AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0164410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0164410 MtrunA17_Chr1g0177221 48.352 91 16 2 98 188 72 131 1.11e-13 67.4
Msa0164410 MtrunA17_Chr1g0160181 85.714 35 5 0 154 188 97 131 1.22e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCACTTCTTCTCTATATTT+AGG 0.189515 1_4:-43855214 Msa0164410:CDS
TGGTCAATGCTTCTCTTTCT+TGG 0.212191 1_4:-43854473 Msa0164410:CDS
ACAAATGTCCTTGGTGCTTT+TGG 0.217684 1_4:+43855462 None:intergenic
GGTCAATGCTTCTCTTTCTT+GGG 0.240657 1_4:-43854472 Msa0164410:CDS
AGGTCAATGCTTCTCTTTCT+TGG 0.242384 1_4:-43850649 Msa0164410:CDS
CTCTTTCTTTCATGTTCATT+TGG 0.243342 1_4:+43855688 None:intergenic
AGGAATCTAATTTCTAATTC+TGG 0.251850 1_4:-43855557 Msa0164410:five_prime_UTR
GGTCAATGCTTCTCTTTCTT+GGG 0.269158 1_4:-43850648 Msa0164410:CDS
TCACAATCTTCATCTAAATA+AGG 0.269539 1_4:-43855581 Msa0164410:five_prime_UTR
AAGCTAACGTCAGCATCTTT+TGG 0.286395 1_4:-43850621 Msa0164410:CDS
AAGCTAACGTCAGCATCTTT+TGG 0.286395 1_4:-43854445 Msa0164410:CDS
AAACAGACCTGTGAACAATT+TGG 0.334036 1_4:+43855412 None:intergenic
TATCTTCAAAATATTGTGAT+TGG 0.369162 1_4:+43855247 None:intergenic
TCTTTCATGTTCATTTGGTT+AGG 0.393780 1_4:+43855693 None:intergenic
TTTCGCTTGTGGCTCGACTT+AGG 0.417776 1_4:+43855720 None:intergenic
CGACTTAGGTGTTGAAGTCT+TGG 0.423117 1_4:+43855734 None:intergenic
GCAAGTATAAAGGTCATAGA+AGG 0.429411 1_4:+43850576 None:intergenic
GCAAGTATAAAGGTCATAGA+AGG 0.429411 1_4:+43854400 None:intergenic
AAATACCCGAACTGTCATCT+TGG 0.440634 1_4:+43854643 None:intergenic
TTTATGTACATCAGCGTTGT+TGG 0.444344 1_4:-43850683 Msa0164410:intron
TAAAACTACAACACAACCTC+TGG 0.445687 1_4:-43855273 Msa0164410:CDS
ACACGACGACAACAGCATTC+CGG 0.465397 1_4:+43855096 None:intergenic
GTCAATGCTTCTCTTTCTTG+GGG 0.468477 1_4:-43854471 Msa0164410:CDS
GTCAATGCTTCTCTTTCTTG+GGG 0.471142 1_4:-43850647 Msa0164410:CDS
CATTGTACCAAATTGTTCAC+AGG 0.496006 1_4:-43855419 Msa0164410:CDS
TAGACCCAAGATGACAGTTC+GGG 0.506379 1_4:-43854648 Msa0164410:intron
TTGTGAAATAAGAGAAAAGA+TGG 0.509291 1_4:+43855598 None:intergenic
AATACCCGAACTGTCATCTT+GGG 0.523300 1_4:+43854644 None:intergenic
CATTCCGGTGCGGTAGTTGA+CGG 0.525239 1_4:+43855111 None:intergenic
TTAGACCCAAGATGACAGTT+CGG 0.532977 1_4:-43854649 Msa0164410:CDS
CGTTGTTGGAGGAGTGGTGG+AGG 0.535445 1_4:-43850669 Msa0164410:CDS
GAAGGATTGTAGTTTATGAA+AGG 0.536578 1_4:+43855154 None:intergenic
ATGTACATCAGCGTTGTTGG+AGG 0.537522 1_4:-43850680 Msa0164410:intron
TCCTAAATATAGAGAAGAAG+TGG 0.540737 1_4:+43855213 None:intergenic
TTGTAGAAAGTGATAGTGAA+AGG 0.541732 1_4:+43855180 None:intergenic
GCAGACGTTGGTGCTTGCGA+AGG 0.543362 1_4:+43855136 None:intergenic
TGTAGAAAGTGATAGTGAAA+GGG 0.550270 1_4:+43855181 None:intergenic
AGACCGTGAACAAATGTCCT+TGG 0.564640 1_4:+43855453 None:intergenic
TATAAAGGTCATAGAAGGAA+CGG 0.579409 1_4:+43850581 None:intergenic
TATAAAGGTCATAGAAGGAA+CGG 0.579409 1_4:+43854405 None:intergenic
GCACCAAGGACATTTGTTCA+CGG 0.580615 1_4:-43855456 Msa0164410:CDS
TAGTTGACGGCGGCAGACGT+TGG 0.583127 1_4:+43855124 None:intergenic
AATCTTCATCTAAATAAGGA+AGG 0.583600 1_4:-43855577 Msa0164410:five_prime_UTR
CAGCGTTGTTGGAGGAGTGG+TGG 0.584318 1_4:-43850672 Msa0164410:CDS
TGCACAACATGATAAGAAGA+TGG 0.587404 1_4:-43855635 Msa0164410:five_prime_UTR
GCCGCCGTCAACTACCGCAC+CGG 0.593698 1_4:-43855115 Msa0164410:CDS
TTTATTTATAGGATAACACT+TGG 0.596420 1_4:-43854493 Msa0164410:intron
