AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0194800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194800 MtrunA17_Chr2g0285931 93.785 354 4 1 1 354 1 336 0.0 676
Msa0194800 MtrunA17_Chr4g0052251 66.193 352 97 4 1 350 1 332 4.33e-171 479
Msa0194800 MtrunA17_Chr2g0313111 58.571 350 119 4 1 350 1 324 5.79e-151 428
Msa0194800 MtrunA17_Chr8g0358941 54.131 351 141 3 1 350 1 332 2.05e-131 379
Msa0194800 MtrunA17_Chr1g0194321 47.432 331 148 3 27 349 19 331 9.63e-105 311
Msa0194800 MtrunA17_Chr4g0068891 43.519 324 155 5 28 348 20 318 7.16e-90 272
Msa0194800 MtrunA17_Chr2g0293931 42.593 216 102 4 136 349 8 203 4.67e-53 174
Msa0194800 MtrunA17_Chr2g0332191 30.925 346 198 8 9 345 37 350 1.27e-45 159
Msa0194800 MtrunA17_Chr5g0423191 29.787 329 191 9 21 340 40 337 3.21e-43 153
Msa0194800 MtrunA17_Chr5g0423251 29.787 329 191 10 21 340 40 337 7.84e-42 149
Msa0194800 MtrunA17_Chr5g0420941 28.657 335 187 10 21 340 38 335 1.13e-40 146
Msa0194800 MtrunA17_Chr8g0345831 29.607 331 187 8 23 341 37 333 4.04e-40 144
Msa0194800 MtrunA17_Chr4g0045411 30.861 337 183 9 19 334 21 328 8.88e-40 144
Msa0194800 MtrunA17_Chr5g0421041 30.395 329 187 11 21 340 40 335 1.07e-39 143
Msa0194800 MtrunA17_Chr5g0420951 28.788 330 194 10 21 340 46 344 6.92e-39 141
Msa0194800 MtrunA17_Chr8g0365241 29.042 334 196 11 17 340 46 348 3.57e-38 139
Msa0194800 MtrunA17_Chr8g0375601 29.275 345 187 11 15 340 35 341 1.01e-37 139
Msa0194800 MtrunA17_Chr5g0420981 27.879 330 197 10 21 340 46 344 1.48e-37 138
Msa0194800 MtrunA17_Chr7g0242551 29.560 318 183 10 28 332 54 343 2.14e-37 137
Msa0194800 MtrunA17_Chr2g0296371 31.310 313 175 10 45 350 76 355 2.61e-37 137
Msa0194800 MtrunA17_Chr1g0162351 29.310 348 189 11 10 328 49 368 1.33e-35 133
Msa0194800 MtrunA17_Chr4g0045431 29.565 345 186 12 12 328 8 323 3.48e-35 131
Msa0194800 MtrunA17_Chr5g0437181 27.941 340 194 12 6 332 36 337 6.67e-35 130
Msa0194800 MtrunA17_Chr8g0375571 26.048 334 201 10 21 340 38 339 8.85e-35 130
Msa0194800 MtrunA17_Chr3g0113641 28.616 318 185 11 28 332 50 338 9.06e-35 130
Msa0194800 MtrunA17_Chr5g0421011 28.267 329 196 11 21 340 40 337 1.00e-34 130
Msa0194800 MtrunA17_Chr3g0128001 27.976 336 196 11 16 340 26 326 1.03e-34 130
Msa0194800 MtrunA17_Chr5g0412671 28.371 356 190 10 10 339 17 333 1.10e-34 130
Msa0194800 MtrunA17_Chr4g0045471 28.358 335 188 10 19 328 17 324 1.70e-34 129
Msa0194800 MtrunA17_Chr4g0045451 29.275 345 187 12 12 328 8 323 2.34e-34 129
Msa0194800 MtrunA17_Chr1g0162321 28.448 348 192 11 10 328 49 368 7.56e-34 129
Msa0194800 MtrunA17_Chr5g0412681 28.261 322 193 7 22 336 27 317 1.01e-33 127
Msa0194800 MtrunA17_Chr5g0420901 26.748 329 201 9 21 340 39 336 1.85e-33 127
Msa0194800 MtrunA17_Chr3g0130391 29.345 351 187 12 20 341 52 370 2.33e-33 127
Msa0194800 MtrunA17_Chr4g0045441 27.078 373 205 14 12 346 8 351 2.71e-33 126
Msa0194800 MtrunA17_Chr2g0314381 29.012 324 188 11 28 340 77 369 4.20e-33 126
Msa0194800 MtrunA17_Chr5g0423211 26.364 330 203 10 21 340 40 339 5.00e-33 125
Msa0194800 MtrunA17_Chr8g0384461 28.701 331 190 12 28 342 47 347 5.73e-33 125
Msa0194800 MtrunA17_Chr5g0412651 28.205 351 195 11 11 339 18 333 6.15e-33 125
Msa0194800 MtrunA17_Chr4g0006371 28.302 318 187 9 28 332 62 351 6.39e-33 125
Msa0194800 MtrunA17_Chr6g0474391 26.727 333 195 12 28 340 64 367 6.43e-33 126
Msa0194800 MtrunA17_Chr5g0423201 26.667 330 201 10 21 340 40 338 6.98e-33 125
Msa0194800 MtrunA17_Chr3g0125201 29.283 321 175 12 27 331 2 286 1.35e-32 123
Msa0194800 MtrunA17_Chr6g0455481 29.022 317 188 9 28 337 42 328 1.37e-32 124
Msa0194800 MtrunA17_Chr8g0375671 27.628 333 197 10 21 340 45 346 1.42e-32 125
Msa0194800 MtrunA17_Chr1g0162191 28.889 315 168 12 28 324 47 323 2.05e-32 124
Msa0194800 MtrunA17_Chr5g0421091 28.000 300 182 8 45 340 67 336 3.16e-32 123
Msa0194800 MtrunA17_Chr7g0239821 27.667 300 182 10 45 340 86 354 3.20e-32 124
Msa0194800 MtrunA17_Chr1g0204181 28.875 329 189 12 24 340 67 362 3.63e-32 124
Msa0194800 MtrunA17_Chr8g0351101 29.305 331 184 13 28 338 54 354 3.70e-32 124
Msa0194800 MtrunA17_Chr5g0423221 28.402 338 200 12 14 342 59 363 4.84e-32 123
Msa0194800 MtrunA17_Chr5g0424211 27.358 318 188 9 12 315 22 310 7.82e-32 122
Msa0194800 MtrunA17_Chr3g0114861 29.794 339 193 12 12 337 21 327 1.20e-31 121
Msa0194800 MtrunA17_Chr7g0220011 30.032 313 177 12 28 331 39 318 1.27e-31 121
Msa0194800 MtrunA17_Chr4g0066121 28.571 336 184 13 28 346 60 356 1.81e-31 122
Msa0194800 MtrunA17_Chr7g0239111 26.814 317 192 10 24 331 51 336 2.99e-31 121
Msa0194800 MtrunA17_Chr1g0148771 28.322 286 172 6 28 310 63 318 3.00e-31 121
Msa0194800 MtrunA17_Chr5g0424201 26.506 332 203 10 12 331 24 326 4.03e-31 120
Msa0194800 MtrunA17_Chr8g0375701 27.576 330 194 10 22 340 49 344 4.47e-31 120
Msa0194800 MtrunA17_Chr3g0087031 29.155 343 189 13 12 340 48 350 6.95e-31 120
Msa0194800 MtrunA17_Chr3g0093751 27.083 336 184 10 15 331 41 334 9.43e-31 119
Msa0194800 MtrunA17_Chr5g0420721 28.731 268 156 9 77 340 3 239 1.29e-30 117
Msa0194800 MtrunA17_Chr1g0184161 26.426 333 190 11 26 342 36 329 1.31e-30 119
Msa0194800 MtrunA17_Chr1g0162361 28.613 346 177 12 6 327 15 314 1.62e-30 119
Msa0194800 MtrunA17_Chr1g0191201 28.387 310 185 8 41 342 75 355 2.20e-30 119
Msa0194800 MtrunA17_Chr7g0239101 27.445 317 190 10 24 331 51 336 2.71e-30 118
Msa0194800 MtrunA17_Chr5g0405411 27.301 326 191 11 26 337 37 330 2.77e-30 118
Msa0194800 MtrunA17_Chr8g0371921 28.866 291 173 7 25 311 44 304 3.61e-30 118
Msa0194800 MtrunA17_Chr3g0126741 26.888 331 193 10 28 344 59 354 4.47e-30 118
Msa0194800 MtrunA17_Chr5g0421101 25.672 335 197 11 21 340 40 337 6.85e-30 117
Msa0194800 MtrunA17_Chr2g0311631 27.974 311 169 9 42 336 75 346 7.83e-30 117
