Msa0164380:intron 40.0%
GTATATGTCGAGAAAGGTCT+TGG + chr1_4:43766787-43766806 None:intergenic 40.0%
TGACTCGTATATGTCGAGAA+AGG + chr1_4:43766793-43766812 None:intergenic 40.0%
GACATATACGAGTCATGTTC+TGG - chr1_4:43766798-43766817 Msa0164380:intron 40.0%
! GATCAAGTTGCAAATCGTAG+AGG - chr1_4:43766969-43766988 Msa0164380:intron 40.0%
TTGGTTATGTCATGTGTGTG+TGG - chr1_4:43767147-43767166 Msa0164380:CDS 40.0%
TGGTTATGTCATGTGTGTGT+GGG - chr1_4:43767148-43767167 Msa0164380:CDS 40.0%
!! TGCAGGTATTGACTAATGGT+AGG - chr1_4:43767181-43767200 Msa0164380:CDS 40.0%
! ACTATCTTTTCACTCAAGGG+TGG + chr1_4:43767279-43767298 None:intergenic 40.0%
GTTTGTACAAAGAGTTCACG+TGG - chr1_4:43767334-43767353 Msa0164380:CDS 40.0%
AGCAATGTACAATTCAAGGC+TGG - chr1_4:43767371-43767390 Msa0164380:CDS 40.0%
CCATAACCAAAAGGATCAGG+AGG + chr1_4:43765584-43765603 None:intergenic 45.0%
!! CCTCCTGATCCTTTTGGTTA+TGG - chr1_4:43765581-43765600 Msa0164380:CDS 45.0%
TTGTACGGTTGAACAAACCG+CGG - chr1_4:43765917-43765936 Msa0164380:intron 45.0%
ACGGTCAATAGTCCTATAGC+GGG + chr1_4:43765948-43765967 None:intergenic 45.0%
CACGGTCAATAGTCCTATAG+CGG + chr1_4:43765949-43765968 None:intergenic 45.0%
GTTGTGAAAATTAGACCGGC+CGG + chr1_4:43766003-43766022 None:intergenic 45.0%
GCTATTATGTAGGTCTGCTG+TGG - chr1_4:43766254-43766273 Msa0164380:CDS 45.0%
! GGAATTAATGGCTGATGGGT+TGG - chr1_4:43766320-43766339 Msa0164380:CDS 45.0%
! GTGCAACAAGCAGCATTGAA+TGG - chr1_4:43766435-43766454 Msa0164380:CDS 45.0%
! GGAAGGAATTTGCTTGGGTT+TGG - chr1_4:43766456-43766475 Msa0164380:CDS 45.0%
CTCCAAATCTGTCTCACTGA+TGG - chr1_4:43766534-43766553 Msa0164380:CDS 45.0%
TCTGTCTCACTGATGGAACT+TGG - chr1_4:43766541-43766560 Msa0164380:CDS 45.0%
CTGTCTCACTGATGGAACTT+GGG - chr1_4:43766542-43766561 Msa0164380:CDS 45.0%
! TGAAGTGGGGGTCTGTTTTA+AGG - chr1_4:43767106-43767125 Msa0164380:intron 45.0%
!! GAAGTGGGGGTCTGTTTTAA+GGG - chr1_4:43767107-43767126 Msa0164380:intron 45.0%
! GTGTGGGTTGAAATTGATGC+AGG - chr1_4:43767164-43767183 Msa0164380:CDS 45.0%
TGGCTGACACAACAAAGTCA+AGG - chr1_4:43767229-43767248 Msa0164380:CDS 45.0%
GTACAAAGAGTTCACGTGGT+TGG - chr1_4:43767338-43767357 Msa0164380:CDS 45.0%
! AGGCTGGCTGATTATAGACT+TGG - chr1_4:43767387-43767406 Msa0164380:CDS 45.0%
! GGCTGGCTGATTATAGACTT+GGG - chr1_4:43767388-43767407 Msa0164380:CDS 45.0%
ACGCGTACACCCAAAAAGAA+AGG + chr1_4:43767487-43767506 None:intergenic 45.0%
