AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0165250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0165250 MtrunA17_Chr1g0209661 68.889 45 14 0 4 48 21 65 1.48e-13 63.2
Msa0165250 MtrunA17_Chr2g0293911 58.333 48 20 0 1 48 15 62 7.52e-11 55.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 134 sgRNAs with CRISPR-Local

Find 463 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATAAAACTGATGTTTC+TGG 0.157585 1_4:-45689359 None:intergenic
ATTAGCTTCAATTTCATAAA+AGG 0.203724 1_4:-45686532 None:intergenic
TTGCAGACACTTTGTATCTT+TGG 0.207166 1_4:+45687919 Msa0165250:three_prime_UTR
AGGTGATAAATGCTGCTTTC+AGG 0.246271 1_4:-45689483 None:intergenic
TGCAGACACTTTGTATCTTT+GGG 0.250970 1_4:+45687920 Msa0165250:three_prime_UTR
TAGATATTGCTGAGATTGTT+AGG 0.256929 1_4:+45689378 Msa0165250:three_prime_UTR
GGAACATCAGCTTTGCATTC+TGG 0.283596 1_4:-45683600 None:intergenic
GGTTAAAATCCGCTTATTCT+TGG 0.310024 1_4:-45688280 None:intergenic
ACCAAGGTGATGATGAAGTT+TGG 0.323604 1_4:-45687322 None:intergenic
CGTTCTTCAGATGTACTGTT+TGG 0.329382 1_4:-45684853 None:intergenic
AAGCTAATCAATCAAAACTT+TGG 0.335623 1_4:+45686547 Msa0165250:three_prime_UTR
TTTACCAAAGAAGGATCTAT+TGG 0.337174 1_4:-45686129 None:intergenic
AATTTCTTGGCTACGAGTTC+AGG 0.341882 1_4:+45681578 Msa0165250:CDS
TGTTATTTACTGCAGTTGTC+GGG 0.344456 1_4:-45688152 None:intergenic
AAGATGATAATGAGCTTAGA+AGG 0.344977 1_4:+45681486 Msa0165250:CDS
TCGTACTTAGCAAAGATGTT+TGG 0.347971 1_4:-45688102 None:intergenic
TAAAGAAGCATTGAAAATTC+AGG 0.354516 1_4:+45688476 Msa0165250:three_prime_UTR
CATAACAGAGAGAGAACTTC+AGG 0.356856 1_4:+45687229 Msa0165250:intron
GGAATGAAATTACCTTGTTC+AGG 0.359907 1_4:-45688506 None:intergenic
GCTTGGTTGGACAATGATAT+TGG 0.362000 1_4:+45686588 Msa0165250:three_prime_UTR
AGCTAATCAATCAAAACTTT+GGG 0.364180 1_4:+45686548 Msa0165250:three_prime_UTR
CCAGCCAATAGATCCTTCTT+TGG 0.364262 1_4:+45686125 Msa0165250:three_prime_UTR
CATACCTCCCCTTTGATTGA+AGG 0.365247 1_4:-45684805 None:intergenic
GAATGATATTTGCTCACCTT+TGG 0.371946 1_4:+45686715 Msa0165250:three_prime_UTR
CGTACTTAGCAAAGATGTTT+GGG 0.372522 1_4:-45688101 None:intergenic
AACAAAGTTCTGCAGCAATA+TGG 0.373710 1_4:+45688171 Msa0165250:three_prime_UTR
AGGGTCACGGCAACTTCAAT+GGG 0.375879 1_4:+45687249 Msa0165250:three_prime_UTR
CCAAGGTGATGATGAAGTTT+GGG 0.382258 1_4:-45687321 None:intergenic
TTGTTATTTACTGCAGTTGT+CGG 0.385817 1_4:-45688153 None:intergenic
AGAATGAAGCAGATTGCTTT+TGG 0.392479 1_4:+45686750 Msa0165250:three_prime_UTR
AGGCTTCAGTTGCTCCTGAC+TGG 0.393517 1_4:+45689225 Msa0165250:three_prime_UTR
AATTGAAATAAAGAAAATAA+TGG 0.398363 1_4:-45689248 None:intergenic
AGTGTTCTTATGATGCGTTC+TGG 0.398602 1_4:+45683543 Msa0165250:exon
ATTCCATGCCCCACATCAAC+TGG 0.401936 1_4:-45688074 None:intergenic
CAGGGTCACGGCAACTTCAA+TGG 0.403253 1_4:+45687248 Msa0165250:three_prime_UTR
TGAAGGGAGATGGAATTTCT+TGG 0.408000 1_4:+45681565 Msa0165250:CDS
AATTTCGCAGAGGATTTAGA+TGG 0.409934 1_4:+45687837 Msa0165250:intron
GTCTTAATCTTTACCAAAGA+AGG 0.418418 1_4:-45686138 None:intergenic
AAAGAAAATAATGGCCAGTC+AGG 0.422485 1_4:-45689239 None:intergenic
AGATATTGCTGAGATTGTTA+GGG 0.423861 1_4:+45689379 Msa0165250:three_prime_UTR
AATCTTTGAATTCTTCAATA+CGG 0.430454 1_4:+45689316 Msa0165250:three_prime_UTR
AGTCAGGAGCAACTGAAGCC+TGG 0.445837 1_4:-45689223 None:intergenic
ATTTAATGAAGAAGGTCGTT+TGG 0.446674 1_4:+45684306 Msa0165250:three_prime_UTR
GCTTTGCATTCTGGTCGAAT+GGG 0.450111 1_4:-45683591 None:intergenic
AGCTTTGCATTCTGGTCGAA+TGG 0.451360 1_4:-45683592 None:intergenic
CTTCAATCAAAGGGGAGGTA+TGG 0.455332 1_4:+45684806 Msa0165250:three_prime_UTR
GTGTCCATCCTTCAATCAAA+GGG 0.456060 1_4:+45684797 Msa0165250:three_prime_UTR
AAACTATCTCTTCAGATCTT+GGG 0.457129 1_4:+45688417 Msa0165250:intron
CTTGGTTTAAATCGAGTTGT+TGG 0.459273 1_4:-45683621 None:intergenic
CTTTGCGTTTCGCATGCTGA+TGG 0.461102 1_4:+45687872 Msa0165250:three_prime_UTR
AATCTAATGTTGTTCGGTCA+TGG 0.464150 1_4:-45689157 None:intergenic
AAGGTGGAGTAGTTGATGAT+TGG 0.464304 1_4:+45683504 Msa0165250:CDS
CTGCAAAAGAAAATTCTCTT+CGG 0.465835 1_4:-45687902 None:intergenic
ACAGAAAATCTAATGTTGTT+CGG 0.475229 1_4:-45689163 None:intergenic
ATCAAGCACATTGCTAATCA+TGG 0.484842 1_4:+45681542 Msa0165250:CDS
TTTAACCGAGGCCAAGGGTG+TGG 0.488018 1_4:+45688296 Msa0165250:three_prime_UTR
ACACCCCTCGTCGGTGATGA+TGG 0.491285 1_4:+45686102 Msa0165250:three_prime_UTR
TGGTTGCGCATGATCTTCCC+AGG 0.491770 1_4:+45689205 Msa0165250:three_prime_UTR
AATTCAGCATTTAATGAAGA+AGG 0.491910 1_4:+45684298 Msa0165250:three_prime_UTR
CTAATCATGGTGAAGGGAGA+TGG 0.493171 1_4:+45681555 Msa0165250:CDS
GACAACATCATCCACACCCT+TGG 0.493741 1_4:-45688307 None:intergenic
CTGCAGTTATTACATCAGAT+TGG 0.495324 1_4:+45686186 Msa0165250:three_prime_UTR
ACTTTCATAAGTTGTAACAT+AGG 0.496779 1_4:+45689446 Msa0165250:three_prime_UTR
AGACTTTAAGTGCAAGAAGA+TGG 0.503037 1_4:+45684275 Msa0165250:three_prime_UTR
TTCAATCAAAGGGGAGGTAT+GGG 0.503151 1_4:+45684807 Msa0165250:three_prime_UTR
GTCAGGAGCAACTGAAGCCT+GGG 0.508230 1_4:-45689222 None:intergenic
GAGGTATGGGAGTTCTTACT+AGG 0.509597 1_4:+45684820 Msa0165250:three_prime_UTR
TCTATCGATTTATGCTTGGT+TGG 0.517744 1_4:+45686575 Msa0165250:three_prime_UTR
CCAAAGAAGGATCTATTGGC+TGG 0.519514 1_4:-45686125 None:intergenic
TAGATTGTTTCCAGTTGATG+TGG 0.522281 1_4:+45688064 Msa0165250:intron
ATCATCCACACCCTTGGCCT+CGG 0.523840 1_4:-45688301 None:intergenic
TAGTTGATGATTGGTTGTGG+TGG 0.526635 1_4:+45683513 Msa0165250:CDS
CACATTGCTAATCATGGTGA+AGG 0.528438 1_4:+45681548 Msa0165250:CDS
TTTCCAGTTGATGTGGGGCA+TGG 0.528620 1_4:+45688071 Msa0165250:three_prime_UTR
ATGAGCTTAGAAGGAGACCT+TGG 0.529929 1_4:+45681495 Msa0165250:CDS
ATGTTCTATCGATTTATGCT+TGG 0.530760 1_4:+45686571 Msa0165250:three_prime_UTR
GAGTAGTTGATGATTGGTTG+TGG 0.533842 1_4:+45683510 Msa0165250:CDS
CAAAAGATAGTCCCAGTCCT+TGG 0.534490 1_4:+45686060 Msa0165250:three_prime_UTR
ATAGCAAATAGAAACACTGT+TGG 0.541783 1_4:+45683473 Msa0165250:CDS
AACACTGTTGGAATTGAAGA+AGG 0.542438 1_4:+45683485 Msa0165250:CDS
ATAGTCCCAGTCCTTGGTAG+TGG 0.544048 1_4:+45686066 Msa0165250:three_prime_UTR
TTCGCAGAGGATTTAGATGG+TGG 0.544888 1_4:+45687840 Msa0165250:intron
AATTTCCCACTACCAAGGAC+TGG 0.551856 1_4:-45686072 None:intergenic