Msa0194800 MtrunA17_Chr8g0371931 29.210 291 172 8 25 311 44 304 8.46e-30 117
Msa0194800 MtrunA17_Chr1g0184121 28.435 313 183 9 28 330 37 318 1.75e-29 116
Msa0194800 MtrunA17_Chr3g0093761 26.727 333 184 11 17 331 43 333 1.88e-29 116
Msa0194800 MtrunA17_Chr7g0220001 28.182 330 183 13 16 330 29 319 1.96e-29 115
Msa0194800 MtrunA17_Chr8g0370711 25.974 308 187 9 28 324 52 329 6.30e-29 114
Msa0194800 MtrunA17_Chr3g0121141 26.852 324 177 12 25 331 1 281 9.44e-29 113
Msa0194800 MtrunA17_Chr2g0319491 26.480 321 175 11 28 333 33 307 1.13e-28 113
Msa0194800 MtrunA17_Chr8g0370721 27.090 299 177 10 28 315 52 320 1.25e-28 114
Msa0194800 MtrunA17_Chr2g0314401 25.333 300 189 9 45 340 75 343 1.35e-28 114
Msa0194800 MtrunA17_Chr3g0125421 28.571 329 188 10 29 338 37 337 1.78e-28 113
Msa0194800 MtrunA17_Chr1g0184151 24.566 346 204 10 11 337 18 325 1.80e-28 113
Msa0194800 MtrunA17_Chr2g0311921 28.333 360 200 16 3 342 27 348 2.30e-28 113
Msa0194800 MtrunA17_Chr3g0092531 28.349 321 178 11 28 333 6 289 2.52e-28 112
Msa0194800 MtrunA17_Chr3g0093741 25.893 336 188 10 15 331 41 334 4.38e-28 112
Msa0194800 MtrunA17_Chr3g0145181 25.581 301 188 9 29 324 60 329 7.14e-28 112
Msa0194800 MtrunA17_Chr1g0184101 26.488 336 202 8 26 349 36 338 1.03e-27 111
Msa0194800 MtrunA17_Chr1g0187811 27.326 344 186 12 28 345 188 493 1.13e-27 113
Msa0194800 MtrunA17_Chr3g0102041 28.188 298 172 9 26 311 37 304 1.37e-27 111
Msa0194800 MtrunA17_Chr3g0109041 26.748 329 188 13 28 336 42 337 1.45e-27 110
Msa0194800 MtrunA17_Chr1g0184111 27.707 314 186 9 28 331 37 319 1.68e-27 110
Msa0194800 MtrunA17_Chr5g0426891 25.212 353 205 13 10 341 18 332 2.92e-27 110
Msa0194800 MtrunA17_Chr7g0239121 26.959 319 190 11 24 331 47 333 2.97e-27 110
Msa0194800 MtrunA17_Chr8g0336861 29.167 336 182 14 26 342 58 356 2.99e-27 110
Msa0194800 MtrunA17_Chr1g0187821 27.557 352 175 12 27 345 66 370 3.20e-27 110
Msa0194800 MtrunA17_Chr5g0398291 26.250 320 191 10 28 331 47 337 3.25e-27 110
Msa0194800 MtrunA17_Chr8g0384481 28.267 329 193 11 28 342 59 358 3.78e-27 110
Msa0194800 MtrunA17_Chr5g0439011 26.708 322 177 9 25 333 13 288 5.94e-27 108
Msa0194800 MtrunA17_Chr8g0348081 28.308 325 172 13 28 331 60 344 6.22e-27 109
Msa0194800 MtrunA17_Chr6g0472861 27.859 341 191 13 17 340 60 362 6.77e-27 109
Msa0194800 MtrunA17_Chr1g0167951 27.244 312 178 12 28 325 53 329 1.74e-26 108
Msa0194800 MtrunA17_Chr2g0314391 26.000 300 187 9 45 340 94 362 1.96e-26 108
Msa0194800 MtrunA17_Chr4g0064781 28.302 318 183 11 18 324 40 323 2.74e-26 107
Msa0194800 MtrunA17_Chr2g0289341 26.646 319 190 11 25 333 1 285 2.77e-26 106
Msa0194800 MtrunA17_Chr3g0145201 25.914 301 187 10 29 324 695 964 3.00e-26 110
Msa0194800 MtrunA17_Chr4g0055591 27.485 342 192 13 7 330 37 340 3.23e-26 107
Msa0194800 MtrunA17_Chr8g0375681 27.609 297 168 9 54 340 15 274 4.23e-26 105
Msa0194800 MtrunA17_Chr4g0045461 29.480 346 190 12 19 338 15 332 9.45e-26 106
Msa0194800 MtrunA17_Chr8g0336851 27.500 320 181 11 28 331 60 344 2.08e-25 105
Msa0194800 MtrunA17_Chr2g0311831 27.273 330 182 13 21 331 61 351 2.65e-25 105
Msa0194800 MtrunA17_Chr8g0336751 27.356 329 169 12 28 331 94 377 2.82e-25 105
Msa0194800 MtrunA17_Chr1g0187831 26.829 369 209 14 7 354 50 378 3.10e-25 105
Msa0194800 MtrunA17_Chr8g0336781 27.576 330 183 13 21 331 88 380 3.21e-25 105
Msa0194800 MtrunA17_Chr1g0167911 26.562 320 182 11 28 331 54 336 4.44e-25 104
Msa0194800 MtrunA17_Chr2g0293941 47.525 101 51 1 28 126 19 119 4.81e-25 99.8
Msa0194800 MtrunA17_Chr1g0179801 25.625 320 193 10 28 331 66 356 6.67e-25 103
Msa0194800 MtrunA17_Chr8g0336761 26.284 331 192 10 28 342 60 354 1.39e-24 102
Msa0194800 MtrunA17_Chr2g0311861 27.844 334 176 14 21 342 57 337 1.59e-24 102
Msa0194800 MtrunA17_Chr3g0114871 28.906 256 157 10 12 254 22 265 1.69e-24 100
Msa0194800 MtrunA17_Chr7g0250511 25.373 335 203 10 12 331 29 331 2.60e-24 102
Msa0194800 MtrunA17_Chr7g0232161 29.020 255 140 11 45 293 82 301 2.85e-24 101
Msa0194800 MtrunA17_Chr4g0050031 25.000 328 197 10 28 340 62 355 4.09e-24 101
Msa0194800 MtrunA17_Chr1g0167961 26.518 313 180 11 28 325 69 346 4.86e-24 101
Msa0194800 MtrunA17_Chr3g0145171 26.059 307 185 11 20 315 45 320 8.22e-24 100
Msa0194800 MtrunA17_Chr2g0311761 26.975 367 171 17 21 345 61 372 2.37e-23 99.8
Msa0194800 MtrunA17_Chr8g0336631 25.617 324 183 10 28 331 60 345 3.71e-23 99.0
Msa0194800 MtrunA17_Chr7g0239091 25.914 301 176 11 45 340 182 440 5.15e-23 99.8
Msa0194800 MtrunA17_Chr7g0225881 26.586 331 190 12 28 342 67 360 1.24e-22 97.4
Msa0194800 MtrunA17_Chr2g0311701 23.691 363 185 11 28 352 69 377 1.96e-22 97.1
Msa0194800 MtrunA17_Chr7g0266651 26.765 340 192 13 15 337 49 348 2.48e-22 96.7
Msa0194800 MtrunA17_Chr4g0011311 27.863 262 153 10 28 273 67 308 4.68e-22 95.1
Msa0194800 MtrunA17_Chr7g0247741 26.866 335 194 13 28 350 11 306 5.27e-22 95.1
Msa0194800 MtrunA17_Chr7g0265221 24.919 309 180 10 28 315 67 344 9.02e-22 95.1
Msa0194800 MtrunA17_Chr1g0184241 25.697 323 191 11 21 331 62 347 1.47e-21 94.4
Msa0194800 MtrunA17_Chr3g0105281 25.697 323 174 13 28 335 34 305 3.00e-21 92.8
Msa0194800 MtrunA17_Chr8g0364471 25.680 331 187 13 21 331 62 353 3.67e-21 93.6
Msa0194800 MtrunA17_Chr3g0082731 39.535 129 64 4 28 153 20 137 3.71e-21 88.2
Msa0194800 MtrunA17_Chr2g0314371 25.385 260 152 11 28 256 52 300 4.33e-21 92.8
Msa0194800 MtrunA17_Chr7g0239071 25.256 293 177 10 46 331 24 281 4.93e-21 92.0
Msa0194800 MtrunA17_Chr7g0235951 23.220 323 193 11 28 331 67 353 9.47e-21 92.4
Msa0194800 MtrunA17_Chr2g0311711 25.846 325 180 13 28 331 67 351 9.84e-21 92.0
Msa0194800 MtrunA17_Chr8g0354261 26.168 321 176 12 45 345 95 374 1.10e-20 92.0
Msa0194800 MtrunA17_Chr2g0311741 24.340 341 200 9 27 349 26 326 7.44e-20 89.0
Msa0194800 MtrunA17_Chr8g0348951 23.684 342 197 12 28 350 10 306 7.84e-20 89.0
