Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118190 | A0A396JMD1 | 47.826 | 92 | 17 | 2 | 18 | 109 | 71 | 131 | 1.96e-11 | 68.9 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022520 | Msa0118190 | 0.813036 | 3.136573e-51 | -8.615850e-47 |
| Msa0118190 | Msa0164410 | 0.834914 | 2.274717e-56 | -8.615850e-47 |
| Msa0118190 | Msa1374550 | 0.810014 | 1.422714e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118190 | MtrunA17_Chr1g0177221 | 47.826 | 92 | 17 | 2 | 18 | 109 | 71 | 131 | 3.78e-15 | 68.9 |
| Msa0118190 | MtrunA17_Chr1g0160181 | 82.857 | 35 | 6 | 0 | 75 | 109 | 97 | 131 | 1.77e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCACTTCTTCTCTATATTT+AGG | 0.189515 | 1_3:+40462858 | Msa0118190:five_prime_UTR |
| ATTATTAACTTCATTCAATA+AGG | 0.195450 | 1_3:-40462323 | None:intergenic |
| TGGTCAATGCTTCTCTTTCT+TGG | 0.207912 | 1_3:+40466149 | Msa0118190:CDS |
| TGGTCAATGCTTCTCTTTCT+TGG | 0.212191 | 1_3:+40463599 | Msa0118190:CDS |
| ACAAATGTCCTTGGTGCTTT+TGG | 0.217684 | 1_3:-40462610 | None:intergenic |
| GGTCAATGCTTCTCTTTCTT+GGG | 0.240657 | 1_3:+40463600 | Msa0118190:CDS |
| GGGAATCTAATTTCTAATTC+TGG | 0.242151 | 1_3:+40462515 | Msa0118190:five_prime_UTR |
| GGTCAATGCTTCTCTTTCTT+GGG | 0.242702 | 1_3:+40466150 | Msa0118190:CDS |
| TCACAATCTTCATCTAAATA+AGG | 0.269539 | 1_3:+40462490 | Msa0118190:five_prime_UTR |
| AAGCTAACGTCAGCATCTTT+TGG | 0.286395 | 1_3:+40463627 | Msa0118190:CDS |
| AAGCTAACGTCAGCATCTTT+TGG | 0.286395 | 1_3:+40466177 | Msa0118190:CDS |
| AACTTTCAAGTGATAGATAA+TGG | 0.317263 | 1_3:+40462349 | Msa0118190:five_prime_UTR |
| AAACAGACCTGTGAACAATT+TGG | 0.334036 | 1_3:-40462660 | None:intergenic |
| TATCTTCAAAATATTGTGAT+TGG | 0.369162 | 1_3:-40462825 | None:intergenic |
| TCGAATCTTTCCACAGTTGA+AGG | 0.378798 | 1_3:-40463164 | None:intergenic |
| TTATTAACTTCATTCAATAA+GGG | 0.410100 | 1_3:-40462322 | None:intergenic |
| CGAAGGATTACTTTAATCTC+CGG | 0.418687 | 1_3:+40463184 | Msa0118190:CDS |
| TTTATGTACATCAGCATTGT+TGG | 0.425034 | 1_3:+40466115 | Msa0118190:intron |
| GCAAGTATAAAGGTCATAGA+AGG | 0.429411 | 1_3:-40463672 | None:intergenic |
| GCAAGTATAAAGGTCATAGA+AGG | 0.429411 | 1_3:-40466222 | None:intergenic |
| AAATACCCGAACTGTCATCT+TGG | 0.440634 | 1_3:-40463429 | None:intergenic |
| TAAAACTACAACACAACCTC+TGG | 0.461699 | 1_3:+40462799 | Msa0118190:five_prime_UTR |
| ACACGACGACAACAGCATTC+CGG | 0.465397 | 1_3:-40462976 | None:intergenic |
| GTCAATGCTTCTCTTTCTTG+GGG | 0.468477 | 1_3:+40463601 | Msa0118190:CDS |
| GTCAATGCTTCTCTTTCTTG+GGG | 0.468477 | 1_3:+40466151 | Msa0118190:CDS |
| CATTGTACCAAATTGTTCAC+AGG | 0.496006 | 1_3:+40462653 | Msa0118190:five_prime_UTR |
| TAGACCCAAGATGACAGTTC+GGG | 0.506379 | 1_3:+40463424 | Msa0118190:CDS |
| TTGTGAAATAAGAGAAAAGA+TGG | 0.509291 | 1_3:-40462473 | None:intergenic |
| AATAAACAGTCTACATTCAA+AGG | 0.515333 | 1_3:+40463115 | Msa0118190:five_prime_UTR |
| AATACCCGAACTGTCATCTT+GGG | 0.523300 | 1_3:-40463428 | None:intergenic |
| AATCTTCATCTAAATAAGGA+AGG | 0.532523 | 1_3:+40462494 | Msa0118190:five_prime_UTR |
| TTAGACCCAAGATGACAGTT+CGG | 0.532977 | 1_3:+40463423 | Msa0118190:CDS |