CTGTGAACAATTTGGTACAA+TGG 0.605661 1_4:+43855420 None:intergenic
CATCAGCGTTGTTGGAGGAG+TGG 0.619968 1_4:-43850675 Msa0164410:intron
TATGCACAATTGCACATGGA+TGG 0.639732 1_4:-43855498 Msa0164410:exon
AATTGTGCATAGCATAGTCA+CGG 0.655371 1_4:+43855510 None:intergenic
ATATTGTGATTGGTATCCAG+AGG 0.656570 1_4:+43855257 None:intergenic
TGCCAAACCCAAAAGCACCA+AGG 0.661034 1_4:-43855470 Msa0164410:CDS
ATGCTATGCACAATTGCACA+TGG 0.666530 1_4:-43855502 Msa0164410:exon
TCCGGTGCGGTAGTTGACGG+CGG 0.677860 1_4:+43855114 None:intergenic
ACGACAACAGCATTCCGGTG+CGG 0.747692 1_4:+43855101 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTAATATAAATCAATT+AGG - chr1_4:43851582-43851601 Msa0164410:intron 10.0%
!! CTTAACAAAATTAATAAATA+AGG + chr1_4:43852405-43852424 None:intergenic 10.0%
!! CCTAATAAAATTAATAAATA+AGG + chr1_4:43852713-43852732 None:intergenic 10.0%
!!! CCTTATTTATTAATTTTATT+AGG - chr1_4:43852710-43852729 Msa0164410:intron 10.0%
!! TTTATAGTATTAAAAAATTC+TGG - chr1_4:43853631-43853650 Msa0164410:intron 10.0%
!!! TTCTAAAAAAATTAAAATTC+TGG + chr1_4:43853957-43853976 None:intergenic 10.0%
!! ATGAAAAAAATTGAAAAAAA+CGG + chr1_4:43854031-43854050 None:intergenic 10.0%
!! TTTAAAAAACAAAAAAATTC+TGG + chr1_4:43854164-43854183 None:intergenic 10.0%
!! GAAAAAATATTAAAAAATTC+TGG + chr1_4:43854212-43854231 None:intergenic 10.0%
!! ATAAAAAATTGAAAAAATTC+TGG + chr1_4:43854300-43854319 None:intergenic 10.0%
!! AAAAAAAAATGAAAAAATTC+TGG + chr1_4:43854369-43854388 None:intergenic 10.0%
!! AGAATAAAATATAAGTAAAA+CGG + chr1_4:43854966-43854985 None:intergenic 10.0%
!!! ATCATAATGATATTTTTTTA+AGG + chr1_4:43855011-43855030 None:intergenic 10.0%
!! TCAAATATTAGATTTAAATT+TGG - chr1_4:43855102-43855121 Msa0164410:CDS 10.0%
!! TTCTTATATTTATCAAAATA+GGG + chr1_4:43855137-43855156 None:intergenic 10.0%
!! TTTCTTATATTTATCAAAAT+AGG + chr1_4:43855138-43855157 None:intergenic 10.0%
!! ACATTAATTTACTCAATATA+TGG + chr1_4:43851727-43851746 None:intergenic 15.0%
!! AAAAATTAATGCAAGTATAA+AGG + chr1_4:43851932-43851951 None:intergenic 15.0%
!!! TTATACTTGCATTAATTTTT+CGG - chr1_4:43851932-43851951 Msa0164410:intron 15.0%
!! CAAAATATTGACAAAAAAAA+AGG + chr1_4:43852547-43852566 None:intergenic 15.0%
!! TACAAAATATTGTCAAAAAA+AGG + chr1_4:43852626-43852645 None:intergenic 15.0%
!! AAATTAATAAATAAGGATCA+GGG + chr1_4:43852706-43852725 None:intergenic 15.0%
!! AAAATTAATAAATAAGGATC+AGG + chr1_4:43852707-43852726 None:intergenic 15.0%
!!! CAAAATTTTTTTATAGCTTT+TGG - chr1_4:43853427-43853446 Msa0164410:intron 15.0%
!!! CAAATTTTTTTTATAGCTTT+TGG - chr1_4:43853488-43853507 Msa0164410:intron 15.0%
!! CTATAAAAAAAAAATTTGCA+TGG + chr1_4:43853547-43853566 None:intergenic 15.0%
!! AAAATTATAAAAGATTTGCA+GGG + chr1_4:43854406-43854425 None:intergenic 15.0%
!! AAAAATTATAAAAGATTTGC+AGG + chr1_4:43854405-43854424 None:intergenic 15.0%
!! TGAAAATAAAAATGAAATTC+TGG + chr1_4:43853921-43853940 None:intergenic 15.0%
!! AAAAATTATAAAAGATTTGC+AGG - chr1_4:43854405-43854424 Msa0164410:CDS 15.0%
!! AAAATTATAAAAGATTTGCA+GGG - chr1_4:43854406-43854425 Msa0164410:CDS 15.0%
!!! CAAATTTTTTTTATAGCATT+TGG + chr1_4:43854465-43854484 None:intergenic 15.0%
!!! CAAATTTTTTTTATAGCTTT+TGG + chr1_4:43853488-43853507 None:intergenic 15.0%
!!! ACTTATATTTTATTCTCATA+AGG - chr1_4:43854970-43854989 Msa0164410:intron 15.0%
!! AATCTAATATTTGACAAATT+AGG + chr1_4:43855096-43855115 None:intergenic 15.0%
!! TATATATTATGTTGAAAGTT+CGG + chr1_4:43855318-43855337 None:intergenic 15.0%
