Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0022520 | Msa0164410 | 0.868725 | 5.274307e-66 | -8.615850e-47 |
Msa0118190 | Msa0164410 | 0.834914 | 2.274717e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0164410 | MtrunA17_Chr1g0177221 | 48.352 | 91 | 16 | 2 | 98 | 188 | 72 | 131 | 1.11e-13 | 67.4 |
Msa0164410 | MtrunA17_Chr1g0160181 | 85.714 | 35 | 5 | 0 | 154 | 188 | 97 | 131 | 1.22e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 56 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCACTTCTTCTCTATATTT+AGG | 0.189515 | 1_4:-43855214 | Msa0164410:CDS |
TGGTCAATGCTTCTCTTTCT+TGG | 0.212191 | 1_4:-43854473 | Msa0164410:CDS |
ACAAATGTCCTTGGTGCTTT+TGG | 0.217684 | 1_4:+43855462 | None:intergenic |
GGTCAATGCTTCTCTTTCTT+GGG | 0.240657 | 1_4:-43854472 | Msa0164410:CDS |
AGGTCAATGCTTCTCTTTCT+TGG | 0.242384 | 1_4:-43850649 | Msa0164410:CDS |
CTCTTTCTTTCATGTTCATT+TGG | 0.243342 | 1_4:+43855688 | None:intergenic |
AGGAATCTAATTTCTAATTC+TGG | 0.251850 | 1_4:-43855557 | Msa0164410:five_prime_UTR |
GGTCAATGCTTCTCTTTCTT+GGG | 0.269158 | 1_4:-43850648 | Msa0164410:CDS |
TCACAATCTTCATCTAAATA+AGG | 0.269539 | 1_4:-43855581 | Msa0164410:five_prime_UTR |
AAGCTAACGTCAGCATCTTT+TGG | 0.286395 | 1_4:-43850621 | Msa0164410:CDS |
AAGCTAACGTCAGCATCTTT+TGG | 0.286395 | 1_4:-43854445 | Msa0164410:CDS |
AAACAGACCTGTGAACAATT+TGG | 0.334036 | 1_4:+43855412 | None:intergenic |
TATCTTCAAAATATTGTGAT+TGG | 0.369162 | 1_4:+43855247 | None:intergenic |
TCTTTCATGTTCATTTGGTT+AGG | 0.393780 | 1_4:+43855693 | None:intergenic |
TTTCGCTTGTGGCTCGACTT+AGG | 0.417776 | 1_4:+43855720 | None:intergenic |
CGACTTAGGTGTTGAAGTCT+TGG | 0.423117 | 1_4:+43855734 | None:intergenic |
GCAAGTATAAAGGTCATAGA+AGG | 0.429411 | 1_4:+43850576 | None:intergenic |
GCAAGTATAAAGGTCATAGA+AGG | 0.429411 | 1_4:+43854400 | None:intergenic |
AAATACCCGAACTGTCATCT+TGG | 0.440634 | 1_4:+43854643 | None:intergenic |
TTTATGTACATCAGCGTTGT+TGG | 0.444344 | 1_4:-43850683 | Msa0164410:intron |
TAAAACTACAACACAACCTC+TGG | 0.445687 | 1_4:-43855273 | Msa0164410:CDS |
ACACGACGACAACAGCATTC+CGG | 0.465397 | 1_4:+43855096 | None:intergenic |
GTCAATGCTTCTCTTTCTTG+GGG | 0.468477 | 1_4:-43854471 | Msa0164410:CDS |
GTCAATGCTTCTCTTTCTTG+GGG | 0.471142 | 1_4:-43850647 | Msa0164410:CDS |
CATTGTACCAAATTGTTCAC+AGG | 0.496006 | 1_4:-43855419 | Msa0164410:CDS |
TAGACCCAAGATGACAGTTC+GGG | 0.506379 | 1_4:-43854648 | Msa0164410:intron |
TTGTGAAATAAGAGAAAAGA+TGG | 0.509291 | 1_4:+43855598 | None:intergenic |
AATACCCGAACTGTCATCTT+GGG | 0.523300 | 1_4:+43854644 | None:intergenic |
CATTCCGGTGCGGTAGTTGA+CGG | 0.525239 | 1_4:+43855111 | None:intergenic |
TTAGACCCAAGATGACAGTT+CGG | 0.532977 | 1_4:-43854649 | Msa0164410:CDS |
CGTTGTTGGAGGAGTGGTGG+AGG | 0.535445 | 1_4:-43850669 | Msa0164410:CDS |
GAAGGATTGTAGTTTATGAA+AGG | 0.536578 | 1_4:+43855154 | None:intergenic |
ATGTACATCAGCGTTGTTGG+AGG | 0.537522 | 1_4:-43850680 | Msa0164410:intron |
TCCTAAATATAGAGAAGAAG+TGG | 0.540737 | 1_4:+43855213 | None:intergenic |
TTGTAGAAAGTGATAGTGAA+AGG | 0.541732 | 1_4:+43855180 | None:intergenic |
GCAGACGTTGGTGCTTGCGA+AGG | 0.543362 | 1_4:+43855136 | None:intergenic |
TGTAGAAAGTGATAGTGAAA+GGG | 0.550270 | 1_4:+43855181 | None:intergenic |
AGACCGTGAACAAATGTCCT+TGG | 0.564640 | 1_4:+43855453 | None:intergenic |
TATAAAGGTCATAGAAGGAA+CGG | 0.579409 | 1_4:+43850581 | None:intergenic |
TATAAAGGTCATAGAAGGAA+CGG | 0.579409 | 1_4:+43854405 | None:intergenic |
GCACCAAGGACATTTGTTCA+CGG | 0.580615 | 1_4:-43855456 | Msa0164410:CDS |
TAGTTGACGGCGGCAGACGT+TGG | 0.583127 | 1_4:+43855124 | None:intergenic |
AATCTTCATCTAAATAAGGA+AGG | 0.583600 | 1_4:-43855577 | Msa0164410:five_prime_UTR |
CAGCGTTGTTGGAGGAGTGG+TGG | 0.584318 | 1_4:-43850672 | Msa0164410:CDS |
TGCACAACATGATAAGAAGA+TGG | 0.587404 | 1_4:-43855635 | Msa0164410:five_prime_UTR |