| GAAGGATTGTAGTTTATGAA+AGG | 0.536578 | 1_3:-40462918 | None:intergenic |
| TCCTAAATATAGAGAAGAAG+TGG | 0.540737 | 1_3:-40462859 | None:intergenic |
| TTGTAGAAAGTGATAGTGAA+AGG | 0.541732 | 1_3:-40462892 | None:intergenic |
| ATGTACATCAGCATTGTTGG+AGG | 0.542794 | 1_3:+40466118 | Msa0118190:intron |
| CATTGTTGGAGGAGTGGTGG+TGG | 0.549329 | 1_3:+40466129 | Msa0118190:CDS |
| TGTAGAAAGTGATAGTGAAA+GGG | 0.550270 | 1_3:-40462891 | None:intergenic |
| GAAGGATTACTTTAATCTCC+GGG | 0.562945 | 1_3:+40463185 | Msa0118190:CDS |
| AGACCGTGAACAAATGTCCT+TGG | 0.564640 | 1_3:-40462619 | None:intergenic |
| ATTACTTTAATCTCCGGGCA+AGG | 0.570687 | 1_3:+40463190 | Msa0118190:CDS |
| TATAAAGGTCATAGAAGGAA+CGG | 0.579409 | 1_3:-40463667 | None:intergenic |
| TATAAAGGTCATAGAAGGAA+CGG | 0.579409 | 1_3:-40466217 | None:intergenic |
| GCAGACGTTGGTGCTTGCGA+AGG | 0.579940 | 1_3:-40462936 | None:intergenic |
| GCACCAAGGACATTTGTTCA+CGG | 0.580615 | 1_3:+40462616 | Msa0118190:five_prime_UTR |
| TGCACAACATGATAAGAAGA+TGG | 0.587404 | 1_3:+40462436 | Msa0118190:five_prime_UTR |
| TCAACTGTGGAAAGATTCGA+AGG | 0.587545 | 1_3:+40463167 | Msa0118190:CDS |
| GCCGTCGTCAACTACCGCAC+CGG | 0.593698 | 1_3:+40462957 | Msa0118190:five_prime_UTR |
| TTTATTTATAGGATAACACT+TGG | 0.596420 | 1_3:+40463579 | Msa0118190:intron |
| CCAGCAAGGATTATGAAATG+AGG | 0.604111 | 1_3:+40463072 | Msa0118190:intron |
| CTGTGAACAATTTGGTACAA+TGG | 0.605661 | 1_3:-40462652 | None:intergenic |
| ATCTTCATCTAAATAAGGAA+GGG | 0.611315 | 1_3:+40462495 | Msa0118190:five_prime_UTR |
| CATCAGCATTGTTGGAGGAG+TGG | 0.613229 | 1_3:+40466123 | Msa0118190:intron |
| ACAGTCTACATTCAAAGGTG+AGG | 0.630808 | 1_3:+40463120 | Msa0118190:five_prime_UTR |
| TATGCACAATTGCACATGGA+TGG | 0.639732 | 1_3:+40462574 | Msa0118190:five_prime_UTR |
| CAGCATTGTTGGAGGAGTGG+TGG | 0.646899 | 1_3:+40466126 | Msa0118190:intron |
| AATTGTGCATAGCATAGTCA+CGG | 0.655371 | 1_3:-40462562 | None:intergenic |
| ATATTGTGATTGGTATCCAG+AGG | 0.656570 | 1_3:-40462815 | None:intergenic |
| TGCCAAACCCAAAAGCACCA+AGG | 0.661034 | 1_3:+40462602 | Msa0118190:five_prime_UTR |
| ATGCTATGCACAATTGCACA+TGG | 0.666530 | 1_3:+40462570 | Msa0118190:five_prime_UTR |
| TCCGGTGCGGTAGTTGACGA+CGG | 0.677621 | 1_3:-40462958 | None:intergenic |
| TAGTTGACGACGGCAGACGT+TGG | 0.699717 | 1_3:-40462948 | None:intergenic |
| ACGACAACAGCATTCCGGTG+CGG | 0.747692 | 1_3:-40462971 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTAATATAAATCAATT+AGG | + | chr1_3:40463335-40463354 | Msa0118190:intron | 10.0% |
| !! | CTTAACAAAATTAATAAATA+AGG | - | chr1_3:40464121-40464140 | None:intergenic | 10.0% |
| !! | AAATTAATAAATAAGGATTA+GGG | - | chr1_3:40464420-40464439 | None:intergenic | 10.0% |
| !! | AAAATTAATAAATAAGGATT+AGG | - | chr1_3:40464421-40464440 | None:intergenic | 10.0% |
| !! | CCTAATAAAATTAATAAATA+AGG | - | chr1_3:40464427-40464446 | None:intergenic | 10.0% |
| !!! | CCTTATTTATTAATTTTATT+AGG | + | chr1_3:40464424-40464443 | Msa0118190:intron | 10.0% |
| !! | AGAATAAAATATAAGTAAAA+CGG | - | chr1_3:40465446-40465465 | None:intergenic | 10.0% |