!!! TCTACATTAAATATTTTTTC+CGG - chr1_4:43855390-43855409 Msa0164410:intron 15.0%
!! AAAAATTAATGCAAGTATAA+AGG + chr1_4:43851932-43851951 None:intergenic 15.0%
!!! TTATACTTGCATTAATTTTT+CGG - chr1_4:43851932-43851951 Msa0164410:intron 15.0%
!! TATCTTCAAAATATTGTGAT+TGG + chr1_4:43851075-43851094 None:intergenic 20.0%
!!! TGATTTTTTTTTAATGCTTG+TGG - chr1_4:43851556-43851575 Msa0164410:intron 20.0%
!! TTTATTTATAGGATAACACT+TGG - chr1_4:43851826-43851845 Msa0164410:intron 20.0%
!!! TTTTTTAGATGGAATTTGTT+AGG + chr1_4:43852491-43852510 None:intergenic 20.0%
!!! CATTTTATATGGAATTTGTT+AGG + chr1_4:43852799-43852818 None:intergenic 20.0%
!!! AGCTATAAAAAAATTTTGCA+GGG + chr1_4:43853425-43853444 None:intergenic 20.0%
!!! AAGCTATAAAAAAATTTTGC+AGG + chr1_4:43853426-43853445 None:intergenic 20.0%
!! AGCTATAAAAAAAATTTGCA+GGG + chr1_4:43854528-43854547 None:intergenic 20.0%
!! AAGCTATAAAAAAAATTTGC+AGG + chr1_4:43854527-43854546 None:intergenic 20.0%
!!! TTAAAAATTCTGGAAAAGTT+CGG - chr1_4:43853757-43853776 Msa0164410:intron 20.0%
!! TATTTATAAACCGAGAATAA+GGG + chr1_4:43853815-43853834 None:intergenic 20.0%
!! TATAAATACACAAAAATTCC+CGG - chr1_4:43853827-43853846 Msa0164410:intron 20.0%
!!! AGTATTTCTCAAAAATTTTC+CGG + chr1_4:43853849-43853868 None:intergenic 20.0%
!! ATGCTATAAAAAAAATTTGC+AGG - chr1_4:43854466-43854485 Msa0164410:CDS 20.0%
!! TGCTATAAAAAAAATTTGCA+GGG - chr1_4:43854467-43854486 Msa0164410:CDS 20.0%
!! AAGCTATAAAAAAAATTTGC+AGG - chr1_4:43854527-43854546 Msa0164410:intron 20.0%
!! AGCTATAAAAAAAATTTGCA+GGG - chr1_4:43854528-43854547 Msa0164410:intron 20.0%
!! TAGATTTAAATTTGGCAAAT+TGG - chr1_4:43855110-43855129 Msa0164410:CDS 20.0%
!!! AGTCTTGGAGTTTTATTTTA+GGG + chr1_4:43850573-43850592 None:intergenic 25.0%
!!! AAGTCTTGGAGTTTTATTTT+AGG + chr1_4:43850574-43850593 None:intergenic 25.0%
! TTGTGAAATAAGAGAAAAGA+TGG + chr1_4:43850724-43850743 None:intergenic 25.0%
! TCACAATCTTCATCTAAATA+AGG - chr1_4:43850738-43850757 Msa0164410:intron 25.0%
! AATCTTCATCTAAATAAGGA+AGG - chr1_4:43850742-43850761 Msa0164410:intron 25.0%
! AGGAATCTAATTTCTAATTC+TGG - chr1_4:43850762-43850781 Msa0164410:intron 25.0%
! TTCACTCATATCTCATAATA+TGG - chr1_4:43850997-43851016 Msa0164410:intron 25.0%
! AATAAACAGTCTACATTCAA+AGG - chr1_4:43851362-43851381 Msa0164410:intron 25.0%
! TAAATCAATTAGGTTACTTG+TGG - chr1_4:43851592-43851611 Msa0164410:intron 25.0%
!!! GTATCTAAAACACTTTTAGT+CGG + chr1_4:43852100-43852119 None:intergenic 25.0%
!!! CATTTTATTTTTGAGCAGAT+TGG - chr1_4:43852193-43852212 Msa0164410:intron 25.0%
! CAAAAGGATATGAATGAAAT+TGG + chr1_4:43852524-43852543 None:intergenic 25.0%
! TTGACAAAAAAAAAGGCAAA+AGG + chr1_4:43852540-43852559 None:intergenic 25.0%
!!! CATTTTAGAGGGAAATTATT+AGG + chr1_4:43852751-43852770 None:intergenic 25.0%
!! AGGAATTGCTACATTTTATA+TGG + chr1_4:43852810-43852829 None:intergenic 25.0%
! GAAAAGTTAGGAGAAATATT+AGG + chr1_4:43852830-43852849 None:intergenic 25.0%
! ATTTGGATGAATGGATAAAA+GGG + chr1_4:43853081-43853100 None:intergenic 25.0%
! TATTTGGATGAATGGATAAA+AGG + chr1_4:43853082-43853101 None:intergenic 25.0%
! AATGGAAACATATATGACTA+TGG - chr1_4:43853268-43853287 Msa0164410:intron 25.0%
!!! CATATTTTTTCCCTTATTCT+CGG - chr1_4:43853802-43853821 Msa0164410:intron 25.0%
! GTATTTATAAACCGAGAATA+AGG + chr1_4:43853816-43853835 None:intergenic 25.0%
!! GTATTTCTCAAAAATTTTCC+GGG + chr1_4:43853848-43853867 None:intergenic 25.0%
