AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0165590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0165590 MtrunA17_Chr1g0191361 92.850 951 23 1 1 951 1 906 0.0 1815
Msa0165590 MtrunA17_Chr1g0196371 57.673 782 269 16 3 757 2 748 0.0 845
Msa0165590 MtrunA17_Chr2g0319371 38.815 827 408 23 12 781 27 812 8.84e-158 488
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0165590 AT1G54710.1 53.605 957 387 16 4 951 18 926 0.0 889
Msa0165590 AT1G03380.1 53.261 828 320 17 1 789 1 800 0.0 782
Msa0165590 AT1G54710.2 52.118 850 353 15 111 951 1 805 0.0 766
Msa0165590 AT5G54730.1 33.972 783 400 24 1 753 1 696 9.53e-109 354
Msa0165590 AT5G54730.2 33.981 618 305 21 161 753 45 584 5.73e-85 287

Find 262 sgRNAs with CRISPR-Local

Find 566 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCGGTTGTGGCACAATTT+AGG 0.179862 1_4:+46221692 Msa0165590:CDS
TCTAGCAAGCATTTGGCTTC+TGG 0.212143 1_4:+46221231 Msa0165590:CDS
ACCTCAGATTTCTGCCAAAT+TGG 0.244250 1_4:-46222948 None:intergenic
GCTGATCAATCTTAGTGATA+TGG 0.272322 1_4:+46221254 Msa0165590:CDS
CCGCTGCTTGGTGATGTTGA+TGG 0.280443 1_4:-46221180 None:intergenic
ATCACAACCGTCTTCGTTAA+AGG 0.281183 1_4:+46218747 Msa0165590:five_prime_UTR
CTTATTTCAACCTCATTAAC+AGG 0.291043 1_4:-46223152 None:intergenic
AGCGGTTGTGGCACAATTTA+GGG 0.293715 1_4:+46221693 Msa0165590:CDS
AACGAGCAATTTCATAATCT+TGG 0.297757 1_4:-46226890 None:intergenic
TTGCTGGTTTATACTCCTTC+TGG 0.302626 1_4:+46222591 Msa0165590:CDS
CAGCATACGGTGGGTGGGTC+AGG 0.307450 1_4:+46225346 Msa0165590:CDS
GTTCTTGAAGCAGTTTCATT+TGG 0.318173 1_4:-46222657 None:intergenic
CTAGTTACAGCCTCAATTCA+TGG 0.319946 1_4:+46221766 Msa0165590:CDS
CTAGCAAGCATTTGGCTTCT+GGG 0.324176 1_4:+46221232 Msa0165590:CDS
CACTTATCCTGTGCCTCAGT+TGG 0.327207 1_4:+46221014 Msa0165590:CDS
GCGTATGCATTGTGCGAATC+AGG 0.330024 1_4:-46222546 None:intergenic
TCATGCCATGGAACACTTGC+TGG 0.331523 1_4:+46222575 Msa0165590:CDS
GCAGGCACGGCCGTGGTAGA+TGG 0.334245 1_4:+46225380 Msa0165590:CDS
GGAAACTGCTGAAATGATAT+TGG 0.334443 1_4:+46222818 Msa0165590:CDS
TGGAAGATGCCTCTAATATC+AGG 0.335031 1_4:+46220284 Msa0165590:CDS
GTCGGCAGGGACGGAATTCC+CGG 0.336411 1_4:+46218901 Msa0165590:five_prime_UTR
GGAATGGTTGGGGTTAATAT+TGG 0.344344 1_4:+46221045 Msa0165590:CDS
CAGCCTGAATTCGGTGATAC+AGG 0.346522 1_4:-46221333 None:intergenic
CGCTGCTTGGTGATGTTGAT+GGG 0.347448 1_4:-46221179 None:intergenic
TCCCCTGTATCACCGAATTC+AGG 0.357654 1_4:+46221330 Msa0165590:CDS
TGATTCCATAAAACTTAATC+AGG 0.358708 1_4:+46222878 Msa0165590:CDS
AATTGTCAGAGGCATTGTTC+TGG 0.359360 1_4:+46224128 Msa0165590:intron
GACAAGTTCCCTGATATTAG+AGG 0.368128 1_4:-46220293 None:intergenic
TTAGGTGTCTTTCTTTGTGA+TGG 0.368906 1_4:+46223058 Msa0165590:intron
ACTCCGGGAGGATACCAATT+TGG 0.373742 1_4:+46222934 Msa0165590:CDS
TGCTTTGGGCTTGCTTTGAC+AGG 0.379869 1_4:+46220188 Msa0165590:CDS
TGCTAGATTCCATAGCATAT+CGG 0.384870 1_4:-46221215 None:intergenic
CGACGGAGGCGCCGGCAGTT+CGG 0.385134 1_4:-46219064 None:intergenic
CCGCGACTTTCGTCGTCGGC+AGG 0.386720 1_4:+46218887 Msa0165590:five_prime_UTR
TTGGGTGGGCAAGGAATGGT+TGG 0.394175 1_4:+46221033 Msa0165590:CDS
AGAAGCAGCGACGGAGGCGC+CGG 0.397817 1_4:-46219072 None:intergenic
CTAACTTTCCAGCCTGAATT+CGG 0.399263 1_4:-46221342 None:intergenic
AGAAAGAAAAGCAGGAGGTT+GGG 0.404547 1_4:-46222394 None:intergenic
GACTTGTGTTTAACAACAAT+GGG 0.406696 1_4:-46221119 None:intergenic
TCAAAACATAGCGCAGATAT+AGG 0.408648 1_4:-46221727 None:intergenic
GCTACCAGGTTTCCGCTGCT+TGG 0.417730 1_4:-46221192 None:intergenic
TAGGTGTCTTTCTTTGTGAT+GGG 0.424566 1_4:+46223059 Msa0165590:intron
TGGGTGGGCAAGGAATGGTT+GGG 0.424586 1_4:+46221034 Msa0165590:CDS
ATTGTGAAAATTATAGTGTT+GGG 0.425168 1_4:+46222850 Msa0165590:CDS
AATTGTGAAAATTATAGTGT+TGG 0.429375 1_4:+46222849 Msa0165590:CDS
GGCCACCACCGGTGAGTGAC+CGG 0.430899 1_4:-46218920 None:intergenic
TTCAGTCCACTTGGGGTGAC+AGG 0.431138 1_4:+46223216 Msa0165590:CDS
GCCGCGATTCTGCTATGCTT+TGG 0.433374 1_4:-46218703 None:intergenic
AGCATCACATCCTTTACTCT+TGG 0.434935 1_4:+46220393 Msa0165590:CDS
GCAGGAGGAGTCGGACTTTG+AGG 0.438368 1_4:-46221150 None:intergenic
AATGTTTCATCTTCTGCAGC+AGG 0.443523 1_4:+46222468 Msa0165590:CDS
ATTGTCAGAGGCATTGTTCT+GGG 0.446262 1_4:+46224129 Msa0165590:intron
TCCTCCGGCGTCCGAACTGC+CGG 0.446318 1_4:+46219053 Msa0165590:CDS
CGGGTTCTCAAAGCAATGAT+TGG 0.446623 1_4:+46221839 Msa0165590:CDS
TAACCTACTATCGTCATTGA+TGG 0.448610 1_4:+46222629 Msa0165590:CDS
TATGGAATCTAGCAAGCATT+TGG 0.451298 1_4:+46221224 Msa0165590:CDS
CTGATCAATCTTAGTGATAT+GGG 0.453531 1_4:+46221255 Msa0165590:CDS
ATTCGGTGATACAGGGGAAC+TGG 0.455908 1_4:-46221325 None:intergenic
CTCTATTTCAATCTCCCCAT+TGG 0.457148 1_4:-46223123 None:intergenic
TTAACTGTACCTGGCTTTGT+GGG 0.458457 1_4:+46224231 Msa0165590:CDS
AAGCAGGAGGTTGGGGTGGG+TGG 0.460095 1_4:-46222386 None:intergenic
CAATGGGGAGATTGAAATAG+AGG 0.461586 1_4:+46223124 Msa0165590:CDS
CGACTTGTGTTTAACAACAA+TGG 0.461697 1_4:-46221120 None:intergenic
AGAAAAGCAGGAGGTTGGGG+TGG 0.461895 1_4:-46222390 None:intergenic
CATCCGAAGTTAACTGTACC+TGG 0.462498 1_4:+46224222 Msa0165590:CDS
CACAAAATTCAGTCCACTTG+GGG 0.463372 1_4:+46223209 Msa0165590:CDS
ACTTATCCTGTGCCTCAGTT+GGG 0.463385 1_4:+46221015 Msa0165590:CDS
GTTAACTGTACCTGGCTTTG+TGG 0.465939 1_4:+46224230 Msa0165590:CDS
ATTGTAGCAGTCCCTCTGGC+AGG 0.468310 1_4:+46226272 Msa0165590:CDS
AGACCCACAGCGACTATTTG+AGG 0.470535 1_4:-46220598 None:intergenic
GCTAGATTCCATAGCATATC+GGG 0.471561 1_4:-46221214 None:intergenic
GTGCCTCAGTTGGGTGGGCA+AGG 0.473182 1_4:+46221024 Msa0165590:CDS
AGGTGGCAGCATACGGTGGG+TGG 0.473438 1_4:+46225340 Msa0165590:CDS
TTTACGATCGGTTCCATCGC+CGG 0.473917 1_4:-46219099 None:intergenic
GGTGGCAAAGCTGTTGATGC+TGG 0.477418 1_4:-46222368 None:intergenic
GGGGAGTACACCTGGTGGAC+TGG 0.477946 1_4:+46222797 Msa0165590:CDS
AGAACTGTCTCACCACCAAA+AGG 0.478321 1_4:-46222258 None:intergenic
CCATAGCATATCGGGCTACC+AGG 0.479379 1_4:-46221206 None:intergenic
AGAAGATTTACGAGTGAAAG+TGG 0.482850 1_4:+46222710 Msa0165590:CDS
CAGACATCCCACCATTGAAC+AGG 0.484714 1_4:-46222735 None:intergenic
GAAAGAAAAGCAGGAGGTTG+GGG 0.484867 1_4:-46222393 None:intergenic
ATCGAGAACTTGAAATCCAT+TGG 0.485519 1_4:-46220260 None:intergenic
TCCTACTCAAAGAAAGGATC+GGG 0.486675 1_4:+46221820 Msa0165590:CDS
TTTCAGATTCGTACCTTCCT+CGG 0.487984 1_4:-46226353 None:intergenic
TATCCTGTGCCTCAGTTGGG+TGG 0.488213 1_4:+46221018 Msa0165590:CDS
TCCACAAAATTCAGTCCACT+TGG 0.488720 1_4:+46223207 Msa0165590:CDS
TCAGTTGGGTGGGCAAGGAA+TGG 0.489898 1_4:+46221029 Msa0165590:CDS
CTGCCATCAATGACGATAGT+AGG 0.491239 1_4:-46222632 None:intergenic