| !!! | ATCATAATGATATTTTTTTA+AGG | - | chr1_3:40465491-40465510 | None:intergenic | 10.0% |
| !! | TCAAATATTAGATTTAAATT+TGG | + | chr1_3:40465582-40465601 | Msa0118190:intron | 10.0% |
| !! | TTCTTATATTTATCAAAATA+GGG | - | chr1_3:40465617-40465636 | None:intergenic | 10.0% |
| !! | TTTCTTATATTTATCAAAAT+AGG | - | chr1_3:40465618-40465637 | None:intergenic | 10.0% |
| !! | TTATTAACTTCATTCAATAA+GGG | - | chr1_3:40462325-40462344 | None:intergenic | 15.0% |
| !! | ATTATTAACTTCATTCAATA+AGG | - | chr1_3:40462326-40462345 | None:intergenic | 15.0% |
| !! | ACATTAATTTACTCAATATA+TGG | - | chr1_3:40463480-40463499 | None:intergenic | 15.0% |
| !! | AAAAATTAATGCAAGTATAA+AGG | - | chr1_3:40463685-40463704 | None:intergenic | 15.0% |
| !!! | TTATACTTGCATTAATTTTT+CGG | + | chr1_3:40463685-40463704 | Msa0118190:CDS | 15.0% |
| !! | TACAAAATATTGACAAAAAA+AGG | - | chr1_3:40464263-40464282 | None:intergenic | 15.0% |
| !! | TACAAAATATTGTCAAAAAA+AGG | - | chr1_3:40464340-40464359 | None:intergenic | 15.0% |
| !!! | ACTTATATTTTATTCTCATA+AGG | + | chr1_3:40465450-40465469 | Msa0118190:intron | 15.0% |
| !! | AATCTAATATTTGACAAATT+AGG | - | chr1_3:40465576-40465595 | None:intergenic | 15.0% |
| !! | TATATATTATGTTGAAAGTT+CGG | - | chr1_3:40465798-40465817 | None:intergenic | 15.0% |
| !!! | TCTACATTAAATATTTTTTC+CGG | + | chr1_3:40465870-40465889 | Msa0118190:intron | 15.0% |
| !!! | TCATTAAAATCAAACATTTT+TGG | + | chr1_3:40466055-40466074 | Msa0118190:intron | 15.0% |
| !! | AAAAATTAATGCAAGTATAA+AGG | - | chr1_3:40463685-40463704 | None:intergenic | 15.0% |
| !!! | TTATACTTGCATTAATTTTT+CGG | + | chr1_3:40463685-40463704 | Msa0118190:CDS | 15.0% |
| !! | TATCTTCAAAATATTGTGAT+TGG | - | chr1_3:40462828-40462847 | None:intergenic | 20.0% |
| !!! | TGATTTTTTTTTAATGCTTG+TGG | + | chr1_3:40463309-40463328 | Msa0118190:intron | 20.0% |
| !! | TTTATTTATAGGATAACACT+TGG | + | chr1_3:40463579-40463598 | Msa0118190:intron | 20.0% |
| !!! | TTTTTTAGATGGAATTTGTT+AGG | - | chr1_3:40464207-40464226 | None:intergenic | 20.0% |
| !!! | CATTTTATATGGAATTTGTT+AGG | - | chr1_3:40464513-40464532 | None:intergenic | 20.0% |
| !! | TAGATTTAAATTTGGCAAAT+TGG | + | chr1_3:40465590-40465609 | Msa0118190:intron | 20.0% |
| !! | TGTACATAAAACAAAATAAG+TGG | - | chr1_3:40466105-40466124 | None:intergenic | 20.0% |
| !! | AACTTTCAAGTGATAGATAA+TGG | + | chr1_3:40462349-40462368 | Msa0118190:five_prime_UTR | 25.0% |
| ! | TTGTGAAATAAGAGAAAAGA+TGG | - | chr1_3:40462476-40462495 | None:intergenic | 25.0% |
| ! | TCACAATCTTCATCTAAATA+AGG | + | chr1_3:40462490-40462509 | Msa0118190:five_prime_UTR | 25.0% |
| ! | AATCTTCATCTAAATAAGGA+AGG | + | chr1_3:40462494-40462513 | Msa0118190:five_prime_UTR | 25.0% |
| ! | ATCTTCATCTAAATAAGGAA+GGG | + | chr1_3:40462495-40462514 | Msa0118190:five_prime_UTR | 25.0% |
| ! | TTCACTCATATCTCATAATA+TGG | + | chr1_3:40462750-40462769 | Msa0118190:intron | 25.0% |
| ! | AATAAACAGTCTACATTCAA+AGG | + | chr1_3:40463115-40463134 | Msa0118190:five_prime_UTR | 25.0% |
| ! | TAAATCAATTAGGTTACTTG+TGG | + | chr1_3:40463345-40463364 | Msa0118190:intron | 25.0% |
