AlfalfaGEDB | Msa0022520

M. sativa cultivar zhongmu-4 / Msa0022520

KEGG: -
GO: -
PFAM: PF00892.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0022520	sp\|Q9SUF1\|WTR31_ARATH	53.521	71	33	0	224	294	91	161	3.56e-17	84.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0022520	Msa0118190	0.813036	3.136573e-51	-8.615850e-47
Msa0022520	Msa0164410	0.868725	5.274307e-66	-8.615850e-47
Msa0022520	Msa0664060	0.801722	7.873543e-49	-8.615850e-47
Msa0022520	Msa0906130	0.801930	7.136651e-49	-8.615850e-47

Showing 1 to 4 of 4 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0022520	MtrunA17_Chr1g0160181	80.556	72	14	0	224	295	97	168	6.47e-31	119
Msa0022520	MtrunA17_Chr1g0160181	82.857	35	6	0	94	128	97	131	3.87e-11	63.2
Msa0022520	MtrunA17_Chr1g0177221	55.118	127	26	2	168	294	72	167	1.36e-30	115
Msa0022520	MtrunA17_Chr1g0177221	47.253	91	17	2	38	128	72	131	3.16e-12	65.5
Msa0022520	MtrunA17_Chr3g0114701	45.139	144	37	3	160	292	44	156	7.70e-24	100
Msa0022520	MtrunA17_Chr3g0114731	68.116	69	22	0	224	292	97	165	1.86e-23	99.0
Msa0022520	MtrunA17_Chr3g0114711	65.217	69	24	0	224	292	93	161	2.40e-22	95.9
Msa0022520	MtrunA17_Chr5g0413961	50.725	69	34	0	224	292	92	160	7.30e-16	77.0
Msa0022520	MtrunA17_Chr1g0182291	52.113	71	34	0	224	294	94	164	8.76e-16	76.6
Msa0022520	MtrunA17_Chr1g0160171	52.239	67	32	0	229	295	100	166	4.44e-15	74.7

Showing 1 to 10 of 27 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0022520	AT4G08290.2	53.521	71	33	224	294	91	161	1.09e-18	84.3
Msa0022520	AT4G08290.1	53.521	71	33	224	294	91	161	3.62e-18	84.3
Msa0022520	AT1G21890.2	47.222	72	38	224	295	89	160	2.48e-15	75.9
Msa0022520	AT1G21890.1	47.222	72	38	224	295	89	160	2.73e-15	75.9
Msa0022520	AT1G44800.1	45.833	72	39	224	295	89	160	4.77e-15	75.1
Msa0022520	AT2G40900.1	45.833	72	39	224	295	89	160	5.77e-15	75.1
Msa0022520	AT4G08300.1	44.444	72	40	224	295	89	160	1.69e-14	73.6
Msa0022520	AT2G39510.1	47.887	71	37	224	294	86	156	2.15e-14	73.2
Msa0022520	AT5G07050.1	44.444	72	40	224	295	96	167	2.38e-14	73.2
Msa0022520	AT2G37460.1	45.833	72	39	224	295	93	164	2.43e-13	70.1

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

Find 117 sgRNAs with CRISPR-Local

Find 608 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACATCACCACCTAAGA+CGG	0.580488	1_1:+42311913	Msa0022520:five_prime_UTR
AAACAGACCTGTGAACAATT+TGG	0.334036	1_1:-42312349	None:intergenic
AAATACCCGAACTGTCATCT+TGG	0.440634	1_1:-42313119	None:intergenic
AAATACCCGAACTGTCATCT+TGG	0.440634	1_1:-42321106	None:intergenic
AAGCTAACGTCAGCATCTTT+TGG	0.286395	1_1:+42313317	Msa0022520:CDS
AAGCTAACGTCAGCATCTTT+TGG	0.286395	1_1:+42315874	Msa0022520:CDS
AAGCTAACGTCAGCATCTTT+TGG	0.286395	1_1:+42321304	Msa0022520:CDS
AAGCTAACGTCAGCATCTTT+TGG	0.286395	1_1:+42323855	Msa0022520:CDS
AATACCCGAACTGTCATCTT+GGG	0.523300	1_1:-42313118	None:intergenic
AATACCCGAACTGTCATCTT+GGG	0.523300	1_1:-42321105	None:intergenic