Msa0194800 MtrunA17_Chr7g0265351 23.932 351 195 13 10 331 10 317 9.49e-20 89.0
Msa0194800 MtrunA17_Chr7g0247991 25.146 342 200 13 28 349 67 372 3.98e-19 87.4
Msa0194800 MtrunA17_Chr8g0354241 28.188 298 159 12 42 325 92 348 1.83e-18 85.9
Msa0194800 MtrunA17_Chr1g0161041 25.212 353 186 12 20 340 78 384 2.63e-18 85.5
Msa0194800 MtrunA17_Chr5g0394071 27.451 204 105 9 136 335 3 167 4.53e-18 81.3
Msa0194800 MtrunA17_Chr5g0420881 28.931 159 86 4 183 340 1 133 4.53e-18 80.1
Msa0194800 MtrunA17_Chr4g0053251 23.780 328 167 11 25 311 5 290 8.46e-18 83.2
Msa0194800 MtrunA17_Chr4g0075471 31.325 166 85 5 171 333 17 156 9.11e-18 79.7
Msa0194800 MtrunA17_Chr6g0486831 26.724 348 198 9 23 345 19 334 1.59e-17 82.4
Msa0194800 MtrunA17_Chr7g0233661 30.189 159 78 5 178 335 15 141 1.77e-17 79.0
Msa0194800 MtrunA17_Chr1g0158011 27.670 206 122 4 130 334 65 244 1.83e-17 81.3
Msa0194800 MtrunA17_Chr7g0235981 32.934 167 81 5 134 299 133 269 1.83e-17 82.4
Msa0194800 MtrunA17_Chr1g0161081 25.000 340 193 13 28 348 73 369 1.93e-17 82.8
Msa0194800 MtrunA17_Chr8g0335411 25.073 343 199 14 28 349 67 372 6.39e-17 81.3
Msa0194800 MtrunA17_Chr6g0488511 23.000 300 186 10 27 315 2 267 9.60e-17 79.7
Msa0194800 MtrunA17_Chr4g0066991 24.779 339 185 14 28 349 67 352 1.17e-16 80.1
Msa0194800 MtrunA17_Chr3g0126761 29.630 162 87 4 183 344 91 225 1.30e-16 78.2
Msa0194800 MtrunA17_Chr1g0161111 24.233 326 197 13 28 340 132 420 3.72e-16 79.3
Msa0194800 MtrunA17_Chr7g0236011 24.854 342 201 12 28 349 67 372 1.13e-15 77.4
Msa0194800 MtrunA17_Chr8g0364171 28.859 149 93 4 118 265 1 137 1.23e-14 70.5
Msa0194800 MtrunA17_Chr4g0055911 26.174 298 165 14 27 303 8 271 4.18e-14 72.4
Msa0194800 MtrunA17_Chr2g0319521 28.467 137 87 3 127 263 8 133 1.31e-13 67.4
Msa0194800 MtrunA17_Chr3g0092581 27.368 190 108 6 145 333 1 161 1.65e-13 68.6
Msa0194800 MtrunA17_Chr4g0055871 25.168 298 161 14 28 303 9 266 2.16e-13 70.1
Msa0194800 MtrunA17_Chr3g0138351 23.950 238 146 8 116 348 107 314 3.48e-13 69.7
Msa0194800 MtrunA17_Chr8g0389941 25.170 294 170 12 31 302 37 302 2.58e-12 67.4
Msa0194800 MtrunA17_Chr4g0004061 20.128 313 199 9 38 339 29 301 2.94e-12 66.6
Msa0194800 MtrunA17_Chr8g0336801 29.139 151 78 4 184 331 12 136 3.19e-12 63.9
Msa0194800 MtrunA17_Chr1g0170631 26.768 198 115 6 135 331 3 171 3.87e-12 64.7
Msa0194800 MtrunA17_Chr4g0004071 21.824 307 199 10 38 339 29 299 6.12e-12 65.9
Msa0194800 MtrunA17_Chr1g0158021 24.545 220 129 8 38 246 68 261 6.61e-12 65.1
Msa0194800 MtrunA17_Chr4g0064771 27.143 210 115 8 129 332 22 199 8.68e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194800 AT1G30040.1 59.322 354 119 5 1 351 1 332 1.96e-149 425
Msa0194800 AT2G34555.1 53.125 352 137 4 1 350 1 326 7.28e-130 375
Msa0194800 AT1G78440.1 53.143 350 135 4 1 350 1 321 1.40e-128 372
Msa0194800 AT1G30040.2 60.700 257 94 4 1 254 1 253 1.60e-109 321
Msa0194800 AT1G02400.1 44.615 325 154 4 29 349 25 327 1.90e-92 280
Msa0194800 AT1G47990.1 42.733 344 160 9 14 348 1 316 2.40e-83 256
Msa0194800 AT1G02400.2 45.852 229 117 2 29 254 25 249 1.39e-68 216
Msa0194800 AT1G15550.1 30.523 344 200 9 10 344 40 353 2.48e-44 156
Msa0194800 AT5G08640.2 30.931 333 189 9 11 331 22 325 3.02e-44 155
Msa0194800 AT5G08640.1 30.931 333 189 9 11 331 22 325 3.02e-44 155
Msa0194800 AT2G38240.1 30.573 314 180 10 28 332 48 332 1.75e-41 149
Msa0194800 AT1G80330.1 28.931 318 189 8 28 336 49 338 1.66e-39 143
Msa0194800 AT1G80340.1 29.448 326 192 8 28 344 50 346 5.54e-38 139
Msa0194800 AT3G55970.1 29.052 327 189 10 20 333 47 343 8.53e-38 139
Msa0194800 AT1G78550.1 28.614 332 191 11 22 340 47 345 3.93e-37 137
Msa0194800 AT4G25420.1 28.453 362 206 13 1 340 33 363 7.29e-37 137
Msa0194800 AT5G07200.1 29.345 351 185 14 19 340 48 364 2.77e-36 135
Msa0194800 AT4G10500.1 27.964 329 190 11 26 341 42 336 3.90e-36 134
Msa0194800 AT5G63590.1 28.981 314 185 10 28 332 14 298 1.26e-35 132
Msa0194800 AT5G51810.1 29.683 347 195 15 10 338 44 359 2.70e-35 132
Msa0194800 AT1G17020.1 27.692 325 193 10 28 340 53 347 8.65e-35 131
Msa0194800 AT5G24530.1 28.875 329 187 11 25 340 35 329 1.90e-34 129
Msa0194800 AT3G11180.2 27.327 333 196 10 17 332 76 379 2.85e-34 130
Msa0194800 AT3G11180.1 27.327 333 196 10 17 332 76 379 4.43e-34 130
Msa0194800 AT3G13610.1 27.378 347 173 11 27 343 61 358 6.87e-34 129
Msa0194800 AT5G05600.1 26.901 342 200 12 10 332 40 350 1.15e-33 128
Msa0194800 AT4G25300.1 28.267 329 193 11 24 340 48 345 2.75e-33 127
Msa0194800 AT4G16330.2 27.900 319 186 13 28 337 67 350 3.56e-33 127
Msa0194800 AT5G63600.2 28.522 291 174 8 28 314 33 293 6.14e-33 125
Msa0194800 AT4G25310.1 29.236 301 174 11 45 340 76 342 7.72e-33 125
Msa0194800 AT3G12900.1 27.673 318 176 10 28 331 59 336 1.05e-32 125
Msa0194800 AT5G63600.1 28.522 291 173 9 28 314 33 292 1.14e-32 124
Msa0194800 AT1G60980.1 29.167 336 183 14 28 340 57 360 1.23e-32 125
Msa0194800 AT1G44090.1 30.233 344 183 14 12 333 48 356 1.40e-32 125
Msa0194800 AT3G19010.1 29.193 322 178 11 28 328 28 320 2.04e-32 124
Msa0194800 AT3G19010.4 29.193 322 178 11 28 328 28 320 2.04e-32 124
Msa0194800 AT2G36690.2 29.483 329 186 10 16 331 51 346 3.61e-32 124
Msa0194800 AT2G36690.1 29.483 329 186 10 16 331 51 346 3.61e-32 124
Msa0194800 AT4G21690.1 26.822 343 203 13 19 344 37 348 6.50e-32 123
Msa0194800 AT1G17010.1 27.273 330 195 12 24 340 50 347 7.56e-32 123
Msa0194800 AT3G19000.1 28.818 347 188 12 12 328 8 325 1.31e-31 122
Msa0194800 AT1G78550.2 27.458 295 177 9 51 340 5 267 5.75e-31 119
Msa0194800 AT1G55290.1 27.052 329 176 10 28 336 62 346 1.48e-30 119
Msa0194800 AT4G10490.1 26.140 329 191 11 26 338 40 332 2.35e-30 119
Msa0194800 AT4G25420.2 30.216 278 162 11 1 259 33 297 4.07e-30 117