ATTCCGTTCAACTGTCTACA+TGG 0.494684 1_4:+46220564 Msa0165590:CDS
TCCCGGTCACTCACCGGTGG+TGG 0.495181 1_4:+46218918 Msa0165590:five_prime_UTR
AGATGGCCACAACGAAGCTC+AGG 0.495493 1_4:+46220465 Msa0165590:CDS
AGAGTTTATAGAGTGGAGGA+AGG 0.496618 1_4:+46226860 Msa0165590:intron
CCACAAAATTCAGTCCACTT+GGG 0.496716 1_4:+46223208 Msa0165590:CDS
GTTTAACAACAATGGGTTGT+TGG 0.498232 1_4:-46221112 None:intergenic
ACTTTCGTCGTCGGCAGGGA+CGG 0.498434 1_4:+46218892 Msa0165590:five_prime_UTR
CTCCTACTCGGTTATTCCAA+TGG 0.498897 1_4:+46220244 Msa0165590:CDS
AGGAACGAATCCATTGCTCT+TGG 0.500705 1_4:-46218991 None:intergenic
TGCATTAAGACGGCTTCCTC+CGG 0.501805 1_4:+46219038 Msa0165590:CDS
GGTCAGGCAACAATGGTGGC+AGG 0.504459 1_4:+46225362 Msa0165590:CDS
GGGTGGGCAAGGAATGGTTG+GGG 0.508582 1_4:+46221035 Msa0165590:CDS
ATGCCTTCCTACTCAAAGAA+AGG 0.510586 1_4:+46221814 Msa0165590:CDS
GTCCGATGGCTGTAGGGCCA+CGG 0.511127 1_4:+46221073 Msa0165590:CDS
TGGAACCGATCGTAAAGATC+AGG 0.512333 1_4:+46219106 Msa0165590:CDS
CAGGTACAGTTAACTTCGGA+TGG 0.512564 1_4:-46224221 None:intergenic
GAACTGTCTCACCACCAAAA+GGG 0.513131 1_4:-46222257 None:intergenic
GGCAACAATGGTGGCAGGCA+CGG 0.513684 1_4:+46225367 Msa0165590:CDS
TAATGCCGGATGGCTTAATA+CGG 0.513868 1_4:+46222440 Msa0165590:CDS
TGCTTTGACAGGCTAGAGCT+CGG 0.514606 1_4:+46220199 Msa0165590:CDS
AGAGTTGAAGACGACGGAGT+TGG 0.515686 1_4:-46218839 None:intergenic
GTTGGGGTTAATATTGGCTA+TGG 0.515823 1_4:+46221051 Msa0165590:CDS
GGCTATGGTCCGATGGCTGT+AGG 0.516684 1_4:+46221066 Msa0165590:CDS
AATGGTGGCAGGCACGGCCG+TGG 0.520777 1_4:+46225373 Msa0165590:CDS
CAGAAAGAAAAGCAGGAGGT+TGG 0.520924 1_4:-46222395 None:intergenic
GAAATGAACTTGAAAGAAGA+AGG 0.522169 1_4:-46219011 None:intergenic
TTAGAGCATGAACATAGGTA+TGG 0.523088 1_4:-46220540 None:intergenic
GGGAAAGTCTCAGTTCCATC+TGG 0.523092 1_4:+46222489 Msa0165590:CDS
TGCCCACCCAACTGAGGCAC+AGG 0.523609 1_4:-46221021 None:intergenic
CACCGTGGCCCTACAGCCAT+CGG 0.523773 1_4:-46221075 None:intergenic
AAATGTTAGGTGGCAGCATA+CGG 0.526062 1_4:+46225333 Msa0165590:CDS
ATCCTGTGCCTCAGTTGGGT+GGG 0.527851 1_4:+46221019 Msa0165590:CDS
TGAGGTTGAAATAAGACAGA+AGG 0.528495 1_4:+46223160 Msa0165590:CDS
ATCACCAAGCAGCGGAAACC+TGG 0.529348 1_4:+46221188 Msa0165590:CDS
TCCGTCGCTGCTTCTATCTC+CGG 0.530686 1_4:+46219080 Msa0165590:CDS
TCTATATCGGGGAGTACACC+TGG 0.530880 1_4:+46222789 Msa0165590:CDS
CTCTGATGGTATAGCTACAA+AGG 0.532244 1_4:+46226060 Msa0165590:CDS
GCCTCTCCCTGCAAAAGCAG+AGG 0.532861 1_4:+46220354 Msa0165590:CDS
ACAGGGGAACTGGATCCATC+AGG 0.534199 1_4:-46221315 None:intergenic
AGTTCTTAAGATACACAATC+AGG 0.535021 1_4:+46222275 Msa0165590:CDS
TTGTGGAAATGATCAAGGAC+GGG 0.536944 1_4:-46223191 None:intergenic
CCTGGTAGCCCGATATGCTA+TGG 0.538012 1_4:+46221206 Msa0165590:CDS
AAATCTTCTTCTTGTATCTG+TGG 0.538300 1_4:-46222696 None:intergenic
CTGTATCACCGAATTCAGGC+TGG 0.539993 1_4:+46221334 Msa0165590:CDS
TTCAAACGTGTACTCCTACT+CGG 0.540235 1_4:+46220232 Msa0165590:CDS
AGAGGATATTCCTGTTAATG+AGG 0.541213 1_4:+46223142 Msa0165590:CDS
TCAGCAGTTTCCAGTCCACC+AGG 0.541618 1_4:-46222807 None:intergenic
CTTTAGAGTTTATAGAGTGG+AGG 0.541673 1_4:+46226856 Msa0165590:intron
GATGTTGATGGGCTGACAGC+AGG 0.541983 1_4:-46221168 None:intergenic
CTGCCAAATTGGTATCCTCC+CGG 0.543872 1_4:-46222937 None:intergenic
CGCGACTTTCGTCGTCGGCA+GGG 0.546160 1_4:+46218888 Msa0165590:five_prime_UTR
TTTCTTTAGAGTTTATAGAG+TGG 0.546871 1_4:+46226853 Msa0165590:intron
GAAAAGCAGGAGGTTGGGGT+GGG 0.546994 1_4:-46222389 None:intergenic
TAACAACAATGGGTTGTTGG+AGG 0.547432 1_4:-46221109 None:intergenic
CGACATTATCGAAAATGTGT+GGG 0.547590 1_4:+46218638 Msa0165590:five_prime_UTR
AGCCTGAATTCGGTGATACA+GGG 0.548808 1_4:-46221332 None:intergenic
GCTATGGTCCGATGGCTGTA+GGG 0.549410 1_4:+46221067 Msa0165590:CDS
ATATTTGACTTCTCCGAGGA+AGG 0.549457 1_4:+46226340 Msa0165590:CDS
TCTTCTTGTATCTGTGGTGA+AGG 0.550396 1_4:-46222690 None:intergenic
AGAAACAGATGCGGCTGGAG+TGG 0.550843 1_4:+46221386 Msa0165590:CDS
GCAAAAGCAGAGGGCTGTGA+AGG 0.551367 1_4:+46220364 Msa0165590:CDS
AATATGACAAGTTCCCTTGG+AGG 0.552210 1_4:-46222223 None:intergenic
CGGAATTCCCGGTCACTCAC+CGG 0.552380 1_4:+46218912 Msa0165590:five_prime_UTR
CTGTTAGATTCTACTCACTA+AGG 0.552645 1_4:+46220515 Msa0165590:CDS
GTGGATTGTAGCAGTCCCTC+TGG 0.554454 1_4:+46226268 Msa0165590:CDS
TATCAAGATCTAATGCCTGA+TGG 0.555177 1_4:+46221300 Msa0165590:CDS
TTCCTACTCAAAGAAAGGAT+CGG 0.557533 1_4:+46221819 Msa0165590:CDS
GCTGCTTCTATCTCCGGCGA+TGG 0.557714 1_4:+46219086 Msa0165590:CDS
GGGCTGACAGCAGGAGGAGT+CGG 0.558059 1_4:-46221159 None:intergenic
GGTGCCTCAAATTTCTCTGA+TGG 0.559962 1_4:+46226046 Msa0165590:CDS
TATACCATCAGAGAAATTTG+AGG 0.562160 1_4:-46226050 None:intergenic
TTCGGTTATTTGAGTTGTGG+TGG 0.562449 1_4:-46218785 None:intergenic
CCTCTCCCTGCAAAAGCAGA+GGG 0.565243 1_4:+46220355 Msa0165590:CDS
CATGCAACAACCAAGAGTAA+AGG 0.565496 1_4:-46220403 None:intergenic
CAGAGGTGCATATAAACTCC+GGG 0.565872 1_4:+46222919 Msa0165590:CDS
TCTACAGAAACAGATGCGGC+TGG 0.565883 1_4:+46221381 Msa0165590:CDS
TGCTACCTGATCTTTACGAT+CGG 0.565956 1_4:-46219111 None:intergenic
GGAGTGAACCACCATGGTAG+AGG 0.566226 1_4:-46222330 None:intergenic
ACGACGGAGTTGGCCGTGCA+CGG 0.566507 1_4:-46218829 None:intergenic
AATTTGACCTTTAACGAAGA+CGG 0.566522 1_4:-46218754 None:intergenic
GGTGGCAGCATACGGTGGGT+GGG 0.567559 1_4:+46225341 Msa0165590:CDS
GGCACGGCCGTGGTAGATGG+TGG 0.571144 1_4:+46225383 Msa0165590:CDS
GGTTGCCGTCATTTCCTCCA+AGG 0.572748 1_4:+46222209 Msa0165590:CDS
CTAACCACAGAAAGAAAAGC+AGG 0.573795 1_4:-46222402 None:intergenic
GCCACCACCGGTGAGTGACC+GGG 0.574100 1_4:-46218919 None:intergenic
GGTGGGTCAGGCAACAATGG+TGG 0.575016 1_4:+46225358 Msa0165590:CDS
GTGGGTGGGTCAGGCAACAA+TGG 0.575715 1_4:+46225355 Msa0165590:CDS
CATTTCGTCTTGCATTAAGA+CGG 0.575776 1_4:+46219028 Msa0165590:CDS
GATCCTTTCTTTGAGTAGGA+AGG 0.577226 1_4:-46221817 None:intergenic
ATCAGATTTCTCCCTGCCAG+AGG 0.577582 1_4:-46226284 None:intergenic
AACTGTCTCACCACCAAAAG+GGG 0.579524 1_4:-46222256 None:intergenic
GCAGAGGTGCATATAAACTC+CGG 0.580890 1_4:+46222918 Msa0165590:CDS
ACTAACCGTATTAAGCCATC+CGG 0.582236 1_4:-46222445 None:intergenic
TGCCACGGTGGAGCTTGTAA+AGG 0.583238 1_4:-46221879 None:intergenic
CGTTCCGCGACTTTCGTCGT+CGG 0.585286 1_4:+46218883 Msa0165590:five_prime_UTR
GTGTTCGGTTATTTGAGTTG+TGG 0.585857 1_4:-46218788 None:intergenic
CTGTTACCTGTCACCCCAAG+TGG 0.588510 1_4:-46223222 None:intergenic
TAATATTGGCTATGGTCCGA+TGG 0.588529 1_4:+46221059 Msa0165590:CDS
TCAGATTTCTCCCTGCCAGA+GGG 0.589490 1_4:-46226283 None:intergenic
TACTGAATTAAGTGACCAGA+AGG 0.590764 1_4:-46222606 None:intergenic
AGCAGAAGTTACTACTGATG+TGG 0.591016 1_4:+46226249 Msa0165590:CDS