! ATTCAAAACTTAGATTAGCA+AGG + chr1_4:43854646-43854665 None:intergenic 25.0%
! GAATACTTATCAAACACTTA+TGG - chr1_4:43854662-43854681 Msa0164410:intron 25.0%
! TTTATCATATTTGTGCAGAT+TGG - chr1_4:43855163-43855182 Msa0164410:CDS 25.0%
!! TTGATCACATTAATCTTTTC+CGG + chr1_4:43855412-43855431 None:intergenic 25.0%
! TTAAGAGATAGCATTATACA+AGG - chr1_4:43855472-43855491 Msa0164410:CDS 25.0%
! GTACATAAAACAAATCAAAG+TGG + chr1_4:43855625-43855644 None:intergenic 25.0%
!!! GTCTTGGAGTTTTATTTTAG+GGG + chr1_4:43850572-43850591 None:intergenic 30.0%
TCTTTCATGTTCATTTGGTT+AGG + chr1_4:43850629-43850648 None:intergenic 30.0%
CTCTTTCTTTCATGTTCATT+TGG + chr1_4:43850634-43850653 None:intergenic 30.0%
!! TGAGTTGATTGAATTAGTAG+AGG - chr1_4:43850973-43850992 Msa0164410:intron 30.0%
! GAGTTGATTGAATTAGTAGA+GGG - chr1_4:43850974-43850993 Msa0164410:intron 30.0%
CTCATAATATGGTCTAAACA+TGG - chr1_4:43851008-43851027 Msa0164410:intron 30.0%
TCCTAAATATAGAGAAGAAG+TGG + chr1_4:43851109-43851128 None:intergenic 30.0%
! TGTAGAAAGTGATAGTGAAA+GGG + chr1_4:43851141-43851160 None:intergenic 30.0%
! TTGTAGAAAGTGATAGTGAA+AGG + chr1_4:43851142-43851161 None:intergenic 30.0%
GAAGGATTGTAGTTTATGAA+AGG + chr1_4:43851168-43851187 None:intergenic 30.0%
! GCATAAACTACACAATTTTC+TGG + chr1_4:43851260-43851279 None:intergenic 30.0%
!!! AATTGTTTTTTTACCTTGCC+CGG + chr1_4:43851453-43851472 None:intergenic 30.0%
TAATTTCTTCCTCTTTGTTC+AGG - chr1_4:43851643-43851662 Msa0164410:intron 30.0%
TATAAAGGTCATAGAAGGAA+CGG + chr1_4:43851917-43851936 None:intergenic 30.0%
!! CTTGCATTAATTTTTCGGTA+AGG - chr1_4:43851937-43851956 Msa0164410:intron 30.0%
!! CGTGCTTGTTTCTATTATTA+CGG + chr1_4:43852041-43852060 None:intergenic 30.0%
ATTGGAACGTATGAAGATAA+AGG - chr1_4:43852211-43852230 Msa0164410:intron 30.0%
!! TTCCTCCAATTTGCTATATT+AGG - chr1_4:43852450-43852469 Msa0164410:intron 30.0%
AACCTAATATAGCAAATTGG+AGG + chr1_4:43852455-43852474 None:intergenic 30.0%
GCTAACCTAATATAGCAAAT+TGG + chr1_4:43852458-43852477 None:intergenic 30.0%
CAACAGGATAGGAATAAAAT+TGG + chr1_4:43852603-43852622 None:intergenic 30.0%
TATTGTCAAAAAAAGGCAAC+AGG + chr1_4:43852619-43852638 None:intergenic 30.0%
CGAGTTTGCATGAAAATTTA+GGG + chr1_4:43852679-43852698 None:intergenic 30.0%
! CCTAAATTTTCATGCAAACT+CGG - chr1_4:43852677-43852696 Msa0164410:intron 30.0%
ATGGATGAATATAAGATGCA+TGG + chr1_4:43853045-43853064 None:intergenic 30.0%
AAAGGGTTGTTATAGATAGA+TGG + chr1_4:43853064-43853083 None:intergenic 30.0%
!! TTTTGAAAGCCATTGGTATT+TGG + chr1_4:43853098-43853117 None:intergenic 30.0%
ACATACAACTTCATAAACGT+TGG + chr1_4:43853126-43853145 None:intergenic 30.0%
GTACAAGATTGAAAGAAGAT+AGG + chr1_4:43853151-43853170 None:intergenic 30.0%
!!! TCCATTTTGATTACCAAGAA+CGG + chr1_4:43853254-43853273 None:intergenic 30.0%
CAATAAGTTCACAAACTTAC+GGG + chr1_4:43853326-43853345 None:intergenic 30.0%
CCAATAAGTTCACAAACTTA+CGG + chr1_4:43853327-43853346 None:intergenic 30.0%
TTATTGGACTCATATCTTCA+AGG - chr1_4:43853340-43853359 Msa0164410:intron 30.0%
! TTGTGGCTTAAATATGGTTT+TGG - chr1_4:43853367-43853386 Msa0164410:intron 30.0%
!!! AAAACTGGCTTATTTTTGCA+GGG + chr1_4:43853454-43853473 None:intergenic 30.0%
!!! AAAACTGGTCTATTTTTGCA+GGG + chr1_4:43853515-43853534 None:intergenic 30.0%
!!! AAAACTGACCTATTTTTGCA+GGG - chr1_4:43854499-43854518 Msa0164410:intron 30.0%
! ACAAGGCTTAAATATGGTTT+TGG + chr1_4:43854586-43854605 None:intergenic 30.0%