GCCGCCGTCAACTACCGCAC+CGG | 0.593698 | 1_4:-43855115 | Msa0164410:CDS |
TTTATTTATAGGATAACACT+TGG | 0.596420 | 1_4:-43854493 | Msa0164410:intron |
CTGTGAACAATTTGGTACAA+TGG | 0.605661 | 1_4:+43855420 | None:intergenic |
CATCAGCGTTGTTGGAGGAG+TGG | 0.619968 | 1_4:-43850675 | Msa0164410:intron |
TATGCACAATTGCACATGGA+TGG | 0.639732 | 1_4:-43855498 | Msa0164410:exon |
AATTGTGCATAGCATAGTCA+CGG | 0.655371 | 1_4:+43855510 | None:intergenic |
ATATTGTGATTGGTATCCAG+AGG | 0.656570 | 1_4:+43855257 | None:intergenic |
TGCCAAACCCAAAAGCACCA+AGG | 0.661034 | 1_4:-43855470 | Msa0164410:CDS |
ATGCTATGCACAATTGCACA+TGG | 0.666530 | 1_4:-43855502 | Msa0164410:exon |
TCCGGTGCGGTAGTTGACGG+CGG | 0.677860 | 1_4:+43855114 | None:intergenic |
ACGACAACAGCATTCCGGTG+CGG | 0.747692 | 1_4:+43855101 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTTTTTAATATAAATCAATT+AGG | - | chr1_4:43851582-43851601 | Msa0164410:intron | 10.0% |
!! | CTTAACAAAATTAATAAATA+AGG | + | chr1_4:43852405-43852424 | None:intergenic | 10.0% |
!! | CCTAATAAAATTAATAAATA+AGG | + | chr1_4:43852713-43852732 | None:intergenic | 10.0% |
!!! | CCTTATTTATTAATTTTATT+AGG | - | chr1_4:43852710-43852729 | Msa0164410:intron | 10.0% |
!! | TTTATAGTATTAAAAAATTC+TGG | - | chr1_4:43853631-43853650 | Msa0164410:intron | 10.0% |
!!! | TTCTAAAAAAATTAAAATTC+TGG | + | chr1_4:43853957-43853976 | None:intergenic | 10.0% |
!! | ATGAAAAAAATTGAAAAAAA+CGG | + | chr1_4:43854031-43854050 | None:intergenic | 10.0% |
!! | TTTAAAAAACAAAAAAATTC+TGG | + | chr1_4:43854164-43854183 | None:intergenic | 10.0% |
!! | GAAAAAATATTAAAAAATTC+TGG | + | chr1_4:43854212-43854231 | None:intergenic | 10.0% |
!! | ATAAAAAATTGAAAAAATTC+TGG | + | chr1_4:43854300-43854319 | None:intergenic | 10.0% |
!! | AAAAAAAAATGAAAAAATTC+TGG | + | chr1_4:43854369-43854388 | None:intergenic | 10.0% |
!! | AGAATAAAATATAAGTAAAA+CGG | + | chr1_4:43854966-43854985 | None:intergenic | 10.0% |
!!! | ATCATAATGATATTTTTTTA+AGG | + | chr1_4:43855011-43855030 | None:intergenic | 10.0% |
!! | TCAAATATTAGATTTAAATT+TGG | - | chr1_4:43855102-43855121 | Msa0164410:CDS | 10.0% |
!! | TTCTTATATTTATCAAAATA+GGG | + | chr1_4:43855137-43855156 | None:intergenic | 10.0% |
!! | TTTCTTATATTTATCAAAAT+AGG | + | chr1_4:43855138-43855157 | None:intergenic | 10.0% |
!! | ACATTAATTTACTCAATATA+TGG | + | chr1_4:43851727-43851746 | None:intergenic | 15.0% |
!! | AAAAATTAATGCAAGTATAA+AGG | + | chr1_4:43851932-43851951 | None:intergenic | 15.0% |
!!! | TTATACTTGCATTAATTTTT+CGG | - | chr1_4:43851932-43851951 | Msa0164410:intron | 15.0% |
!! | CAAAATATTGACAAAAAAAA+AGG | + | chr1_4:43852547-43852566 | None:intergenic | 15.0% |
!! | TACAAAATATTGTCAAAAAA+AGG | + | chr1_4:43852626-43852645 | None:intergenic | 15.0% |
!! | AAATTAATAAATAAGGATCA+GGG | + | chr1_4:43852706-43852725 | None:intergenic | 15.0% |
!! | AAAATTAATAAATAAGGATC+AGG | + | chr1_4:43852707-43852726 | None:intergenic | 15.0% |
!!! | CAAAATTTTTTTATAGCTTT+TGG | - | chr1_4:43853427-43853446 | Msa0164410:intron | 15.0% |
!!! | CAAATTTTTTTTATAGCTTT+TGG | - | chr1_4:43853488-43853507 | Msa0164410:intron | 15.0% |
!! | CTATAAAAAAAAAATTTGCA+TGG | + | chr1_4:43853547-43853566 | None:intergenic | 15.0% |
!! | AAAATTATAAAAGATTTGCA+GGG | + | chr1_4:43854406-43854425 | None:intergenic | 15.0% |
!! | AAAAATTATAAAAGATTTGC+AGG | + | chr1_4:43854405-43854424 | None:intergenic | 15.0% |
!! | TGAAAATAAAAATGAAATTC+TGG | + | chr1_4:43853921-43853940 | None:intergenic | 15.0% |
!! | AAAAATTATAAAAGATTTGC+AGG | - | chr1_4:43854405-43854424 | Msa0164410:CDS | 15.0% |
!! | AAAATTATAAAAGATTTGCA+GGG | - | chr1_4:43854406-43854425 | Msa0164410:CDS | 15.0% |
!!! | CAAATTTTTTTTATAGCATT+TGG | + | chr1_4:43854465-43854484 | None:intergenic | 15.0% |
!!! | CAAATTTTTTTTATAGCTTT+TGG | + | chr1_4:43853488-43853507 | None:intergenic | 15.0% |