TTTCAGCCTGAGCTTCGTTG+TGG 0.591381 1_4:-46220471 None:intergenic
GGAGATAGAAGCAGCGACGG+AGG 0.591766 1_4:-46219078 None:intergenic
TAGAGCATGAACATAGGTAT+GGG 0.591981 1_4:-46220539 None:intergenic
GGCGCCGGCAGTTCGGACGC+CGG 0.593055 1_4:-46219057 None:intergenic
TTTGTGGAAATGATCAAGGA+CGG 0.594219 1_4:-46223192 None:intergenic
CGCAGATATAGGACTAGTGT+GGG 0.595109 1_4:-46221716 None:intergenic
CAGTCCTCAAATAGTCGCTG+TGG 0.595369 1_4:+46220594 Msa0165590:CDS
ATAAACCAGCAAGTGTTCCA+TGG 0.597706 1_4:-46222580 None:intergenic
TGAAAGTGGAACCTGTTCAA+TGG 0.597917 1_4:+46222724 Msa0165590:CDS
GTTGCCGTCATTTCCTCCAA+GGG 0.598398 1_4:+46222210 Msa0165590:CDS
AGTCGCGGAACGCAGTCGAT+CGG 0.599963 1_4:-46218872 None:intergenic
ACGACATTATCGAAAATGTG+TGG 0.601636 1_4:+46218637 Msa0165590:five_prime_UTR
TTGTAGCAGTCCCTCTGGCA+GGG 0.602924 1_4:+46226273 Msa0165590:CDS
ACAGCAGAAACAGCACCAGA+TGG 0.603039 1_4:-46222504 None:intergenic
TGTTAGGTGGCAGCATACGG+TGG 0.606311 1_4:+46225336 Msa0165590:CDS
AGTTCCCTTGGAGGAAATGA+CGG 0.606767 1_4:-46222214 None:intergenic
GATGTTATTACCATGAATTG+AGG 0.608809 1_4:-46221776 None:intergenic
ATGTTTCATCTTCTGCAGCA+GGG 0.610620 1_4:+46222469 Msa0165590:CDS
GCGCAGATATAGGACTAGTG+TGG 0.613791 1_4:-46221717 None:intergenic
ACAGTGCAAAATGTCAGAGA+TGG 0.618661 1_4:+46220448 Msa0165590:CDS
AACAACGGTTCCAAGAGCAA+TGG 0.619032 1_4:+46218981 Msa0165590:CDS
GAATCTTAGAGCATGAACAT+AGG 0.620118 1_4:-46220545 None:intergenic
GGTGATAATGATGACATGCT+TGG 0.621093 1_4:+46226313 Msa0165590:CDS
GTTAGGTGGCAGCATACGGT+GGG 0.621890 1_4:+46225337 Msa0165590:CDS
ACCAATTTGGCAGAAATCTG+AGG 0.621938 1_4:+46222947 Msa0165590:CDS
GGAAGATGCCTCTAATATCA+GGG 0.623650 1_4:+46220285 Msa0165590:CDS
AACACAAATGAGGTTTCAGT+AGG 0.626661 1_4:+46226025 Msa0165590:intron
GCCGGAGATAGAAGCAGCGA+CGG 0.627399 1_4:-46219081 None:intergenic
GCCGGCAGTTCGGACGCCGG+AGG 0.628097 1_4:-46219054 None:intergenic
TCTCACCACCAAAAGGGGAA+AGG 0.628650 1_4:-46222251 None:intergenic
ACCCGATCCTTTCTTTGAGT+AGG 0.631333 1_4:-46221821 None:intergenic
AGGGAGAAATCTGATGAAGA+TGG 0.631588 1_4:+46226292 Msa0165590:CDS
TAACCATGTAGACAGTTGAA+CGG 0.635643 1_4:-46220567 None:intergenic
AAGTGGAACCTGTTCAATGG+TGG 0.635842 1_4:+46222727 Msa0165590:CDS
ATGTCTGTAGAAGATATGAT+TGG 0.636891 1_4:+46222751 Msa0165590:CDS
ATACACAATCAGGACACAGA+AGG 0.639988 1_4:+46222285 Msa0165590:CDS
ATTCCTTGCCCACCCAACTG+AGG 0.642669 1_4:-46221027 None:intergenic
AAGCCAGGTACAGTTAACTT+CGG 0.644189 1_4:-46224225 None:intergenic
AGTCCTCAAATAGTCGCTGT+GGG 0.644493 1_4:+46220595 Msa0165590:CDS
TGCTGGTTTACAGTAAAATG+TGG 0.645882 1_4:-46222351 None:intergenic
AGGTACAGTTAACTTCGGAT+GGG 0.646044 1_4:-46224220 None:intergenic
TGGATTTCAAGTTCTCGATG+TGG 0.646580 1_4:+46220264 Msa0165590:CDS
TGTGATAAATCAAAGATACC+TGG 0.646678 1_4:+46220424 Msa0165590:CDS
ACCAAAGCATAGCAGAATCG+CGG 0.648729 1_4:+46218702 Msa0165590:five_prime_UTR
GCCTGAATTCGGTGATACAG+GGG 0.657469 1_4:-46221331 None:intergenic
TTGTCACGTCTCAAATGCAG+AGG 0.660933 1_4:+46222902 Msa0165590:CDS
ATCCATTGGAATAACCGAGT+AGG 0.661164 1_4:-46220246 None:intergenic
AATTCCCGGTCACTCACCGG+TGG 0.662119 1_4:+46218915 Msa0165590:five_prime_UTR
TGCATAAGAGTTGAAGACGA+CGG 0.663554 1_4:-46218845 None:intergenic
CGATGGCTGTAGGGCCACGG+TGG 0.664390 1_4:+46221076 Msa0165590:CDS
ATCGTGTAGATGAAGAAACA+AGG 0.665373 1_4:+46218951 Msa0165590:exon
AGTGGAACCTGTTCAATGGT+GGG 0.666683 1_4:+46222728 Msa0165590:CDS
AAGGTTAAATCATCAGAACA+TGG 0.666854 1_4:+46226079 Msa0165590:CDS
CCTGCCGACGACGAAAGTCG+CGG 0.667594 1_4:-46218887 None:intergenic
TATGCATTGTGCGAATCAGG+AGG 0.673488 1_4:-46222543 None:intergenic
GACATTATCGAAAATGTGTG+GGG 0.676520 1_4:+46218639 Msa0165590:five_prime_UTR
GTTGCTGCCACCATCTACCA+CGG 0.678399 1_4:-46225390 None:intergenic
CCATCAACATCACCAAGCAG+CGG 0.680372 1_4:+46221180 Msa0165590:CDS
ATACGCAAAAGTTCATGCCA+TGG 0.683570 1_4:+46222563 Msa0165590:CDS
AAATGTGGAGTGAACCACCA+TGG 0.691383 1_4:-46222336 None:intergenic
ACGGAGTTGGCCGTGCACGG+CGG 0.691410 1_4:-46218826 None:intergenic
AAATTCTACAGAAACAGATG+CGG 0.692764 1_4:+46221377 Msa0165590:CDS
ATACTGCGGATGTCATGCCA+CGG 0.696634 1_4:-46221894 None:intergenic
GAATATGCATGTTACTTGTG+AGG 0.697394 1_4:+46226147 Msa0165590:CDS
AAACAAGGAAAGAACAACAA+CGG 0.698484 1_4:+46218966 Msa0165590:CDS
CTGCGGATGTCATGCCACGG+TGG 0.707398 1_4:-46221891 None:intergenic
ACCACAGAAAGAAAAGCAGG+AGG 0.715286 1_4:-46222399 None:intergenic
TGATATATTTGACTTCTCCG+AGG 0.718503 1_4:+46226336 Msa0165590:CDS
GTTGATGGGCTGACAGCAGG+AGG 0.724183 1_4:-46221165 None:intergenic
CACCTTTACAAGCTCCACCG+TGG 0.728912 1_4:+46221877 Msa0165590:CDS
AGGTGCATATAAACTCCGGG+AGG 0.742328 1_4:+46222922 Msa0165590:CDS
ATATCGGGGAGTACACCTGG+TGG 0.750372 1_4:+46222792 Msa0165590:CDS
GAGGCATAAGCTAACCACCG+TGG 0.793825 1_4:-46221090 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTAATTTAGGTTAATTT+TGG + chr1_4:46219378-46219397 Msa0165590:intron 10.0%
!! AATAAATTAGAATATTTGTT+TGG + chr1_4:46219465-46219484 Msa0165590:intron 10.0%
!!! CATTAATTTTAATTTTCAAA+GGG - chr1_4:46224639-46224658 None:intergenic 10.0%
!!! TTTTTTTTTAAAGAAATGTT+AGG + chr1_4:46225320-46225339 Msa0165590:intron 10.0%
!! AAAATGTGTATAAAATAAAA+AGG + chr1_4:46226457-46226476 Msa0165590:intron 10.0%
!! AAGTAAGTTATTTAAAAAGT+TGG + chr1_4:46219887-46219906 Msa0165590:intron 15.0%
!! AGATAACATTGAAAAAATAT+AGG - chr1_4:46220676-46220695 None:intergenic 15.0%
!!! TGTTTGAATATTTTAAATGA+GGG - chr1_4:46220780-46220799 None:intergenic 15.0%
!!! ATGTTTGAATATTTTAAATG+AGG - chr1_4:46220781-46220800 None:intergenic 15.0%
!! TTCTTTCTTAAAAGTAATAT+TGG + chr1_4:46221489-46221508 Msa0165590:intron 15.0%
!! TTTGCAATTATAGAAAAATA+AGG - chr1_4:46222121-46222140 None:intergenic 15.0%
!!! TTATTTTTCTATAATTGCAA+AGG + chr1_4:46222120-46222139 Msa0165590:intron 15.0%
!!! ATAATTTTCATTCTAAACAT+GGG + chr1_4:46223307-46223326 Msa0165590:intron 15.0%
!!! TTTTTTTGTCATTAAAAACA+TGG + chr1_4:46223518-46223537 Msa0165590:intron 15.0%
!! AATAAAATAAAATAGTTCCT+TGG - chr1_4:46223633-46223652 None:intergenic 15.0%
!! AAAACATAAAATTGAATGTT+AGG + chr1_4:46223785-46223804 Msa0165590:intron 15.0%
!! AAGATAATAATTAAGTAACA+TGG + chr1_4:46224485-46224504 Msa0165590:intron 15.0%
!!! GCATTAATTTTAATTTTCAA+AGG - chr1_4:46224640-46224659 None:intergenic 15.0%
!!! CAAACATTTTGTAATTTTAA+GGG - chr1_4:46226537-46226556 None:intergenic 15.0%
!!! ACAAACATTTTGTAATTTTA+AGG - chr1_4:46226538-46226557 None:intergenic 15.0%
!!! AAGTTTGAAAATATTTTGAG+AGG + chr1_4:46218608-46218627 Msa0165590:five_prime_UTR 20.0%
!!! GTCTAAAATAATAAGAAGTA+TGG - chr1_4:46219797-46219816 None:intergenic 20.0%