GGTGTCCATCCTTCAATCAA+AGG 0.554064 1_4:+45684796 Msa0165250:three_prime_UTR
AATGATATTGGTTACGTGCA+AGG 0.555790 1_4:+45686600 Msa0165250:three_prime_UTR
CACAGAAGAAAATAGTGCAC+TGG 0.560074 1_4:+45688227 Msa0165250:three_prime_UTR
GTTATTTACTGCAGTTGTCG+GGG 0.562804 1_4:-45688151 None:intergenic
TCATCCTCTTCAAGAGTCCA+AGG 0.566218 1_4:-45681512 None:intergenic
AGATTGTTTCCAGTTGATGT+GGG 0.569904 1_4:+45688065 Msa0165250:intron
TTCTTGAGACCAAGAATAAG+CGG 0.570669 1_4:+45688271 Msa0165250:three_prime_UTR
AAAGATTTAGAATCGACTTG+AGG 0.581927 1_4:-45689300 None:intergenic
CTGGCCATCATCACCGACGA+GGG 0.583759 1_4:-45686106 None:intergenic
CCTCCCCTTTGATTGAAGGA+TGG 0.584741 1_4:-45684801 None:intergenic
TGACCGTGCGATGCGAAGGA+TGG 0.584801 1_4:+45686778 Msa0165250:three_prime_UTR
CCCAAACTTCATCATCACCT+TGG 0.586296 1_4:+45687321 Msa0165250:three_prime_UTR
GCTTTGACCGTGCGATGCGA+AGG 0.590644 1_4:+45686774 Msa0165250:three_prime_UTR
CAACAACTCGATTTAAACCA+AGG 0.590717 1_4:+45683622 Msa0165250:three_prime_UTR
CTTTGCATTCTGGTCGAATG+GGG 0.600210 1_4:-45683590 None:intergenic
GAGAGAGAACTTCAGGGTCA+CGG 0.600516 1_4:+45687236 Msa0165250:intron
TAGTCCCAGTCCTTGGTAGT+GGG 0.603102 1_4:+45686067 Msa0165250:three_prime_UTR
TTCTGAGACGAATACAGCGA+GGG 0.604305 1_4:+45684341 Msa0165250:three_prime_UTR
TTTCATAAAAGGCAAGTGCT+CGG 0.605214 1_4:-45686521 None:intergenic
CTACCATCCTTCGCATCGCA+CGG 0.607222 1_4:-45686781 None:intergenic
ATAACAGAGAGAGAACTTCA+GGG 0.610985 1_4:+45687230 Msa0165250:intron
GATTGTTTCCAGTTGATGTG+GGG 0.616381 1_4:+45688066 Msa0165250:intron
AACAACTCGATTTAAACCAA+GGG 0.617507 1_4:+45683623 Msa0165250:three_prime_UTR
GAGACCTTGGACTCTTGAAG+AGG 0.623367 1_4:+45681508 Msa0165250:CDS
TAACAAATTTCCCACTACCA+AGG 0.624907 1_4:-45686077 None:intergenic
AGACACTTTGTATCTTTGGG+AGG 0.625099 1_4:+45687923 Msa0165250:three_prime_UTR
GATATTGCTGAGATTGTTAG+GGG 0.626948 1_4:+45689380 Msa0165250:three_prime_UTR
TGGCCATCATCACCGACGAG+GGG 0.627189 1_4:-45686105 None:intergenic
GGGTGTGGATGATGTTGTCA+AGG 0.632112 1_4:+45688311 Msa0165250:three_prime_UTR
ATTTCCCACTACCAAGGACT+GGG 0.635175 1_4:-45686071 None:intergenic
GCTAAGTACGAGGATCCAGA+TGG 0.638060 1_4:+45688114 Msa0165250:three_prime_UTR
TGTGCAGAAAATGATCGTGA+TGG 0.639975 1_4:+45683446 Msa0165250:intron
ACTGTTGGAATTGAAGAAGG+TGG 0.640649 1_4:+45683488 Msa0165250:CDS
CAGATAAGAAAGTTGTGCAG+TGG 0.644760 1_4:+45686163 Msa0165250:three_prime_UTR
ACATTGCTAATCATGGTGAA+GGG 0.647938 1_4:+45681549 Msa0165250:CDS
GGAATGAGCTCAAGCAACGC+CGG 0.647980 1_4:+45684875 Msa0165250:three_prime_UTR
TAACGATATGATGGCAGCTG+TGG 0.651752 1_4:+45689185 Msa0165250:three_prime_UTR
CAAACAGTACATCTGAAGAA+CGG 0.654428 1_4:+45684854 Msa0165250:three_prime_UTR
TTCTCAATAAGAATAACCAA+AGG 0.664555 1_4:-45686731 None:intergenic
CCATCCTTCAATCAAAGGGG+AGG 0.665030 1_4:+45684801 Msa0165250:three_prime_UTR
GGGTCACGGCAACTTCAATG+GGG 0.667044 1_4:+45687250 Msa0165250:three_prime_UTR
TTTGTTACAACACCCCTCGT+CGG 0.671778 1_4:+45686093 Msa0165250:three_prime_UTR
GCTGGCCATCATCACCGACG+AGG 0.684089 1_4:-45686107 None:intergenic
TCTGAGACGAATACAGCGAG+GGG 0.696888 1_4:+45684342 Msa0165250:three_prime_UTR
GATTAGCAATGTGCTTGATG+AGG 0.700681 1_4:-45681538 None:intergenic
ATGAGCTCAAGCAACGCCGG+AGG 0.701330 1_4:+45684878 Msa0165250:three_prime_UTR
GGTCACGGCAACTTCAATGG+GGG 0.701438 1_4:+45687251 Msa0165250:three_prime_UTR
ATATTGCTGAGATTGTTAGG+GGG 0.709862 1_4:+45689381 Msa0165250:three_prime_UTR
GTTCTGAGACGAATACAGCG+AGG 0.713018 1_4:+45684340 Msa0165250:three_prime_UTR
TGTCCATCCTTCAATCAAAG+GGG 0.719618 1_4:+45684798 Msa0165250:three_prime_UTR
AAACATCTTTGCTAAGTACG+AGG 0.721179 1_4:+45688104 Msa0165250:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTATAATTTTTTAA+AGG - chr1_4:45682010-45682029 None:intergenic 0.0%
!! ATTACCAAAAATAAAAAATA+GGG - chr1_4:45682224-45682243 None:intergenic 10.0%
!! TATTACCAAAAATAAAAAAT+AGG - chr1_4:45682225-45682244 None:intergenic 10.0%
!!! AAAATTGATTTTTTTTTTGT+TGG + chr1_4:45683413-45683432 Msa0165250:intron 10.0%
!!! AAATTGATTTTTTTTTTGTT+GGG + chr1_4:45683414-45683433 Msa0165250:intron 10.0%
!! TATATAATAACAATATTTGT+GGG - chr1_4:45684155-45684174 None:intergenic 10.0%
!! ATATATAATAACAATATTTG+TGG - chr1_4:45684156-45684175 None:intergenic 10.0%
!!! AAGATAAATTTTAATCAAAA+CGG - chr1_4:45684224-45684243 None:intergenic 10.0%
!!! AAAACTCAATTATATTTTTT+AGG + chr1_4:45686229-45686248 Msa0165250:intron 10.0%
!! AAGTAAATTTGTATAAAAAT+GGG + chr1_4:45686298-45686317 Msa0165250:intron 10.0%
!! TTTAACATTAAAAAATTGAA+AGG - chr1_4:45686638-45686657 None:intergenic 10.0%
!! AATTGAAATAAAGAAAATAA+TGG - chr1_4:45689251-45689270 None:intergenic 10.0%
!!! AAAACTTTTATTTATTGTAT+TGG + chr1_4:45689405-45689424 Msa0165250:three_prime_UTR 10.0%
!! AATTTAGCTATATTAATCTA+CGG - chr1_4:45681722-45681741 None:intergenic 15.0%
!!! ATTACATATCTTAGTTTTTT+TGG + chr1_4:45681772-45681791 Msa0165250:intron 15.0%
!! TCACTTAAAATTAATTATTG+TGG + chr1_4:45682994-45683013 Msa0165250:intron 15.0%
!! GTATGGTTATATAATATATA+CGG - chr1_4:45683020-45683039 None:intergenic 15.0%
!!! TATATAAGCTTTTTTCTTAA+CGG - chr1_4:45683127-45683146 None:intergenic 15.0%
!! TTTCAATTAAATGTTTATGT+AGG + chr1_4:45684906-45684925 Msa0165250:intron 15.0%
!! ATGATAATAACAAAGAAATA+TGG + chr1_4:45685584-45685603 Msa0165250:intron 15.0%
!! ATAAAGATAAAAAAAAAAGG+AGG - chr1_4:45685958-45685977 None:intergenic 15.0%
!! TTAATGTAAATTATTATCCA+GGG + chr1_4:45686008-45686027 Msa0165250:intron 15.0%
!! GAAGTAAATTTGTATAAAAA+TGG + chr1_4:45686297-45686316 Msa0165250:intron 15.0%
!!! AAAATTAACAACAGATTTTA+AGG - chr1_4:45686886-45686905 None:intergenic 15.0%
!! AAATAGAAAACAAAGTAAAA+AGG + chr1_4:45687117-45687136 Msa0165250:intron 15.0%
!!! TTTTTTATTTTATGCCTTTT+TGG + chr1_4:45688536-45688555 Msa0165250:intron 15.0%
!! CAAACAAAATTGAAAAATTA+AGG - chr1_4:45688787-45688806 None:intergenic 15.0%
!! CAAACAAAATTGAAAAATTA+AGG - chr1_4:45688787-45688806 None:intergenic 15.0%
!!! TTGCTTTATCTTTTTTGATT+TGG + chr1_4:45681674-45681693 Msa0165250:intron 20.0%
!!! TGCTTTATCTTTTTTGATTT+GGG + chr1_4:45681675-45681694 Msa0165250:intron 20.0%
!!! TCTTAGTTAGTCTTAATTAA+AGG + chr1_4:45681872-45681891 Msa0165250:intron 20.0%
!! TAGGTTATAAACAAATGTAT+TGG - chr1_4:45682291-45682310 None:intergenic 20.0%