!!! | ACTTATATTTTATTCTCATA+AGG | - | chr1_4:43854970-43854989 | Msa0164410:intron | 15.0% |
!! | AATCTAATATTTGACAAATT+AGG | + | chr1_4:43855096-43855115 | None:intergenic | 15.0% |
!! | TATATATTATGTTGAAAGTT+CGG | + | chr1_4:43855318-43855337 | None:intergenic | 15.0% |
!!! | TCTACATTAAATATTTTTTC+CGG | - | chr1_4:43855390-43855409 | Msa0164410:intron | 15.0% |
!! | AAAAATTAATGCAAGTATAA+AGG | + | chr1_4:43851932-43851951 | None:intergenic | 15.0% |
!!! | TTATACTTGCATTAATTTTT+CGG | - | chr1_4:43851932-43851951 | Msa0164410:intron | 15.0% |
!! | TATCTTCAAAATATTGTGAT+TGG | + | chr1_4:43851075-43851094 | None:intergenic | 20.0% |
!!! | TGATTTTTTTTTAATGCTTG+TGG | - | chr1_4:43851556-43851575 | Msa0164410:intron | 20.0% |
!! | TTTATTTATAGGATAACACT+TGG | - | chr1_4:43851826-43851845 | Msa0164410:intron | 20.0% |
!!! | TTTTTTAGATGGAATTTGTT+AGG | + | chr1_4:43852491-43852510 | None:intergenic | 20.0% |
!!! | CATTTTATATGGAATTTGTT+AGG | + | chr1_4:43852799-43852818 | None:intergenic | 20.0% |
!!! | AGCTATAAAAAAATTTTGCA+GGG | + | chr1_4:43853425-43853444 | None:intergenic | 20.0% |
!!! | AAGCTATAAAAAAATTTTGC+AGG | + | chr1_4:43853426-43853445 | None:intergenic | 20.0% |
!! | AGCTATAAAAAAAATTTGCA+GGG | + | chr1_4:43854528-43854547 | None:intergenic | 20.0% |
!! | AAGCTATAAAAAAAATTTGC+AGG | + | chr1_4:43854527-43854546 | None:intergenic | 20.0% |
!!! | TTAAAAATTCTGGAAAAGTT+CGG | - | chr1_4:43853757-43853776 | Msa0164410:intron | 20.0% |
!! | TATTTATAAACCGAGAATAA+GGG | + | chr1_4:43853815-43853834 | None:intergenic | 20.0% |
!! | TATAAATACACAAAAATTCC+CGG | - | chr1_4:43853827-43853846 | Msa0164410:intron | 20.0% |
!!! | AGTATTTCTCAAAAATTTTC+CGG | + | chr1_4:43853849-43853868 | None:intergenic | 20.0% |
!! | ATGCTATAAAAAAAATTTGC+AGG | - | chr1_4:43854466-43854485 | Msa0164410:CDS | 20.0% |
!! | TGCTATAAAAAAAATTTGCA+GGG | - | chr1_4:43854467-43854486 | Msa0164410:CDS | 20.0% |
!! | AAGCTATAAAAAAAATTTGC+AGG | - | chr1_4:43854527-43854546 | Msa0164410:intron | 20.0% |
!! | AGCTATAAAAAAAATTTGCA+GGG | - | chr1_4:43854528-43854547 | Msa0164410:intron | 20.0% |
!! | TAGATTTAAATTTGGCAAAT+TGG | - | chr1_4:43855110-43855129 | Msa0164410:CDS | 20.0% |
!!! | AGTCTTGGAGTTTTATTTTA+GGG | + | chr1_4:43850573-43850592 | None:intergenic | 25.0% |
!!! | AAGTCTTGGAGTTTTATTTT+AGG | + | chr1_4:43850574-43850593 | None:intergenic | 25.0% |
! | TTGTGAAATAAGAGAAAAGA+TGG | + | chr1_4:43850724-43850743 | None:intergenic | 25.0% |
! | TCACAATCTTCATCTAAATA+AGG | - | chr1_4:43850738-43850757 | Msa0164410:intron | 25.0% |
! | AATCTTCATCTAAATAAGGA+AGG | - | chr1_4:43850742-43850761 | Msa0164410:intron | 25.0% |
! | AGGAATCTAATTTCTAATTC+TGG | - | chr1_4:43850762-43850781 | Msa0164410:intron | 25.0% |
! | TTCACTCATATCTCATAATA+TGG | - | chr1_4:43850997-43851016 | Msa0164410:intron | 25.0% |
! | AATAAACAGTCTACATTCAA+AGG | - | chr1_4:43851362-43851381 | Msa0164410:intron | 25.0% |
! | TAAATCAATTAGGTTACTTG+TGG | - | chr1_4:43851592-43851611 | Msa0164410:intron | 25.0% |
!!! | GTATCTAAAACACTTTTAGT+CGG | + | chr1_4:43852100-43852119 | None:intergenic | 25.0% |
!!! | CATTTTATTTTTGAGCAGAT+TGG | - | chr1_4:43852193-43852212 | Msa0164410:intron | 25.0% |
! | CAAAAGGATATGAATGAAAT+TGG | + | chr1_4:43852524-43852543 | None:intergenic | 25.0% |
! | TTGACAAAAAAAAAGGCAAA+AGG | + | chr1_4:43852540-43852559 | None:intergenic | 25.0% |
!!! | CATTTTAGAGGGAAATTATT+AGG | + | chr1_4:43852751-43852770 | None:intergenic | 25.0% |
!! | AGGAATTGCTACATTTTATA+TGG | + | chr1_4:43852810-43852829 | None:intergenic | 25.0% |
! | GAAAAGTTAGGAGAAATATT+AGG | + | chr1_4:43852830-43852849 | None:intergenic | 25.0% |
! | ATTTGGATGAATGGATAAAA+GGG | + | chr1_4:43853081-43853100 | None:intergenic | 25.0% |
! | TATTTGGATGAATGGATAAA+AGG | + | chr1_4:43853082-43853101 | None:intergenic | 25.0% |