ATTGAGACAAGGCTTAAATA+TGG + chr1_4:43854592-43854611 None:intergenic 30.0%
! TGTTTGTTGGTTAGTCAAAA+CGG + chr1_4:43854756-43854775 None:intergenic 30.0%
TCTGATCAAAGAGTGAAAAA+TGG - chr1_4:43854803-43854822 Msa0164410:intron 30.0%
! ATTGGAAGGCATGAAAATTA+AGG - chr1_4:43855181-43855200 Msa0164410:CDS 30.0%
! CAACATAAGTCTTTTTGGAT+CGG - chr1_4:43855361-43855380 Msa0164410:intron 30.0%
TATAAAGGTCATAGAAGGAA+CGG + chr1_4:43851917-43851936 None:intergenic 30.0%
TGCACAACATGATAAGAAGA+TGG - chr1_4:43850684-43850703 Msa0164410:intron 35.0%
AATTGTGCATAGCATAGTCA+CGG + chr1_4:43850812-43850831 None:intergenic 35.0%
CTGTGAACAATTTGGTACAA+TGG + chr1_4:43850902-43850921 None:intergenic 35.0%
CATTGTACCAAATTGTTCAC+AGG - chr1_4:43850900-43850919 Msa0164410:intron 35.0%
AAACAGACCTGTGAACAATT+TGG + chr1_4:43850910-43850929 None:intergenic 35.0%
TAAAACTACAACACAACCTC+TGG - chr1_4:43851046-43851065 Msa0164410:intron 35.0%
ATATTGTGATTGGTATCCAG+AGG + chr1_4:43851065-43851084 None:intergenic 35.0%
GCCACTTCTTCTCTATATTT+AGG - chr1_4:43851105-43851124 Msa0164410:intron 35.0%
! TTGATTTGATGTAACCAGCA+AGG - chr1_4:43851305-43851324 Msa0164410:intron 35.0%
CAAAAATGATCCTTCAACTG+TGG - chr1_4:43851401-43851420 Msa0164410:intron 35.0%
CGAAGGATTACTTTAATCTC+CGG - chr1_4:43851431-43851450 Msa0164410:intron 35.0%
GAAGGATTACTTTAATCTCC+GGG - chr1_4:43851432-43851451 Msa0164410:intron 35.0%
TCTAATGTTCCTGAACAAAG+AGG + chr1_4:43851655-43851674 None:intergenic 35.0%
GCAAGTATAAAGGTCATAGA+AGG + chr1_4:43851922-43851941 None:intergenic 35.0%
CGTATGAAGATAAAGGAGAT+TGG - chr1_4:43852218-43852237 Msa0164410:intron 35.0%
! TAGGGTCATTCACATTTTCA+GGG + chr1_4:43852355-43852374 None:intergenic 35.0%
!!! GTGCGATGCATTTTTTTAGA+TGG + chr1_4:43852502-43852521 None:intergenic 35.0%
TCAAAAAAAGGCAACAGGAT+AGG + chr1_4:43852614-43852633 None:intergenic 35.0%
CCGAGTTTGCATGAAAATTT+AGG + chr1_4:43852680-43852699 None:intergenic 35.0%
! ACCTAATGCAGCATTTTAGA+GGG + chr1_4:43852762-43852781 None:intergenic 35.0%
! AACCTAATGCAGCATTTTAG+AGG + chr1_4:43852763-43852782 None:intergenic 35.0%
CATGACAGGAATGAAAAGTT+AGG + chr1_4:43852842-43852861 None:intergenic 35.0%
TCCATTCATCCAAATACCAA+TGG - chr1_4:43853086-43853105 Msa0164410:intron 35.0%
!! GGAACATTTTTGAAAGCCAT+TGG + chr1_4:43853105-43853124 None:intergenic 35.0%
GTTTATTGTACCCTTGCAAA+TGG + chr1_4:43853215-43853234 None:intergenic 35.0%
! GAACGGTTTTACAATAAGCA+GGG + chr1_4:43853237-43853256 None:intergenic 35.0%
! AGAACGGTTTTACAATAAGC+AGG + chr1_4:43853238-43853257 None:intergenic 35.0%
GCTTATTGTAAAACCGTTCT+TGG - chr1_4:43853238-43853257 Msa0164410:intron 35.0%
! ACCGTTCTTGGTAATCAAAA+TGG - chr1_4:43853250-43853269 Msa0164410:intron 35.0%
CCGTAAGTTTGTGAACTTAT+TGG - chr1_4:43853324-43853343 Msa0164410:intron 35.0%
CATATCTTCAAGGTAGTTTG+TGG - chr1_4:43853350-43853369 Msa0164410:intron 35.0%
! GGTAGTTTGTGGCTTAAATA+TGG - chr1_4:43853361-43853380 Msa0164410:intron 35.0%
! CAAAACTGACCTATTTTGCA+GGG + chr1_4:43853394-43853413 None:intergenic 35.0%
!!! CAAAACTGGCTTATTTTTGC+AGG + chr1_4:43853455-43853474 None:intergenic 35.0%
! CTGCAAAAATAAGCCAGTTT+TGG - chr1_4:43853453-43853472 Msa0164410:intron 35.0%
!!! CAAAACTGGTCTATTTTTGC+AGG + chr1_4:43853516-43853535 None:intergenic 35.0%
! CTGCAAAAATAGACCAGTTT+TGG - chr1_4:43853514-43853533 Msa0164410:intron 35.0%
!! AAAACTGGCATAGTTTTGCA+GGG + chr1_4:43853578-43853597 None:intergenic 35.0%