| !!! | GTATCTAAAACACTTTTAGT+CGG | - | chr1_3:40463852-40463871 | None:intergenic | 25.0% |
| !!! | CATTTTATTTTTGAGCAGAT+TGG | + | chr1_3:40463909-40463928 | Msa0118190:intron | 25.0% |
| ! | CAAAAGGATATGAATGAAAT+TGG | - | chr1_3:40464240-40464259 | None:intergenic | 25.0% |
| ! | TATTGACAAAAAAAGGCAAA+AGG | - | chr1_3:40464256-40464275 | None:intergenic | 25.0% |
| !!! | CATTTTAGAGGGAAATTATT+AGG | - | chr1_3:40464465-40464484 | None:intergenic | 25.0% |
| !! | AGGAATTGCTACATTTTATA+TGG | - | chr1_3:40464524-40464543 | None:intergenic | 25.0% |
| ! | GAAAAGTTAGGAGAAATATT+AGG | - | chr1_3:40464544-40464563 | None:intergenic | 25.0% |
| ! | ATTTGGATGAATGGATAAAA+GGG | - | chr1_3:40464791-40464810 | None:intergenic | 25.0% |
| ! | TATTTGGATGAATGGATAAA+AGG | - | chr1_3:40464792-40464811 | None:intergenic | 25.0% |
| ! | AATGGAAACATATATGACTA+TGG | + | chr1_3:40464977-40464996 | Msa0118190:intron | 25.0% |
| ! | ATTCAAAACTTAGATTAGCA+AGG | - | chr1_3:40465126-40465145 | None:intergenic | 25.0% |
| ! | GAATACTTATCAAACACTTA+TGG | + | chr1_3:40465142-40465161 | Msa0118190:intron | 25.0% |
| ! | TTTATCATATTTGTGCAGAT+TGG | + | chr1_3:40465643-40465662 | Msa0118190:intron | 25.0% |
| !! | TTGATCACATTAATCTTTTC+CGG | - | chr1_3:40465892-40465911 | None:intergenic | 25.0% |
| ! | TTAAGAGATAGCATTATACA+AGG | + | chr1_3:40465952-40465971 | Msa0118190:intron | 25.0% |
| GGGAATCTAATTTCTAATTC+TGG | + | chr1_3:40462515-40462534 | Msa0118190:five_prime_UTR | 30.0% | |
| !! | TGAGTTGATTGAATTAGTAG+AGG | + | chr1_3:40462726-40462745 | Msa0118190:intron | 30.0% |
| ! | GAGTTGATTGAATTAGTAGA+GGG | + | chr1_3:40462727-40462746 | Msa0118190:intron | 30.0% |
| CTCATAATATGGTCTAAACA+TGG | + | chr1_3:40462761-40462780 | Msa0118190:intron | 30.0% | |
| TCCTAAATATAGAGAAGAAG+TGG | - | chr1_3:40462862-40462881 | None:intergenic | 30.0% | |
| ! | TGTAGAAAGTGATAGTGAAA+GGG | - | chr1_3:40462894-40462913 | None:intergenic | 30.0% |
| ! | TTGTAGAAAGTGATAGTGAA+AGG | - | chr1_3:40462895-40462914 | None:intergenic | 30.0% |
| GAAGGATTGTAGTTTATGAA+AGG | - | chr1_3:40462921-40462940 | None:intergenic | 30.0% | |
| ! | GCATAAACTACACAATTTTC+TGG | - | chr1_3:40463013-40463032 | None:intergenic | 30.0% |
| !!! | AATTGTTTTTTTACCTTGCC+CGG | - | chr1_3:40463206-40463225 | None:intergenic | 30.0% |
| TAATTTCTTCCTCTTTGTTC+AGG | + | chr1_3:40463396-40463415 | Msa0118190:intron | 30.0% | |
| TATAAAGGTCATAGAAGGAA+CGG | - | chr1_3:40463670-40463689 | None:intergenic | 30.0% | |
| !! | CTTGCATTAATTTTTCGGTA+AGG | + | chr1_3:40463690-40463709 | Msa0118190:intron | 30.0% |
| !! | CGTGCTTGTTTCTATTATTA+CGG | - | chr1_3:40463794-40463813 | None:intergenic | 30.0% |
| ATTGGAACGTATGAAGATAA+AGG | + | chr1_3:40463927-40463946 | Msa0118190:intron | 30.0% | |
| !! | TTCCTCCAATTTGCTATATT+AGG | + | chr1_3:40464166-40464185 | Msa0118190:intron | 30.0% |
| AACCTAATATAGCAAATTGG+AGG | - | chr1_3:40464171-40464190 | None:intergenic | 30.0% | |
| GCTAACCTAATATAGCAAAT+TGG | - | chr1_3:40464174-40464193 | None:intergenic | 30.0% | |
| CAACAGGATAGGAATAAAAT+TGG | - | chr1_3:40464317-40464336 | None:intergenic | 30.0% | |