! | AATGGAAACATATATGACTA+TGG | - | chr1_4:43853268-43853287 | Msa0164410:intron | 25.0% |
!!! | CATATTTTTTCCCTTATTCT+CGG | - | chr1_4:43853802-43853821 | Msa0164410:intron | 25.0% |
! | GTATTTATAAACCGAGAATA+AGG | + | chr1_4:43853816-43853835 | None:intergenic | 25.0% |
!! | GTATTTCTCAAAAATTTTCC+GGG | + | chr1_4:43853848-43853867 | None:intergenic | 25.0% |
! | ATTCAAAACTTAGATTAGCA+AGG | + | chr1_4:43854646-43854665 | None:intergenic | 25.0% |
! | GAATACTTATCAAACACTTA+TGG | - | chr1_4:43854662-43854681 | Msa0164410:intron | 25.0% |
! | TTTATCATATTTGTGCAGAT+TGG | - | chr1_4:43855163-43855182 | Msa0164410:CDS | 25.0% |
!! | TTGATCACATTAATCTTTTC+CGG | + | chr1_4:43855412-43855431 | None:intergenic | 25.0% |
! | TTAAGAGATAGCATTATACA+AGG | - | chr1_4:43855472-43855491 | Msa0164410:CDS | 25.0% |
! | GTACATAAAACAAATCAAAG+TGG | + | chr1_4:43855625-43855644 | None:intergenic | 25.0% |
!!! | GTCTTGGAGTTTTATTTTAG+GGG | + | chr1_4:43850572-43850591 | None:intergenic | 30.0% |
TCTTTCATGTTCATTTGGTT+AGG | + | chr1_4:43850629-43850648 | None:intergenic | 30.0% | |
CTCTTTCTTTCATGTTCATT+TGG | + | chr1_4:43850634-43850653 | None:intergenic | 30.0% | |
!! | TGAGTTGATTGAATTAGTAG+AGG | - | chr1_4:43850973-43850992 | Msa0164410:intron | 30.0% |
! | GAGTTGATTGAATTAGTAGA+GGG | - | chr1_4:43850974-43850993 | Msa0164410:intron | 30.0% |
CTCATAATATGGTCTAAACA+TGG | - | chr1_4:43851008-43851027 | Msa0164410:intron | 30.0% | |
TCCTAAATATAGAGAAGAAG+TGG | + | chr1_4:43851109-43851128 | None:intergenic | 30.0% | |
! | TGTAGAAAGTGATAGTGAAA+GGG | + | chr1_4:43851141-43851160 | None:intergenic | 30.0% |
! | TTGTAGAAAGTGATAGTGAA+AGG | + | chr1_4:43851142-43851161 | None:intergenic | 30.0% |
GAAGGATTGTAGTTTATGAA+AGG | + | chr1_4:43851168-43851187 | None:intergenic | 30.0% | |
! | GCATAAACTACACAATTTTC+TGG | + | chr1_4:43851260-43851279 | None:intergenic | 30.0% |
!!! | AATTGTTTTTTTACCTTGCC+CGG | + | chr1_4:43851453-43851472 | None:intergenic | 30.0% |
TAATTTCTTCCTCTTTGTTC+AGG | - | chr1_4:43851643-43851662 | Msa0164410:intron | 30.0% | |
TATAAAGGTCATAGAAGGAA+CGG | + | chr1_4:43851917-43851936 | None:intergenic | 30.0% | |
!! | CTTGCATTAATTTTTCGGTA+AGG | - | chr1_4:43851937-43851956 | Msa0164410:intron | 30.0% |
!! | CGTGCTTGTTTCTATTATTA+CGG | + | chr1_4:43852041-43852060 | None:intergenic | 30.0% |
ATTGGAACGTATGAAGATAA+AGG | - | chr1_4:43852211-43852230 | Msa0164410:intron | 30.0% | |
!! | TTCCTCCAATTTGCTATATT+AGG | - | chr1_4:43852450-43852469 | Msa0164410:intron | 30.0% |
AACCTAATATAGCAAATTGG+AGG | + | chr1_4:43852455-43852474 | None:intergenic | 30.0% | |
GCTAACCTAATATAGCAAAT+TGG | + | chr1_4:43852458-43852477 | None:intergenic | 30.0% | |
CAACAGGATAGGAATAAAAT+TGG | + | chr1_4:43852603-43852622 | None:intergenic | 30.0% | |
TATTGTCAAAAAAAGGCAAC+AGG | + | chr1_4:43852619-43852638 | None:intergenic | 30.0% | |
CGAGTTTGCATGAAAATTTA+GGG | + | chr1_4:43852679-43852698 | None:intergenic | 30.0% | |
! | CCTAAATTTTCATGCAAACT+CGG | - | chr1_4:43852677-43852696 | Msa0164410:intron | 30.0% |
ATGGATGAATATAAGATGCA+TGG | + | chr1_4:43853045-43853064 | None:intergenic | 30.0% | |
AAAGGGTTGTTATAGATAGA+TGG | + | chr1_4:43853064-43853083 | None:intergenic | 30.0% | |
!! | TTTTGAAAGCCATTGGTATT+TGG | + | chr1_4:43853098-43853117 | None:intergenic | 30.0% |
ACATACAACTTCATAAACGT+TGG | + | chr1_4:43853126-43853145 | None:intergenic | 30.0% | |
GTACAAGATTGAAAGAAGAT+AGG | + | chr1_4:43853151-43853170 | None:intergenic | 30.0% | |
!!! | TCCATTTTGATTACCAAGAA+CGG | + | chr1_4:43853254-43853273 | None:intergenic | 30.0% |
CAATAAGTTCACAAACTTAC+GGG | + | chr1_4:43853326-43853345 | None:intergenic | 30.0% | |
CCAATAAGTTCACAAACTTA+CGG | + | chr1_4:43853327-43853346 | None:intergenic | 30.0% | |
TTATTGGACTCATATCTTCA+AGG | - | chr1_4:43853340-43853359 | Msa0164410:intron | 30.0% | |