Showing 1 to 10 of 117 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCTTTCATGTTCATTTGGTT+AGG	-	chr1_1:42312070-42312089	None:intergenic	30.0%
CTCTTTCTTTCATGTTCATT+TGG	-	chr1_1:42312075-42312094	None:intergenic	30.0%
CTCATAATATGGTCTAAACA+TGG	+	chr1_1:42312450-42312469	Msa0022520:five_prime_UTR	30.0%
TCCTAAATATAGAGAAGAAG+TGG	-	chr1_1:42312551-42312570	None:intergenic	30.0%
GAAGGATTGTAGTTTATGAA+AGG	-	chr1_1:42312610-42312629	None:intergenic	30.0%
TAATTTCTTCCTCTTTGTTC+AGG	+	chr1_1:42313086-42313105	Msa0022520:intron	30.0%
TATAAAGGTCATAGAAGGAA+CGG	-	chr1_1:42313360-42313379	None:intergenic	30.0%
ATTGGAACGTATGAAGATAA+AGG	+	chr1_1:42313617-42313636	Msa0022520:intron	30.0%
AACCTAATATAGCAAATTGG+AGG	-	chr1_1:42313861-42313880	None:intergenic	30.0%
GCTAACCTAATATAGCAAAT+TGG	-	chr1_1:42313864-42313883	None:intergenic	30.0%

Showing 1 to 10 of 608 entries

Previous1 2 3 4 5…61Next

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	42311833	42324457	42311833	ID=Msa0022520;Name=Msa0022520
chr1_1	mRNA	42311833	42324457	42311833	ID=Msa0022520-mRNA-1;Parent=Msa0022520;Name=Msa0022520-mRNA-1;_AED=0.32;_eAED=0.32;_QI=743\|0.12\|0.66\|1\|0.37\|0.88\|9\|181\|297
chr1_1	exon	42311833	42312685	42311833	ID=Msa0022520-mRNA-1:exon:12389;Parent=Msa0022520-mRNA-1
chr1_1	exon	42313108	42313135	42313108	ID=Msa0022520-mRNA-1:exon:12390;Parent=Msa0022520-mRNA-1
chr1_1	exon	42313280	42313396	42313280	ID=Msa0022520-mRNA-1:exon:12391;Parent=Msa0022520-mRNA-1
chr1_1	exon	42315826	42315953	42315826	ID=Msa0022520-mRNA-1:exon:12392;Parent=Msa0022520-mRNA-1
chr1_1	exon	42320557	42320673	42320557	ID=Msa0022520-mRNA-1:exon:12393;Parent=Msa0022520-mRNA-1
chr1_1	exon	42321095	42321122	42321095	ID=Msa0022520-mRNA-1:exon:12394;Parent=Msa0022520-mRNA-1
chr1_1	exon	42321267	42321383	42321267	ID=Msa0022520-mRNA-1:exon:12395;Parent=Msa0022520-mRNA-1
chr1_1	exon	42323807	42323934	42323807	ID=Msa0022520-mRNA-1:exon:12396;Parent=Msa0022520-mRNA-1
chr1_1	exon	42324156	42324457	42324156	ID=Msa0022520-mRNA-1:exon:12397;Parent=Msa0022520-mRNA-1
chr1_1	five_prime_UTR	42311833	42312575	42311833	ID=Msa0022520-mRNA-1:five_prime_utr;Parent=Msa0022520-mRNA-1
chr1_1	CDS	42312576	42312685	42312576	ID=Msa0022520-mRNA-1:cds;Parent=Msa0022520-mRNA-1
chr1_1	CDS	42313108	42313135	42313108	ID=Msa0022520-mRNA-1:cds;Parent=Msa0022520-mRNA-1
chr1_1	CDS	42313280	42313396	42313280	ID=Msa0022520-mRNA-1:cds;Parent=Msa0022520-mRNA-1
chr1_1	CDS	42315826	42315953	42315826	ID=Msa0022520-mRNA-1:cds;Parent=Msa0022520-mRNA-1
chr1_1	CDS	42320557	42320673	42320557	ID=Msa0022520-mRNA-1:cds;Parent=Msa0022520-mRNA-1
chr1_1	CDS	42321095	42321122	42321095	ID=Msa0022520-mRNA-1:cds;Parent=Msa0022520-mRNA-1
chr1_1	CDS	42321267	42321383	42321267	ID=Msa0022520-mRNA-1:cds;Parent=Msa0022520-mRNA-1
chr1_1	CDS	42323807	42323934	42323807	ID=Msa0022520-mRNA-1:cds;Parent=Msa0022520-mRNA-1
chr1_1	CDS	42324156	42324276	42324156	ID=Msa0022520-mRNA-1:cds;Parent=Msa0022520-mRNA-1
chr1_1	three_prime_UTR	42324277	42324457	42324277	ID=Msa0022520-mRNA-1:three_prime_utr;Parent=Msa0022520-mRNA-1