| TATTGTCAAAAAAAGGCAAC+AGG | - | chr1_3:40464333-40464352 | None:intergenic | 30.0% | |
| CGAGTTTGCATGAAAATTTA+GGG | - | chr1_3:40464393-40464412 | None:intergenic | 30.0% | |
| ! | CCTAAATTTTCATGCAAACT+CGG | + | chr1_3:40464391-40464410 | Msa0118190:intron | 30.0% |
| ATGGATGAATATAAGATGCA+TGG | - | chr1_3:40464755-40464774 | None:intergenic | 30.0% | |
| AAAGGGTTGTTATAGATAGA+TGG | - | chr1_3:40464774-40464793 | None:intergenic | 30.0% | |
| !! | TTTTGAAAGCCATTGGTATT+TGG | - | chr1_3:40464808-40464827 | None:intergenic | 30.0% |
| ACATACAACTTCATAAACGT+TGG | - | chr1_3:40464836-40464855 | None:intergenic | 30.0% | |
| GTACAAGATTGAAAGAAGAT+AGG | - | chr1_3:40464861-40464880 | None:intergenic | 30.0% | |
| !!! | TCCATTTTGATTACCAAGAA+CGG | - | chr1_3:40464963-40464982 | None:intergenic | 30.0% |
| CAATAAGTTCACAAACTTAC+GGG | - | chr1_3:40465035-40465054 | None:intergenic | 30.0% | |
| CCAATAAGTTCACAAACTTA+CGG | - | chr1_3:40465036-40465055 | None:intergenic | 30.0% | |
| TTATTGGACTCATATCTTCA+AGG | + | chr1_3:40465049-40465068 | Msa0118190:intron | 30.0% | |
| ! | TGTTTGTTGGTTAGTCAAAA+CGG | - | chr1_3:40465236-40465255 | None:intergenic | 30.0% |
| TCTGATCAAAGAGTGAAAAA+TGG | + | chr1_3:40465283-40465302 | Msa0118190:intron | 30.0% | |
| ! | ATTGGAAGGCATGAAAATTA+AGG | + | chr1_3:40465661-40465680 | Msa0118190:intron | 30.0% |
| ! | CAACATAAGTCTTTTTGGAT+CGG | + | chr1_3:40465841-40465860 | Msa0118190:intron | 30.0% |
| TTTATGTACATCAGCATTGT+TGG | + | chr1_3:40466115-40466134 | Msa0118190:intron | 30.0% | |
| TATAAAGGTCATAGAAGGAA+CGG | - | chr1_3:40463670-40463689 | None:intergenic | 30.0% | |
| TGCACAACATGATAAGAAGA+TGG | + | chr1_3:40462436-40462455 | Msa0118190:five_prime_UTR | 35.0% | |
| AATTGTGCATAGCATAGTCA+CGG | - | chr1_3:40462565-40462584 | None:intergenic | 35.0% | |
| CTGTGAACAATTTGGTACAA+TGG | - | chr1_3:40462655-40462674 | None:intergenic | 35.0% | |
| CATTGTACCAAATTGTTCAC+AGG | + | chr1_3:40462653-40462672 | Msa0118190:five_prime_UTR | 35.0% | |
| AAACAGACCTGTGAACAATT+TGG | - | chr1_3:40462663-40462682 | None:intergenic | 35.0% | |
| TAAAACTACAACACAACCTC+TGG | + | chr1_3:40462799-40462818 | Msa0118190:five_prime_UTR | 35.0% | |
| ATATTGTGATTGGTATCCAG+AGG | - | chr1_3:40462818-40462837 | None:intergenic | 35.0% | |
| GCCACTTCTTCTCTATATTT+AGG | + | chr1_3:40462858-40462877 | Msa0118190:five_prime_UTR | 35.0% | |
| ! | TTGATTTGATGTAACCAGCA+AGG | + | chr1_3:40463058-40463077 | Msa0118190:intron | 35.0% |
| CAAAAATGATCCTTCAACTG+TGG | + | chr1_3:40463154-40463173 | Msa0118190:exon | 35.0% | |
| CGAAGGATTACTTTAATCTC+CGG | + | chr1_3:40463184-40463203 | Msa0118190:CDS | 35.0% | |
| GAAGGATTACTTTAATCTCC+GGG | + | chr1_3:40463185-40463204 | Msa0118190:CDS | 35.0% | |
| TCTAATGTTCCTGAACAAAG+AGG | - | chr1_3:40463408-40463427 | None:intergenic | 35.0% | |
| GCAAGTATAAAGGTCATAGA+AGG | - | chr1_3:40463675-40463694 | None:intergenic | 35.0% | |
| CGTATGAAGATAAAGGAGAT+TGG | + | chr1_3:40463934-40463953 | Msa0118190:intron | 35.0% | |
| ! | TAGGGTCATTCACATTTTCA+GGG | - | chr1_3:40464071-40464090 | None:intergenic | 35.0% |