! | TTGTGGCTTAAATATGGTTT+TGG | - | chr1_4:43853367-43853386 | Msa0164410:intron | 30.0% |
!!! | AAAACTGGCTTATTTTTGCA+GGG | + | chr1_4:43853454-43853473 | None:intergenic | 30.0% |
!!! | AAAACTGGTCTATTTTTGCA+GGG | + | chr1_4:43853515-43853534 | None:intergenic | 30.0% |
!!! | AAAACTGACCTATTTTTGCA+GGG | - | chr1_4:43854499-43854518 | Msa0164410:intron | 30.0% |
! | ACAAGGCTTAAATATGGTTT+TGG | + | chr1_4:43854586-43854605 | None:intergenic | 30.0% |
ATTGAGACAAGGCTTAAATA+TGG | + | chr1_4:43854592-43854611 | None:intergenic | 30.0% | |
! | TGTTTGTTGGTTAGTCAAAA+CGG | + | chr1_4:43854756-43854775 | None:intergenic | 30.0% |
TCTGATCAAAGAGTGAAAAA+TGG | - | chr1_4:43854803-43854822 | Msa0164410:intron | 30.0% | |
! | ATTGGAAGGCATGAAAATTA+AGG | - | chr1_4:43855181-43855200 | Msa0164410:CDS | 30.0% |
! | CAACATAAGTCTTTTTGGAT+CGG | - | chr1_4:43855361-43855380 | Msa0164410:intron | 30.0% |
TATAAAGGTCATAGAAGGAA+CGG | + | chr1_4:43851917-43851936 | None:intergenic | 30.0% | |
TGCACAACATGATAAGAAGA+TGG | - | chr1_4:43850684-43850703 | Msa0164410:intron | 35.0% | |
AATTGTGCATAGCATAGTCA+CGG | + | chr1_4:43850812-43850831 | None:intergenic | 35.0% | |
CTGTGAACAATTTGGTACAA+TGG | + | chr1_4:43850902-43850921 | None:intergenic | 35.0% | |
CATTGTACCAAATTGTTCAC+AGG | - | chr1_4:43850900-43850919 | Msa0164410:intron | 35.0% | |
AAACAGACCTGTGAACAATT+TGG | + | chr1_4:43850910-43850929 | None:intergenic | 35.0% | |
TAAAACTACAACACAACCTC+TGG | - | chr1_4:43851046-43851065 | Msa0164410:intron | 35.0% | |
ATATTGTGATTGGTATCCAG+AGG | + | chr1_4:43851065-43851084 | None:intergenic | 35.0% | |
GCCACTTCTTCTCTATATTT+AGG | - | chr1_4:43851105-43851124 | Msa0164410:intron | 35.0% | |
! | TTGATTTGATGTAACCAGCA+AGG | - | chr1_4:43851305-43851324 | Msa0164410:intron | 35.0% |
CAAAAATGATCCTTCAACTG+TGG | - | chr1_4:43851401-43851420 | Msa0164410:intron | 35.0% | |
CGAAGGATTACTTTAATCTC+CGG | - | chr1_4:43851431-43851450 | Msa0164410:intron | 35.0% | |
GAAGGATTACTTTAATCTCC+GGG | - | chr1_4:43851432-43851451 | Msa0164410:intron | 35.0% | |
TCTAATGTTCCTGAACAAAG+AGG | + | chr1_4:43851655-43851674 | None:intergenic | 35.0% | |
GCAAGTATAAAGGTCATAGA+AGG | + | chr1_4:43851922-43851941 | None:intergenic | 35.0% | |
CGTATGAAGATAAAGGAGAT+TGG | - | chr1_4:43852218-43852237 | Msa0164410:intron | 35.0% | |
! | TAGGGTCATTCACATTTTCA+GGG | + | chr1_4:43852355-43852374 | None:intergenic | 35.0% |
!!! | GTGCGATGCATTTTTTTAGA+TGG | + | chr1_4:43852502-43852521 | None:intergenic | 35.0% |
TCAAAAAAAGGCAACAGGAT+AGG | + | chr1_4:43852614-43852633 | None:intergenic | 35.0% | |
CCGAGTTTGCATGAAAATTT+AGG | + | chr1_4:43852680-43852699 | None:intergenic | 35.0% | |
! | ACCTAATGCAGCATTTTAGA+GGG | + | chr1_4:43852762-43852781 | None:intergenic | 35.0% |
! | AACCTAATGCAGCATTTTAG+AGG | + | chr1_4:43852763-43852782 | None:intergenic | 35.0% |
CATGACAGGAATGAAAAGTT+AGG | + | chr1_4:43852842-43852861 | None:intergenic | 35.0% | |
TCCATTCATCCAAATACCAA+TGG | - | chr1_4:43853086-43853105 | Msa0164410:intron | 35.0% | |
!! | GGAACATTTTTGAAAGCCAT+TGG | + | chr1_4:43853105-43853124 | None:intergenic | 35.0% |
GTTTATTGTACCCTTGCAAA+TGG | + | chr1_4:43853215-43853234 | None:intergenic | 35.0% | |
! | GAACGGTTTTACAATAAGCA+GGG | + | chr1_4:43853237-43853256 | None:intergenic | 35.0% |
! | AGAACGGTTTTACAATAAGC+AGG | + | chr1_4:43853238-43853257 | None:intergenic | 35.0% |
GCTTATTGTAAAACCGTTCT+TGG | - | chr1_4:43853238-43853257 | Msa0164410:intron | 35.0% | |
! | ACCGTTCTTGGTAATCAAAA+TGG | - | chr1_4:43853250-43853269 | Msa0164410:intron | 35.0% |
CCGTAAGTTTGTGAACTTAT+TGG | - | chr1_4:43853324-43853343 | Msa0164410:intron | 35.0% | |
CATATCTTCAAGGTAGTTTG+TGG | - | chr1_4:43853350-43853369 | Msa0164410:intron | 35.0% | |
! | GGTAGTTTGTGGCTTAAATA+TGG | - | chr1_4:43853361-43853380 | Msa0164410:intron | 35.0% |