!! TAAGTTATTTAAAAAGTTGG+TGG + chr1_4:46219890-46219909 Msa0165590:intron 20.0%
!! TATAATTGTTCAGTAAACAT+TGG + chr1_4:46220714-46220733 Msa0165590:intron 20.0%
!! TAAAAATCAAAACAACAAAC+TGG - chr1_4:46220935-46220954 None:intergenic 20.0%
!!! CTTTTAAGAAAGAAAATATC+TGG - chr1_4:46221483-46221502 None:intergenic 20.0%
!! TGGAAAATAATCATTCTATA+TGG + chr1_4:46221609-46221628 Msa0165590:intron 20.0%
!! AATTTAAGCTATAAACATGA+AGG - chr1_4:46221945-46221964 None:intergenic 20.0%
!! TTAAATGATGGTATAAAGAA+CGG + chr1_4:46222079-46222098 Msa0165590:intron 20.0%
!! AGAATAAAAAATGTTAATGC+CGG + chr1_4:46222426-46222445 Msa0165590:CDS 20.0%
!! AATTGTGAAAATTATAGTGT+TGG + chr1_4:46222849-46222868 Msa0165590:CDS 20.0%
!! ATTGTGAAAATTATAGTGTT+GGG + chr1_4:46222850-46222869 Msa0165590:CDS 20.0%
!!! GATAATTTTCATTCTAAACA+TGG + chr1_4:46223306-46223325 Msa0165590:intron 20.0%
!!! TGTGTTTAGGATTAATTTTT+AGG + chr1_4:46223399-46223418 Msa0165590:intron 20.0%
!! TAAATCATGTAAAAGTAAGA+TGG - chr1_4:46223673-46223692 None:intergenic 20.0%
!!! TTCTTAAATTTTCATCATGA+GGG - chr1_4:46224067-46224086 None:intergenic 20.0%
!! AATATAACTGCTGAAATTAT+GGG + chr1_4:46224318-46224337 Msa0165590:intron 20.0%
!! AATGAATAAAGACTAGAATA+TGG + chr1_4:46224363-46224382 Msa0165590:intron 20.0%
!!! TTAGTATTCTTTAACTTTAG+GGG - chr1_4:46224761-46224780 None:intergenic 20.0%
!!! CTTAGTATTCTTTAACTTTA+GGG - chr1_4:46224762-46224781 None:intergenic 20.0%
!!! TTAGTATTCTTTAACTTTAC+GGG - chr1_4:46224888-46224907 None:intergenic 20.0%
!!! CTTAGTATTCTTTAACTTTA+CGG - chr1_4:46224762-46224781 None:intergenic 20.0%
!! AAACCAAACATAAATGATAT+TGG + chr1_4:46225050-46225069 Msa0165590:intron 20.0%
!! TCACTTCAAAAAATCATAAT+TGG + chr1_4:46225255-46225274 Msa0165590:intron 20.0%
!!! TTTTTTAAAGAAATGTTAGG+TGG + chr1_4:46225323-46225342 Msa0165590:intron 20.0%
!! TAAAACCTAAAACTTCAATA+TGG - chr1_4:46225539-46225558 None:intergenic 20.0%
!! AGAAAGAGATAAATAATAAG+AGG + chr1_4:46225565-46225584 Msa0165590:intron 20.0%
!! GAAAGAGATAAATAATAAGA+GGG + chr1_4:46225566-46225585 Msa0165590:intron 20.0%
!! TCTCAATAAATAGAAAAATC+AGG + chr1_4:46225669-46225688 Msa0165590:intron 20.0%
!!! AATTTCAATTCAAGTTTTAG+TGG + chr1_4:46226115-46226134 Msa0165590:CDS 20.0%
!!! TATGATCAATTTTTTCAAGA+GGG + chr1_4:46226193-46226212 Msa0165590:CDS 20.0%
!! TCATTTACAAGAAAATTAGA+AGG - chr1_4:46226752-46226771 None:intergenic 20.0%
! ATTGCTATAAGTCTCATAAT+TGG + chr1_4:46219771-46219790 Msa0165590:intron 25.0%
!! ATTTCCTTTTGCAATATTTC+TGG + chr1_4:46221449-46221468 Msa0165590:intron 25.0%
! ATTTACATGAGATCATCTAT+TGG + chr1_4:46221525-46221544 Msa0165590:intron 25.0%
! CTTAAAAAATCCTTCTTCTA+TGG - chr1_4:46221561-46221580 None:intergenic 25.0%
!!! CATAGAAGAAGGATTTTTTA+AGG + chr1_4:46221559-46221578 Msa0165590:intron 25.0%
!!! TACTGTTACTAATTTTTTGC+AGG + chr1_4:46221645-46221664 Msa0165590:intron 25.0%
! AATATAAAGTTAACCTTCCT+AGG + chr1_4:46222009-46222028 Msa0165590:intron 25.0%
! TAAATGATGGTATAAAGAAC+GGG + chr1_4:46222080-46222099 Msa0165590:intron 25.0%
! AGAAAAAGAGGTTTCTATAT+CGG + chr1_4:46222776-46222795 Msa0165590:CDS 25.0%
! TGATTCCATAAAACTTAATC+AGG + chr1_4:46222878-46222897 Msa0165590:CDS 25.0%
!! ACAATCCTGATTAAGTTTTA+TGG - chr1_4:46222886-46222905 None:intergenic 25.0%
!! CTATTTCCTTCTCAATTTTT+AGG + chr1_4:46223040-46223059 Msa0165590:intron 25.0%
!! AAATGTGAACTTTTAACCAA+TGG + chr1_4:46223107-46223126 Msa0165590:CDS 25.0%
!! AATGTGAACTTTTAACCAAT+GGG + chr1_4:46223108-46223127 Msa0165590:CDS 25.0%
! TTAATATAAAACTTTCCCAG+TGG - chr1_4:46223275-46223294 None:intergenic 25.0%
! TAGAATGAAAATTATCTGAG+TGG - chr1_4:46223302-46223321 None:intergenic 25.0%
!! AGTTCTCAAAATTTTTGTAG+TGG + chr1_4:46223350-46223369 Msa0165590:intron 25.0%
! TTTGTAGTGGTGAATATATT+CGG + chr1_4:46223363-46223382 Msa0165590:intron 25.0%
!! ATTTCAACTAAAAAGTGCAA+AGG - chr1_4:46223449-46223468 None:intergenic 25.0%
!!! TGCACTTTTTAGTTGAAATA+TGG + chr1_4:46223450-46223469 Msa0165590:intron 25.0%
! AAGGAAAAGTGAATCTTTAA+AGG - chr1_4:46223940-46223959 None:intergenic 25.0%
!! TTTTATTGAGCAATAAACAG+AGG - chr1_4:46223966-46223985 None:intergenic 25.0%
! TTGCTCAATAAAATTTAGAC+TGG + chr1_4:46223973-46223992 Msa0165590:intron 25.0%
! TGCTCAATAAAATTTAGACT+GGG + chr1_4:46223974-46223993 Msa0165590:intron 25.0%
!!! ATTTTTCAGGAACCATATTT+TGG + chr1_4:46224001-46224020 Msa0165590:intron 25.0%
! ACCTTGCAAAATTAAATGAA+CGG - chr1_4:46224030-46224049 None:intergenic 25.0%
!! GTTCTTAAATTTTCATCATG+AGG - chr1_4:46224068-46224087 None:intergenic 25.0%
!! GTAGAACATTTTCAATGAAT+TGG - chr1_4:46224105-46224124 None:intergenic 25.0%
! ATAATAAAAGCTTTCACACT+GGG - chr1_4:46224284-46224303 None:intergenic 25.0%
! TATAATAAAAGCTTTCACAC+TGG - chr1_4:46224285-46224304 None:intergenic 25.0%
! CAATATAACTGCTGAAATTA+TGG + chr1_4:46224317-46224336 Msa0165590:intron 25.0%
! ATATAACTGCTGAAATTATG+GGG + chr1_4:46224319-46224338 Msa0165590:intron 25.0%
!! ATATGTTTTCCTATTCAATC+AGG - chr1_4:46224464-46224483 None:intergenic 25.0%
!! GCTTAGTATTCTTTAACTTT+AGG - chr1_4:46224763-46224782 None:intergenic 25.0%
! AACATGTCAAATAACAACTT+GGG + chr1_4:46225148-46225167 Msa0165590:intron 25.0%
!! AGATACCATATTGAAGTTTT+AGG + chr1_4:46225531-46225550 Msa0165590:intron 25.0%
!!! GATTATAAACTGATTTTACG+AGG + chr1_4:46225761-46225780 Msa0165590:intron 25.0%
! ATTTGAATGTAAGAACAAAG+AGG + chr1_4:46225953-46225972 Msa0165590:intron 25.0%
! AAACTGTTATAACACAAATG+AGG + chr1_4:46226015-46226034 Msa0165590:intron 25.0%
! TGAAAAAATTGATCATAGTC+TGG - chr1_4:46226190-46226209 None:intergenic 25.0%
!!! CTATGATCAATTTTTTCAAG+AGG + chr1_4:46226192-46226211 Msa0165590:CDS 25.0%
! GGAATTTAATTAACAAATGC+AGG + chr1_4:46226631-46226650 Msa0165590:intron 25.0%
! CATTAAATTCCTTGAATCAA+TGG - chr1_4:46226689-46226708 None:intergenic 25.0%
! ATAACTACAGATTATTTGTG+TGG + chr1_4:46226787-46226806 Msa0165590:intron 25.0%
!!! TTTCTTTAGAGTTTATAGAG+TGG + chr1_4:46226853-46226872 Msa0165590:intron 25.0%
!! GTTTTCGGTAATTGTCATTT+AGG - chr1_4:46218666-46218685 None:intergenic 30.0%
!!! CTAATCACAAGTCTTGTTTT+CGG - chr1_4:46218681-46218700 None:intergenic 30.0%
!!! TGTGATGATTTTGAGTTTTG+AGG - chr1_4:46218733-46218752 None:intergenic 30.0%
AATTTGACCTTTAACGAAGA+CGG - chr1_4:46218757-46218776 None:intergenic 30.0%
! TCATCTACACGATTTTCTAA+AGG - chr1_4:46218944-46218963 None:intergenic 30.0%
AAACAAGGAAAGAACAACAA+CGG + chr1_4:46218966-46218985 Msa0165590:CDS 30.0%
GAAATGAACTTGAAAGAAGA+AGG - chr1_4:46219014-46219033 None:intergenic 30.0%
TATTGTTGATCAGAAACAAG+TGG - chr1_4:46219431-46219450 None:intergenic 30.0%