Msa0194800 AT3G55970.2 31.048 248 146 9 20 254 47 282 4.94e-30 117
Msa0194800 AT3G21420.1 30.061 326 163 13 14 315 41 325 7.58e-30 117
Msa0194800 AT3G51240.1 27.835 291 176 7 25 311 43 303 1.58e-29 117
Msa0194800 AT2G44800.1 29.206 315 180 11 28 331 52 334 2.58e-29 116
Msa0194800 AT1G62380.1 28.527 319 173 11 29 333 8 285 3.38e-29 115
Msa0194800 AT1G05010.1 30.000 300 168 13 25 315 1 267 3.67e-28 112
Msa0194800 AT1G77330.1 26.426 333 186 13 27 340 2 294 5.54e-28 111
Msa0194800 AT1G12010.1 28.173 323 171 11 28 333 7 285 5.56e-28 112
Msa0194800 AT2G30830.1 28.614 339 181 14 15 333 43 340 9.07e-28 112
Msa0194800 AT4G21200.1 24.684 316 180 12 30 335 50 317 1.06e-27 111
Msa0194800 AT5G51810.2 30.116 259 155 11 10 254 44 290 5.17e-27 108
Msa0194800 AT3G60290.1 28.349 321 186 13 22 331 47 334 5.45e-27 109
Msa0194800 AT4G22880.1 26.316 304 179 10 28 315 47 321 1.02e-26 108
Msa0194800 AT4G22880.2 26.316 304 179 10 28 315 47 321 1.02e-26 108
Msa0194800 AT4G22880.3 26.316 304 179 10 28 315 47 321 1.02e-26 108
Msa0194800 AT3G19000.2 29.749 279 156 11 12 261 8 275 1.39e-26 107
Msa0194800 AT5G63580.1 28.175 252 162 7 16 260 7 246 1.96e-25 103
Msa0194800 AT1G50960.1 27.439 328 181 13 21 333 31 316 2.00e-25 105
Msa0194800 AT5G63580.2 29.268 246 155 7 16 254 7 240 2.93e-25 102
Msa0194800 AT5G59530.1 26.724 348 184 12 28 345 58 364 3.05e-25 105
Msa0194800 AT5G05600.2 27.652 264 159 11 10 254 40 290 4.39e-25 103
Msa0194800 AT5G63595.1 27.181 298 155 10 19 303 9 257 5.88e-25 102
Msa0194800 AT5G59540.1 25.862 348 189 12 19 340 51 355 1.17e-24 103
Msa0194800 AT3G19010.2 31.048 248 139 10 28 254 28 264 1.51e-24 102
Msa0194800 AT1G04380.1 26.857 350 191 13 19 345 38 345 6.06e-24 101
Msa0194800 AT3G19010.3 27.070 314 165 11 28 328 28 290 1.53e-23 99.8
Msa0194800 AT2G19590.1 25.083 303 171 10 28 315 11 272 2.06e-23 99.0
Msa0194800 AT5G43450.1 24.324 333 186 10 28 338 61 349 2.87e-23 99.8
Msa0194800 AT4G16330.1 26.506 249 145 10 92 337 31 244 2.34e-21 92.4
Msa0194800 AT4G25310.2 26.333 300 156 10 45 340 76 314 2.45e-21 93.6
Msa0194800 AT4G25300.2 29.327 208 118 6 134 340 72 251 3.16e-21 92.0
Msa0194800 AT1G06620.1 25.656 343 198 14 15 339 49 352 3.63e-21 93.6
Msa0194800 AT5G43440.1 25.309 324 182 13 28 331 62 345 7.15e-21 92.8
Msa0194800 AT2G25450.1 25.649 308 170 12 10 299 38 304 1.11e-20 92.4
Msa0194800 AT1G49390.1 25.000 312 192 10 28 327 45 326 1.36e-20 92.0
Msa0194800 AT4G23340.1 26.032 315 193 10 28 333 10 293 1.56e-20 91.3
Msa0194800 AT5G20400.1 24.675 308 192 8 28 324 45 323 2.76e-20 90.9
Msa0194800 AT3G61400.1 24.713 348 205 13 14 339 46 358 8.33e-20 89.7
Msa0194800 AT1G06640.1 27.333 300 158 12 20 299 55 314 1.01e-19 89.7
Msa0194800 AT1G49390.2 25.271 277 173 9 55 327 1 247 2.73e-19 87.0
Msa0194800 AT2G30840.1 25.606 371 205 16 3 345 35 362 2.91e-19 88.2
Msa0194800 AT1G06645.1 26.543 324 183 13 25 331 74 359 4.14e-19 87.8
Msa0194800 AT5G54000.2 26.408 284 175 9 45 324 71 324 8.88e-19 86.7
Msa0194800 AT5G07480.1 24.629 337 206 12 12 331 28 333 1.11e-18 86.7
Msa0194800 AT3G49620.1 24.085 328 183 9 44 348 66 350 1.61e-18 85.9
Msa0194800 AT5G20550.1 24.648 284 181 9 45 324 70 324 1.63e-18 85.9
Msa0194800 AT5G59540.2 26.154 260 144 10 19 255 51 285 1.66e-18 85.1
Msa0194800 AT2G19590.2 24.042 287 168 9 38 315 12 257 1.75e-18 85.1
Msa0194800 AT1G03410.2 25.000 352 210 14 14 348 45 359 1.94e-18 85.9
Msa0194800 AT1G03410.1 25.000 352 210 14 14 348 82 396 2.47e-18 85.9
Msa0194800 AT1G04350.1 25.225 333 190 11 27 340 57 349 4.02e-18 84.7
Msa0194800 AT3G49630.1 24.299 321 177 9 44 341 41 318 6.37e-18 84.0
Msa0194800 AT3G49630.3 24.299 321 177 9 44 341 37 314 7.55e-18 83.6
Msa0194800 AT5G54000.1 26.277 274 168 9 55 324 1 244 2.44e-17 81.3
Msa0194800 AT5G43450.2 24.082 245 141 9 28 253 61 279 2.63e-17 81.6
Msa0194800 AT1G04380.2 27.059 255 148 10 19 259 38 268 5.16e-17 80.5
Msa0194800 AT3G61400.2 25.000 264 164 9 14 259 46 293 4.03e-16 78.2
Msa0194800 AT5G43440.2 25.101 247 146 11 28 257 62 286 1.06e-15 77.0
Msa0194800 AT3G50210.4 23.711 291 165 7 32 299 28 284 1.43e-15 77.0
Msa0194800 AT3G50210.1 23.711 291 165 7 32 299 28 284 1.43e-15 77.0
Msa0194800 AT3G50210.3 23.711 291 165 7 32 299 28 284 1.43e-15 77.0
Msa0194800 AT1G03400.1 23.926 326 198 14 28 342 56 342 3.00e-15 76.3
Msa0194800 AT1G06640.2 26.772 254 145 10 20 254 55 286 3.12e-15 75.9
Msa0194800 AT1G06650.1 26.908 249 149 10 20 253 55 285 1.43e-14 73.9
Msa0194800 AT5G12270.1 24.625 333 183 15 28 336 56 344 7.99e-14 72.4
Msa0194800 AT3G47190.1 23.103 290 175 9 28 302 32 288 1.06e-12 68.6
Msa0194800 AT1G52820.1 20.859 326 206 13 28 337 12 301 4.19e-12 66.6
Msa0194800 AT5G07480.2 25.000 216 129 7 121 331 37 224 5.64e-11 62.4

Find 100 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGAATTTATGTCCAATT+TGG 0.176730 2_1:-11204959 Msa0194800:CDS
GTGAAGGCTTGTAAGGAATT+TGG 0.190043 2_1:-11205012 Msa0194800:CDS
GAATGTTGGCACATGATATT+TGG 0.221993 2_1:-11202994 Msa0194800:three_prime_UTR
GAAGGAATTTGCTTGGGTTT+GGG 0.238321 2_1:-11203997 Msa0194800:CDS
GAATTAATGGCTGATGGGTT+GGG 0.283453 2_1:-11204133 Msa0194800:CDS
CTGTCTAGTGTTGGAATTAA+TGG 0.285143 2_1:-11204146 Msa0194800:CDS
GCTGGTCCTCCTGATCCTTT+TGG 0.285305 2_1:-11204886 Msa0194800:CDS
GGAAGGAATTTGCTTGGGTT+TGG 0.286862 2_1:-11203998 Msa0194800:CDS
CTATAAGAGTCTTTGCTTCC+GGG 0.305111 2_1:+11205034 None:intergenic
ATATGTTGGTGATACTCTTC+AGG 0.308745 2_1:-11203801 Msa0194800:intron
AAGTGTAAAGCATAGGGTTT+TGG 0.313870 2_1:-11203246 Msa0194800:CDS
GAGATGAAGGGTGCTTTAAA+TGG 0.318506 2_1:+11205237 None:intergenic
TCATTGCAATAACAATATAA+AGG 0.326503 2_1:+11202807 None:intergenic
CCATTCAACAAAGTTGTTGA+TGG 0.337243 2_1:+11205081 None:intergenic
CAATGTTGGTGATACTCTTC+AGG 0.338711 2_1:-11203855 Msa0194800:CDS