Gene Sequence

>Msa0022520

ATGACCCTTTCACTATCACTTTCTACAATCACCTTTCATAAACTACAATCCTTCGCAAGCACCAACGTCTGCCGCCGTCAACTACCGCACCGGAATGCTGTTGTCGTCGTGAACATTAGACCCAAGATGACAGTTCGGGATAACACTTGGTCAATGCTTCTCTTTCTTGGGGATGAAGCTAACGTCAGCATCTTTTGGATCTGCTGTGATGAACTCCGTTCCTTCTATGACCTTTATACTTGCATTAATTTTTCGCATTGTTGGAGGAGTGGTGGTGGTCAATGCTTCTCTTTCTTGGGGATGAAGCTAACGTCAGCATCTTTTGGATCTGCTGTGATGAGCTCCGTTCCTTCTATGACCTTTATACTTGCATTAATTTTTCGGAGCTTAATGACCCTTTCACTATCACTTTCTACAATCACCTTTCATAAACTACAATCCTTCGCAAGCACCAACGTCTGCCGCCGTCAACTACCGCACCGGAATGCTGTTGTCGTCGTGAACATTAGACCCAAGATGACAGTTCGGGATAACACTTGGTCAATGCTTCTCTTTCTTGGGGATGAAGCTAACGTCAGCATCTTTTGGATCTGCTGTGATGAACTCCGTTCCTTCTATGACCTTTATACATGCATTAATTTTTCGCATTGTTGGAGGAGTGGTGGTGGTCAATGCTTCTCTTTCTTGGGGATGAAGCTAACGTCAGCATCTTTTGGATCTGCTGTGATGAGCTCCGTTCCTTCTATGACCTTTATACTTGCATTAATTTTTCGCTTGGAACGTATGAAGATAAAGGAGATTGGAAGTCAAGTGAAAGCGATTGGAACTATAGTCAGCCTTGAAGGAGCACTATTAATGATACTCTACAAAGGTCCTTTTCTTCAAGCTTGCTAA

Protein sequence

>Msa0022520

MTLSLSLSTITFHKLQSFASTNVCRRQLPHRNAVVVVNIRPKMTVRDNTWSMLLFLGDEANVSIFWICCDELRSFYDLYTCINFSHCWRSGGGQCFSFLGMKLTSASFGSAVMSSVPSMTFILALIFRSLMTLSLSLSTITFHKLQSFASTNVCRRQLPHRNAVVVVNIRPKMTVRDNTWSMLLFLGDEANVSIFWICCDELRSFYDLYTCINFSHCWRSGGGQCFSFLGMKLTSASFGSAVMSSVPSMTFILALIFRLERMKIKEIGSQVKAIGTIVSLEGALLMILYKGPFLQAC*