!! GATGATGGAATAGTTAAACA+AGG + chr1_4:46219530-46219549 Msa0165590:intron 30.0%
AGTAAAGTAAGCAATCTCTA+AGG + chr1_4:46219572-46219591 Msa0165590:intron 30.0%
!! AAAGTTGGTGGATAAATCAA+AGG + chr1_4:46219902-46219921 Msa0165590:intron 30.0%
!! AAGTTGGTGGATAAATCAAA+GGG + chr1_4:46219903-46219922 Msa0165590:intron 30.0%
!! CTCTTAAGAAGCATTGATTA+TGG + chr1_4:46220026-46220045 Msa0165590:intron 30.0%
GTGAAGTTATTTATGAACTG+AGG + chr1_4:46220128-46220147 Msa0165590:intron 30.0%
!!! ACATCTATTTTTTGTCAAGC+AGG + chr1_4:46220165-46220184 Msa0165590:intron 30.0%
TGTGATAAATCAAAGATACC+TGG + chr1_4:46220424-46220443 Msa0165590:CDS 30.0%
TGTTCAGTAAACATTGGTAT+TGG + chr1_4:46220720-46220739 Msa0165590:intron 30.0%
TTATTGACGTAACTTATACC+TGG + chr1_4:46220909-46220928 Msa0165590:intron 30.0%
GACTTGTGTTTAACAACAAT+GGG - chr1_4:46221122-46221141 None:intergenic 30.0%
CTGATCAATCTTAGTGATAT+GGG + chr1_4:46221255-46221274 Msa0165590:CDS 30.0%
AAATTCTACAGAAACAGATG+CGG + chr1_4:46221377-46221396 Msa0165590:CDS 30.0%
TAGATGATAGTTTATGTCAG+TGG + chr1_4:46221582-46221601 Msa0165590:intron 30.0%
GATGTTATTACCATGAATTG+AGG - chr1_4:46221779-46221798 None:intergenic 30.0%
TTCAAGACATCATTAGATGA+TGG - chr1_4:46221985-46222004 None:intergenic 30.0%
TTGTTGGTCAAACTTCTTTA+TGG + chr1_4:46222040-46222059 Msa0165590:intron 30.0%
GTCAAACTTCTTTATGGATT+TGG + chr1_4:46222046-46222065 Msa0165590:intron 30.0%
GGCAAGATATGTTTAAATGA+TGG + chr1_4:46222067-46222086 Msa0165590:intron 30.0%
CTCAATCATGTATGTTATAC+AGG + chr1_4:46222149-46222168 Msa0165590:intron 30.0%
! TTTTAGTCATTACAGTCAGT+GGG + chr1_4:46222188-46222207 Msa0165590:CDS 30.0%
AAAAATATGACAAGTTCCCT+TGG - chr1_4:46222229-46222248 None:intergenic 30.0%
AGTTCTTAAGATACACAATC+AGG + chr1_4:46222275-46222294 Msa0165590:CDS 30.0%
TAAAAAATGTTAATGCCGGA+TGG + chr1_4:46222430-46222449 Msa0165590:CDS 30.0%
AAATCTTCTTCTTGTATCTG+TGG - chr1_4:46222699-46222718 None:intergenic 30.0%
ATGTCTGTAGAAGATATGAT+TGG + chr1_4:46222751-46222770 Msa0165590:CDS 30.0%
ATATGATTGGCAAGAAAAAG+AGG + chr1_4:46222764-46222783 Msa0165590:CDS 30.0%
GAAAAAGAGGTTTCTATATC+GGG + chr1_4:46222777-46222796 Msa0165590:CDS 30.0%
AAAAAGAGGTTTCTATATCG+GGG + chr1_4:46222778-46222797 Msa0165590:CDS 30.0%
GAACATAATAATGTCGAGAA+AGG - chr1_4:46223009-46223028 None:intergenic 30.0%
AAGACACCTAAAAATTGAGA+AGG - chr1_4:46223049-46223068 None:intergenic 30.0%
! ATGTGAACTTTTAACCAATG+GGG + chr1_4:46223109-46223128 Msa0165590:CDS 30.0%
CTTATTTCAACCTCATTAAC+AGG - chr1_4:46223155-46223174 None:intergenic 30.0%
! GAATTTTGTGGAAATGATCA+AGG - chr1_4:46223199-46223218 None:intergenic 30.0%
CAAAAACAAAAAGGCAGATA+AGG - chr1_4:46223250-46223269 None:intergenic 30.0%
!!! CTTATCTGCCTTTTTGTTTT+TGG + chr1_4:46223248-46223267 Msa0165590:intron 30.0%
!!! GATTAATTTTTAGGTGCACA+TGG + chr1_4:46223408-46223427 Msa0165590:intron 30.0%
AAAAGAAGTCAAGTGTAAAC+TGG - chr1_4:46223480-46223499 None:intergenic 30.0%
AAAGTAAGATGGAAATGCAT+AGG - chr1_4:46223662-46223681 None:intergenic 30.0%
!! TGAATGTTAGGTTGATAACA+CGG + chr1_4:46223797-46223816 Msa0165590:intron 30.0%
CCTTGCAAAATTAAATGAAC+GGG - chr1_4:46224029-46224048 None:intergenic 30.0%
TGTTCTACAATAATTGTCAG+AGG + chr1_4:46224117-46224136 Msa0165590:intron 30.0%
TTTGTGGGAAAAACATATGT+TGG + chr1_4:46224246-46224265 Msa0165590:CDS 30.0%
TTTCCTATTCAATCAGGATT+AGG - chr1_4:46224458-46224477 None:intergenic 30.0%
GAACATGTCAAATAACAACT+TGG + chr1_4:46225147-46225166 Msa0165590:intron 30.0%
AAAAAAAATGTGCGCAAAAC+CGG + chr1_4:46225173-46225192 Msa0165590:intron 30.0%
GAATAATATGAGACTTGACA+CGG + chr1_4:46225491-46225510 Msa0165590:intron 30.0%
! AGAGGTAGTTGTAGTTATTT+TGG + chr1_4:46225971-46225990 Msa0165590:intron 30.0%
TTTGTGTTATAACAGTTTCC+AGG - chr1_4:46226013-46226032 None:intergenic 30.0%
TATACCATCAGAGAAATTTG+AGG - chr1_4:46226053-46226072 None:intergenic 30.0%
AAGGTTAAATCATCAGAACA+TGG + chr1_4:46226079-46226098 Msa0165590:CDS 30.0%
TTACAAAATGTTTGTGTTGC+AGG + chr1_4:46226543-46226562 Msa0165590:intron 30.0%
TTTACAACAATTCGAAGAGA+GGG - chr1_4:46226598-46226617 None:intergenic 30.0%
ATTTACAACAATTCGAAGAG+AGG - chr1_4:46226599-46226618 None:intergenic 30.0%
CTCTTCGAATTGTTGTAAAT+TGG + chr1_4:46226599-46226618 Msa0165590:intron 30.0%
TTCGAATTGTTGTAAATTGG+TGG + chr1_4:46226602-46226621 Msa0165590:intron 30.0%
AACGAGCAATTTCATAATCT+TGG - chr1_4:46226893-46226912 None:intergenic 30.0%
ACGACATTATCGAAAATGTG+TGG + chr1_4:46218637-46218656 Msa0165590:five_prime_UTR 35.0%
CGACATTATCGAAAATGTGT+GGG + chr1_4:46218638-46218657 Msa0165590:five_prime_UTR 35.0%
GACATTATCGAAAATGTGTG+GGG + chr1_4:46218639-46218658 Msa0165590:five_prime_UTR 35.0%
ATCGTGTAGATGAAGAAACA+AGG + chr1_4:46218951-46218970 Msa0165590:exon 35.0%
CATTTCGTCTTGCATTAAGA+CGG + chr1_4:46219028-46219047 Msa0165590:CDS 35.0%
!! AGCGAAAACTTGCTAAATCT+AGG + chr1_4:46219247-46219266 Msa0165590:intron 35.0%
CATGAACAACGTTTCTACAA+AGG - chr1_4:46219303-46219322 None:intergenic 35.0%
TAATATTACTTGCACGTGTG+TGG + chr1_4:46219615-46219634 Msa0165590:intron 35.0%
TCGAGTATGGAAAAGCTATT+TGG + chr1_4:46219641-46219660 Msa0165590:intron 35.0%
AACCAGTCTCACATTAATTC+TGG - chr1_4:46219819-46219838 None:intergenic 35.0%
ACTTACTTAACTCCCTAAAG+AGG - chr1_4:46219875-46219894 None:intergenic 35.0%
AATCAAAGGGTGAGATTAAG+TGG + chr1_4:46219916-46219935 Msa0165590:intron 35.0%
ACGTCATGTAATTGTCAATG+TGG + chr1_4:46219971-46219990 Msa0165590:intron 35.0%
!! GTTATAGAGTACTGCATATG+TGG + chr1_4:46220001-46220020 Msa0165590:intron 35.0%
!!! TTTTGTGCAATAGAGTACTG+TGG + chr1_4:46220106-46220125 Msa0165590:intron 35.0%
ATCGAGAACTTGAAATCCAT+TGG - chr1_4:46220263-46220282 None:intergenic 35.0%
TGCATCTGTAAAAACGAAAC+AGG - chr1_4:46220334-46220353 None:intergenic 35.0%
CTGTTAGATTCTACTCACTA+AGG + chr1_4:46220515-46220534 Msa0165590:CDS 35.0%
TAGAGCATGAACATAGGTAT+GGG - chr1_4:46220542-46220561 None:intergenic 35.0%
TTAGAGCATGAACATAGGTA+TGG - chr1_4:46220543-46220562 None:intergenic 35.0%
GAATCTTAGAGCATGAACAT+AGG - chr1_4:46220548-46220567 None:intergenic 35.0%
TAACCATGTAGACAGTTGAA+CGG - chr1_4:46220570-46220589 None:intergenic 35.0%
GTTTACCAATTTCCTCCATT+GGG + chr1_4:46220742-46220761 Msa0165590:intron 35.0%
! GCTTAGTGTAACAAGTTTTC+AGG + chr1_4:46220804-46220823 Msa0165590:intron 35.0%
GAACATGTAAGTGATCCATT+TGG - chr1_4:46220849-46220868 None:intergenic 35.0%
AACTAAGACACTGTTCGTTA+TGG - chr1_4:46220887-46220906 None:intergenic 35.0%
!! GTTTAACAACAATGGGTTGT+TGG - chr1_4:46221115-46221134 None:intergenic 35.0%
CGACTTGTGTTTAACAACAA+TGG - chr1_4:46221123-46221142 None:intergenic 35.0%
TGCTAGATTCCATAGCATAT+CGG - chr1_4:46221218-46221237 None:intergenic 35.0%