GTGAAAATCGACAAAATCTA+AGG 0.347346 2_1:-11204756 Msa0194800:intron
AATGCTGCTTGTTGCACCTC+AGG 0.352397 2_1:+11204025 None:intergenic
TTCCATCAGTGAGACAGATT+TGG 0.358775 2_1:+11203918 None:intergenic
TATGTTTATTCATTTATCTA+TGG 0.367689 2_1:-11202872 Msa0194800:three_prime_UTR
ACTATAAGAGTCTTTGCTTC+CGG 0.371721 2_1:+11205033 None:intergenic
AACTTGCTTAACACATTCCT+TGG 0.383795 2_1:+11204103 None:intergenic
TTTATATATAGAAAGTGAAT+AGG 0.406950 2_1:-11202909 Msa0194800:three_prime_UTR
GGAATTAATGGCTGATGGGT+TGG 0.408971 2_1:-11204134 Msa0194800:CDS
CCATCAACAACTTTGTTGAA+TGG 0.414722 2_1:-11205081 Msa0194800:CDS
AATTAATGGCTGATGGGTTG+GGG 0.422524 2_1:-11204132 Msa0194800:CDS
AGTAAGAGAATTGGTTCAAA+TGG 0.422764 2_1:-11204856 Msa0194800:CDS
GACTTGTTAGAGATAACGTC+AGG 0.423293 2_1:+11204793 None:intergenic
TCTTATAGTGAAGGCTTGTA+AGG 0.425136 2_1:-11205019 Msa0194800:CDS
TTCAAATGGTGATGTTGGTT+GGG 0.425962 2_1:-11204842 Msa0194800:CDS
ATGGTAATGCATGAAAGTTA+AGG 0.426614 2_1:+11205264 None:intergenic
GGTTATGGAAGTAAGAGAAT+TGG 0.429063 2_1:-11204865 Msa0194800:CDS
CGATTAGATATGTTATATGT+TGG 0.429113 2_1:-11203815 Msa0194800:CDS
AGAAAGCAATGTACAATTCA+AGG 0.429933 2_1:-11203088 Msa0194800:CDS
GGGTGCTTTAAATGGAGAAA+TGG 0.430321 2_1:+11205245 None:intergenic
TCTGTCTCACTGATGGAACT+TGG 0.437034 2_1:-11203913 Msa0194800:CDS
AGGCTGGCTGATTATAGACT+TGG 0.452611 2_1:-11203068 Msa0194800:CDS
GTTCAAATGGTGATGTTGGT+TGG 0.453207 2_1:-11204843 Msa0194800:CDS
AGTAAGAAATTATTTAATGT+TGG 0.456630 2_1:+11205120 None:intergenic
CCTCAGGGCACGGTGGGTAA+TGG 0.461056 2_1:+11204041 None:intergenic
CTCTTACTTCCATAACCAAA+AGG 0.467266 2_1:+11204871 None:intergenic
AAGGAATTTGCTTGGGTTTG+GGG 0.471960 2_1:-11203996 Msa0194800:CDS
TTTAACATTAAAGATGGTAA+AGG 0.476105 2_1:+11203155 None:intergenic
TGGTAATGCATGAAAGTTAA+GGG 0.476855 2_1:+11205265 None:intergenic
TTGAGATCTAATAGCACATC+AGG 0.476870 2_1:-11203944 Msa0194800:CDS
TCAAGACAGAAATGACTTGT+GGG 0.478331 2_1:+11203963 None:intergenic
TGAATGGAAGGAATTTGCTT+GGG 0.478641 2_1:-11204003 Msa0194800:CDS
CTTCCATAACCAAAAGGATC+AGG 0.481337 2_1:+11204877 None:intergenic
ATTGGTTCAAATGGTGATGT+TGG 0.487540 2_1:-11204847 Msa0194800:CDS
GTTTAAAAGTGTAAAGCATA+GGG 0.491250 2_1:-11203252 Msa0194800:CDS
ATTTGGAAAATGAAGCACTA+AGG 0.493754 2_1:-11204942 Msa0194800:CDS
TTGAATGGAAGGAATTTGCT+TGG 0.495411 2_1:-11204004 Msa0194800:CDS
TTGATGCAGGTATTGACTAA+TGG 0.496751 2_1:-11203278 Msa0194800:intron
AGATGAAAGCAATATAAGAA+AGG 0.499006 2_1:+11205196 None:intergenic
ATGCTGCTTGTTGCACCTCA+GGG 0.501968 2_1:+11204026 None:intergenic
GCTTGTTGCACCTCAGGGCA+CGG 0.503859 2_1:+11204031 None:intergenic
GCTCTGTCTTTCTCTGACTG+TGG 0.508511 2_1:+11204907 None:intergenic
TGTCGTCGACCTTGCAGACC+CGG 0.509378 2_1:-11205052 Msa0194800:CDS
GTGCAACAAGCAGCATTGAA+TGG 0.509603 2_1:-11204019 Msa0194800:CDS
GGTTTAAAAGTGTAAAGCAT+AGG 0.510882 2_1:-11203253 Msa0194800:CDS
CTGTCTCACTGATGGAACTT+GGG 0.516008 2_1:-11203912 Msa0194800:CDS
CTCCAAATCTGTCTCACTGA+TGG 0.526180 2_1:-11203920 Msa0194800:CDS
AATTATATAGATGACCCATC+TGG 0.527398 2_1:+11205300 None:intergenic
AAGCAATATAAGAAAGGAGG+AGG 0.531160 2_1:+11205202 None:intergenic
GTGTTGGAATTAATGGCTGA+TGG 0.531290 2_1:-11204139 Msa0194800:CDS
CGTCAGGGTTAGTATTAAGA+AGG 0.535935 2_1:+11204809 None:intergenic
AACAAGCAGCATTGAATGGA+AGG 0.537153 2_1:-11204015 Msa0194800:CDS
GGCTGGCTGATTATAGACTT+GGG 0.538279 2_1:-11203067 Msa0194800:CDS
ATTTGGATTCTTCAAAGTGG+TGG 0.541827 2_1:-11204995 Msa0194800:CDS
TCTTTGCTTCCGGGTCTGCA+AGG 0.550301 2_1:+11205043 None:intergenic
AGGTTGTCGATGATATACTT+TGG 0.551047 2_1:-11203206 Msa0194800:CDS
TTACAAAGAGTTCACGTGGT+TGG 0.552595 2_1:-11203117 Msa0194800:CDS
CTCAAGACAGAAATGACTTG+TGG 0.553027 2_1:+11203962 None:intergenic
TGAAAGCAATATAAGAAAGG+AGG 0.556587 2_1:+11205199 None:intergenic
GGTGGACCATGGTGTTCCAT+TGG 0.559016 2_1:-11204977 Msa0194800:CDS
GCTATTATGTAGGTCTGCTG+TGG 0.561033 2_1:-11204200 Msa0194800:intron
GGGTCTGCAAGGTCGACGAC+AGG 0.566966 2_1:+11205054 None:intergenic
GAAAATGTGCTGTCTAGTGT+TGG 0.570738 2_1:-11204155 Msa0194800:CDS
AAATTGGACATAAATTCCAA+TGG 0.573440 2_1:+11204961 None:intergenic
AGCAATGTACAATTCAAGGC+TGG 0.573618 2_1:-11203084 Msa0194800:CDS
TTGTCGATGATATACTTTGG+AGG 0.583079 2_1:-11203203 Msa0194800:CDS
GGTGACAATGAGAGCCAGAT+GGG 0.584164 2_1:-11205314 None:intergenic
AGCAAAGACTCTTATAGTGA+AGG 0.588277 2_1:-11205028 Msa0194800:CDS
AGGTGACAATGAGAGCCAGA+TGG 0.591385 2_1:-11205315 None:intergenic
GTTGCACCTCAGGGCACGGT+GGG 0.593851 2_1:+11204035 None:intergenic
TGTTGGAATTAATGGCTGAT+GGG 0.595328 2_1:-11204138 Msa0194800:CDS
TGGCTGACACAACAAAGTCA+AGG 0.599938 2_1:-11203226 Msa0194800:CDS
TGCAGGTATTGACTAATGGT+AGG 0.608292 2_1:-11203274 Msa0194800:intron
AATGCATGAAAGTTAAGGGA+GGG 0.613781 2_1:+11205269 None:intergenic
CAGTCAGAGAAAGACAGAGC+TGG 0.620304 2_1:-11204904 Msa0194800:CDS
GGAATTTGGATTCTTCAAAG+TGG 0.621903 2_1:-11204998 Msa0194800:CDS
ATGCATGAAAGTTAAGGGAG+GGG 0.628931 2_1:+11205270 None:intergenic
ATGGGTTGGGGATTGAGCCA+AGG 0.632929 2_1:-11204120 Msa0194800:CDS
TGTTGCACCTCAGGGCACGG+TGG 0.643786 2_1:+11204034 None:intergenic
TGGCTTAGACAAAACAACCA+TGG 0.648574 2_1:+11205140 None:intergenic
TTCTTCAAAGTGGTGGACCA+TGG 0.657180 2_1:-11204988 Msa0194800:CDS
CCATAACCAAAAGGATCAGG+AGG 0.661844 2_1:+11204880 None:intergenic
CCATTACCCACCGTGCCCTG+AGG 0.673400 2_1:-11204041 Msa0194800:CDS
TAATGCATGAAAGTTAAGGG+AGG 0.691955 2_1:+11205268 None:intergenic
ACTTGTTAGAGATAACGTCA+GGG 0.697299 2_1:+11204794 None:intergenic
TAAATTCCAATGGAACACCA+TGG 0.713883 2_1:+11204971 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAAGAAATTATTTAATGT+TGG + chr2_1:11202983-11203002 None:intergenic 15.0%
!! TTTATTCTTTATTAGTCATT+TGG + chr2_1:11203500-11203519 None:intergenic 15.0%