!!! ATAATTTTATAACGAGCTTA+TGG + chr1_4:45682340-45682359 Msa0165250:intron 20.0%
!! AAATGTGATATTTCATATCT+TGG - chr1_4:45682536-45682555 None:intergenic 20.0%
!! AAGAATACTTTCAATTTAAG+TGG + chr1_4:45682768-45682787 Msa0165250:intron 20.0%
!!! TTTTCATCAATATCCTATTT+TGG - chr1_4:45683091-45683110 None:intergenic 20.0%
!!! TTTGATATAAAAGTGCATTT+GGG - chr1_4:45683667-45683686 None:intergenic 20.0%
!!! ATTTGATATAAAAGTGCATT+TGG - chr1_4:45683668-45683687 None:intergenic 20.0%
!! CAATAGCATACTATTTATTA+GGG - chr1_4:45683789-45683808 None:intergenic 20.0%
!!! TTTTTTAACTCTTTTTTGGT+AGG + chr1_4:45684048-45684067 Msa0165250:intron 20.0%
!! TTTCTTTCTATACATTATGT+AGG + chr1_4:45684774-45684793 Msa0165250:intron 20.0%
!! TTCTTTCTATACATTATGTA+GGG + chr1_4:45684775-45684794 Msa0165250:intron 20.0%
!! TTTAATTGAAAATATACCTC+CGG - chr1_4:45684897-45684916 None:intergenic 20.0%
!!! AGCCTTTTGTAAAATTAATT+GGG - chr1_4:45685383-45685402 None:intergenic 20.0%
!!! AAGCCTTTTGTAAAATTAAT+TGG - chr1_4:45685384-45685403 None:intergenic 20.0%
!! TATAACTTATTATCTAACAC+AGG + chr1_4:45685403-45685422 Msa0165250:intron 20.0%
!! ATAACTTATTATCTAACACA+GGG + chr1_4:45685404-45685423 Msa0165250:intron 20.0%
!!! CTTGTCTAGAATAAATATAA+GGG - chr1_4:45685531-45685550 None:intergenic 20.0%
!!! TCTTGTCTAGAATAAATATA+AGG - chr1_4:45685532-45685551 None:intergenic 20.0%
!! ATATTATGCTCATATTCTTT+GGG - chr1_4:45685836-45685855 None:intergenic 20.0%
!! AATATTATGCTCATATTCTT+TGG - chr1_4:45685837-45685856 None:intergenic 20.0%
!! AAAGAATATGAGCATAATAT+TGG + chr1_4:45685836-45685855 Msa0165250:intron 20.0%
!! AAGAATATGAGCATAATATT+GGG + chr1_4:45685837-45685856 Msa0165250:intron 20.0%
!!! CTTTTACTGATTTTTCTAAT+AGG + chr1_4:45685887-45685906 Msa0165250:intron 20.0%
!! CTTAATGTAAATTATTATCC+AGG + chr1_4:45686007-45686026 Msa0165250:intron 20.0%
!! TAATGTAAATTATTATCCAG+GGG + chr1_4:45686009-45686028 Msa0165250:intron 20.0%
!! CCAAACATAATAAAAAAAAC+AGG - chr1_4:45686426-45686445 None:intergenic 20.0%
!!! CCTGTTTTTTTTATTATGTT+TGG + chr1_4:45686423-45686442 Msa0165250:intron 20.0%
!!! AATTGATTATTTTGCATTGT+AGG + chr1_4:45686477-45686496 Msa0165250:intron 20.0%
!!! ATTAGCTTCAATTTCATAAA+AGG - chr1_4:45686535-45686554 None:intergenic 20.0%
!! GAAATTTCAGATATTCTTAA+TGG + chr1_4:45686672-45686691 Msa0165250:intron 20.0%
!! GTGAAAAGAATAAAATATTG+TGG - chr1_4:45687075-45687094 None:intergenic 20.0%
!! AATGTAGAAAGTAAAAACAA+CGG - chr1_4:45687196-45687215 None:intergenic 20.0%
!!! TGGTTGAAGTTTTTTTTTTA+AGG + chr1_4:45687446-45687465 Msa0165250:intron 20.0%
!!! GGTTGAAGTTTTTTTTTTAA+GGG + chr1_4:45687447-45687466 Msa0165250:intron 20.0%
!!! GTTGAAGTTTTTTTTTTAAG+GGG + chr1_4:45687448-45687467 Msa0165250:intron 20.0%
!!! TTGAAGTTTTTTTTTTAAGG+GGG + chr1_4:45687449-45687468 Msa0165250:intron 20.0%
!! AAATTAAAAGAGATAAAGGT+TGG - chr1_4:45687822-45687841 None:intergenic 20.0%
!! CATAAAATAAAAAATTCAGC+AGG - chr1_4:45688530-45688549 None:intergenic 20.0%
!! AATTCCCAATTTGTAATTAA+AGG - chr1_4:45688595-45688614 None:intergenic 20.0%
!!! TGTTTTTCATGTATATGTAA+AGG + chr1_4:45688632-45688651 Msa0165250:intron 20.0%
!!! AAATTTTCACATATCTAGTA+AGG - chr1_4:45689105-45689124 None:intergenic 20.0%
!! AATCTTTGAATTCTTCAATA+CGG + chr1_4:45689316-45689335 Msa0165250:three_prime_UTR 20.0%
!!! AAGTTTGCTAGTGAAATATA+TGG + chr1_4:45681606-45681625 Msa0165250:intron 25.0%
! TTAAAGTCAGACATAAAGAA+AGG + chr1_4:45681744-45681763 Msa0165250:intron 25.0%
!!! ACATATCTTAGTTTTTTTGG+TGG + chr1_4:45681775-45681794 Msa0165250:intron 25.0%
! AACAATGCATAATATATGCA+TGG - chr1_4:45681820-45681839 None:intergenic 25.0%
!!! TGTCTTAAGAACACTTTTTA+AGG - chr1_4:45681974-45681993 None:intergenic 25.0%
!!! AAAAAGTAATGGATGAACAT+AGG - chr1_4:45682189-45682208 None:intergenic 25.0%
!!! TCCATTACTTTTTAAGTCAA+AGG + chr1_4:45682196-45682215 Msa0165250:intron 25.0%
!!! GTCATTATAGCCTTTTTTTA+AGG + chr1_4:45682251-45682270 Msa0165250:intron 25.0%
! AACAATGACTCCTTAAAAAA+AGG - chr1_4:45682264-45682283 None:intergenic 25.0%
!!! AATATCCTATTTTGGAAGAA+GGG - chr1_4:45683083-45683102 None:intergenic 25.0%
!!! CAATTTTTTCTTTGATGACA+GGG - chr1_4:45683400-45683419 None:intergenic 25.0%
!!! TCAATTTTTTCTTTGATGAC+AGG - chr1_4:45683401-45683420 None:intergenic 25.0%
! ATCCAAAATTGAAATATGTC+CGG - chr1_4:45683753-45683772 None:intergenic 25.0%
! GCAATAGCATACTATTTATT+AGG - chr1_4:45683790-45683809 None:intergenic 25.0%
! TATTGCATGAATTTATGCTA+AGG + chr1_4:45683804-45683823 Msa0165250:intron 25.0%
!!! GAGGTTTTTTAACTCTTTTT+TGG + chr1_4:45684044-45684063 Msa0165250:intron 25.0%
! AATTCAGCATTTAATGAAGA+AGG + chr1_4:45684298-45684317 Msa0165250:three_prime_UTR 25.0%
! ATAACTACCGTTTAATTGTA+TGG + chr1_4:45684458-45684477 Msa0165250:intron 25.0%
! AGCTATAACATAAGATAAAG+AGG + chr1_4:45684935-45684954 Msa0165250:intron 25.0%
!! ATGTTTCTGTTCATAGTATA+TGG + chr1_4:45684968-45684987 Msa0165250:intron 25.0%
! TTTAGTCTCGTATAATACAA+TGG - chr1_4:45685110-45685129 None:intergenic 25.0%
!! AGACTAAAAATTTTACCTCT+TGG + chr1_4:45685122-45685141 Msa0165250:intron 25.0%
!! TAAAAATTTTACCTCTTGGA+TGG + chr1_4:45685126-45685145 Msa0165250:intron 25.0%
! TACAAATGCAAAATAGAGAA+TGG + chr1_4:45685243-45685262 Msa0165250:intron 25.0%
! ACAAATGCAAAATAGAGAAT+GGG + chr1_4:45685244-45685263 Msa0165250:intron 25.0%
! TGTAAAATTAATTGGGCTAA+GGG - chr1_4:45685376-45685395 None:intergenic 25.0%
! TTGTAAAATTAATTGGGCTA+AGG - chr1_4:45685377-45685396 None:intergenic 25.0%
!! AGCCCAATTAATTTTACAAA+AGG + chr1_4:45685378-45685397 Msa0165250:intron 25.0%
! AAGACTTTCAATTATGATCA+TGG + chr1_4:45685456-45685475 Msa0165250:intron 25.0%
! ATCAGTAAAAGATTATTACG+AGG - chr1_4:45685878-45685897 None:intergenic 25.0%
! AAAAAAGGAGGAAAAAACAT+GGG - chr1_4:45685946-45685965 None:intergenic 25.0%
! AAAAAAAGGAGGAAAAAACA+TGG - chr1_4:45685947-45685966 None:intergenic 25.0%
! AATGTAAATTATTATCCAGG+GGG + chr1_4:45686010-45686029 Msa0165250:intron 25.0%
! TTTATTAACCAATGCTCTTA+GGG - chr1_4:45686271-45686290 None:intergenic 25.0%
!! CAAGACAAATTTTCCTTTTA+TGG + chr1_4:45686360-45686379 Msa0165250:intron 25.0%
! AAGCTAATCAATCAAAACTT+TGG + chr1_4:45686547-45686566 Msa0165250:three_prime_UTR 25.0%
! AGCTAATCAATCAAAACTTT+GGG + chr1_4:45686548-45686567 Msa0165250:three_prime_UTR 25.0%