! | CAAAACTGACCTATTTTGCA+GGG | + | chr1_4:43853394-43853413 | None:intergenic | 35.0% |
!!! | CAAAACTGGCTTATTTTTGC+AGG | + | chr1_4:43853455-43853474 | None:intergenic | 35.0% |
! | CTGCAAAAATAAGCCAGTTT+TGG | - | chr1_4:43853453-43853472 | Msa0164410:intron | 35.0% |
!!! | CAAAACTGGTCTATTTTTGC+AGG | + | chr1_4:43853516-43853535 | None:intergenic | 35.0% |
! | CTGCAAAAATAGACCAGTTT+TGG | - | chr1_4:43853514-43853533 | Msa0164410:intron | 35.0% |
!! | AAAACTGGCATAGTTTTGCA+GGG | + | chr1_4:43853578-43853597 | None:intergenic | 35.0% |
!!! | AAAACTGGCCTATTTTTGCA+GGG | - | chr1_4:43854438-43854457 | Msa0164410:CDS | 35.0% |
! | CTGCAAAAATAGGTCAGTTT+TGG | + | chr1_4:43854500-43854519 | None:intergenic | 35.0% |
!!! | CAAAACTGACCTATTTTTGC+AGG | - | chr1_4:43854498-43854517 | Msa0164410:intron | 35.0% |
GAGGAAAGTCTCAAAATCTT+CGG | + | chr1_4:43854729-43854748 | None:intergenic | 35.0% | |
GACTAACCAACAAACATGTT+TGG | - | chr1_4:43854760-43854779 | Msa0164410:intron | 35.0% | |
AACCAACAAACATGTTTGGA+TGG | - | chr1_4:43854764-43854783 | Msa0164410:intron | 35.0% | |
TCATATTTGTGCAGATTGGA+AGG | - | chr1_4:43855167-43855186 | Msa0164410:CDS | 35.0% | |
GGCATGAAAATTAAGGAGAT+AGG | - | chr1_4:43855188-43855207 | Msa0164410:CDS | 35.0% | |
! | CGCATCAACATAAGTCTTTT+TGG | - | chr1_4:43855356-43855375 | Msa0164410:intron | 35.0% |
TTTATGTACATCAGCGTTGT+TGG | - | chr1_4:43855636-43855655 | Msa0164410:five_prime_UTR | 35.0% | |
GCAAGTATAAAGGTCATAGA+AGG | + | chr1_4:43851922-43851941 | None:intergenic | 35.0% | |
ATGCTATGCACAATTGCACA+TGG | - | chr1_4:43850817-43850836 | Msa0164410:intron | 40.0% | |
TATGCACAATTGCACATGGA+TGG | - | chr1_4:43850821-43850840 | Msa0164410:intron | 40.0% | |
!!! | CAAATGTCCTTGGTGCTTTT+GGG | + | chr1_4:43850859-43850878 | None:intergenic | 40.0% |
!!! | ACAAATGTCCTTGGTGCTTT+TGG | + | chr1_4:43850860-43850879 | None:intergenic | 40.0% |
CCTCATTTCATAATCCTTGC+TGG | + | chr1_4:43851322-43851341 | None:intergenic | 40.0% | |
CCAGCAAGGATTATGAAATG+AGG | - | chr1_4:43851319-43851338 | Msa0164410:intron | 40.0% | |
ACAGTCTACATTCAAAGGTG+AGG | - | chr1_4:43851367-43851386 | Msa0164410:intron | 40.0% | |
TCGAATCTTTCCACAGTTGA+AGG | + | chr1_4:43851414-43851433 | None:intergenic | 40.0% | |
TCAACTGTGGAAAGATTCGA+AGG | - | chr1_4:43851414-43851433 | Msa0164410:intron | 40.0% | |
ATTACTTTAATCTCCGGGCA+AGG | - | chr1_4:43851437-43851456 | Msa0164410:intron | 40.0% | |
TTAGACCCAAGATGACAGTT+CGG | - | chr1_4:43851670-43851689 | Msa0164410:intron | 40.0% | |
AATACCCGAACTGTCATCTT+GGG | + | chr1_4:43851678-43851697 | None:intergenic | 40.0% | |
AAATACCCGAACTGTCATCT+TGG | + | chr1_4:43851679-43851698 | None:intergenic | 40.0% | |
! | ATGACAGTTCGGGTATTTTG+TGG | - | chr1_4:43851681-43851700 | Msa0164410:intron | 40.0% |
TGGTCAATGCTTCTCTTTCT+TGG | - | chr1_4:43851846-43851865 | Msa0164410:intron | 40.0% | |
GGTCAATGCTTCTCTTTCTT+GGG | - | chr1_4:43851847-43851866 | Msa0164410:intron | 40.0% | |
GTCAATGCTTCTCTTTCTTG+GGG | - | chr1_4:43851848-43851867 | Msa0164410:intron | 40.0% | |
! | AAGCTAACGTCAGCATCTTT+TGG | - | chr1_4:43851874-43851893 | Msa0164410:intron | 40.0% |
ATTGGAACTATAGTCAGCCT+TGG | - | chr1_4:43852257-43852276 | Msa0164410:intron | 40.0% | |
TCATTAATAGTGCTCCTCCA+AGG | + | chr1_4:43852277-43852296 | None:intergenic | 40.0% | |
GACTTAGCAGCTTGAAGAAT+AGG | + | chr1_4:43852314-43852333 | None:intergenic | 40.0% | |
! | CTAGGGTCATTCACATTTTC+AGG | + | chr1_4:43852356-43852375 | None:intergenic | 40.0% |
GAAAATGTGAATGACCCTAG+TGG | - | chr1_4:43852356-43852375 | Msa0164410:intron | 40.0% | |
!! | TCCCTCTAAAATGCTGCATT+AGG | - | chr1_4:43852758-43852777 | Msa0164410:intron | 40.0% |
AAACGATGACACAACATGAC+AGG | + | chr1_4:43852856-43852875 | None:intergenic | 40.0% | |