!! TTGTAAAATTGAAAATTGTA+CGG - chr2_1:11203541-11203560 Msa0194800:intron 15.0%
!! TTATACCAAATTGTAAAAAA+TGG + chr2_1:11203733-11203752 None:intergenic 15.0%
!! ATGAATAAAAAAAAGGTTAA+AGG + chr2_1:11204399-11204418 None:intergenic 15.0%
!!! TATTTTTCTCTTTTTAAATG+TGG - chr2_1:11204654-11204673 Msa0194800:intron 15.0%
!!! TTTCTTTTTTGATACTAAAA+AGG + chr2_1:11204702-11204721 None:intergenic 15.0%
!!! TCTTTTTTTAACATTAAAGA+TGG + chr2_1:11204954-11204973 None:intergenic 15.0%
!! TTTATATATAGAAAGTGAAT+AGG - chr2_1:11205191-11205210 Msa0194800:five_prime_UTR 15.0%
!! TATGTTTATTCATTTATCTA+TGG - chr2_1:11205228-11205247 Msa0194800:five_prime_UTR 15.0%
!!! TGGTTTAATTGTTTTAATCA+TGG - chr2_1:11203469-11203488 Msa0194800:intron 20.0%
!! AATTTGGTATAATGTATGTT+TGG - chr2_1:11203741-11203760 Msa0194800:intron 20.0%
!! ATGTGTAATTTATACATGTT+TGG + chr2_1:11203824-11203843 None:intergenic 20.0%
!!! GAGTCTTATGAATAAAAAAA+AGG + chr2_1:11204406-11204425 None:intergenic 20.0%
!! ATTTAATGATCGACATTAAT+TGG + chr2_1:11204544-11204563 None:intergenic 20.0%
!! AATTTAAATGGAATACATGT+GGG + chr2_1:11204729-11204748 None:intergenic 20.0%
!! AAATTTAAATGGAATACATG+TGG + chr2_1:11204730-11204749 None:intergenic 20.0%
!!! TTCCATTTAAATTTTTGAAG+TGG - chr2_1:11204736-11204755 Msa0194800:intron 20.0%
!!! TCCATTTAAATTTTTGAAGT+GGG - chr2_1:11204737-11204756 Msa0194800:intron 20.0%
!! TTTAACATTAAAGATGGTAA+AGG + chr2_1:11204948-11204967 None:intergenic 20.0%
!! TCATTGCAATAACAATATAA+AGG + chr2_1:11205296-11205315 None:intergenic 20.0%
! AGAAGAAAAATAGAGATGAA+GGG + chr2_1:11202878-11202897 None:intergenic 25.0%
! AGATGAAAGCAATATAAGAA+AGG + chr2_1:11202907-11202926 None:intergenic 25.0%
! AAATTGGACATAAATTCCAA+TGG + chr2_1:11203142-11203161 None:intergenic 25.0%
! ATTGGAATTTATGTCCAATT+TGG - chr2_1:11203141-11203160 Msa0194800:CDS 25.0%
!!! TTAGATTTTGTCGATTTTCA+CGG + chr2_1:11203345-11203364 None:intergenic 25.0%
! AACATTGAAAAGGAAAAACA+GGG + chr2_1:11203405-11203424 None:intergenic 25.0%
!!! CTTTTCAATGTTGATAAAAC+CGG - chr2_1:11203413-11203432 Msa0194800:intron 25.0%
!! TTCTAAACCAATTTTTATCG+TGG + chr2_1:11203691-11203710 None:intergenic 25.0%
!! GGTTTAGAATTAATTTCAAC+CGG - chr2_1:11203702-11203721 Msa0194800:intron 25.0%
!!! TTGGTCCATTTTTTACAATT+TGG - chr2_1:11203725-11203744 Msa0194800:intron 25.0%
! ACAAAAGTGAATCCATTATA+AGG - chr2_1:11203774-11203793 Msa0194800:intron 25.0%
! TAGAGATAACATCCTTATAA+TGG + chr2_1:11203789-11203808 None:intergenic 25.0%
! TAAACACATAACTAACATGA+GGG + chr2_1:11203849-11203868 None:intergenic 25.0%
! ATAAACACATAACTAACATG+AGG + chr2_1:11203850-11203869 None:intergenic 25.0%
!!! ACTTCTTTTTTCATCAATGT+TGG - chr2_1:11204231-11204250 Msa0194800:intron 25.0%
! CGATTAGATATGTTATATGT+TGG - chr2_1:11204285-11204304 Msa0194800:intron 25.0%
! AGAAAAATAATTGAGAGACT+TGG + chr2_1:11204643-11204662 None:intergenic 25.0%
!!! CCATTTAAATTTTTGAAGTG+GGG - chr2_1:11204738-11204757 Msa0194800:intron 25.0%
!!! CATTTAAATTTTTGAAGTGG+GGG - chr2_1:11204739-11204758 Msa0194800:intron 25.0%
!! GTTTAAAAGTGTAAAGCATA+GGG - chr2_1:11204848-11204867 Msa0194800:CDS 25.0%
!!! TTGCCATAAGATTTTTCAAA+AGG + chr2_1:11205059-11205078 None:intergenic 25.0%
!!! CAACATTCAGAATTTTTTTG+AGG + chr2_1:11205094-11205113 None:intergenic 25.0%
! CTCAAAAAAATTCTGAATGT+TGG - chr2_1:11205092-11205111 Msa0194800:CDS 25.0%
AATTATATAGATGACCCATC+TGG + chr2_1:11202803-11202822 None:intergenic 30.0%
! TGGTAATGCATGAAAGTTAA+GGG + chr2_1:11202838-11202857 None:intergenic 30.0%
! ATGGTAATGCATGAAAGTTA+AGG + chr2_1:11202839-11202858 None:intergenic 30.0%
GAGAAGAAAAATAGAGATGA+AGG + chr2_1:11202879-11202898 None:intergenic 30.0%
TGAAAGCAATATAAGAAAGG+AGG + chr2_1:11202904-11202923 None:intergenic 30.0%
!!! AACCATGGTTTTGTTTTTTG+GGG + chr2_1:11202948-11202967 None:intergenic 30.0%
!!! CAACCATGGTTTTGTTTTTT+GGG + chr2_1:11202949-11202968 None:intergenic 30.0%
!!! ACAACCATGGTTTTGTTTTT+TGG + chr2_1:11202950-11202969 None:intergenic 30.0%
! TAGTGCTTCATTTTCCAAAT+TGG + chr2_1:11203158-11203177 None:intergenic 30.0%
! ATTTGGAAAATGAAGCACTA+AGG - chr2_1:11203158-11203177 Msa0194800:CDS 30.0%
! AGTAAGAGAATTGGTTCAAA+TGG - chr2_1:11203244-11203263 Msa0194800:CDS 30.0%
GTGAAAATCGACAAAATCTA+AGG - chr2_1:11203344-11203363 Msa0194800:intron 30.0%
ACATTGAAAAGGAAAAACAG+GGG + chr2_1:11203404-11203423 None:intergenic 30.0%
CAACATTGAAAAGGAAAAAC+AGG + chr2_1:11203406-11203425 None:intergenic 30.0%
!! CGGTTTTATCAACATTGAAA+AGG + chr2_1:11203415-11203434 None:intergenic 30.0%
CCATAAACTGAAAATCTCAT+CGG + chr2_1:11203452-11203471 None:intergenic 30.0%
TCATGTTGTGAAAATTAGAC+CGG + chr2_1:11203646-11203665 None:intergenic 30.0%
! AGTTTTGCCACGATAAAAAT+TGG - chr2_1:11203681-11203700 Msa0194800:intron 30.0%
TAGAATTAATTTCAACCGGT+TGG - chr2_1:11203706-11203725 Msa0194800:intron 30.0%
ATTGTAAAAAATGGACCAAC+CGG + chr2_1:11203724-11203743 None:intergenic 30.0%
!!! GCTACTTTTTGCTATTATGT+AGG - chr2_1:11203890-11203909 Msa0194800:CDS 30.0%
! ATGAAAAAAGAAGTGTGATC+AGG + chr2_1:11204225-11204244 None:intergenic 30.0%
CCCCACTTCAAAAATTTAAA+TGG + chr2_1:11204741-11204760 None:intergenic 30.0%
GGTTATCAAACATTCTAACT+TGG - chr2_1:11204773-11204792 Msa0194800:CDS 30.0%
! GGTTTAAAAGTGTAAAGCAT+AGG - chr2_1:11204847-11204866 Msa0194800:CDS 30.0%
AGAAAGCAATGTACAATTCA+AGG - chr2_1:11205012-11205031 Msa0194800:CDS 30.0%
!! TGATATTTGGCCTTTCTTTT+TGG - chr2_1:11205119-11205138 Msa0194800:CDS 30.0%
!! GATATTTGGCCTTTCTTTTT+GGG - chr2_1:11205120-11205139 Msa0194800:CDS 30.0%
AAAAAAGTAGAGTCAACTGT+TGG + chr2_1:11205163-11205182 None:intergenic 30.0%
AATGCATGAAAGTTAAGGGA+GGG + chr2_1:11202834-11202853 None:intergenic 35.0%
TAATGCATGAAAGTTAAGGG+AGG + chr2_1:11202835-11202854 None:intergenic 35.0%
AAGCAATATAAGAAAGGAGG+AGG + chr2_1:11202901-11202920 None:intergenic 35.0%