TATGGAATCTAGCAAGCATT+TGG + chr1_4:46221224-46221243 Msa0165590:CDS 35.0%
GCTGATCAATCTTAGTGATA+TGG + chr1_4:46221254-46221273 Msa0165590:CDS 35.0%
TATCAAGATCTAATGCCTGA+TGG + chr1_4:46221300-46221319 Msa0165590:CDS 35.0%
CTGTCCAGAAATATTGCAAA+AGG - chr1_4:46221456-46221475 None:intergenic 35.0%
!!! TTTTTTGCAGGTTGTTGTCA+AGG + chr1_4:46221657-46221676 Msa0165590:intron 35.0%
!!! CAAGGATTTTGTTTCTAGAG+CGG + chr1_4:46221675-46221694 Msa0165590:CDS 35.0%
TCAAAACATAGCGCAGATAT+AGG - chr1_4:46221730-46221749 None:intergenic 35.0%
TTCCTACTCAAAGAAAGGAT+CGG + chr1_4:46221819-46221838 Msa0165590:CDS 35.0%
TGCTATTCTCCGTTTCTTTA+AGG + chr1_4:46221919-46221938 Msa0165590:intron 35.0%
ACATGAAGGCCTTAAAGAAA+CGG - chr1_4:46221931-46221950 None:intergenic 35.0%
!! GTTTTAGTCATTACAGTCAG+TGG + chr1_4:46222187-46222206 Msa0165590:CDS 35.0%
! ATTTTTGTCCTTTCCCCTTT+TGG + chr1_4:46222243-46222262 Msa0165590:CDS 35.0%
!! TGCTGGTTTACAGTAAAATG+TGG - chr1_4:46222354-46222373 None:intergenic 35.0%
TACTGAATTAAGTGACCAGA+AGG - chr1_4:46222609-46222628 None:intergenic 35.0%
TAACCTACTATCGTCATTGA+TGG + chr1_4:46222629-46222648 Msa0165590:CDS 35.0%
GTTCTTGAAGCAGTTTCATT+TGG - chr1_4:46222660-46222679 None:intergenic 35.0%
AGAAGATTTACGAGTGAAAG+TGG + chr1_4:46222710-46222729 Msa0165590:CDS 35.0%
GGAAACTGCTGAAATGATAT+TGG + chr1_4:46222818-46222837 Msa0165590:CDS 35.0%
TTAGGTGTCTTTCTTTGTGA+TGG + chr1_4:46223058-46223077 Msa0165590:intron 35.0%
TAGGTGTCTTTCTTTGTGAT+GGG + chr1_4:46223059-46223078 Msa0165590:intron 35.0%
AGAGGATATTCCTGTTAATG+AGG + chr1_4:46223142-46223161 Msa0165590:CDS 35.0%
TGAGGTTGAAATAAGACAGA+AGG + chr1_4:46223160-46223179 Msa0165590:CDS 35.0%
TTTGTGGAAATGATCAAGGA+CGG - chr1_4:46223195-46223214 None:intergenic 35.0%
!!! CTTTTTGTTTTTGGTCCACT+GGG + chr1_4:46223257-46223276 Msa0165590:intron 35.0%
AATCCTAAACACATACGAAG+AGG - chr1_4:46223392-46223411 None:intergenic 35.0%
! ACTTGACTTCTTTTGTTGCT+AGG + chr1_4:46223486-46223505 Msa0165590:intron 35.0%
GATCTTCTTTATGCTCTACA+TGG + chr1_4:46223540-46223559 Msa0165590:intron 35.0%
! ATGGGAGTTTTACGTTGTTA+CGG + chr1_4:46223607-46223626 Msa0165590:intron 35.0%
TTCCACGAATACTAAATCCA+CGG - chr1_4:46223847-46223866 None:intergenic 35.0%
GTGTGTGTGTCTAATATGAA+TGG + chr1_4:46223889-46223908 Msa0165590:intron 35.0%
GAATGGTTTCTTAGTGTTAG+TGG + chr1_4:46223906-46223925 Msa0165590:intron 35.0%
AATGAACGGGAACCAAAATA+TGG - chr1_4:46224016-46224035 None:intergenic 35.0%
!! CCCGTTCATTTAATTTTGCA+AGG + chr1_4:46224026-46224045 Msa0165590:intron 35.0%
!!! ATGGGGTTTTAGATAATGAG+AGG + chr1_4:46224336-46224355 Msa0165590:intron 35.0%
TAGCACTTACCCCTATTTAT+AGG + chr1_4:46224417-46224436 Msa0165590:intron 35.0%
AGCACTTACCCCTATTTATA+GGG + chr1_4:46224418-46224437 Msa0165590:intron 35.0%
TTACCCCTATTTATAGGGAT+GGG + chr1_4:46224423-46224442 Msa0165590:intron 35.0%
AGTACCCATCCCTATAAATA+GGG - chr1_4:46224430-46224449 None:intergenic 35.0%
ACTCCTAATCCTGATTGAAT+AGG + chr1_4:46224452-46224471 Msa0165590:intron 35.0%
ATTATCTTGCACTTGCAGTT+TGG - chr1_4:46224698-46224717 None:intergenic 35.0%
! GTTCATGAAACTTGTGGTTT+TGG - chr1_4:46224957-46224976 None:intergenic 35.0%
!! ATGTAAGTGCTGGCTTAATA+TGG - chr1_4:46225002-46225021 None:intergenic 35.0%
CGGCCAATATCATTTATGTT+TGG - chr1_4:46225056-46225075 None:intergenic 35.0%
!! TTGTTTCTGCTTGTTTAGTC+CGG - chr1_4:46225195-46225214 None:intergenic 35.0%
AAACAAGCAGAAACAACGAT+AGG + chr1_4:46225199-46225218 Msa0165590:intron 35.0%
AACAAGCAGAAACAACGATA+GGG + chr1_4:46225200-46225219 Msa0165590:intron 35.0%
AAATCATAATTGGCAGCTTC+TGG + chr1_4:46225265-46225284 Msa0165590:intron 35.0%
TGTTTGACAAAAATGAGCAG+AGG + chr1_4:46225420-46225439 Msa0165590:CDS 35.0%
AAGTACAATCCCAAACTTTC+AGG + chr1_4:46225456-46225475 Msa0165590:intron 35.0%
ACAGTTTCCAGGATAAAAAC+AGG - chr1_4:46226002-46226021 None:intergenic 35.0%
AACACAAATGAGGTTTCAGT+AGG + chr1_4:46226025-46226044 Msa0165590:intron 35.0%
! GAATATGCATGTTACTTGTG+AGG + chr1_4:46226147-46226166 Msa0165590:CDS 35.0%
! TGATATATTTGACTTCTCCG+AGG + chr1_4:46226336-46226355 Msa0165590:CDS 35.0%
TTACAACAATTCGAAGAGAG+GGG - chr1_4:46226597-46226616 None:intergenic 35.0%
!! GTTGTAAATTGGTGGTGTAA+AGG + chr1_4:46226610-46226629 Msa0165590:intron 35.0%
!! CTTTAGAGTTTATAGAGTGG+AGG + chr1_4:46226856-46226875 Msa0165590:intron 35.0%
ATCACAACCGTCTTCGTTAA+AGG + chr1_4:46218747-46218766 Msa0165590:five_prime_UTR 40.0%
!! TTCGGTTATTTGAGTTGTGG+TGG - chr1_4:46218788-46218807 None:intergenic 40.0%
!! GTGTTCGGTTATTTGAGTTG+TGG - chr1_4:46218791-46218810 None:intergenic 40.0%
CGATAAAAAACGACGGTGTT+CGG - chr1_4:46218806-46218825 None:intergenic 40.0%
TGCATAAGAGTTGAAGACGA+CGG - chr1_4:46218848-46218867 None:intergenic 40.0%
TGCTACCTGATCTTTACGAT+CGG - chr1_4:46219114-46219133 None:intergenic 40.0%
GACATCGCATTAATTCTGGT+CGG - chr1_4:46219507-46219526 None:intergenic 40.0%
GACCAGAATTAATGCGATGT+CGG + chr1_4:46219506-46219525 Msa0165590:intron 40.0%
TTTACTCTCTCAAGAGGAGT+TGG - chr1_4:46219558-46219577 None:intergenic 40.0%
GCTTACTTTACTCTCTCAAG+AGG - chr1_4:46219564-46219583 None:intergenic 40.0%
! TTCGTGTTTTCCGACAAAAG+CGG + chr1_4:46219736-46219755 Msa0165590:intron 40.0%
!! TATACGAGTACCGCTTTTGT+CGG - chr1_4:46219749-46219768 None:intergenic 40.0%
GACCAGAATTAATGTGAGAC+TGG + chr1_4:46219814-46219833 Msa0165590:intron 40.0%
!! GAGACTGGTTTGTTTGATGA+TGG + chr1_4:46219829-46219848 Msa0165590:intron 40.0%
AGACAATCCAACTCCTCTTT+AGG + chr1_4:46219859-46219878 Msa0165590:intron 40.0%
GACAATCCAACTCCTCTTTA+GGG + chr1_4:46219860-46219879 Msa0165590:intron 40.0%
TTAACTCCCTAAAGAGGAGT+TGG - chr1_4:46219869-46219888 None:intergenic 40.0%
TAAGTGGAATTGCATGACAG+TGG + chr1_4:46219932-46219951 Msa0165590:intron 40.0%
! TTTTTGTCAAGCAGGTGCTT+TGG + chr1_4:46220173-46220192 Msa0165590:intron 40.0%
! TTTTGTCAAGCAGGTGCTTT+GGG + chr1_4:46220174-46220193 Msa0165590:intron 40.0%
TTCAAACGTGTACTCCTACT+CGG + chr1_4:46220232-46220251 Msa0165590:CDS 40.0%
ATCCATTGGAATAACCGAGT+AGG - chr1_4:46220249-46220268 None:intergenic 40.0%
!! TGGATTTCAAGTTCTCGATG+TGG + chr1_4:46220264-46220283 Msa0165590:CDS 40.0%
TGGAAGATGCCTCTAATATC+AGG + chr1_4:46220284-46220303 Msa0165590:CDS 40.0%
GGAAGATGCCTCTAATATCA+GGG + chr1_4:46220285-46220304 Msa0165590:CDS 40.0%
GACAAGTTCCCTGATATTAG+AGG - chr1_4:46220296-46220315 None:intergenic 40.0%
AGCATCACATCCTTTACTCT+TGG + chr1_4:46220393-46220412 Msa0165590:CDS 40.0%
CATGCAACAACCAAGAGTAA+AGG - chr1_4:46220406-46220425 None:intergenic 40.0%
ACAGTGCAAAATGTCAGAGA+TGG + chr1_4:46220448-46220467 Msa0165590:CDS 40.0%