!!! TAATGGATTATTTCATTTGC+AGG + chr1_4:45686689-45686708 Msa0165250:intron 25.0%
! TTCTCAATAAGAATAACCAA+AGG - chr1_4:45686734-45686753 None:intergenic 25.0%
! AAATGTTTAATCTCCATTTG+AGG + chr1_4:45686926-45686945 Msa0165250:intron 25.0%
! AATGTTTAATCTCCATTTGA+GGG + chr1_4:45686927-45686946 Msa0165250:intron 25.0%
!! CTTCAAAAACATGCTTTAAA+GGG - chr1_4:45687030-45687049 None:intergenic 25.0%
! ACTTCAAAAACATGCTTTAA+AGG - chr1_4:45687031-45687050 None:intergenic 25.0%
!!! ATGTTTTTGAAGTTTTGTGT+AGG + chr1_4:45687038-45687057 Msa0165250:intron 25.0%
! AGAATAAAATATTGTGGTTG+TGG - chr1_4:45687069-45687088 None:intergenic 25.0%
! TCAGATATTTGCATAAGAAA+CGG - chr1_4:45687097-45687116 None:intergenic 25.0%
! TAGAAAACAAAGTAAAAAGG+TGG + chr1_4:45687120-45687139 Msa0165250:intron 25.0%
! ATGTAGAAAGTAAAAACAAC+GGG - chr1_4:45687195-45687214 None:intergenic 25.0%
! AATCATATATTCATCTTGCA+AGG + chr1_4:45687622-45687641 Msa0165250:intron 25.0%
!!! TTGCTTTTGATAACAGAAAA+AGG + chr1_4:45687645-45687664 Msa0165250:intron 25.0%
! GTATAAATGTAAGTAAGAGT+AGG + chr1_4:45687793-45687812 Msa0165250:intron 25.0%
! TGCGAAATTAAAAGAGATAA+AGG - chr1_4:45687826-45687845 None:intergenic 25.0%
!!! AAATTGTCACTTTTGTTTTG+AGG + chr1_4:45687971-45687990 Msa0165250:intron 25.0%
! ATATGCACATGTATAAGTAA+GGG - chr1_4:45688355-45688374 None:intergenic 25.0%
! TATATGCACATGTATAAGTA+AGG - chr1_4:45688356-45688375 None:intergenic 25.0%
!!! TAAAGAAGCATTGAAAATTC+AGG + chr1_4:45688476-45688495 Msa0165250:three_prime_UTR 25.0%
! TTTCGCCTTTAATTACAAAT+TGG + chr1_4:45688587-45688606 Msa0165250:intron 25.0%
! TTCGCCTTTAATTACAAATT+GGG + chr1_4:45688588-45688607 Msa0165250:intron 25.0%
!! GTAGAAAAGATTTTCTGTTA+TGG - chr1_4:45688916-45688935 None:intergenic 25.0%
!!! TTCTGTTTTTGCATAAACAA+AGG + chr1_4:45689053-45689072 Msa0165250:intron 25.0%
! ACAGAAAATCTAATGTTGTT+CGG - chr1_4:45689166-45689185 None:intergenic 25.0%
! TCTAATAAAACTGATGTTTC+TGG - chr1_4:45689362-45689381 None:intergenic 25.0%
! ACTTTCATAAGTTGTAACAT+AGG + chr1_4:45689446-45689465 Msa0165250:three_prime_UTR 25.0%
! AAGATGATAATGAGCTTAGA+AGG + chr1_4:45681486-45681505 Msa0165250:CDS 30.0%
TGTTATGGGACAAAAAGTTA+TGG + chr1_4:45682100-45682119 Msa0165250:intron 30.0%
GTTATGGGACAAAAAGTTAT+GGG + chr1_4:45682101-45682120 Msa0165250:intron 30.0%
! GCCTTTGACTTAAAAAGTAA+TGG - chr1_4:45682200-45682219 None:intergenic 30.0%
!!! GGCACCCTATTTTTTATTTT+TGG + chr1_4:45682217-45682236 Msa0165250:intron 30.0%
CCTATGTTTCGTAAAACTAA+TGG - chr1_4:45682921-45682940 None:intergenic 30.0%
!!! CCATTAGTTTTACGAAACAT+AGG + chr1_4:45682918-45682937 Msa0165250:intron 30.0%
TAACCATACATTCACTAAGT+TGG + chr1_4:45683031-45683050 Msa0165250:intron 30.0%
TTTCCAACTTAGTGAATGTA+TGG - chr1_4:45683037-45683056 None:intergenic 30.0%
!! AGTTGGAAACATTTTGTTTG+AGG + chr1_4:45683048-45683067 Msa0165250:intron 30.0%
ATTAACCCTTCTTCCAAAAT+AGG + chr1_4:45683075-45683094 Msa0165250:intron 30.0%
!! CAATATCCTATTTTGGAAGA+AGG - chr1_4:45683084-45683103 None:intergenic 30.0%
! CAATGATTTGAGATTGTGAT+TGG - chr1_4:45683189-45683208 None:intergenic 30.0%
! CAAATCATTGTTCCATTTTG+CGG + chr1_4:45683199-45683218 Msa0165250:intron 30.0%
GAATAGAATAATCCGCAAAA+TGG - chr1_4:45683214-45683233 None:intergenic 30.0%
TTTGCAGGATCAGATATAAT+CGG + chr1_4:45683344-45683363 Msa0165250:intron 30.0%
TGACAGGGAAAAAATCAAAA+GGG - chr1_4:45683385-45683404 None:intergenic 30.0%
ATGACAGGGAAAAAATCAAA+AGG - chr1_4:45683386-45683405 None:intergenic 30.0%
ATAGCAAATAGAAACACTGT+TGG + chr1_4:45683473-45683492 Msa0165250:CDS 30.0%
AACAACTCGATTTAAACCAA+GGG + chr1_4:45683623-45683642 Msa0165250:three_prime_UTR 30.0%
TCCAAAATTGAAATATGTCC+GGG - chr1_4:45683752-45683771 None:intergenic 30.0%
CATCAAATAGCAGTTATAGT+GGG - chr1_4:45683906-45683925 None:intergenic 30.0%
TCATCAAATAGCAGTTATAG+TGG - chr1_4:45683907-45683926 None:intergenic 30.0%
ACAACATTAGACTAACAAGT+TGG - chr1_4:45684107-45684126 None:intergenic 30.0%
TTATATATACTTGAGCGAGT+TGG + chr1_4:45684168-45684187 Msa0165250:intron 30.0%
ATTTAATGAAGAAGGTCGTT+TGG + chr1_4:45684306-45684325 Msa0165250:three_prime_UTR 30.0%
ATACAGAAAAACTCACAAAC+AGG - chr1_4:45684414-45684433 None:intergenic 30.0%
! TGAGTTTTTCTGTATGTTTG+TGG + chr1_4:45684419-45684438 Msa0165250:intron 30.0%
! GAGTTTTTCTGTATGTTTGT+GGG + chr1_4:45684420-45684439 Msa0165250:intron 30.0%
AGAGTCACCATACAATTAAA+CGG - chr1_4:45684468-45684487 None:intergenic 30.0%
AGAAAAATGTCTGATGCAAA+TGG - chr1_4:45684530-45684549 None:intergenic 30.0%
! GACATTTTTCTATGTGAAAG+AGG + chr1_4:45684539-45684558 Msa0165250:intron 30.0%
AGGAAATAACCACAATGATT+AGG - chr1_4:45685048-45685067 None:intergenic 30.0%
ACAATCGCAGAAATAGAAAT+AGG - chr1_4:45685068-45685087 None:intergenic 30.0%
AATTCTCGTGTTGAAGTTAT+AGG + chr1_4:45685210-45685229 Msa0165250:intron 30.0%
ATTCTCGTGTTGAAGTTATA+GGG + chr1_4:45685211-45685230 Msa0165250:intron 30.0%
!!! CTCTTATTTTGACAAGCTAT+TGG - chr1_4:45685302-45685321 None:intergenic 30.0%
! CAATAGCTTGTCAAAATAAG+AGG + chr1_4:45685300-45685319 Msa0165250:intron 30.0%
!!! ATTTGTTTTGCTACTCAACT+AGG - chr1_4:45685563-45685582 None:intergenic 30.0%
ATACAAAATCCCTTCGAAAT+CGG - chr1_4:45685659-45685678 None:intergenic 30.0%
AGATTATTACGAGGAAACAT+GGG - chr1_4:45685869-45685888 None:intergenic 30.0%
AAGATTATTACGAGGAAACA+TGG - chr1_4:45685870-45685889 None:intergenic 30.0%
! TGATTTTTCTAATAGGCATC+TGG + chr1_4:45685894-45685913 Msa0165250:intron 30.0%
TTTACCAAAGAAGGATCTAT+TGG - chr1_4:45686132-45686151 None:intergenic 30.0%
GTCTTAATCTTTACCAAAGA+AGG - chr1_4:45686141-45686160 None:intergenic 30.0%
GTTTATTAACCAATGCTCTT+AGG - chr1_4:45686272-45686291 None:intergenic 30.0%
!! ATGTTCTATCGATTTATGCT+TGG + chr1_4:45686571-45686590 Msa0165250:three_prime_UTR 30.0%
! CTGTTCAGTTTGATAACATT+AGG + chr1_4:45686860-45686879 Msa0165250:intron 30.0%
! ATTTTTCCTCCTATCAAACA+AGG - chr1_4:45686956-45686975 None:intergenic 30.0%
TAAACAAGCTTTACATACCA+AGG - chr1_4:45687341-45687360 None:intergenic 30.0%
ATGCATGAGTAATAGTTTCA+TGG + chr1_4:45687374-45687393 Msa0165250:intron 30.0%
AAAAAAAAACTTCAACCACG+TGG - chr1_4:45687444-45687463 None:intergenic 30.0%
ACTAGTTAAAGTGACACTAA+TGG + chr1_4:45687480-45687499 Msa0165250:intron 30.0%