TACCCCAAAAAACAAAACCA+TGG - chr2_1:11202943-11202962 Msa0194800:three_prime_UTR 35.0%
CCATTCAACAAAGTTGTTGA+TGG + chr2_1:11203022-11203041 None:intergenic 35.0%
CCATCAACAACTTTGTTGAA+TGG - chr2_1:11203019-11203038 Msa0194800:three_prime_UTR 35.0%
ACTATAAGAGTCTTTGCTTC+CGG + chr2_1:11203070-11203089 None:intergenic 35.0%
AGCAAAGACTCTTATAGTGA+AGG - chr2_1:11203072-11203091 Msa0194800:CDS 35.0%
TCTTATAGTGAAGGCTTGTA+AGG - chr2_1:11203081-11203100 Msa0194800:CDS 35.0%
GGAATTTGGATTCTTCAAAG+TGG - chr2_1:11203102-11203121 Msa0194800:CDS 35.0%
ATTTGGATTCTTCAAAGTGG+TGG - chr2_1:11203105-11203124 Msa0194800:CDS 35.0%
TAAATTCCAATGGAACACCA+TGG + chr2_1:11203132-11203151 None:intergenic 35.0%
CTCTTACTTCCATAACCAAA+AGG + chr2_1:11203232-11203251 None:intergenic 35.0%
GGTTATGGAAGTAAGAGAAT+TGG - chr2_1:11203235-11203254 Msa0194800:CDS 35.0%
! ATTGGTTCAAATGGTGATGT+TGG - chr2_1:11203253-11203272 Msa0194800:CDS 35.0%
! TTCAAATGGTGATGTTGGTT+GGG - chr2_1:11203258-11203277 Msa0194800:CDS 35.0%
! ACTTGTTAGAGATAACGTCA+GGG + chr2_1:11203309-11203328 None:intergenic 35.0%
!!! TTGTCGATTTTCACGGTAAA+AGG + chr2_1:11203338-11203357 None:intergenic 35.0%
! CCGATGAGATTTTCAGTTTA+TGG - chr2_1:11203449-11203468 Msa0194800:intron 35.0%
!!! TAATGGATTCACTTTTGTCG+TGG + chr2_1:11203772-11203791 None:intergenic 35.0%
! CTGTCTAGTGTTGGAATTAA+TGG - chr2_1:11203954-11203973 Msa0194800:CDS 35.0%
TGTTGGAATTAATGGCTGAT+GGG - chr2_1:11203962-11203981 Msa0194800:CDS 35.0%
! AACTTGCTTAACACATTCCT+TGG + chr2_1:11204000-11204019 None:intergenic 35.0%
! TTGAATGGAAGGAATTTGCT+TGG - chr2_1:11204096-11204115 Msa0194800:CDS 35.0%
! TGAATGGAAGGAATTTGCTT+GGG - chr2_1:11204097-11204116 Msa0194800:CDS 35.0%
! TCAAGACAGAAATGACTTGT+GGG + chr2_1:11204140-11204159 None:intergenic 35.0%
TTGAGATCTAATAGCACATC+AGG - chr2_1:11204156-11204175 Msa0194800:CDS 35.0%
! AAAAAAGAAGTGTGATCAGG+TGG + chr2_1:11204222-11204241 None:intergenic 35.0%
!! ATATGTTGGTGATACTCTTC+AGG - chr2_1:11204299-11204318 Msa0194800:intron 35.0%
CAGTCTTTGAATTGATCGAA+TGG + chr2_1:11204584-11204603 None:intergenic 35.0%
CATTCGATCAATTCAAAGAC+TGG - chr2_1:11204582-11204601 Msa0194800:intron 35.0%
!! TTGATGCAGGTATTGACTAA+TGG - chr2_1:11204822-11204841 Msa0194800:CDS 35.0%
! AAGTGTAAAGCATAGGGTTT+TGG - chr2_1:11204854-11204873 Msa0194800:CDS 35.0%
AGGTTGTCGATGATATACTT+TGG - chr2_1:11204894-11204913 Msa0194800:CDS 35.0%
TTGTCGATGATATACTTTGG+AGG - chr2_1:11204897-11204916 Msa0194800:CDS 35.0%
! GTTTTTACAAAGAGTTCACG+TGG - chr2_1:11204979-11204998 Msa0194800:CDS 35.0%
!! GGGCCTTTTGAAAAATCTTA+TGG - chr2_1:11205053-11205072 Msa0194800:CDS 35.0%
GAATGTTGGCACATGATATT+TGG - chr2_1:11205106-11205125 Msa0194800:CDS 35.0%
ATGCATGAAAGTTAAGGGAG+GGG + chr2_1:11202833-11202852 None:intergenic 40.0%
! GGGTGCTTTAAATGGAGAAA+TGG + chr2_1:11202858-11202877 None:intergenic 40.0%
!! GAGATGAAGGGTGCTTTAAA+TGG + chr2_1:11202866-11202885 None:intergenic 40.0%
TGGCTTAGACAAAACAACCA+TGG + chr2_1:11202963-11202982 None:intergenic 40.0%
CTATAAGAGTCTTTGCTTCC+GGG + chr2_1:11203069-11203088 None:intergenic 40.0%
GTGAAGGCTTGTAAGGAATT+TGG - chr2_1:11203088-11203107 Msa0194800:CDS 40.0%
CTTCCATAACCAAAAGGATC+AGG + chr2_1:11203226-11203245 None:intergenic 40.0%
! GTTCAAATGGTGATGTTGGT+TGG - chr2_1:11203257-11203276 Msa0194800:CDS 40.0%
! CGTCAGGGTTAGTATTAAGA+AGG + chr2_1:11203294-11203313 None:intergenic 40.0%
!! GACTTGTTAGAGATAACGTC+AGG + chr2_1:11203310-11203329 None:intergenic 40.0%
GAAAATGTGCTGTCTAGTGT+TGG - chr2_1:11203945-11203964 Msa0194800:CDS 40.0%
GTGTTGGAATTAATGGCTGA+TGG - chr2_1:11203961-11203980 Msa0194800:CDS 40.0%
!! GAATTAATGGCTGATGGGTT+GGG - chr2_1:11203967-11203986 Msa0194800:CDS 40.0%
!! AATTAATGGCTGATGGGTTG+GGG - chr2_1:11203968-11203987 Msa0194800:CDS 40.0%
! AACAAGCAGCATTGAATGGA+AGG - chr2_1:11204085-11204104 Msa0194800:CDS 40.0%
! GAAGGAATTTGCTTGGGTTT+GGG - chr2_1:11204103-11204122 Msa0194800:CDS 40.0%
! AAGGAATTTGCTTGGGTTTG+GGG - chr2_1:11204104-11204123 Msa0194800:CDS 40.0%
CTCAAGACAGAAATGACTTG+TGG + chr2_1:11204141-11204160 None:intergenic 40.0%
TTCCATCAGTGAGACAGATT+TGG + chr2_1:11204185-11204204 None:intergenic 40.0%
!! CAATGTTGGTGATACTCTTC+AGG - chr2_1:11204245-11204264 Msa0194800:intron 40.0%
GTATATGTCGAGAAAGGTCT+TGG + chr2_1:11204433-11204452 None:intergenic 40.0%
TGACTCGTATATGTCGAGAA+AGG + chr2_1:11204439-11204458 None:intergenic 40.0%
GACATATACGAGTCATGTTC+TGG - chr2_1:11204444-11204463 Msa0194800:intron 40.0%
! GATCAAGTTGCAAATCGTAG+AGG - chr2_1:11204615-11204634 Msa0194800:intron 40.0%
TTGGTTATGTCATGTGTGTG+TGG - chr2_1:11204792-11204811 Msa0194800:CDS 40.0%
TGGTTATGTCATGTGTGTGT+GGG - chr2_1:11204793-11204812 Msa0194800:CDS 40.0%
!! TGCAGGTATTGACTAATGGT+AGG - chr2_1:11204826-11204845 Msa0194800:CDS 40.0%
! ACTATCTTTTCACTCAAGGG+TGG + chr2_1:11204924-11204943 None:intergenic 40.0%
! GGCACTATCTTTTCACTCAA+GGG + chr2_1:11204927-11204946 None:intergenic 40.0%
! AGGCACTATCTTTTCACTCA+AGG + chr2_1:11204928-11204947 None:intergenic 40.0%
TTACAAAGAGTTCACGTGGT+TGG - chr2_1:11204983-11205002 Msa0194800:CDS 40.0%
AGCAATGTACAATTCAAGGC+TGG - chr2_1:11205016-11205035 Msa0194800:CDS 40.0%
!! TTCTTCAAAGTGGTGGACCA+TGG - chr2_1:11203112-11203131 Msa0194800:CDS 45.0%
CCATAACCAAAAGGATCAGG+AGG + chr2_1:11203223-11203242 None:intergenic 45.0%
!! CCTCCTGATCCTTTTGGTTA+TGG - chr2_1:11203220-11203239 Msa0194800:CDS 45.0%
TTGTACGGTTGAACAAACCG+CGG - chr2_1:11203556-11203575 Msa0194800:intron 45.0%
ACGGTCAATAGTCCTATAGC+GGG + chr2_1:11203587-11203606 None:intergenic 45.0%
CACGGTCAATAGTCCTATAG+CGG + chr2_1:11203588-11203607 None:intergenic 45.0%
GTTGTGAAAATTAGACCGGC+CGG + chr2_1:11203642-11203661 None:intergenic 45.0%
GCTATTATGTAGGTCTGCTG+TGG - chr2_1:11203900-11203919 Msa0194800:CDS 45.0%