!!! TCTTTTTGGGTGTACGCGTT+TGG - chr1_4:43767488-43767507 Msa0164380:CDS 45.0%
!!! CTTTTTGGGTGTACGCGTTT+GGG - chr1_4:43767489-43767508 Msa0164380:CDS 45.0%
! TTTTTGCTTCCGGGTCTGCA+AGG + chr1_4:43765421-43765440 None:intergenic 50.0%
CGTGAACCATGGTGTTCCAT+TGG - chr1_4:43765484-43765503 Msa0164380:CDS 50.0%
GCTCTGTCTTTCTCTGACTG+TGG + chr1_4:43765557-43765576 None:intergenic 50.0%
CAGTCAGAGAAAGACAGAGC+TGG - chr1_4:43765557-43765576 Msa0164380:CDS 50.0%
!! CATCGGTTCGATCACTGTTC+CGG + chr1_4:43765796-43765815 None:intergenic 50.0%
ACCGTGTTTGAACCAACAGC+CGG - chr1_4:43765963-43765982 Msa0164380:intron 50.0%
! ATGCTGCTTGTTGCACCTCA+GGG + chr1_4:43766431-43766450 None:intergenic 50.0%
! AATGCTGCTTGTTGCACCTC+AGG + chr1_4:43766432-43766451 None:intergenic 50.0%
! GCTGGTCCTCCTGATCCTTT+TGG - chr1_4:43765575-43765594 Msa0164380:CDS 55.0%
!! CCCGGCTGTTGGTTCAAACA+CGG + chr1_4:43765967-43765986 None:intergenic 55.0%
CCGTGTTTGAACCAACAGCC+GGG - chr1_4:43765964-43765983 Msa0164380:intron 55.0%
!! ATGGGTTGGGGATTGAGCCA+AGG - chr1_4:43766334-43766353 Msa0164380:CDS 55.0%
TGTCGTCGACCTTGCAGACC+CGG - chr1_4:43765409-43765428 Msa0164380:CDS 60.0%
!! TCCTATAGCGGGTTGAGCCG+CGG + chr1_4:43765937-43765956 None:intergenic 60.0%
GTTTGAACCAACAGCCGGGC+TGG - chr1_4:43765968-43765987 Msa0164380:intron 60.0%
! GCTTGTTGCACCTCAGGGCA+CGG + chr1_4:43766426-43766445 None:intergenic 60.0%
GGGTCTGCAAGGTCGACGAC+AGG + chr1_4:43765410-43765429 None:intergenic 65.0%
ACCGCGGCTCAACCCGCTAT+AGG - chr1_4:43765933-43765952 Msa0164380:intron 65.0%
CCTCAGGGCACGGTGGGTAA+TGG + chr1_4:43766416-43766435 None:intergenic 65.0%
CCATTACCCACCGTGCCCTG+AGG - chr1_4:43766413-43766432 Msa0164380:CDS 65.0%
GTTGCACCTCAGGGCACGGT+GGG + chr1_4:43766422-43766441 None:intergenic 65.0%
TGTTGCACCTCAGGGCACGG+TGG + chr1_4:43766423-43766442 None:intergenic 65.0%
!! GAACCAACAGCCGGGCTGGC+TGG - chr1_4:43765972-43765991 Msa0164380:intron 70.0%
CAACCAGCCAGCCCGGCTGT+TGG + chr1_4:43765978-43765997 None:intergenic 70.0%
!! GCCGGGCTGGCTGGTTGAAC+CGG - chr1_4:43765981-43766000 Msa0164380:intron 70.0%
! GCCGGTTCAACCAGCCAGCC+CGG + chr1_4:43765985-43766004 None:intergenic 70.0%
! GGCTGGCTGGTTGAACCGGC+CGG - chr1_4:43765985-43766004 Msa0164380:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 43765160 43767678 43765160 ID=Msa0164380;Name=Msa0164380