! TCATTTTACAACCGTTTCTT+AGG + chr1_4:45687503-45687522 Msa0165250:intron 30.0%
AGTTGAAAACTCCTAAGAAA+CGG - chr1_4:45687517-45687536 None:intergenic 30.0%
!!! TATCTCTTTTAATTTCGCAG+AGG + chr1_4:45687827-45687846 Msa0165250:intron 30.0%
CTGCAAAAGAAAATTCTCTT+CGG - chr1_4:45687905-45687924 None:intergenic 30.0%
GTGACAATTTATGTTGTCAA+AGG - chr1_4:45687961-45687980 None:intergenic 30.0%
!! TTGTTATTTACTGCAGTTGT+CGG - chr1_4:45688156-45688175 None:intergenic 30.0%
GAGAGAAAAATTGTAAAGAC+AGG + chr1_4:45688201-45688220 Msa0165250:three_prime_UTR 30.0%
AAACTATCTCTTCAGATCTT+GGG + chr1_4:45688417-45688436 Msa0165250:intron 30.0%
!!! TACATGCTTTTTTAGCATCA+AGG - chr1_4:45688458-45688477 None:intergenic 30.0%
! GATTTTCTGTAACGATATGA+TGG + chr1_4:45689176-45689195 Msa0165250:three_prime_UTR 30.0%
!! AAAGATTTAGAATCGACTTG+AGG - chr1_4:45689303-45689322 None:intergenic 30.0%
TAGATATTGCTGAGATTGTT+AGG + chr1_4:45689378-45689397 Msa0165250:three_prime_UTR 30.0%
AGATATTGCTGAGATTGTTA+GGG + chr1_4:45689379-45689398 Msa0165250:three_prime_UTR 30.0%
ATCAAGCACATTGCTAATCA+TGG + chr1_4:45681542-45681561 Msa0165250:CDS 35.0%
ACATTGCTAATCATGGTGAA+GGG + chr1_4:45681549-45681568 Msa0165250:CDS 35.0%
! GATTTGGGATTAAGAAAGAC+AGG + chr1_4:45681690-45681709 Msa0165250:intron 35.0%
!!! ATCTTAGTTTTTTTGGTGGC+CGG + chr1_4:45681779-45681798 Msa0165250:intron 35.0%
CATAATATATGCATGGTCTG+AGG - chr1_4:45681813-45681832 None:intergenic 35.0%
TCAATTGAGTTAAGCTCACA+AGG + chr1_4:45681844-45681863 Msa0165250:intron 35.0%
ATCGTAACACTGTTTACTGA+GGG - chr1_4:45682140-45682159 None:intergenic 35.0%
CATGCGAGTTTACAAACTAT+AGG - chr1_4:45682310-45682329 None:intergenic 35.0%
! GGAAAATTTTGCAGATTGTG+AGG - chr1_4:45683261-45683280 None:intergenic 35.0%
TACCTTTGCGATTTGTGAAA+TGG - chr1_4:45683289-45683308 None:intergenic 35.0%
TACTTTCTGTTTCCTCAACT+GGG + chr1_4:45683307-45683326 Msa0165250:intron 35.0%
GTATTCTTCAGAATCTTTGC+AGG + chr1_4:45683329-45683348 Msa0165250:intron 35.0%
AACACTGTTGGAATTGAAGA+AGG + chr1_4:45683485-45683504 Msa0165250:CDS 35.0%
! CTTGGTTTAAATCGAGTTGT+TGG - chr1_4:45683624-45683643 None:intergenic 35.0%
CAACAACTCGATTTAAACCA+AGG + chr1_4:45683622-45683641 Msa0165250:three_prime_UTR 35.0%
AAAAACAAAAGCTTCACCCT+TGG - chr1_4:45683642-45683661 None:intergenic 35.0%
! TCCCGGACATATTTCAATTT+TGG + chr1_4:45683748-45683767 Msa0165250:intron 35.0%
TCTCCAATTGTGAACTTCAT+TGG + chr1_4:45684022-45684041 Msa0165250:intron 35.0%
! GAAATATGAAGTGTCATAGC+AGG - chr1_4:45684074-45684093 None:intergenic 35.0%
TATACATTATTTCCGCAGTC+TGG + chr1_4:45684250-45684269 Msa0165250:intron 35.0%
AGACTTTAAGTGCAAGAAGA+TGG + chr1_4:45684275-45684294 Msa0165250:three_prime_UTR 35.0%
ATCGTTTATCATTGCATTGC+TGG + chr1_4:45684388-45684407 Msa0165250:intron 35.0%
AAAACACACAGCACATCAAA+TGG - chr1_4:45684590-45684609 None:intergenic 35.0%
CAAACAGTACATCTGAAGAA+CGG + chr1_4:45684854-45684873 Msa0165250:three_prime_UTR 35.0%
TGATTAGGACAAAAAGGCAA+TGG - chr1_4:45685033-45685052 None:intergenic 35.0%
CCACAATGATTAGGACAAAA+AGG - chr1_4:45685039-45685058 None:intergenic 35.0%
! CCTTTTTGTCCTAATCATTG+TGG + chr1_4:45685036-45685055 Msa0165250:intron 35.0%
CATAAACTTGATAGGAAGCA+TGG - chr1_4:45685152-45685171 None:intergenic 35.0%
CTTCCTATCAAGTTTATGCT+TGG + chr1_4:45685154-45685173 Msa0165250:intron 35.0%
TAATTGGGCTAAGGGATTAT+GGG - chr1_4:45685368-45685387 None:intergenic 35.0%
TTAATTGGGCTAAGGGATTA+TGG - chr1_4:45685369-45685388 None:intergenic 35.0%
AGAAACTAATCCGATTTCGA+AGG + chr1_4:45685646-45685665 Msa0165250:intron 35.0%
GAAACTAATCCGATTTCGAA+GGG + chr1_4:45685647-45685666 Msa0165250:intron 35.0%
! GAAGGGATTTTGTATAGTTC+AGG + chr1_4:45685664-45685683 Msa0165250:intron 35.0%
!!! TGGGTTTTTAGGATTCTGAT+CGG + chr1_4:45685736-45685755 Msa0165250:intron 35.0%
GATCGGGAATTTAACAACAA+CGG + chr1_4:45685753-45685772 Msa0165250:intron 35.0%
! TTTTTCTAATAGGCATCTGG+TGG + chr1_4:45685897-45685916 Msa0165250:intron 35.0%
! TTTTCTAATAGGCATCTGGT+GGG + chr1_4:45685898-45685917 Msa0165250:intron 35.0%
!!! TCTGGTGGGACAAATTTTTT+AGG + chr1_4:45685912-45685931 Msa0165250:intron 35.0%
!!! CTGGTGGGACAAATTTTTTA+GGG + chr1_4:45685913-45685932 Msa0165250:intron 35.0%
TAACAAATTTCCCACTACCA+AGG - chr1_4:45686080-45686099 None:intergenic 35.0%
CTGCAGTTATTACATCAGAT+TGG + chr1_4:45686186-45686205 Msa0165250:three_prime_UTR 35.0%
TCGGTTAAGGATTCCATAAA+AGG - chr1_4:45686376-45686395 None:intergenic 35.0%
TTTGTTAACGAGTGCCTTAA+GGG - chr1_4:45686401-45686420 None:intergenic 35.0%
! TTTTGTTAACGAGTGCCTTA+AGG - chr1_4:45686402-45686421 None:intergenic 35.0%
TTTCATAAAAGGCAAGTGCT+CGG - chr1_4:45686524-45686543 None:intergenic 35.0%
!! TCTATCGATTTATGCTTGGT+TGG + chr1_4:45686575-45686594 Msa0165250:three_prime_UTR 35.0%
! AATGATATTGGTTACGTGCA+AGG + chr1_4:45686600-45686619 Msa0165250:three_prime_UTR 35.0%
GAATGATATTTGCTCACCTT+TGG + chr1_4:45686715-45686734 Msa0165250:three_prime_UTR 35.0%
! AGAATGAAGCAGATTGCTTT+TGG + chr1_4:45686750-45686769 Msa0165250:three_prime_UTR 35.0%
CAAAGTGGCATGCTAATTAA+AGG - chr1_4:45687003-45687022 None:intergenic 35.0%
!! GCTTTAAAGGGAAAACAAAG+TGG - chr1_4:45687018-45687037 None:intergenic 35.0%
!! GGTCTATTTGGTTTGAGAAA+AGG - chr1_4:45687174-45687193 None:intergenic 35.0%
GTAAAAACAACGGGTCTATT+TGG - chr1_4:45687186-45687205 None:intergenic 35.0%
TGAAGTTCTCTCTCTGTTAT+GGG - chr1_4:45687230-45687249 None:intergenic 35.0%
ATAACAGAGAGAGAACTTCA+GGG + chr1_4:45687230-45687249 Msa0165250:intron 35.0%
AGTTGACATTGTAACCTCAA+GGG - chr1_4:45687544-45687563 None:intergenic 35.0%
TAGTTTCCGTAAACTTCCAT+GGG - chr1_4:45687587-45687606 None:intergenic 35.0%
AGTTGTTGTCTGTAGTTGTT+TGG + chr1_4:45687695-45687714 Msa0165250:intron 35.0%
GTTGTTGTCTGTAGTTGTTT+GGG + chr1_4:45687696-45687715 Msa0165250:intron 35.0%
TTGTTGTCTGTAGTTGTTTG+GGG + chr1_4:45687697-45687716 Msa0165250:intron 35.0%
AGGTAATGTCTCCCAATTAA+GGG - chr1_4:45687729-45687748 None:intergenic 35.0%
! ACCTTGTTTCAAATCTGTCT+CGG + chr1_4:45687752-45687771 Msa0165250:intron 35.0%
AATTTCGCAGAGGATTTAGA+TGG + chr1_4:45687837-45687856 Msa0165250:intron 35.0%
TTGCAGACACTTTGTATCTT+TGG + chr1_4:45687919-45687938 Msa0165250:three_prime_UTR 35.0%
TGCAGACACTTTGTATCTTT+GGG + chr1_4:45687920-45687939 Msa0165250:three_prime_UTR 35.0%