| !!! | GTGCGATGCATTTTTTTAGA+TGG | - | chr1_3:40464218-40464237 | None:intergenic | 35.0% |
| TCAAAAAAAGGCAACAGGAT+AGG | - | chr1_3:40464328-40464347 | None:intergenic | 35.0% | |
| CCGAGTTTGCATGAAAATTT+AGG | - | chr1_3:40464394-40464413 | None:intergenic | 35.0% | |
| ! | ACCTAATGCAGCATTTTAGA+GGG | - | chr1_3:40464476-40464495 | None:intergenic | 35.0% |
| ! | AACCTAATGCAGCATTTTAG+AGG | - | chr1_3:40464477-40464496 | None:intergenic | 35.0% |
| CATGACAGGAATGAAAAGTT+AGG | - | chr1_3:40464556-40464575 | None:intergenic | 35.0% | |
| TCCATTCATCCAAATACCAA+TGG | + | chr1_3:40464796-40464815 | Msa0118190:intron | 35.0% | |
| !! | GGAACATTTTTGAAAGCCAT+TGG | - | chr1_3:40464815-40464834 | None:intergenic | 35.0% |
| GTTTATTGTACCCTTGCAAA+TGG | - | chr1_3:40464924-40464943 | None:intergenic | 35.0% | |
| ! | GAACGGTTTTACAATAAGCA+GGG | - | chr1_3:40464946-40464965 | None:intergenic | 35.0% |
| ! | AGAACGGTTTTACAATAAGC+AGG | - | chr1_3:40464947-40464966 | None:intergenic | 35.0% |
| GCTTATTGTAAAACCGTTCT+TGG | + | chr1_3:40464947-40464966 | Msa0118190:intron | 35.0% | |
| ! | ACCGTTCTTGGTAATCAAAA+TGG | + | chr1_3:40464959-40464978 | Msa0118190:intron | 35.0% |
| CCGTAAGTTTGTGAACTTAT+TGG | + | chr1_3:40465033-40465052 | Msa0118190:intron | 35.0% | |
| GAGGAAAGTCTCAAAATCTT+CGG | - | chr1_3:40465209-40465228 | None:intergenic | 35.0% | |
| GACTAACCAACAAACATGTT+TGG | + | chr1_3:40465240-40465259 | Msa0118190:intron | 35.0% | |
| AACCAACAAACATGTTTGGA+TGG | + | chr1_3:40465244-40465263 | Msa0118190:intron | 35.0% | |
| TCATATTTGTGCAGATTGGA+AGG | + | chr1_3:40465647-40465666 | Msa0118190:intron | 35.0% | |
| GGCATGAAAATTAAGGAGAT+AGG | + | chr1_3:40465668-40465687 | Msa0118190:intron | 35.0% | |
| ! | CGCATCAACATAAGTCTTTT+TGG | + | chr1_3:40465836-40465855 | Msa0118190:intron | 35.0% |
| GCAAGTATAAAGGTCATAGA+AGG | - | chr1_3:40463675-40463694 | None:intergenic | 35.0% | |
| ATGCTATGCACAATTGCACA+TGG | + | chr1_3:40462570-40462589 | Msa0118190:five_prime_UTR | 40.0% | |
| TATGCACAATTGCACATGGA+TGG | + | chr1_3:40462574-40462593 | Msa0118190:five_prime_UTR | 40.0% | |
| !!! | CAAATGTCCTTGGTGCTTTT+GGG | - | chr1_3:40462612-40462631 | None:intergenic | 40.0% |
| !!! | ACAAATGTCCTTGGTGCTTT+TGG | - | chr1_3:40462613-40462632 | None:intergenic | 40.0% |
| CCTCATTTCATAATCCTTGC+TGG | - | chr1_3:40463075-40463094 | None:intergenic | 40.0% | |
| CCAGCAAGGATTATGAAATG+AGG | + | chr1_3:40463072-40463091 | Msa0118190:intron | 40.0% | |
| ACAGTCTACATTCAAAGGTG+AGG | + | chr1_3:40463120-40463139 | Msa0118190:five_prime_UTR | 40.0% | |
| TCGAATCTTTCCACAGTTGA+AGG | - | chr1_3:40463167-40463186 | None:intergenic | 40.0% | |
| TCAACTGTGGAAAGATTCGA+AGG | + | chr1_3:40463167-40463186 | Msa0118190:CDS | 40.0% | |
| ATTACTTTAATCTCCGGGCA+AGG | + | chr1_3:40463190-40463209 | Msa0118190:CDS | 40.0% | |
| TTAGACCCAAGATGACAGTT+CGG | + | chr1_3:40463423-40463442 | Msa0118190:CDS | 40.0% | |
| AATACCCGAACTGTCATCTT+GGG | - | chr1_3:40463431-40463450 | None:intergenic | 40.0% | |
| AAATACCCGAACTGTCATCT+TGG | - | chr1_3:40463432-40463451 | None:intergenic | 40.0% | |