!!! AAAACTGGCCTATTTTTGCA+GGG - chr1_4:43854438-43854457 Msa0164410:CDS 35.0%
! CTGCAAAAATAGGTCAGTTT+TGG + chr1_4:43854500-43854519 None:intergenic 35.0%
!!! CAAAACTGACCTATTTTTGC+AGG - chr1_4:43854498-43854517 Msa0164410:intron 35.0%
GAGGAAAGTCTCAAAATCTT+CGG + chr1_4:43854729-43854748 None:intergenic 35.0%
GACTAACCAACAAACATGTT+TGG - chr1_4:43854760-43854779 Msa0164410:intron 35.0%
AACCAACAAACATGTTTGGA+TGG - chr1_4:43854764-43854783 Msa0164410:intron 35.0%
TCATATTTGTGCAGATTGGA+AGG - chr1_4:43855167-43855186 Msa0164410:CDS 35.0%
GGCATGAAAATTAAGGAGAT+AGG - chr1_4:43855188-43855207 Msa0164410:CDS 35.0%
! CGCATCAACATAAGTCTTTT+TGG - chr1_4:43855356-43855375 Msa0164410:intron 35.0%
TTTATGTACATCAGCGTTGT+TGG - chr1_4:43855636-43855655 Msa0164410:five_prime_UTR 35.0%
GCAAGTATAAAGGTCATAGA+AGG + chr1_4:43851922-43851941 None:intergenic 35.0%
ATGCTATGCACAATTGCACA+TGG - chr1_4:43850817-43850836 Msa0164410:intron 40.0%
TATGCACAATTGCACATGGA+TGG - chr1_4:43850821-43850840 Msa0164410:intron 40.0%
!!! CAAATGTCCTTGGTGCTTTT+GGG + chr1_4:43850859-43850878 None:intergenic 40.0%
!!! ACAAATGTCCTTGGTGCTTT+TGG + chr1_4:43850860-43850879 None:intergenic 40.0%
CCTCATTTCATAATCCTTGC+TGG + chr1_4:43851322-43851341 None:intergenic 40.0%
CCAGCAAGGATTATGAAATG+AGG - chr1_4:43851319-43851338 Msa0164410:intron 40.0%
ACAGTCTACATTCAAAGGTG+AGG - chr1_4:43851367-43851386 Msa0164410:intron 40.0%
TCGAATCTTTCCACAGTTGA+AGG + chr1_4:43851414-43851433 None:intergenic 40.0%
TCAACTGTGGAAAGATTCGA+AGG - chr1_4:43851414-43851433 Msa0164410:intron 40.0%
ATTACTTTAATCTCCGGGCA+AGG - chr1_4:43851437-43851456 Msa0164410:intron 40.0%
TTAGACCCAAGATGACAGTT+CGG - chr1_4:43851670-43851689 Msa0164410:intron 40.0%
AATACCCGAACTGTCATCTT+GGG + chr1_4:43851678-43851697 None:intergenic 40.0%
AAATACCCGAACTGTCATCT+TGG + chr1_4:43851679-43851698 None:intergenic 40.0%
! ATGACAGTTCGGGTATTTTG+TGG - chr1_4:43851681-43851700 Msa0164410:intron 40.0%
TGGTCAATGCTTCTCTTTCT+TGG - chr1_4:43851846-43851865 Msa0164410:intron 40.0%
GGTCAATGCTTCTCTTTCTT+GGG - chr1_4:43851847-43851866 Msa0164410:intron 40.0%
GTCAATGCTTCTCTTTCTTG+GGG - chr1_4:43851848-43851867 Msa0164410:intron 40.0%
! AAGCTAACGTCAGCATCTTT+TGG - chr1_4:43851874-43851893 Msa0164410:intron 40.0%
ATTGGAACTATAGTCAGCCT+TGG - chr1_4:43852257-43852276 Msa0164410:intron 40.0%
TCATTAATAGTGCTCCTCCA+AGG + chr1_4:43852277-43852296 None:intergenic 40.0%
GACTTAGCAGCTTGAAGAAT+AGG + chr1_4:43852314-43852333 None:intergenic 40.0%
! CTAGGGTCATTCACATTTTC+AGG + chr1_4:43852356-43852375 None:intergenic 40.0%
GAAAATGTGAATGACCCTAG+TGG - chr1_4:43852356-43852375 Msa0164410:intron 40.0%
!! TCCCTCTAAAATGCTGCATT+AGG - chr1_4:43852758-43852777 Msa0164410:intron 40.0%
AAACGATGACACAACATGAC+AGG + chr1_4:43852856-43852875 None:intergenic 40.0%
GCCATTGGTATTTGGATGAA+TGG + chr1_4:43853090-43853109 None:intergenic 40.0%
TACCCTTGCAAATGGTTTCA+GGG + chr1_4:43853207-43853226 None:intergenic 40.0%
AAACTTACGGGATTGGGATA+AGG + chr1_4:43853314-43853333 None:intergenic 40.0%
GTTCACAAACTTACGGGATT+GGG + chr1_4:43853320-43853339 None:intergenic 40.0%
AGTTCACAAACTTACGGGAT+TGG + chr1_4:43853321-43853340 None:intergenic 40.0%
! CCAAAACTGACCTATTTTGC+AGG + chr1_4:43853395-43853414 None:intergenic 40.0%
! CCTGCAAAATAGGTCAGTTT+TGG - chr1_4:43853392-43853411 Msa0164410:intron 40.0%
! GCATGGACTAAAACCAAAAC+TGG + chr1_4:43853530-43853549 None:intergenic 40.0%
!! CAAAACTGGCATAGTTTTGC+AGG + chr1_4:43853579-43853598 None:intergenic 40.0%