ATTCCGTTCAACTGTCTACA+TGG + chr1_4:46220564-46220583 Msa0165590:CDS 40.0%
GGTTTACCAATTTCCTCCAT+TGG + chr1_4:46220741-46220760 Msa0165590:intron 40.0%
TGATACTTCATGAGGCCAAA+TGG + chr1_4:46220831-46220850 Msa0165590:intron 40.0%
ATCAAAACAACAAACTGGCC+AGG - chr1_4:46220930-46220949 None:intergenic 40.0%
GGAATGGTTGGGGTTAATAT+TGG + chr1_4:46221045-46221064 Msa0165590:CDS 40.0%
! GTTGGGGTTAATATTGGCTA+TGG + chr1_4:46221051-46221070 Msa0165590:CDS 40.0%
! TAATATTGGCTATGGTCCGA+TGG + chr1_4:46221059-46221078 Msa0165590:CDS 40.0%
!! TAACAACAATGGGTTGTTGG+AGG - chr1_4:46221112-46221131 None:intergenic 40.0%
GCTAGATTCCATAGCATATC+GGG - chr1_4:46221217-46221236 None:intergenic 40.0%
CTAACTTTCCAGCCTGAATT+CGG - chr1_4:46221345-46221364 None:intergenic 40.0%
TTCAGCTTAGCCATAGAAGA+AGG + chr1_4:46221548-46221567 Msa0165590:intron 40.0%
TAGTTTATGTCAGTGGCAAC+TGG + chr1_4:46221589-46221608 Msa0165590:intron 40.0%
!!! TTTTGTTTCTAGAGCGGTTG+TGG + chr1_4:46221681-46221700 Msa0165590:CDS 40.0%
CTAGTTACAGCCTCAATTCA+TGG + chr1_4:46221766-46221785 Msa0165590:CDS 40.0%
ATGCCTTCCTACTCAAAGAA+AGG + chr1_4:46221814-46221833 Msa0165590:CDS 40.0%
GATCCTTTCTTTGAGTAGGA+AGG - chr1_4:46221820-46221839 None:intergenic 40.0%
TCCTACTCAAAGAAAGGATC+GGG + chr1_4:46221820-46221839 Msa0165590:CDS 40.0%
AAGTTAACCTTCCTAGGTAG+TGG + chr1_4:46222015-46222034 Msa0165590:intron 40.0%
AACAAAACCACTACCTAGGA+AGG - chr1_4:46222025-46222044 None:intergenic 40.0%
!!! TTCCTAGGTAGTGGTTTTGT+TGG + chr1_4:46222024-46222043 Msa0165590:intron 40.0%
AATATGACAAGTTCCCTTGG+AGG - chr1_4:46222226-46222245 None:intergenic 40.0%
ATACACAATCAGGACACAGA+AGG + chr1_4:46222285-46222304 Msa0165590:CDS 40.0%
AGAAAGAAAAGCAGGAGGTT+GGG - chr1_4:46222397-46222416 None:intergenic 40.0%
CTAACCACAGAAAGAAAAGC+AGG - chr1_4:46222405-46222424 None:intergenic 40.0%
TAATGCCGGATGGCTTAATA+CGG + chr1_4:46222440-46222459 Msa0165590:CDS 40.0%
ACTAACCGTATTAAGCCATC+CGG - chr1_4:46222448-46222467 None:intergenic 40.0%
AATGTTTCATCTTCTGCAGC+AGG + chr1_4:46222468-46222487 Msa0165590:CDS 40.0%
ATGTTTCATCTTCTGCAGCA+GGG + chr1_4:46222469-46222488 Msa0165590:CDS 40.0%
ATACGCAAAAGTTCATGCCA+TGG + chr1_4:46222563-46222582 Msa0165590:CDS 40.0%
ATAAACCAGCAAGTGTTCCA+TGG - chr1_4:46222583-46222602 None:intergenic 40.0%
!! TTGCTGGTTTATACTCCTTC+TGG + chr1_4:46222591-46222610 Msa0165590:CDS 40.0%
TCTTCTTGTATCTGTGGTGA+AGG - chr1_4:46222693-46222712 None:intergenic 40.0%
TGAAAGTGGAACCTGTTCAA+TGG + chr1_4:46222724-46222743 Msa0165590:CDS 40.0%
ACCAATTTGGCAGAAATCTG+AGG + chr1_4:46222947-46222966 Msa0165590:CDS 40.0%
ACCTCAGATTTCTGCCAAAT+TGG - chr1_4:46222951-46222970 None:intergenic 40.0%
CTCTATTTCAATCTCCCCAT+TGG - chr1_4:46223126-46223145 None:intergenic 40.0%
CAATGGGGAGATTGAAATAG+AGG + chr1_4:46223124-46223143 Msa0165590:CDS 40.0%
TTGTGGAAATGATCAAGGAC+GGG - chr1_4:46223194-46223213 None:intergenic 40.0%
TCCACAAAATTCAGTCCACT+TGG + chr1_4:46223207-46223226 Msa0165590:CDS 40.0%
CCACAAAATTCAGTCCACTT+GGG + chr1_4:46223208-46223227 Msa0165590:CDS 40.0%
CACAAAATTCAGTCCACTTG+GGG + chr1_4:46223209-46223228 Msa0165590:CDS 40.0%
CCAGTGGACCAAAAACAAAA+AGG - chr1_4:46223259-46223278 None:intergenic 40.0%
!!! CCTTTTTGTTTTTGGTCCAC+TGG + chr1_4:46223256-46223275 Msa0165590:intron 40.0%
ACACCTCTTCGTATGTGTTT+AGG + chr1_4:46223386-46223405 Msa0165590:intron 40.0%
TGCAAAGGATGTAGAACGTA+AGG - chr1_4:46223434-46223453 None:intergenic 40.0%
TTCGTGAATCTGCATTTCGT+AGG - chr1_4:46223715-46223734 None:intergenic 40.0%
!! ATGTTAGGTTGATAACACGG+TGG + chr1_4:46223800-46223819 Msa0165590:intron 40.0%
!!! AGTGCTTTTCTTGTTTTCCG+TGG + chr1_4:46223827-46223846 Msa0165590:intron 40.0%
TTCCGTGGATTTAGTATTCG+TGG + chr1_4:46223842-46223861 Msa0165590:intron 40.0%
GAGCAATAAACAGAGGAACA+AGG - chr1_4:46223959-46223978 None:intergenic 40.0%
! TAGACTGGGTGTGATTTTTC+AGG + chr1_4:46223988-46224007 Msa0165590:intron 40.0%
!! AATTGTCAGAGGCATTGTTC+TGG + chr1_4:46224128-46224147 Msa0165590:intron 40.0%
!! ATTGTCAGAGGCATTGTTCT+GGG + chr1_4:46224129-46224148 Msa0165590:intron 40.0%
AGGTACAGTTAACTTCGGAT+GGG - chr1_4:46224223-46224242 None:intergenic 40.0%
AAGCCAGGTACAGTTAACTT+CGG - chr1_4:46224228-46224247 None:intergenic 40.0%
!! TTAACTGTACCTGGCTTTGT+GGG + chr1_4:46224231-46224250 Msa0165590:CDS 40.0%
! TATGTTTTTCCCACAAAGCC+AGG - chr1_4:46224243-46224262 None:intergenic 40.0%
CTTACCCCTATTTATAGGGA+TGG + chr1_4:46224422-46224441 Msa0165590:intron 40.0%
GTACCCATCCCTATAAATAG+GGG - chr1_4:46224429-46224448 None:intergenic 40.0%
CAGTACCCATCCCTATAAAT+AGG - chr1_4:46224431-46224450 None:intergenic 40.0%
CTATTTATAGGGATGGGTAC+TGG + chr1_4:46224429-46224448 Msa0165590:intron 40.0%
CATGAGAGTTATTGCAGTTC+AGG - chr1_4:46224662-46224681 None:intergenic 40.0%
CCTGTTGTTCATGAAACTTG+TGG - chr1_4:46224963-46224982 None:intergenic 40.0%
CCACAAGTTTCATGAACAAC+AGG + chr1_4:46224960-46224979 Msa0165590:intron 40.0%
ACAAGCAGAAACAACGATAG+GGG + chr1_4:46225201-46225220 Msa0165590:intron 40.0%
AACGATAGGGGTAGAAGAAT+AGG + chr1_4:46225213-46225232 Msa0165590:intron 40.0%
AAATGTTAGGTGGCAGCATA+CGG + chr1_4:46225333-46225352 Msa0165590:CDS 40.0%
TGTCGAGTTCCTGAAAGTTT+GGG - chr1_4:46225468-46225487 None:intergenic 40.0%
TAATATGAGACTTGACACGG+AGG + chr1_4:46225494-46225513 Msa0165590:intron 40.0%
!!! GGAATCACCTGTTTTTATCC+TGG + chr1_4:46225992-46226011 Msa0165590:intron 40.0%
CTCTGATGGTATAGCTACAA+AGG + chr1_4:46226060-46226079 Msa0165590:CDS 40.0%
AGCAGAAGTTACTACTGATG+TGG + chr1_4:46226249-46226268 Msa0165590:CDS 40.0%
AGGGAGAAATCTGATGAAGA+TGG + chr1_4:46226292-46226311 Msa0165590:CDS 40.0%
! GGTGATAATGATGACATGCT+TGG + chr1_4:46226313-46226332 Msa0165590:CDS 40.0%
! ATATTTGACTTCTCCGAGGA+AGG + chr1_4:46226340-46226359 Msa0165590:CDS 40.0%
TTTCAGATTCGTACCTTCCT+CGG - chr1_4:46226356-46226375 None:intergenic 40.0%
!! GTAGCATTTAGCTTGTTGCA+AGG - chr1_4:46226663-46226682 None:intergenic 40.0%
!! TGCTACTGACCATTGATTCA+AGG + chr1_4:46226677-46226696 Msa0165590:intron 40.0%
TAGAAGGTCAGAAGAATCAC+TGG - chr1_4:46226736-46226755 None:intergenic 40.0%
AGATTATTTGTGTGGCCACT+GGG + chr1_4:46226795-46226814 Msa0165590:intron 40.0%
AGAGTTTATAGAGTGGAGGA+AGG + chr1_4:46226860-46226879 Msa0165590:intron 40.0%
ACCAAAGCATAGCAGAATCG+CGG + chr1_4:46218702-46218721 Msa0165590:five_prime_UTR 45.0%
!! GATTTTCTAAAGGCCACCAC+CGG - chr1_4:46218934-46218953 None:intergenic 45.0%
AACAACGGTTCCAAGAGCAA+TGG + chr1_4:46218981-46219000 Msa0165590:CDS 45.0%
AGGAACGAATCCATTGCTCT+TGG - chr1_4:46218994-46219013 None:intergenic 45.0%
TGGAACCGATCGTAAAGATC+AGG + chr1_4:46219106-46219125 Msa0165590:CDS 45.0%