! TAGATTGTTTCCAGTTGATG+TGG + chr1_4:45688064-45688083 Msa0165250:intron 35.0%
! AGATTGTTTCCAGTTGATGT+GGG + chr1_4:45688065-45688084 Msa0165250:intron 35.0%
CGTACTTAGCAAAGATGTTT+GGG - chr1_4:45688104-45688123 None:intergenic 35.0%
TCGTACTTAGCAAAGATGTT+TGG - chr1_4:45688105-45688124 None:intergenic 35.0%
AAACATCTTTGCTAAGTACG+AGG + chr1_4:45688104-45688123 Msa0165250:three_prime_UTR 35.0%
! TGTTATTTACTGCAGTTGTC+GGG - chr1_4:45688155-45688174 None:intergenic 35.0%
AACAAAGTTCTGCAGCAATA+TGG + chr1_4:45688171-45688190 Msa0165250:three_prime_UTR 35.0%
TTCTTGAGACCAAGAATAAG+CGG + chr1_4:45688271-45688290 Msa0165250:three_prime_UTR 35.0%
GGTTAAAATCCGCTTATTCT+TGG - chr1_4:45688283-45688302 None:intergenic 35.0%
GAAACTATCTCTTCAGATCT+TGG + chr1_4:45688416-45688435 Msa0165250:intron 35.0%
!!! TTTTTTAGCATCAAGGCTTG+AGG - chr1_4:45688451-45688470 None:intergenic 35.0%
TCAGGAAAAATACCTGAACA+AGG + chr1_4:45688494-45688513 Msa0165250:three_prime_UTR 35.0%
GGAATGAAATTACCTTGTTC+AGG - chr1_4:45688509-45688528 None:intergenic 35.0%
CAATCAAACTGACACCAAAA+AGG - chr1_4:45688553-45688572 None:intergenic 35.0%
!!! CTTTTTGGTGTCAGTTTGAT+TGG + chr1_4:45688551-45688570 Msa0165250:intron 35.0%
AATCTAATGTTGTTCGGTCA+TGG - chr1_4:45689160-45689179 None:intergenic 35.0%
AAAGAAAATAATGGCCAGTC+AGG - chr1_4:45689242-45689261 None:intergenic 35.0%
GATATTGCTGAGATTGTTAG+GGG + chr1_4:45689380-45689399 Msa0165250:three_prime_UTR 35.0%
ATATTGCTGAGATTGTTAGG+GGG + chr1_4:45689381-45689400 Msa0165250:three_prime_UTR 35.0%
GATTAGCAATGTGCTTGATG+AGG - chr1_4:45681541-45681560 None:intergenic 40.0%
CACATTGCTAATCATGGTGA+AGG + chr1_4:45681548-45681567 Msa0165250:CDS 40.0%
TGAAGGGAGATGGAATTTCT+TGG + chr1_4:45681565-45681584 Msa0165250:CDS 40.0%
AATTTCTTGGCTACGAGTTC+AGG + chr1_4:45681578-45681597 Msa0165250:CDS 40.0%
!!! TCTTAGTTTTTTTGGTGGCC+GGG + chr1_4:45681780-45681799 Msa0165250:intron 40.0%
!! TGCTCTTAGAGAGCTTGTTA+TGG + chr1_4:45682085-45682104 Msa0165250:intron 40.0%
!! GCTCTTAGAGAGCTTGTTAT+GGG + chr1_4:45682086-45682105 Msa0165250:intron 40.0%
GATCGTAACACTGTTTACTG+AGG - chr1_4:45682141-45682160 None:intergenic 40.0%
! GACGATCTAGAGCAATTCAT+GGG - chr1_4:45682711-45682730 None:intergenic 40.0%
! AGACGATCTAGAGCAATTCA+TGG - chr1_4:45682712-45682731 None:intergenic 40.0%
ATTGTGAGGAAGAGAGAGAA+GGG - chr1_4:45683247-45683266 None:intergenic 40.0%
GCGATTTGTGAAATGGTGAA+TGG - chr1_4:45683282-45683301 None:intergenic 40.0%
CACCATTTCACAAATCGCAA+AGG + chr1_4:45683284-45683303 Msa0165250:intron 40.0%
GTACTTTCTGTTTCCTCAAC+TGG + chr1_4:45683306-45683325 Msa0165250:intron 40.0%
! TTCTGAAGAATACCCAGTTG+AGG - chr1_4:45683322-45683341 None:intergenic 40.0%
TGTGCAGAAAATGATCGTGA+TGG + chr1_4:45683446-45683465 Msa0165250:intron 40.0%
ACTGTTGGAATTGAAGAAGG+TGG + chr1_4:45683488-45683507 Msa0165250:CDS 40.0%
!! AAGGTGGAGTAGTTGATGAT+TGG + chr1_4:45683504-45683523 Msa0165250:CDS 40.0%
!! GAGTAGTTGATGATTGGTTG+TGG + chr1_4:45683510-45683529 Msa0165250:CDS 40.0%
!! TAGTTGATGATTGGTTGTGG+TGG + chr1_4:45683513-45683532 Msa0165250:CDS 40.0%
AGTGTTCTTATGATGCGTTC+TGG + chr1_4:45683543-45683562 Msa0165250:exon 40.0%
!! ACCCTCTAAGGTGAATAAGT+GGG + chr1_4:45683709-45683728 Msa0165250:intron 40.0%
TCCCACTTATTCACCTTAGA+GGG - chr1_4:45683713-45683732 None:intergenic 40.0%
TTCCCACTTATTCACCTTAG+AGG - chr1_4:45683714-45683733 None:intergenic 40.0%
AACCAGCCATTTGACAACAT+TGG + chr1_4:45683990-45684009 Msa0165250:intron 40.0%
TCACAGCCAATGTTGTCAAA+TGG - chr1_4:45683999-45684018 None:intergenic 40.0%
CCTCCAATGAAGTTCACAAT+TGG - chr1_4:45684028-45684047 None:intergenic 40.0%
CCAATTGTGAACTTCATTGG+AGG + chr1_4:45684025-45684044 Msa0165250:intron 40.0%
! TATATACTTGAGCGAGTTGG+TGG + chr1_4:45684171-45684190 Msa0165250:intron 40.0%
GTCTGATGCAAATGGAAGTT+GGG - chr1_4:45684522-45684541 None:intergenic 40.0%
TGTCTGATGCAAATGGAAGT+TGG - chr1_4:45684523-45684542 None:intergenic 40.0%
CAGCATAAGCACAAATCAGA+AGG - chr1_4:45684752-45684771 None:intergenic 40.0%
GTGTCCATCCTTCAATCAAA+GGG + chr1_4:45684797-45684816 Msa0165250:three_prime_UTR 40.0%
TGTCCATCCTTCAATCAAAG+GGG + chr1_4:45684798-45684817 Msa0165250:three_prime_UTR 40.0%
! TTCAATCAAAGGGGAGGTAT+GGG + chr1_4:45684807-45684826 Msa0165250:three_prime_UTR 40.0%
CGTTCTTCAGATGTACTGTT+TGG - chr1_4:45684856-45684875 None:intergenic 40.0%
GCACCAAGCATAAACTTGAT+AGG - chr1_4:45685160-45685179 None:intergenic 40.0%
!! GCTTGGTGCTTCATAGTATA+TGG + chr1_4:45685171-45685190 Msa0165250:intron 40.0%
GAGAATGGGAACAACAATGT+AGG + chr1_4:45685258-45685277 Msa0165250:intron 40.0%
ACACAGGGTTTCAGATAAAG+AGG + chr1_4:45685419-45685438 Msa0165250:intron 40.0%
CACAGGGTTTCAGATAAAGA+GGG + chr1_4:45685420-45685439 Msa0165250:intron 40.0%
ATTCTACTCACGATCCAGAT+CGG + chr1_4:45685687-45685706 Msa0165250:intron 40.0%
AGAGCAAAATCGCAAAATCG+TGG + chr1_4:45685716-45685735 Msa0165250:intron 40.0%
GAGCAAAATCGCAAAATCGT+GGG + chr1_4:45685717-45685736 Msa0165250:intron 40.0%
! TCGCAAAATCGTGGGTTTTT+AGG + chr1_4:45685725-45685744 Msa0165250:intron 40.0%
!!! GGGTTTTTAGGATTCTGATC+GGG + chr1_4:45685737-45685756 Msa0165250:intron 40.0%
CAGATAAGAAAGTTGTGCAG+TGG + chr1_4:45686163-45686182 Msa0165250:three_prime_UTR 40.0%
!! TTTTTAGGAGAACGCCAATG+AGG + chr1_4:45686244-45686263 Msa0165250:intron 40.0%
!! TTTTAGGAGAACGCCAATGA+GGG + chr1_4:45686245-45686264 Msa0165250:intron 40.0%
GCTTGGTTGGACAATGATAT+TGG + chr1_4:45686588-45686607 Msa0165250:three_prime_UTR 40.0%
GTTTAATCTCCATTTGAGGG+AGG + chr1_4:45686930-45686949 Msa0165250:intron 40.0%
CTGAAGTTCTCTCTCTGTTA+TGG - chr1_4:45687231-45687250 None:intergenic 40.0%
CATAACAGAGAGAGAACTTC+AGG + chr1_4:45687229-45687248 Msa0165250:intron 40.0%
! CCAAGGTGATGATGAAGTTT+GGG - chr1_4:45687324-45687343 None:intergenic 40.0%
! ACCAAGGTGATGATGAAGTT+TGG - chr1_4:45687325-45687344 None:intergenic 40.0%
! TGGAAGCATATGACTCTGAT+TGG - chr1_4:45687424-45687443 None:intergenic 40.0%
GAGTTGACATTGTAACCTCA+AGG - chr1_4:45687545-45687564 None:intergenic 40.0%
AGTTTCCGTAAACTTCCATG+GGG - chr1_4:45687586-45687605 None:intergenic 40.0%
GTAGTTTCCGTAAACTTCCA+TGG - chr1_4:45687588-45687607 None:intergenic 40.0%
CAGGTAATGTCTCCCAATTA+AGG - chr1_4:45687730-45687749 None:intergenic 40.0%
! CAGATTTGAAACAAGGTCTC+AGG - chr1_4:45687749-45687768 None:intergenic 40.0%