GCCATTGGTATTTGGATGAA+TGG | + | chr1_4:43853090-43853109 | None:intergenic | 40.0% | |
TACCCTTGCAAATGGTTTCA+GGG | + | chr1_4:43853207-43853226 | None:intergenic | 40.0% | |
AAACTTACGGGATTGGGATA+AGG | + | chr1_4:43853314-43853333 | None:intergenic | 40.0% | |
GTTCACAAACTTACGGGATT+GGG | + | chr1_4:43853320-43853339 | None:intergenic | 40.0% | |
AGTTCACAAACTTACGGGAT+TGG | + | chr1_4:43853321-43853340 | None:intergenic | 40.0% | |
! | CCAAAACTGACCTATTTTGC+AGG | + | chr1_4:43853395-43853414 | None:intergenic | 40.0% |
! | CCTGCAAAATAGGTCAGTTT+TGG | - | chr1_4:43853392-43853411 | Msa0164410:intron | 40.0% |
! | GCATGGACTAAAACCAAAAC+TGG | + | chr1_4:43853530-43853549 | None:intergenic | 40.0% |
!! | CAAAACTGGCATAGTTTTGC+AGG | + | chr1_4:43853579-43853598 | None:intergenic | 40.0% |
! | CTGCAAAAATAGGCCAGTTT+TGG | + | chr1_4:43854439-43854458 | None:intergenic | 40.0% |
!!! | CAAAACTGGCCTATTTTTGC+AGG | - | chr1_4:43854437-43854456 | Msa0164410:CDS | 40.0% |
CATTTGGTCCCTGCAAAAAT+AGG | + | chr1_4:43854449-43854468 | None:intergenic | 40.0% | |
! | CTTTTGGTCCCTGCAAAAAT+AGG | + | chr1_4:43853443-43853462 | None:intergenic | 40.0% |
TGCAGGGACTAAAACCAAAA+CGG | - | chr1_4:43854422-43854441 | Msa0164410:CDS | 40.0% | |
GACCATCCAAACATGTTTGT+TGG | + | chr1_4:43854769-43854788 | None:intergenic | 40.0% | |
AGGTCAATGCTTCTCTTTCT+TGG | - | chr1_4:43855670-43855689 | Msa0164410:five_prime_UTR | 40.0% | |
GGTCAATGCTTCTCTTTCTT+GGG | - | chr1_4:43851847-43851866 | Msa0164410:intron | 40.0% | |
GTCAATGCTTCTCTTTCTTG+GGG | - | chr1_4:43851848-43851867 | Msa0164410:intron | 40.0% | |
! | AAGCTAACGTCAGCATCTTT+TGG | - | chr1_4:43851874-43851893 | Msa0164410:intron | 40.0% |
!! | CGACTTAGGTGTTGAAGTCT+TGG | + | chr1_4:43850588-43850607 | None:intergenic | 45.0% |
GCACCAAGGACATTTGTTCA+CGG | - | chr1_4:43850863-43850882 | Msa0164410:intron | 45.0% | |
AGACCGTGAACAAATGTCCT+TGG | + | chr1_4:43850869-43850888 | None:intergenic | 45.0% | |
TAGACCCAAGATGACAGTTC+GGG | - | chr1_4:43851671-43851690 | Msa0164410:intron | 45.0% | |
GGAAGTCAAGTGAAAGCGAT+TGG | - | chr1_4:43852239-43852258 | Msa0164410:intron | 45.0% | |
ATGACCCTAGTGGTTCACAT+TGG | - | chr1_4:43852366-43852385 | Msa0164410:intron | 45.0% | |
CACCCTGAAACCATTTGCAA+GGG | - | chr1_4:43853202-43853221 | Msa0164410:intron | 45.0% | |
GTACCCTTGCAAATGGTTTC+AGG | + | chr1_4:43853208-43853227 | None:intergenic | 45.0% | |
!! | GGTTTTGGTCCCTGCAAAAT+AGG | - | chr1_4:43853382-43853401 | Msa0164410:intron | 45.0% |
GCAGGGACTAAAACCAAAAC+TGG | + | chr1_4:43854423-43854442 | None:intergenic | 45.0% | |
GCAGGGACTAAAAGCAAAAC+TGG | + | chr1_4:43853593-43853612 | None:intergenic | 45.0% | |
GCAGGGACTAAAACCAAAAC+TGG | - | chr1_4:43854423-43854442 | Msa0164410:CDS | 45.0% | |
GCAGGGACTAAAACCAAAAC+GGG | - | chr1_4:43854423-43854442 | Msa0164410:CDS | 45.0% | |
! | GCGAATTGTGGATTGAGACA+AGG | + | chr1_4:43854603-43854622 | None:intergenic | 45.0% |
! | ATCTTCAAGAGCGCGAATTG+TGG | + | chr1_4:43854615-43854634 | None:intergenic | 45.0% |
ATGTACATCAGCGTTGTTGG+AGG | - | chr1_4:43855639-43855658 | Msa0164410:five_prime_UTR | 45.0% | |
!!! | TTTTGTAATTATTTATTTAT+AGG | - | chr1_4:43851815-43851834 | Msa0164410:intron | 5.0% |
!!! | AGATTTTTTTTTTTTTTTTT+TGG | - | chr1_4:43852123-43852142 | Msa0164410:intron | 5.0% |
!!! | AATTTTTTTTTTATAGTTTT+TGG | - | chr1_4:43853551-43853570 | Msa0164410:intron | 5.0% |
!! | TAAAAAAATTTAAAAAATTC+TGG | - | chr1_4:43853670-43853689 | Msa0164410:intron | 5.0% |
!! | TAAAAAAAATTTAAAAATTC+TGG | - | chr1_4:43853747-43853766 | Msa0164410:intron | 5.0% |
!! | AAAAAAATATTAAAAAATTC+TGG | + | chr1_4:43854065-43854084 | None:intergenic | 5.0% |
!! | AAAAAAATATTAAAAAATTC+TGG | + | chr1_4:43854065-43854084 | None:intergenic | 5.0% |
!! | TAAAAAAATAAAAAAATTTC+TGG | + | chr1_4:43854261-43854280 | None:intergenic | 5.0% |