! CTGCAAAAATAGGCCAGTTT+TGG + chr1_4:43854439-43854458 None:intergenic 40.0%
!!! CAAAACTGGCCTATTTTTGC+AGG - chr1_4:43854437-43854456 Msa0164410:CDS 40.0%
CATTTGGTCCCTGCAAAAAT+AGG + chr1_4:43854449-43854468 None:intergenic 40.0%
! CTTTTGGTCCCTGCAAAAAT+AGG + chr1_4:43853443-43853462 None:intergenic 40.0%
TGCAGGGACTAAAACCAAAA+CGG - chr1_4:43854422-43854441 Msa0164410:CDS 40.0%
GACCATCCAAACATGTTTGT+TGG + chr1_4:43854769-43854788 None:intergenic 40.0%
AGGTCAATGCTTCTCTTTCT+TGG - chr1_4:43855670-43855689 Msa0164410:five_prime_UTR 40.0%
GGTCAATGCTTCTCTTTCTT+GGG - chr1_4:43851847-43851866 Msa0164410:intron 40.0%
GTCAATGCTTCTCTTTCTTG+GGG - chr1_4:43851848-43851867 Msa0164410:intron 40.0%
! AAGCTAACGTCAGCATCTTT+TGG - chr1_4:43851874-43851893 Msa0164410:intron 40.0%
!! CGACTTAGGTGTTGAAGTCT+TGG + chr1_4:43850588-43850607 None:intergenic 45.0%
GCACCAAGGACATTTGTTCA+CGG - chr1_4:43850863-43850882 Msa0164410:intron 45.0%
AGACCGTGAACAAATGTCCT+TGG + chr1_4:43850869-43850888 None:intergenic 45.0%
TAGACCCAAGATGACAGTTC+GGG - chr1_4:43851671-43851690 Msa0164410:intron 45.0%
GGAAGTCAAGTGAAAGCGAT+TGG - chr1_4:43852239-43852258 Msa0164410:intron 45.0%
ATGACCCTAGTGGTTCACAT+TGG - chr1_4:43852366-43852385 Msa0164410:intron 45.0%
CACCCTGAAACCATTTGCAA+GGG - chr1_4:43853202-43853221 Msa0164410:intron 45.0%
GTACCCTTGCAAATGGTTTC+AGG + chr1_4:43853208-43853227 None:intergenic 45.0%
!! GGTTTTGGTCCCTGCAAAAT+AGG - chr1_4:43853382-43853401 Msa0164410:intron 45.0%
GCAGGGACTAAAACCAAAAC+TGG + chr1_4:43854423-43854442 None:intergenic 45.0%
GCAGGGACTAAAAGCAAAAC+TGG + chr1_4:43853593-43853612 None:intergenic 45.0%
GCAGGGACTAAAACCAAAAC+TGG - chr1_4:43854423-43854442 Msa0164410:CDS 45.0%
GCAGGGACTAAAACCAAAAC+GGG - chr1_4:43854423-43854442 Msa0164410:CDS 45.0%
! GCGAATTGTGGATTGAGACA+AGG + chr1_4:43854603-43854622 None:intergenic 45.0%
! ATCTTCAAGAGCGCGAATTG+TGG + chr1_4:43854615-43854634 None:intergenic 45.0%
ATGTACATCAGCGTTGTTGG+AGG - chr1_4:43855639-43855658 Msa0164410:five_prime_UTR 45.0%
!!! TTTTGTAATTATTTATTTAT+AGG - chr1_4:43851815-43851834 Msa0164410:intron 5.0%
!!! AGATTTTTTTTTTTTTTTTT+TGG - chr1_4:43852123-43852142 Msa0164410:intron 5.0%
!!! AATTTTTTTTTTATAGTTTT+TGG - chr1_4:43853551-43853570 Msa0164410:intron 5.0%
!! TAAAAAAATTTAAAAAATTC+TGG - chr1_4:43853670-43853689 Msa0164410:intron 5.0%
!! TAAAAAAAATTTAAAAATTC+TGG - chr1_4:43853747-43853766 Msa0164410:intron 5.0%
!! AAAAAAATATTAAAAAATTC+TGG + chr1_4:43854065-43854084 None:intergenic 5.0%
!! AAAAAAATATTAAAAAATTC+TGG + chr1_4:43854065-43854084 None:intergenic 5.0%
!! TAAAAAAATAAAAAAATTTC+TGG + chr1_4:43854261-43854280 None:intergenic 5.0%
!! TAAAAAAATTAAAAAAATTC+TGG + chr1_4:43854338-43854357 None:intergenic 5.0%
TTTCGCTTGTGGCTCGACTT+AGG + chr1_4:43850602-43850621 None:intergenic 50.0%
! GGTTAGGAGCTTTTCGCTTG+TGG + chr1_4:43850613-43850632 None:intergenic 50.0%
!! TGCCAAACCCAAAAGCACCA+AGG - chr1_4:43850849-43850868 Msa0164410:intron 50.0%
!!! GTCCTTGGTGCTTTTGGGTT+TGG + chr1_4:43850854-43850873 None:intergenic 50.0%
ACACGACGACAACAGCATTC+CGG + chr1_4:43851226-43851245 None:intergenic 50.0%
GGAACTATAGTCAGCCTTGG+AGG - chr1_4:43852260-43852279 Msa0164410:intron 50.0%
CGAGCCAATGTGAACCACTA+GGG + chr1_4:43852373-43852392 None:intergenic 50.0%
ACGAGCCAATGTGAACCACT+AGG + chr1_4:43852374-43852393 None:intergenic 50.0%
CCTTGCAAATGGTTTCAGGG+TGG + chr1_4:43853204-43853223 None:intergenic 50.0%