AGACACTTTGTATCTTTGGG+AGG + chr1_4:45687923-45687942 Msa0165250:three_prime_UTR 40.0%
! CTTTGTATCTTTGGGAGGTA+AGG + chr1_4:45687928-45687947 Msa0165250:intron 40.0%
! GATTGTTTCCAGTTGATGTG+GGG + chr1_4:45688066-45688085 Msa0165250:intron 40.0%
!!! GCTTTTGTTTTAGCACCATC+TGG - chr1_4:45688132-45688151 None:intergenic 40.0%
GTTATTTACTGCAGTTGTCG+GGG - chr1_4:45688154-45688173 None:intergenic 40.0%
! GTGCACTATTTTCTTCTGTG+CGG - chr1_4:45688227-45688246 None:intergenic 40.0%
CACAGAAGAAAATAGTGCAC+TGG + chr1_4:45688227-45688246 Msa0165250:three_prime_UTR 40.0%
!! GAATAAGCGGATTTTAACCG+AGG + chr1_4:45688284-45688303 Msa0165250:three_prime_UTR 40.0%
TAAGGGATGGAAAGAAAGAG+AGG - chr1_4:45688338-45688357 None:intergenic 40.0%
GCACATGTATAAGTAAGGGA+TGG - chr1_4:45688351-45688370 None:intergenic 40.0%
!! AGGTGATAAATGCTGCTTTC+AGG - chr1_4:45689486-45689505 None:intergenic 40.0%
ATGAGCTTAGAAGGAGACCT+TGG + chr1_4:45681495-45681514 Msa0165250:CDS 45.0%
TCATCCTCTTCAAGAGTCCA+AGG - chr1_4:45681515-45681534 None:intergenic 45.0%
CTAATCATGGTGAAGGGAGA+TGG + chr1_4:45681555-45681574 Msa0165250:CDS 45.0%
!! CTCTCTAAGAGCATTCGCAA+TGG - chr1_4:45682078-45682097 None:intergenic 45.0%
GATTGTGAGGAAGAGAGAGA+AGG - chr1_4:45683248-45683267 None:intergenic 45.0%
CTTTGCATTCTGGTCGAATG+GGG - chr1_4:45683593-45683612 None:intergenic 45.0%
GCTTTGCATTCTGGTCGAAT+GGG - chr1_4:45683594-45683613 None:intergenic 45.0%
AGCTTTGCATTCTGGTCGAA+TGG - chr1_4:45683595-45683614 None:intergenic 45.0%
GGAACATCAGCTTTGCATTC+TGG - chr1_4:45683603-45683622 None:intergenic 45.0%
AGCCAAAGTTTCACCCTCTA+AGG + chr1_4:45683697-45683716 Msa0165250:intron 45.0%
CACCTTAGAGGGTGAAACTT+TGG - chr1_4:45683702-45683721 None:intergenic 45.0%
!! CACCCTCTAAGGTGAATAAG+TGG + chr1_4:45683708-45683727 Msa0165250:intron 45.0%
GGTGAATAAGTGGGAATTCC+AGG + chr1_4:45683718-45683737 Msa0165250:intron 45.0%
GAATTCCAGGATTCGAATCC+CGG + chr1_4:45683731-45683750 Msa0165250:intron 45.0%
AGCCAATGTTGTCAAATGGC+TGG - chr1_4:45683995-45684014 None:intergenic 45.0%
CTTAAAGTCTTGCCAGACTG+CGG - chr1_4:45684265-45684284 None:intergenic 45.0%
!! TTCTGAGACGAATACAGCGA+GGG + chr1_4:45684341-45684360 Msa0165250:three_prime_UTR 45.0%
GGTGTCCATCCTTCAATCAA+AGG + chr1_4:45684796-45684815 Msa0165250:three_prime_UTR 45.0%
CATACCTCCCCTTTGATTGA+AGG - chr1_4:45684808-45684827 None:intergenic 45.0%
CTTCAATCAAAGGGGAGGTA+TGG + chr1_4:45684806-45684825 Msa0165250:three_prime_UTR 45.0%
GAGGTATGGGAGTTCTTACT+AGG + chr1_4:45684820-45684839 Msa0165250:three_prime_UTR 45.0%
AAAAAGGCAATGGCAACAGC+AGG - chr1_4:45685023-45685042 None:intergenic 45.0%
CAATGGTGCAGTAGTAGCAA+TGG - chr1_4:45685093-45685112 None:intergenic 45.0%
TGGGAACAACAATGTAGGCT+AGG + chr1_4:45685263-45685282 Msa0165250:intron 45.0%
GGGAACAACAATGTAGGCTA+GGG + chr1_4:45685264-45685283 Msa0165250:intron 45.0%
CAAAAGATAGTCCCAGTCCT+TGG + chr1_4:45686060-45686079 Msa0165250:three_prime_UTR 45.0%
ATTTCCCACTACCAAGGACT+GGG - chr1_4:45686074-45686093 None:intergenic 45.0%
AATTTCCCACTACCAAGGAC+TGG - chr1_4:45686075-45686094 None:intergenic 45.0%
TTTGTTACAACACCCCTCGT+CGG + chr1_4:45686093-45686112 Msa0165250:three_prime_UTR 45.0%
CCAAAGAAGGATCTATTGGC+TGG - chr1_4:45686128-45686147 None:intergenic 45.0%
CCAGCCAATAGATCCTTCTT+TGG + chr1_4:45686125-45686144 Msa0165250:three_prime_UTR 45.0%
ATCCTTAACCGATGCCCTTA+AGG + chr1_4:45686384-45686403 Msa0165250:intron 45.0%
CTCTCTCTGTTATGGGACAT+AGG - chr1_4:45687223-45687242 None:intergenic 45.0%
CCCAAACTTCATCATCACCT+TGG + chr1_4:45687321-45687340 Msa0165250:three_prime_UTR 45.0%
GACATTGTAACCTCAAGGGA+CGG - chr1_4:45687540-45687559 None:intergenic 45.0%
GATACCCCCATGGAAGTTTA+CGG + chr1_4:45687578-45687597 Msa0165250:intron 45.0%
GTTTCCGTAAACTTCCATGG+GGG - chr1_4:45687585-45687604 None:intergenic 45.0%
ATGTCTCCCAATTAAGGGAG+AGG - chr1_4:45687724-45687743 None:intergenic 45.0%
! GCCGAGACAGATTTGAAACA+AGG - chr1_4:45687756-45687775 None:intergenic 45.0%
TTCGCAGAGGATTTAGATGG+TGG + chr1_4:45687840-45687859 Msa0165250:intron 45.0%
TAACGATATGATGGCAGCTG+TGG + chr1_4:45689185-45689204 Msa0165250:three_prime_UTR 45.0%
!!! GATTTTAAATAAAATAATAA+GGG - chr1_4:45682582-45682601 None:intergenic 5.0%
!!! TGATTTTAAATAAAATAATA+AGG - chr1_4:45682583-45682602 None:intergenic 5.0%
!! AAATTATAATAAATTGTAAA+GGG - chr1_4:45682613-45682632 None:intergenic 5.0%
!! TAAATTATAATAAATTGTAA+AGG - chr1_4:45682614-45682633 None:intergenic 5.0%
!! AAAATAAAGATAAAAAAAAA+AGG - chr1_4:45685961-45685980 None:intergenic 5.0%
GAGACCTTGGACTCTTGAAG+AGG + chr1_4:45681508-45681527 Msa0165250:CDS 50.0%
! ATGGTCTGAGGTTCGAATCC+CGG - chr1_4:45681801-45681820 None:intergenic 50.0%
TATGTCCGGGATTCGAATCC+TGG - chr1_4:45683739-45683758 None:intergenic 50.0%
!! GTTCTGAGACGAATACAGCG+AGG + chr1_4:45684340-45684359 Msa0165250:three_prime_UTR 50.0%
! TCTGAGACGAATACAGCGAG+GGG + chr1_4:45684342-45684361 Msa0165250:three_prime_UTR 50.0%
CCTCCCCTTTGATTGAAGGA+TGG - chr1_4:45684804-45684823 None:intergenic 50.0%
CCATCCTTCAATCAAAGGGG+AGG + chr1_4:45684801-45684820 Msa0165250:three_prime_UTR 50.0%
ACTCACGATCCAGATCGGTA+AGG + chr1_4:45685692-45685711 Msa0165250:intron 50.0%
TTTGCTCTGCCTTACCGATC+TGG - chr1_4:45685704-45685723 None:intergenic 50.0%
ATAGTCCCAGTCCTTGGTAG+TGG + chr1_4:45686066-45686085 Msa0165250:three_prime_UTR 50.0%
! TAGTCCCAGTCCTTGGTAGT+GGG + chr1_4:45686067-45686086 Msa0165250:three_prime_UTR 50.0%
AATGCTCTTAGGGCCCTCAT+TGG - chr1_4:45686261-45686280 None:intergenic 50.0%
! AATGAGGGCCCTAAGAGCAT+TGG + chr1_4:45686260-45686279 Msa0165250:intron 50.0%
!! TGCCTTAAGGGCATCGGTTA+AGG - chr1_4:45686389-45686408 None:intergenic 50.0%
! AACGAGTGCCTTAAGGGCAT+CGG - chr1_4:45686395-45686414 None:intergenic 50.0%
CAAACAAGGCCTCCCTCAAA+TGG - chr1_4:45686942-45686961 None:intergenic 50.0%
!! TGAGGGAGGCCTTGTTTGAT+AGG + chr1_4:45686944-45686963 Msa0165250:intron 50.0%
CTCTGTTATGGGACATAGGC+AGG - chr1_4:45687219-45687238 None:intergenic 50.0%
GAGAGAGAACTTCAGGGTCA+CGG + chr1_4:45687236-45687255 Msa0165250:intron 50.0%
AGGGTCACGGCAACTTCAAT+GGG + chr1_4:45687249-45687268 Msa0165250:three_prime_UTR 50.0%
! AATGGGGGTGCAAACTCAGT+TGG + chr1_4:45687266-45687285 Msa0165250:three_prime_UTR 50.0%