! GGAATTAATGGCTGATGGGT+TGG - chr2_1:11203966-11203985 Msa0194800:CDS 45.0%
! GTGCAACAAGCAGCATTGAA+TGG - chr2_1:11204081-11204100 Msa0194800:CDS 45.0%
! GGAAGGAATTTGCTTGGGTT+TGG - chr2_1:11204102-11204121 Msa0194800:CDS 45.0%
CTCCAAATCTGTCTCACTGA+TGG - chr2_1:11204180-11204199 Msa0194800:CDS 45.0%
TCTGTCTCACTGATGGAACT+TGG - chr2_1:11204187-11204206 Msa0194800:CDS 45.0%
CTGTCTCACTGATGGAACTT+GGG - chr2_1:11204188-11204207 Msa0194800:CDS 45.0%
! TGAAGTGGGGGTCTGTTTTA+AGG - chr2_1:11204751-11204770 Msa0194800:intron 45.0%
!! GAAGTGGGGGTCTGTTTTAA+GGG - chr2_1:11204752-11204771 Msa0194800:intron 45.0%
! GTGTGGGTTGAAATTGATGC+AGG - chr2_1:11204809-11204828 Msa0194800:CDS 45.0%
TGGCTGACACAACAAAGTCA+AGG - chr2_1:11204874-11204893 Msa0194800:CDS 45.0%
! AGGCTGGCTGATTATAGACT+TGG - chr2_1:11205032-11205051 Msa0194800:CDS 45.0%
! GGCTGGCTGATTATAGACTT+GGG - chr2_1:11205033-11205052 Msa0194800:CDS 45.0%
ACGCGTACACCCAAAAAGAA+AGG + chr2_1:11205132-11205151 None:intergenic 45.0%
!!! TCTTTTTGGGTGTACGCGTT+TGG - chr2_1:11205133-11205152 Msa0194800:CDS 45.0%
!!! CTTTTTGGGTGTACGCGTTT+GGG - chr2_1:11205134-11205153 Msa0194800:CDS 45.0%
GCTCTGTCTTTCTCTGACTG+TGG + chr2_1:11203196-11203215 None:intergenic 50.0%
CAGTCAGAGAAAGACAGAGC+TGG - chr2_1:11203196-11203215 Msa0194800:CDS 50.0%
!! CATCGGTTCGATCACTGTTC+CGG + chr2_1:11203435-11203454 None:intergenic 50.0%
ACCGTGTTTGAACCAACAGC+CGG - chr2_1:11203602-11203621 Msa0194800:intron 50.0%
!! TCCGGCTGTTGGTTCAAACA+CGG + chr2_1:11203606-11203625 None:intergenic 50.0%
! ATGCTGCTTGTTGCACCTCA+GGG + chr2_1:11204077-11204096 None:intergenic 50.0%
! AATGCTGCTTGTTGCACCTC+AGG + chr2_1:11204078-11204097 None:intergenic 50.0%
TCTTTGCTTCCGGGTCTGCA+AGG + chr2_1:11203060-11203079 None:intergenic 55.0%
GGTGGACCATGGTGTTCCAT+TGG - chr2_1:11203123-11203142 Msa0194800:CDS 55.0%
! GCTGGTCCTCCTGATCCTTT+TGG - chr2_1:11203214-11203233 Msa0194800:CDS 55.0%
GTTTGAACCAACAGCCGGAC+TGG - chr2_1:11203607-11203626 Msa0194800:intron 55.0%
!! ATGGGTTGGGGATTGAGCCA+AGG - chr2_1:11203980-11203999 Msa0194800:CDS 55.0%
TGTCGTCGACCTTGCAGACC+CGG - chr2_1:11203048-11203067 Msa0194800:CDS 60.0%
!! TCCTATAGCGGGTTGAGCCG+CGG + chr2_1:11203576-11203595 None:intergenic 60.0%
! GCTTGTTGCACCTCAGGGCA+CGG + chr2_1:11204072-11204091 None:intergenic 60.0%
GGGTCTGCAAGGTCGACGAC+AGG + chr2_1:11203049-11203068 None:intergenic 65.0%
ACCGCGGCTCAACCCGCTAT+AGG - chr2_1:11203572-11203591 Msa0194800:intron 65.0%
!! GAACCAACAGCCGGACTGGC+TGG - chr2_1:11203611-11203630 Msa0194800:intron 65.0%
CAACCAGCCAGTCCGGCTGT+TGG + chr2_1:11203617-11203636 None:intergenic 65.0%
!! GCCGGACTGGCTGGTTGAAC+CGG - chr2_1:11203620-11203639 Msa0194800:intron 65.0%
! GCCGGTTCAACCAGCCAGTC+CGG + chr2_1:11203624-11203643 None:intergenic 65.0%
! GACTGGCTGGTTGAACCGGC+CGG - chr2_1:11203624-11203643 Msa0194800:intron 65.0%
CCTCAGGGCACGGTGGGTAA+TGG + chr2_1:11204062-11204081 None:intergenic 65.0%
CCATTACCCACCGTGCCCTG+AGG - chr2_1:11204059-11204078 Msa0194800:CDS 65.0%
GTTGCACCTCAGGGCACGGT+GGG + chr2_1:11204068-11204087 None:intergenic 65.0%
TGTTGCACCTCAGGGCACGG+TGG + chr2_1:11204069-11204088 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 11202799 11205323 11202799 ID=Msa0194800;Name=Msa0194800
chr2_1 mRNA 11202799 11205323 11202799 ID=Msa0194800-mRNA-1;Parent=Msa0194800;Name=Msa0194800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=163|0.5|0.66|1|1|1|3|241|354
chr2_1 exon 11202799 11203291 11202799 ID=Msa0194800-mRNA-1:exon:4993;Parent=Msa0194800-mRNA-1
chr2_1 exon 11203802 11204210 11203802 ID=Msa0194800-mRNA-1:exon:4992;Parent=Msa0194800-mRNA-1
chr2_1 exon 11204757 11205323 11204757 ID=Msa0194800-mRNA-1:exon:4991;Parent=Msa0194800-mRNA-1
chr2_1 five_prime_UTR 11205161 11205323 11205161 ID=Msa0194800-mRNA-1:five_prime_utr;Parent=Msa0194800-mRNA-1
chr2_1 CDS 11204757 11205160 11204757 ID=Msa0194800-mRNA-1:cds;Parent=Msa0194800-mRNA-1
chr2_1 CDS 11203802 11204210 11203802 ID=Msa0194800-mRNA-1:cds;Parent=Msa0194800-mRNA-1
chr2_1 CDS 11203040 11203291 11203040 ID=Msa0194800-mRNA-1:cds;Parent=Msa0194800-mRNA-1
chr2_1 three_prime_UTR 11202799 11203039 11202799 ID=Msa0194800-mRNA-1:three_prime_utr;Parent=Msa0194800-mRNA-1
Gene Sequence

>Msa0194800

ATGGTTGTTTTGTCTAAGCCAACATTAAATAATTTCTTACTTGTCAAGTCATGCAAACCATCAACAACTTTGTTGAATGGTATTCCTGTCGTCGACCTTGCAGACCCGGAAGCAAAGACTCTTATAGTGAAGGCTTGTAAGGAATTTGGATTCTTCAAAGTGGTGGACCATGGTGTTCCATTGGAATTTATGTCCAATTTGGAAAATGAAGCACTAAGGTTTTTCAAAAAACCACAGTCAGAGAAAGACAGAGCTGGTCCTCCTGATCCTTTTGGTTATGGAAGTAAGAGAATTGGTTCAAATGGTGATGTTGGTTGGGTTGAATATATCCTTCTTAATACTAACCCTGACGTTATCTCTAACAAGTCTCTTTCCTTTTACCGTGAAAATCGACAAAATCTAAGGTCTGCTGTGGAAGATTATATTGCTGCAATGAAGAAAATGTGCTGTCTAGTGTTGGAATTAATGGCTGATGGGTTGGGGATTGAGCCAAGGAATGTGTTAAGCAAGTTATTGAAAGATGAGAAAAGTGATTCTTGTTTCAGAATTAACCATTACCCACCGTGCCCTGAGGTGCAACAAGCAGCATTGAATGGAAGGAATTTGCTTGGGTTTGGGGAGCATACAGACCCACAAGTCATTTCTGTCTTGAGATCTAATAGCACATCAGGACTCCAAATCTGTCTCACTGATGGAACTTGGGTTTCAGTTCCACCTGATCACACTTCTTTTTTCATCAATGTTGGTGATACTCTTCAGGTTCGTAATTTTCGATATCGATTAGATATGTTATATGTTGGTGATACTCTTCAGGTATTGACTAATGGTAGGTTTAAAAGTGTAAAGCATAGGGTTTTGGCTGACACAACAAAGTCAAGGTTGTCGATGATATACTTTGGAGGACCACCCTTGAGTGAAAAGATAGTGCCTTTACCATCTTTAATGTTAAAAAAAGAAGAAAGTTTTTACAAAGAGTTCACGTGGTTGGAGTACAAGAAAGCAATGTACAATTCAAGGCTGGCTGATTATAGACTTGGGCCTTTTGAAAAATCTTATGGCAAATGA
Protein sequence

>Msa0194800

MVVLSKPTLNNFLLVKSCKPSTTLLNGIPVVDLADPEAKTLIVKACKEFGFFKVVDHGVPLEFMSNLENEALRFFKKPQSEKDRAGPPDPFGYGSKRIGSNGDVGWVEYILLNTNPDVISNKSLSFYRENRQNLRSAVEDYIAAMKKMCCLVLELMADGLGIEPRNVLSKLLKDEKSDSCFRINHYPPCPEVQQAALNGRNLLGFGEHTDPQVISVLRSNSTSGLQICLTDGTWVSVPPDHTSFFINVGDTLQVRNFRYRLDMLYVGDTLQVLTNGRFKSVKHRVLADTTKSRLSMIYFGGPPLSEKIVPLPSLMLKKEESFYKEFTWLEYKKAMYNSRLADYRLGPFEKSYGK*