CCACCCTGAAACCATTTGCA+AGG - chr1_4:43853201-43853220 Msa0164410:intron 50.0%
! CAAAACGGGCCTCTTTTGCA+GGG - chr1_4:43854559-43854578 Msa0164410:intron 50.0%
!! GGTTTTGGTCCCTGCAAAAG+AGG + chr1_4:43854571-43854590 None:intergenic 50.0%
!!! GGTGCTTTTGGGTTTGGCAG+TGG + chr1_4:43850848-43850867 None:intergenic 55.0%
CATTCCGGTGCGGTAGTTGA+CGG + chr1_4:43851211-43851230 None:intergenic 55.0%
ACGACAACAGCATTCCGGTG+CGG + chr1_4:43851221-43851240 None:intergenic 55.0%
! CCTGCAAAAGAGGCCCGTTT+TGG + chr1_4:43854561-43854580 None:intergenic 55.0%
! CCAAAACGGGCCTCTTTTGC+AGG - chr1_4:43854558-43854577 Msa0164410:intron 55.0%
! GGTTAGTCAAAACGGCGCTG+AGG + chr1_4:43854748-43854767 None:intergenic 55.0%
CATCAGCGTTGTTGGAGGAG+TGG - chr1_4:43855644-43855663 Msa0164410:five_prime_UTR 55.0%
! GCAGACGTTGGTGCTTGCGA+AGG + chr1_4:43851186-43851205 None:intergenic 60.0%
TAGTTGACGGCGGCAGACGT+TGG + chr1_4:43851198-43851217 None:intergenic 60.0%
CAGCGTTGTTGGAGGAGTGG+TGG - chr1_4:43855647-43855666 Msa0164410:five_prime_UTR 60.0%
CGTTGTTGGAGGAGTGGTGG+AGG - chr1_4:43855650-43855669 Msa0164410:five_prime_UTR 60.0%
TCCGGTGCGGTAGTTGACGG+CGG + chr1_4:43851208-43851227 None:intergenic 65.0%
GCCGCCGTCAACTACCGCAC+CGG - chr1_4:43851204-43851223 Msa0164410:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 43850560 43855781 43850560 ID=Msa0164410;Name=Msa0164410
chr1_4 mRNA 43850560 43855781 43850560 ID=Msa0164410-mRNA-1;Parent=Msa0164410;Name=Msa0164410-mRNA-1;_AED=0.35;_eAED=0.35;_QI=276|0.25|0.6|1|0|0.4|5|0|188
chr1_4 exon 43850560 43850691 43850560 ID=Msa0164410-mRNA-1:exon:12549;Parent=Msa0164410-mRNA-1
chr1_4 exon 43854388 43854504 43854388 ID=Msa0164410-mRNA-1:exon:12548;Parent=Msa0164410-mRNA-1
chr1_4 exon 43854649 43854676 43854649 ID=Msa0164410-mRNA-1:exon:12547;Parent=Msa0164410-mRNA-1
chr1_4 exon 43855098 43855295 43855098 ID=Msa0164410-mRNA-1:exon:12546;Parent=Msa0164410-mRNA-1
chr1_4 exon 43855414 43855781 43855414 ID=Msa0164410-mRNA-1:exon:12545;Parent=Msa0164410-mRNA-1
chr1_4 five_prime_UTR 43855506 43855781 43855506 ID=Msa0164410-mRNA-1:five_prime_utr;Parent=Msa0164410-mRNA-1
chr1_4 CDS 43855414 43855505 43855414 ID=Msa0164410-mRNA-1:cds;Parent=Msa0164410-mRNA-1
chr1_4 CDS 43855098 43855295 43855098 ID=Msa0164410-mRNA-1:cds;Parent=Msa0164410-mRNA-1
chr1_4 CDS 43854649 43854676 43854649 ID=Msa0164410-mRNA-1:cds;Parent=Msa0164410-mRNA-1
chr1_4 CDS 43854388 43854504 43854388 ID=Msa0164410-mRNA-1:cds;Parent=Msa0164410-mRNA-1
chr1_4 CDS 43850560 43850691 43850560 ID=Msa0164410-mRNA-1:cds;Parent=Msa0164410-mRNA-1
Gene Sequence

>Msa0164410

ATGGATGGACCACTGCCAAACCCAAAAGCACCAAGGACATTTGTTCACGGTCTCGTTTTTTTGCCATTGTACCAAATTGTTCACAGGTCTGTTAAAACTACAACACAACCTCTGGATACCAATCACAATATTTTGAAGATAATATCTTTCAGCCACTTCTTCTCTATATTTAGGAGCTTAATGACCCTTTCACTATCACTTTCTACAATCACCTTTCATAAACTACAATCCTTCGCAAGCACCAACGTCTGCCGCCGTCAACTACCGCACCGGAATGCTGTTGTCGTCGTGAACATTAGACCCAAGATGACAGTTCGGGATAACACTTGGTCAATGCTTCTCTTTCTTGGGGATGAAGCTAACGTCAGCATCTTTTGGATCTGCTGTGATGAACTCCGTTCCTTCTATGACCTTTATACTTGCATTAATTTTTCGCGTTGTTGGAGGAGTGGTGGAGGTCAATGCTTCTCTTTCTTGGGGATGAAGCTAACGTCAGCATCTTTTGGATCTGCTGTGATGAACTCCGTTCCTTCTATGACCTTTATACTTGCATTAATTTTTCGGTAA

Protein sequence

>Msa0164410

MDGPLPNPKAPRTFVHGLVFLPLYQIVHRSVKTTTQPLDTNHNILKIISFSHFFSIFRSLMTLSLSLSTITFHKLQSFASTNVCRRQLPHRNAVVVVNIRPKMTVRDNTWSMLLFLGDEANVSIFWICCDELRSFYDLYTCINFSRCWRSGGGQCFSFLGMKLTSASFGSAVMNSVPSMTFILALIFR*