| ! | ATGACAGTTCGGGTATTTTG+TGG | + | chr1_3:40463434-40463453 | Msa0118190:intron | 40.0% |
| TGGTCAATGCTTCTCTTTCT+TGG | + | chr1_3:40463599-40463618 | Msa0118190:CDS | 40.0% | |
| GGTCAATGCTTCTCTTTCTT+GGG | + | chr1_3:40463600-40463619 | Msa0118190:CDS | 40.0% | |
| GTCAATGCTTCTCTTTCTTG+GGG | + | chr1_3:40463601-40463620 | Msa0118190:CDS | 40.0% | |
| ! | AAGCTAACGTCAGCATCTTT+TGG | + | chr1_3:40463627-40463646 | Msa0118190:CDS | 40.0% |
| ATTGGAACTATAGTCAGCCT+TGG | + | chr1_3:40463973-40463992 | Msa0118190:intron | 40.0% | |
| TCATTAATAGTGCTCCTCCA+AGG | - | chr1_3:40463993-40464012 | None:intergenic | 40.0% | |
| GACTTAGCAGCTTGAAGAAT+AGG | - | chr1_3:40464030-40464049 | None:intergenic | 40.0% | |
| ! | CTAGGGTCATTCACATTTTC+AGG | - | chr1_3:40464072-40464091 | None:intergenic | 40.0% |
| GAAAATGTGAATGACCCTAG+TGG | + | chr1_3:40464072-40464091 | Msa0118190:intron | 40.0% | |
| !! | TCCCTCTAAAATGCTGCATT+AGG | + | chr1_3:40464472-40464491 | Msa0118190:intron | 40.0% |
| AAACGATGACACAACATGAC+AGG | - | chr1_3:40464570-40464589 | None:intergenic | 40.0% | |
| GCCATTGGTATTTGGATGAA+TGG | - | chr1_3:40464800-40464819 | None:intergenic | 40.0% | |
| AAACTTACGGGATTGGGATA+AGG | - | chr1_3:40465023-40465042 | None:intergenic | 40.0% | |
| GTTCACAAACTTACGGGATT+GGG | - | chr1_3:40465029-40465048 | None:intergenic | 40.0% | |
| AGTTCACAAACTTACGGGAT+TGG | - | chr1_3:40465030-40465049 | None:intergenic | 40.0% | |
| GACCATCCAAACATGTTTGT+TGG | - | chr1_3:40465249-40465268 | None:intergenic | 40.0% | |
| ATGTACATCAGCATTGTTGG+AGG | + | chr1_3:40466118-40466137 | Msa0118190:intron | 40.0% | |
| TGGTCAATGCTTCTCTTTCT+TGG | + | chr1_3:40463599-40463618 | Msa0118190:CDS | 40.0% | |
| GGTCAATGCTTCTCTTTCTT+GGG | + | chr1_3:40463600-40463619 | Msa0118190:CDS | 40.0% | |
| GTCAATGCTTCTCTTTCTTG+GGG | + | chr1_3:40463601-40463620 | Msa0118190:CDS | 40.0% | |
| ! | AAGCTAACGTCAGCATCTTT+TGG | + | chr1_3:40463627-40463646 | Msa0118190:CDS | 40.0% |
| GCACCAAGGACATTTGTTCA+CGG | + | chr1_3:40462616-40462635 | Msa0118190:five_prime_UTR | 45.0% | |
| AGACCGTGAACAAATGTCCT+TGG | - | chr1_3:40462622-40462641 | None:intergenic | 45.0% | |
| TAGACCCAAGATGACAGTTC+GGG | + | chr1_3:40463424-40463443 | Msa0118190:CDS | 45.0% | |
| GGAAGTCAAGTGAAAGCGAT+TGG | + | chr1_3:40463955-40463974 | Msa0118190:intron | 45.0% | |
| ATGACCCTAGTGGTTCACAT+TGG | + | chr1_3:40464082-40464101 | Msa0118190:intron | 45.0% | |
| TCCACCTGAAACCATTTGCA+AGG | + | chr1_3:40464910-40464929 | Msa0118190:intron | 45.0% | |
| CCACCTGAAACCATTTGCAA+GGG | + | chr1_3:40464911-40464930 | Msa0118190:intron | 45.0% | |
| GTACCCTTGCAAATGGTTTC+AGG | - | chr1_3:40464917-40464936 | None:intergenic | 45.0% | |
| ! | ATCTTCAAGAGCGCGAATTG+TGG | - | chr1_3:40465095-40465114 | None:intergenic | 45.0% |
| !!! | TTTTGTAATTATTTATTTAT+AGG | + | chr1_3:40463568-40463587 | Msa0118190:intron | 5.0% |
| !! | TGCCAAACCCAAAAGCACCA+AGG | + | chr1_3:40462602-40462621 | Msa0118190:five_prime_UTR | 50.0% |
| !!! | GTCCTTGGTGCTTTTGGGTT+TGG | - | chr1_3:40462607-40462626 | None:intergenic | 50.0% |