!! | TAAAAAAATTAAAAAAATTC+TGG | + | chr1_4:43854338-43854357 | None:intergenic | 5.0% |
TTTCGCTTGTGGCTCGACTT+AGG | + | chr1_4:43850602-43850621 | None:intergenic | 50.0% | |
! | GGTTAGGAGCTTTTCGCTTG+TGG | + | chr1_4:43850613-43850632 | None:intergenic | 50.0% |
!! | TGCCAAACCCAAAAGCACCA+AGG | - | chr1_4:43850849-43850868 | Msa0164410:intron | 50.0% |
!!! | GTCCTTGGTGCTTTTGGGTT+TGG | + | chr1_4:43850854-43850873 | None:intergenic | 50.0% |
ACACGACGACAACAGCATTC+CGG | + | chr1_4:43851226-43851245 | None:intergenic | 50.0% | |
GGAACTATAGTCAGCCTTGG+AGG | - | chr1_4:43852260-43852279 | Msa0164410:intron | 50.0% | |
CGAGCCAATGTGAACCACTA+GGG | + | chr1_4:43852373-43852392 | None:intergenic | 50.0% | |
ACGAGCCAATGTGAACCACT+AGG | + | chr1_4:43852374-43852393 | None:intergenic | 50.0% | |
CCTTGCAAATGGTTTCAGGG+TGG | + | chr1_4:43853204-43853223 | None:intergenic | 50.0% | |
CCACCCTGAAACCATTTGCA+AGG | - | chr1_4:43853201-43853220 | Msa0164410:intron | 50.0% | |
! | CAAAACGGGCCTCTTTTGCA+GGG | - | chr1_4:43854559-43854578 | Msa0164410:intron | 50.0% |
!! | GGTTTTGGTCCCTGCAAAAG+AGG | + | chr1_4:43854571-43854590 | None:intergenic | 50.0% |
!!! | GGTGCTTTTGGGTTTGGCAG+TGG | + | chr1_4:43850848-43850867 | None:intergenic | 55.0% |
CATTCCGGTGCGGTAGTTGA+CGG | + | chr1_4:43851211-43851230 | None:intergenic | 55.0% | |
ACGACAACAGCATTCCGGTG+CGG | + | chr1_4:43851221-43851240 | None:intergenic | 55.0% | |
! | CCTGCAAAAGAGGCCCGTTT+TGG | + | chr1_4:43854561-43854580 | None:intergenic | 55.0% |
! | CCAAAACGGGCCTCTTTTGC+AGG | - | chr1_4:43854558-43854577 | Msa0164410:intron | 55.0% |
! | GGTTAGTCAAAACGGCGCTG+AGG | + | chr1_4:43854748-43854767 | None:intergenic | 55.0% |
CATCAGCGTTGTTGGAGGAG+TGG | - | chr1_4:43855644-43855663 | Msa0164410:five_prime_UTR | 55.0% | |
! | GCAGACGTTGGTGCTTGCGA+AGG | + | chr1_4:43851186-43851205 | None:intergenic | 60.0% |
TAGTTGACGGCGGCAGACGT+TGG | + | chr1_4:43851198-43851217 | None:intergenic | 60.0% | |
CAGCGTTGTTGGAGGAGTGG+TGG | - | chr1_4:43855647-43855666 | Msa0164410:five_prime_UTR | 60.0% | |
CGTTGTTGGAGGAGTGGTGG+AGG | - | chr1_4:43855650-43855669 | Msa0164410:five_prime_UTR | 60.0% | |
TCCGGTGCGGTAGTTGACGG+CGG | + | chr1_4:43851208-43851227 | None:intergenic | 65.0% | |
GCCGCCGTCAACTACCGCAC+CGG | - | chr1_4:43851204-43851223 | Msa0164410:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 43850560 | 43855781 | 43850560 | ID=Msa0164410;Name=Msa0164410 |
chr1_4 | mRNA | 43850560 | 43855781 | 43850560 | ID=Msa0164410-mRNA-1;Parent=Msa0164410;Name=Msa0164410-mRNA-1;_AED=0.35;_eAED=0.35;_QI=276|0.25|0.6|1|0|0.4|5|0|188 |
chr1_4 | exon | 43850560 | 43850691 | 43850560 | ID=Msa0164410-mRNA-1:exon:12549;Parent=Msa0164410-mRNA-1 |
chr1_4 | exon | 43854388 | 43854504 | 43854388 | ID=Msa0164410-mRNA-1:exon:12548;Parent=Msa0164410-mRNA-1 |
chr1_4 | exon | 43854649 | 43854676 | 43854649 | ID=Msa0164410-mRNA-1:exon:12547;Parent=Msa0164410-mRNA-1 |
chr1_4 | exon | 43855098 | 43855295 | 43855098 | ID=Msa0164410-mRNA-1:exon:12546;Parent=Msa0164410-mRNA-1 |
chr1_4 | exon | 43855414 | 43855781 | 43855414 | ID=Msa0164410-mRNA-1:exon:12545;Parent=Msa0164410-mRNA-1 |
chr1_4 | five_prime_UTR | 43855506 | 43855781 | 43855506 | ID=Msa0164410-mRNA-1:five_prime_utr;Parent=Msa0164410-mRNA-1 |
chr1_4 | CDS | 43855414 | 43855505 | 43855414 | ID=Msa0164410-mRNA-1:cds;Parent=Msa0164410-mRNA-1 |
chr1_4 | CDS | 43855098 | 43855295 | 43855098 | ID=Msa0164410-mRNA-1:cds;Parent=Msa0164410-mRNA-1 |
chr1_4 | CDS | 43854649 | 43854676 | 43854649 | ID=Msa0164410-mRNA-1:cds;Parent=Msa0164410-mRNA-1 |
chr1_4 | CDS | 43854388 | 43854504 | 43854388 | ID=Msa0164410-mRNA-1:cds;Parent=Msa0164410-mRNA-1 |
chr1_4 | CDS | 43850560 | 43850691 | 43850560 | ID=Msa0164410-mRNA-1:cds;Parent=Msa0164410-mRNA-1 |
Gene Sequence |
Protein sequence |