! ATGGGGGTGCAAACTCAGTT+GGG + chr1_4:45687267-45687286 Msa0165250:three_prime_UTR 50.0%
CAGAGTCATATGCTTCCACG+TGG + chr1_4:45687426-45687445 Msa0165250:intron 50.0%
! GTTTTCAACTCCGTCCCTTG+AGG + chr1_4:45687527-45687546 Msa0165250:intron 50.0%
TTGGGGACCTCTCCCTTAAT+TGG + chr1_4:45687714-45687733 Msa0165250:intron 50.0%
TGGGGACCTCTCCCTTAATT+GGG + chr1_4:45687715-45687734 Msa0165250:intron 50.0%
CTTTGCGTTTCGCATGCTGA+TGG + chr1_4:45687872-45687891 Msa0165250:three_prime_UTR 50.0%
! TTTCCAGTTGATGTGGGGCA+TGG + chr1_4:45688071-45688090 Msa0165250:three_prime_UTR 50.0%
ATTCCATGCCCCACATCAAC+TGG - chr1_4:45688077-45688096 None:intergenic 50.0%
GCTAAGTACGAGGATCCAGA+TGG + chr1_4:45688114-45688133 Msa0165250:three_prime_UTR 50.0%
!! CGGATTTTAACCGAGGCCAA+GGG + chr1_4:45688291-45688310 Msa0165250:three_prime_UTR 50.0%
GACAACATCATCCACACCCT+TGG - chr1_4:45688310-45688329 None:intergenic 50.0%
GGGTGTGGATGATGTTGTCA+AGG + chr1_4:45688311-45688330 Msa0165250:three_prime_UTR 50.0%
GGAATGAGCTCAAGCAACGC+CGG + chr1_4:45684875-45684894 Msa0165250:three_prime_UTR 55.0%
! AGGAAGCATGGCCATCCAAG+AGG - chr1_4:45685140-45685159 None:intergenic 55.0%
CCACATATCATACTGCCCCC+TGG - chr1_4:45686028-45686047 None:intergenic 55.0%
CCAGGGGGCAGTATGATATG+TGG + chr1_4:45686025-45686044 Msa0165250:intron 55.0%
CTACCATCCTTCGCATCGCA+CGG - chr1_4:45686784-45686803 None:intergenic 55.0%
!! GGGAGGCCTTGTTTGATAGG+AGG + chr1_4:45686947-45686966 Msa0165250:intron 55.0%
CAGGGTCACGGCAACTTCAA+TGG + chr1_4:45687248-45687267 Msa0165250:three_prime_UTR 55.0%
GGGTCACGGCAACTTCAATG+GGG + chr1_4:45687250-45687269 Msa0165250:three_prime_UTR 55.0%
GGTCACGGCAACTTCAATGG+GGG + chr1_4:45687251-45687270 Msa0165250:three_prime_UTR 55.0%
TCGCTAAGCTGATACCCCCA+TGG + chr1_4:45687568-45687587 Msa0165250:intron 55.0%
!! GCGGATTTTAACCGAGGCCA+AGG + chr1_4:45688290-45688309 Msa0165250:three_prime_UTR 55.0%
TTTAACCGAGGCCAAGGGTG+TGG + chr1_4:45688296-45688315 Msa0165250:three_prime_UTR 55.0%
ATCATCCACACCCTTGGCCT+CGG - chr1_4:45688304-45688323 None:intergenic 55.0%
TGGTTGCGCATGATCTTCCC+AGG + chr1_4:45689205-45689224 Msa0165250:three_prime_UTR 55.0%
GTCAGGAGCAACTGAAGCCT+GGG - chr1_4:45689225-45689244 None:intergenic 55.0%
AGTCAGGAGCAACTGAAGCC+TGG - chr1_4:45689226-45689245 None:intergenic 55.0%
AGGCTTCAGTTGCTCCTGAC+TGG + chr1_4:45689225-45689244 Msa0165250:three_prime_UTR 55.0%
ATGAGCTCAAGCAACGCCGG+AGG + chr1_4:45684878-45684897 Msa0165250:three_prime_UTR 60.0%
ACACCCCTCGTCGGTGATGA+TGG + chr1_4:45686102-45686121 Msa0165250:three_prime_UTR 60.0%
TGGCCATCATCACCGACGAG+GGG - chr1_4:45686108-45686127 None:intergenic 60.0%
CTGGCCATCATCACCGACGA+GGG - chr1_4:45686109-45686128 None:intergenic 60.0%
GCTTTGACCGTGCGATGCGA+AGG + chr1_4:45686774-45686793 Msa0165250:three_prime_UTR 60.0%
TGACCGTGCGATGCGAAGGA+TGG + chr1_4:45686778-45686797 Msa0165250:three_prime_UTR 60.0%
CGTGCGATGCGAAGGATGGT+AGG + chr1_4:45686782-45686801 Msa0165250:intron 60.0%
GCTGGCCATCATCACCGACG+AGG - chr1_4:45686110-45686129 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 45681473 45689509 45681473 ID=Msa0165250;Name=Msa0165250
chr1_4 mRNA 45681473 45689509 45681473 ID=Msa0165250-mRNA-1;Parent=Msa0165250;Name=Msa0165250-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.90|0.91|0.91|0.81|0.83|12|1607|72
chr1_4 exon 45681473 45681599 45681473 ID=Msa0165250-mRNA-1:exon:13040;Parent=Msa0165250-mRNA-1
chr1_4 exon 45683453 45683644 45683453 ID=Msa0165250-mRNA-1:exon:13041;Parent=Msa0165250-mRNA-1
chr1_4 exon 45684268 45684363 45684268 ID=Msa0165250-mRNA-1:exon:13042;Parent=Msa0165250-mRNA-1
chr1_4 exon 45684796 45684899 45684796 ID=Msa0165250-mRNA-1:exon:13043;Parent=Msa0165250-mRNA-1
chr1_4 exon 45686029 45686207 45686029 ID=Msa0165250-mRNA-1:exon:13044;Parent=Msa0165250-mRNA-1
chr1_4 exon 45686499 45686621 45686499 ID=Msa0165250-mRNA-1:exon:13045;Parent=Msa0165250-mRNA-1
chr1_4 exon 45686711 45686799 45686711 ID=Msa0165250-mRNA-1:exon:13046;Parent=Msa0165250-mRNA-1
chr1_4 exon 45687237 45687342 45687237 ID=Msa0165250-mRNA-1:exon:13047;Parent=Msa0165250-mRNA-1
chr1_4 exon 45687847 45687944 45687847 ID=Msa0165250-mRNA-1:exon:13048;Parent=Msa0165250-mRNA-1
chr1_4 exon 45688067 45688332 45688067 ID=Msa0165250-mRNA-1:exon:13049;Parent=Msa0165250-mRNA-1
chr1_4 exon 45688432 45688515 45688432 ID=Msa0165250-mRNA-1:exon:13050;Parent=Msa0165250-mRNA-1
chr1_4 exon 45689148 45689509 45689148 ID=Msa0165250-mRNA-1:exon:13051;Parent=Msa0165250-mRNA-1
chr1_4 CDS 45681473 45681599 45681473 ID=Msa0165250-mRNA-1:cds;Parent=Msa0165250-mRNA-1
chr1_4 CDS 45683453 45683544 45683453 ID=Msa0165250-mRNA-1:cds;Parent=Msa0165250-mRNA-1
chr1_4 three_prime_UTR 45683545 45683644 45683545 ID=Msa0165250-mRNA-1:three_prime_utr;Parent=Msa0165250-mRNA-1
chr1_4 three_prime_UTR 45684268 45684363 45684268 ID=Msa0165250-mRNA-1:three_prime_utr;Parent=Msa0165250-mRNA-1
chr1_4 three_prime_UTR 45684796 45684899 45684796 ID=Msa0165250-mRNA-1:three_prime_utr;Parent=Msa0165250-mRNA-1
chr1_4 three_prime_UTR 45686029 45686207 45686029 ID=Msa0165250-mRNA-1:three_prime_utr;Parent=Msa0165250-mRNA-1
chr1_4 three_prime_UTR 45686499 45686621 45686499 ID=Msa0165250-mRNA-1:three_prime_utr;Parent=Msa0165250-mRNA-1
chr1_4 three_prime_UTR 45686711 45686799 45686711 ID=Msa0165250-mRNA-1:three_prime_utr;Parent=Msa0165250-mRNA-1
chr1_4 three_prime_UTR 45687237 45687342 45687237 ID=Msa0165250-mRNA-1:three_prime_utr;Parent=Msa0165250-mRNA-1
chr1_4 three_prime_UTR 45687847 45687944 45687847 ID=Msa0165250-mRNA-1:three_prime_utr;Parent=Msa0165250-mRNA-1
chr1_4 three_prime_UTR 45688067 45688332 45688067 ID=Msa0165250-mRNA-1:three_prime_utr;Parent=Msa0165250-mRNA-1
chr1_4 three_prime_UTR 45688432 45688515 45688432 ID=Msa0165250-mRNA-1:three_prime_utr;Parent=Msa0165250-mRNA-1
chr1_4 three_prime_UTR 45689148 45689509 45689148 ID=Msa0165250-mRNA-1:three_prime_utr;Parent=Msa0165250-mRNA-1
Gene Sequence

>Msa0165250

ATGTATACTAGTAAAGATGATAATGAGCTTAGAAGGAGACCTTGGACTCTTGAAGAGGATGATCTCCTCATCAAGCACATTGCTAATCATGGTGAAGGGAGATGGAATTTCTTGGCTACGAGTTCAGAAAATGATCGTGATGGATCTATAGCAAATAGAAACACTGTTGGAATTGAAGAAGGTGGAGTAGTTGATGATTGGTTGTGGTGGATTGTGTAG
Protein sequence

>Msa0165250

MYTSKDDNELRRRPWTLEEDDLLIKHIANHGEGRWNFLATSSENDRDGSIANRNTVGIEEGGVVDDWLWWIV*