chr1_4 mRNA 43765160 43767678 43765160 ID=Msa0164380-mRNA-1;Parent=Msa0164380;Name=Msa0164380-mRNA-1;_AED=0.08;_eAED=0.08;_QI=163|0.5|0.66|1|1|1|3|241|354
chr1_4 exon 43765160 43765652 43765160 ID=Msa0164380-mRNA-1:exon:12528;Parent=Msa0164380-mRNA-1
chr1_4 exon 43766164 43766572 43766164 ID=Msa0164380-mRNA-1:exon:12527;Parent=Msa0164380-mRNA-1
chr1_4 exon 43767112 43767678 43767112 ID=Msa0164380-mRNA-1:exon:12526;Parent=Msa0164380-mRNA-1
chr1_4 five_prime_UTR 43767516 43767678 43767516 ID=Msa0164380-mRNA-1:five_prime_utr;Parent=Msa0164380-mRNA-1
chr1_4 CDS 43767112 43767515 43767112 ID=Msa0164380-mRNA-1:cds;Parent=Msa0164380-mRNA-1
chr1_4 CDS 43766164 43766572 43766164 ID=Msa0164380-mRNA-1:cds;Parent=Msa0164380-mRNA-1
chr1_4 CDS 43765401 43765652 43765401 ID=Msa0164380-mRNA-1:cds;Parent=Msa0164380-mRNA-1
chr1_4 three_prime_UTR 43765160 43765400 43765160 ID=Msa0164380-mRNA-1:three_prime_utr;Parent=Msa0164380-mRNA-1
Gene Sequence

>Msa0164380

ATGGTTGTTTTGTCTAAGCCAACATTAAATAATTTCTTACTTGTCAAGTCATGCAAACCATCAACAACTTTGTTGAATGGTATTCCTGTCGTCGACCTTGCAGACCCGGAAGCAAAAACTCTTATAGTGAAGGCTTGTAAGGAATTTGGATTCTTCAAAGTCGTGAACCATGGTGTTCCATTGGAATTTATGTCCAATTTGGAAAATGAAGCACTAAGGTTTTTCAAAAAACCACAGTCAGAGAAAGACAGAGCTGGTCCTCCTGATCCTTTTGGTTATGGAAGTAAGAGAATTGGTTCAAATGGTGATGTTGGTTGGGTTGAATATATCCTTCTTAATACTAACCCTGACGTTATCTCTAACAAGTCTCTTTCCTTTTACCGTGAAAATCGACAAAATCTAAGGTCTGCTGTGGAAGATTATATTGCTGCAATGAAGAAAATGTGCTGTCTAGTGTTGGAATTAATGGCTGATGGGTTGGGGATTGAGCCAAGGAATGTGTTAAGCAAGTTATTGAAAGATGAGAAAAGTGATTCTTGTTTCAGAATTAACCATTACCCACCGTGCCCTGAGGTGCAACAAGCAGCATTGAATGGAAGGAATTTGCTTGGGTTTGGGGAGCATACAGACCCACAAGTCATTTCTGTCTTGAGATCTAATAGCACATCAGGACTCCAAATCTGTCTCACTGATGGAACTTGGGTTTCAGTTCCACCTGATCACACTTCTTTTTTCATCAATGTTGGTGATACTCTTCAGGTTCGTAGTTTTCGATATCGATTAGATATGTTATATGTTGGTGATACTCTTCAGGTATTGACTAATGGTAGGTTTAAAAGTGTAAAGCATAGGGTTTTGGCTGACACAACAAAGTCAAGGTTGTCGATGATATACTTTGGAGGACCACCCTTGAGTGAAAAGATAGTACCTTTACCATCTTTAATGTTAAAAAAAGAAGAAAGTTTGTACAAAGAGTTCACGTGGTTGGAGTACAAGAAAGCAATGTACAATTCAAGGCTGGCTGATTATAGACTTGGGCCTTTTGAAAAATCTTATGGCAAATGA
Protein sequence

>Msa0164380

MVVLSKPTLNNFLLVKSCKPSTTLLNGIPVVDLADPEAKTLIVKACKEFGFFKVVNHGVPLEFMSNLENEALRFFKKPQSEKDRAGPPDPFGYGSKRIGSNGDVGWVEYILLNTNPDVISNKSLSFYRENRQNLRSAVEDYIAAMKKMCCLVLELMADGLGIEPRNVLSKLLKDEKSDSCFRINHYPPCPEVQQAALNGRNLLGFGEHTDPQVISVLRSNSTSGLQICLTDGTWVSVPPDHTSFFINVGDTLQVRSFRYRLDMLYVGDTLQVLTNGRFKSVKHRVLADTTKSRLSMIYFGGPPLSEKIVPLPSLMLKKEESLYKEFTWLEYKKAMYNSRLADYRLGPFEKSYGK*