| ACACGACGACAACAGCATTC+CGG | - | chr1_3:40462979-40462998 | None:intergenic | 50.0% | |
| GGAACTATAGTCAGCCTTGG+AGG | + | chr1_3:40463976-40463995 | Msa0118190:intron | 50.0% | |
| CGAGCCAATGTGAACCACTA+GGG | - | chr1_3:40464089-40464108 | None:intergenic | 50.0% | |
| ACGAGCCAATGTGAACCACT+AGG | - | chr1_3:40464090-40464109 | None:intergenic | 50.0% | |
| CCCTTGCAAATGGTTTCAGG+TGG | - | chr1_3:40464914-40464933 | None:intergenic | 50.0% | |
| CATCAGCATTGTTGGAGGAG+TGG | + | chr1_3:40466123-40466142 | Msa0118190:intron | 50.0% | |
| !!! | GGTGCTTTTGGGTTTGGCAG+TGG | - | chr1_3:40462601-40462620 | None:intergenic | 55.0% |
| TAGTTGACGACGGCAGACGT+TGG | - | chr1_3:40462951-40462970 | None:intergenic | 55.0% | |
| ACGACAACAGCATTCCGGTG+CGG | - | chr1_3:40462974-40462993 | None:intergenic | 55.0% | |
| ! | GGTTAGTCAAAACGGCGCTG+AGG | - | chr1_3:40465228-40465247 | None:intergenic | 55.0% |
| CAGCATTGTTGGAGGAGTGG+TGG | + | chr1_3:40466126-40466145 | Msa0118190:intron | 55.0% | |
| CATTGTTGGAGGAGTGGTGG+TGG | + | chr1_3:40466129-40466148 | Msa0118190:CDS | 55.0% | |
| ! | GCAGACGTTGGTGCTTGCGA+AGG | - | chr1_3:40462939-40462958 | None:intergenic | 60.0% |
| TCCGGTGCGGTAGTTGACGA+CGG | - | chr1_3:40462961-40462980 | None:intergenic | 60.0% | |
| GCCGTCGTCAACTACCGCAC+CGG | + | chr1_3:40462957-40462976 | Msa0118190:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 40462316 | 40466260 | 40462316 | ID=Msa0118190;Name=Msa0118190 |
| chr1_3 | mRNA | 40462316 | 40466260 | 40462316 | ID=Msa0118190-mRNA-1;Parent=Msa0118190;Name=Msa0118190-mRNA-1;_AED=0.32;_eAED=0.32;_QI=646|0.6|0.66|1|0.4|0.5|6|0|109 |
| chr1_3 | exon | 40462316 | 40462678 | 40462316 | ID=Msa0118190-mRNA-1:exon:12353;Parent=Msa0118190-mRNA-1 |
| chr1_3 | exon | 40462797 | 40462996 | 40462797 | ID=Msa0118190-mRNA-1:exon:12354;Parent=Msa0118190-mRNA-1 |
| chr1_3 | exon | 40463076 | 40463211 | 40463076 | ID=Msa0118190-mRNA-1:exon:12355;Parent=Msa0118190-mRNA-1 |
| chr1_3 | exon | 40463418 | 40463445 | 40463418 | ID=Msa0118190-mRNA-1:exon:12356;Parent=Msa0118190-mRNA-1 |
| chr1_3 | exon | 40463590 | 40463706 | 40463590 | ID=Msa0118190-mRNA-1:exon:12357;Parent=Msa0118190-mRNA-1 |
| chr1_3 | exon | 40466129 | 40466260 | 40466129 | ID=Msa0118190-mRNA-1:exon:12358;Parent=Msa0118190-mRNA-1 |
| chr1_3 | five_prime_UTR | 40462316 | 40462678 | 40462316 | ID=Msa0118190-mRNA-1:five_prime_utr;Parent=Msa0118190-mRNA-1 |
| chr1_3 | five_prime_UTR | 40462797 | 40462996 | 40462797 | ID=Msa0118190-mRNA-1:five_prime_utr;Parent=Msa0118190-mRNA-1 |
| chr1_3 | five_prime_UTR | 40463076 | 40463158 | 40463076 | ID=Msa0118190-mRNA-1:five_prime_utr;Parent=Msa0118190-mRNA-1 |
| chr1_3 | CDS | 40463159 | 40463211 | 40463159 | ID=Msa0118190-mRNA-1:cds;Parent=Msa0118190-mRNA-1 |
| chr1_3 | CDS | 40463418 | 40463445 | 40463418 | ID=Msa0118190-mRNA-1:cds;Parent=Msa0118190-mRNA-1 |
| chr1_3 | CDS | 40463590 | 40463706 | 40463590 | ID=Msa0118190-mRNA-1:cds;Parent=Msa0118190-mRNA-1 |
| chr1_3 | CDS | 40466129 | 40466260 | 40466129 | ID=Msa0118190-mRNA-1:cds;Parent=Msa0118190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