CACCGACATCGCATTAATTC+TGG - chr1_4:46219511-46219530 None:intergenic 45.0%
TAATGCGATGTCGGTGATGA+TGG + chr1_4:46219515-46219534 Msa0165590:intron 45.0%
GAATGATGCGTGAAGACAGT+TGG + chr1_4:46219683-46219702 Msa0165590:intron 45.0%
TTGTCGGAAAACACGAAGGT+GGG - chr1_4:46219733-46219752 None:intergenic 45.0%
TTTGTCGGAAAACACGAAGG+TGG - chr1_4:46219734-46219753 None:intergenic 45.0%
! GCTTTTGTCGGAAAACACGA+AGG - chr1_4:46219737-46219756 None:intergenic 45.0%
CTCCTACTCGGTTATTCCAA+TGG + chr1_4:46220244-46220263 Msa0165590:CDS 45.0%
! CTGACATTTTGCACTGTACC+AGG - chr1_4:46220445-46220464 None:intergenic 45.0%
AGTCCTCAAATAGTCGCTGT+GGG + chr1_4:46220595-46220614 Msa0165590:CDS 45.0%
AGCTACCCAATGGAGGAAAT+TGG - chr1_4:46220750-46220769 None:intergenic 45.0%
CAGGACACTGATACTTCATG+AGG + chr1_4:46220823-46220842 Msa0165590:intron 45.0%
ACTTATCCTGTGCCTCAGTT+GGG + chr1_4:46221015-46221034 Msa0165590:CDS 45.0%
! TCTAGCAAGCATTTGGCTTC+TGG + chr1_4:46221231-46221250 Msa0165590:CDS 45.0%
! CTAGCAAGCATTTGGCTTCT+GGG + chr1_4:46221232-46221251 Msa0165590:CDS 45.0%
! AGCCTGAATTCGGTGATACA+GGG - chr1_4:46221335-46221354 None:intergenic 45.0%
AGCGGTTGTGGCACAATTTA+GGG + chr1_4:46221693-46221712 Msa0165590:CDS 45.0%
! CGCAGATATAGGACTAGTGT+GGG - chr1_4:46221719-46221738 None:intergenic 45.0%
!!! GCGCTATGTTTTGATCAGAG+TGG + chr1_4:46221736-46221755 Msa0165590:CDS 45.0%
ACCCGATCCTTTCTTTGAGT+AGG - chr1_4:46221824-46221843 None:intergenic 45.0%
CGGGTTCTCAAAGCAATGAT+TGG + chr1_4:46221839-46221858 Msa0165590:CDS 45.0%
GACCAACAAAACCACTACCT+AGG - chr1_4:46222029-46222048 None:intergenic 45.0%
AGTTCCCTTGGAGGAAATGA+CGG - chr1_4:46222217-46222236 None:intergenic 45.0%
! TTTGTCCTTTCCCCTTTTGG+TGG + chr1_4:46222246-46222265 Msa0165590:CDS 45.0%
AACTGTCTCACCACCAAAAG+GGG - chr1_4:46222259-46222278 None:intergenic 45.0%
GAACTGTCTCACCACCAAAA+GGG - chr1_4:46222260-46222279 None:intergenic 45.0%
AGAACTGTCTCACCACCAAA+AGG - chr1_4:46222261-46222280 None:intergenic 45.0%
! AGAAGGACCTGTTCTTTTGC+CGG + chr1_4:46222302-46222321 Msa0165590:CDS 45.0%
GGAAAAACCGGCAAAAGAAC+AGG - chr1_4:46222312-46222331 None:intergenic 45.0%
CACCATGGTAGAGGAAAAAC+CGG - chr1_4:46222324-46222343 None:intergenic 45.0%
AAATGTGGAGTGAACCACCA+TGG - chr1_4:46222339-46222358 None:intergenic 45.0%
GAAAGAAAAGCAGGAGGTTG+GGG - chr1_4:46222396-46222415 None:intergenic 45.0%
CAGAAAGAAAAGCAGGAGGT+TGG - chr1_4:46222398-46222417 None:intergenic 45.0%
!! ACCTCCTGCTTTTCTTTCTG+TGG + chr1_4:46222398-46222417 Msa0165590:CDS 45.0%
ACCACAGAAAGAAAAGCAGG+AGG - chr1_4:46222402-46222421 None:intergenic 45.0%
TATGCATTGTGCGAATCAGG+AGG - chr1_4:46222546-46222565 None:intergenic 45.0%
CTGCCATCAATGACGATAGT+AGG - chr1_4:46222635-46222654 None:intergenic 45.0%
AAGTGGAACCTGTTCAATGG+TGG + chr1_4:46222727-46222746 Msa0165590:CDS 45.0%
AGTGGAACCTGTTCAATGGT+GGG + chr1_4:46222728-46222747 Msa0165590:CDS 45.0%
TTGTCACGTCTCAAATGCAG+AGG + chr1_4:46222902-46222921 Msa0165590:CDS 45.0%
! GCAGAGGTGCATATAAACTC+CGG + chr1_4:46222918-46222937 Msa0165590:CDS 45.0%
! CAGAGGTGCATATAAACTCC+GGG + chr1_4:46222919-46222938 Msa0165590:CDS 45.0%
!!! CCCAAGTGGACTGAATTTTG+TGG - chr1_4:46223211-46223230 None:intergenic 45.0%
! GTTTTACGTTGTTACGGCCA+AGG + chr1_4:46223613-46223632 Msa0165590:intron 45.0%
AACTGCATTGCACTGTATCG+TGG - chr1_4:46223740-46223759 None:intergenic 45.0%
CAGGTACAGTTAACTTCGGA+TGG - chr1_4:46224224-46224243 None:intergenic 45.0%
CATCCGAAGTTAACTGTACC+TGG + chr1_4:46224222-46224241 Msa0165590:CDS 45.0%
!! GTTAACTGTACCTGGCTTTG+TGG + chr1_4:46224230-46224249 Msa0165590:CDS 45.0%
AATCGTTCCAGCTAGGTCTT+TGG - chr1_4:46225028-46225047 None:intergenic 45.0%
! GGTTTGAAATCGTTCCAGCT+AGG - chr1_4:46225035-46225054 None:intergenic 45.0%
GATAGGGGTAGAAGAATAGG+AGG + chr1_4:46225216-46225235 Msa0165590:intron 45.0%
GACAAAAATGAGCAGAGGTC+TGG + chr1_4:46225425-46225444 Msa0165590:CDS 45.0%
CTGTCGAGTTCCTGAAAGTT+TGG - chr1_4:46225469-46225488 None:intergenic 45.0%
TTCAATATGGTATCTGCGCC+AGG - chr1_4:46225526-46225545 None:intergenic 45.0%
GGTGCCTCAAATTTCTCTGA+TGG + chr1_4:46226046-46226065 Msa0165590:CDS 45.0%
TTTGTGTGCGTGCATGTATG+TGG + chr1_4:46226422-46226441 Msa0165590:intron 45.0%
TTGTGTGCGTGCATGTATGT+GGG + chr1_4:46226423-46226442 Msa0165590:intron 45.0%
CAGATTATTTGTGTGGCCAC+TGG + chr1_4:46226794-46226813 Msa0165590:intron 45.0%
ACATAAAGAAACCCACCCAG+TGG - chr1_4:46226813-46226832 None:intergenic 45.0%
!!! TTAATTTTTTTGAATTTTTT+CGG + chr1_4:46219135-46219154 Msa0165590:intron 5.0%
!!! TTGAATTAAATATTTAATTT+AGG + chr1_4:46219368-46219387 Msa0165590:intron 5.0%
ACGGCGGCGATAAAAAACGA+CGG - chr1_4:46218813-46218832 None:intergenic 50.0%
!!! TTTTTTATCGCCGCCGTGCA+CGG + chr1_4:46218816-46218835 Msa0165590:five_prime_UTR 50.0%
AGAGTTGAAGACGACGGAGT+TGG - chr1_4:46218842-46218861 None:intergenic 50.0%
TGCATTAAGACGGCTTCCTC+CGG + chr1_4:46219038-46219057 Msa0165590:CDS 50.0%
! TTTACGATCGGTTCCATCGC+CGG - chr1_4:46219102-46219121 None:intergenic 50.0%
ACGTGTGTGGCAATCGAGTA+TGG + chr1_4:46219628-46219647 Msa0165590:intron 50.0%
CTGACCTCAAACTGTAGCAG+CGG + chr1_4:46220075-46220094 Msa0165590:intron 50.0%
AAGTCCGCTGCTACAGTTTG+AGG - chr1_4:46220082-46220101 None:intergenic 50.0%
! TGCTTTGGGCTTGCTTTGAC+AGG + chr1_4:46220188-46220207 Msa0165590:CDS 50.0%
TGCTTTGACAGGCTAGAGCT+CGG + chr1_4:46220199-46220218 Msa0165590:CDS 50.0%
TTTCAGCCTGAGCTTCGTTG+TGG - chr1_4:46220474-46220493 None:intergenic 50.0%
CAGTCCTCAAATAGTCGCTG+TGG + chr1_4:46220594-46220613 Msa0165590:CDS 50.0%
AGACCCACAGCGACTATTTG+AGG - chr1_4:46220601-46220620 None:intergenic 50.0%
CACTTATCCTGTGCCTCAGT+TGG + chr1_4:46221014-46221033 Msa0165590:CDS 50.0%
!! CGCTGCTTGGTGATGTTGAT+GGG - chr1_4:46221182-46221201 None:intergenic 50.0%
CCATCAACATCACCAAGCAG+CGG + chr1_4:46221180-46221199 Msa0165590:CDS 50.0%
! ATTCGGTGATACAGGGGAAC+TGG - chr1_4:46221328-46221347 None:intergenic 50.0%
TCCCCTGTATCACCGAATTC+AGG + chr1_4:46221330-46221349 Msa0165590:CDS 50.0%
! GCCTGAATTCGGTGATACAG+GGG - chr1_4:46221334-46221353 None:intergenic 50.0%
! CAGCCTGAATTCGGTGATAC+AGG - chr1_4:46221336-46221355 None:intergenic 50.0%
CTGTATCACCGAATTCAGGC+TGG + chr1_4:46221334-46221353 Msa0165590:CDS 50.0%
TCTACAGAAACAGATGCGGC+TGG + chr1_4:46221381-46221400 Msa0165590:CDS 50.0%
GAGCGGTTGTGGCACAATTT+AGG + chr1_4:46221692-46221711 Msa0165590:CDS 50.0%
! GCGCAGATATAGGACTAGTG+TGG - chr1_4:46221720-46221739 None:intergenic 50.0%
ATACTGCGGATGTCATGCCA+CGG - chr1_4:46221897-46221916 None:intergenic 50.0%
CGGAGAATAGCAGCATACTG+CGG - chr1_4:46221911-46221930 None:intergenic 50.0%
GTTGCCGTCATTTCCTCCAA+GGG + chr1_4:46222210-46222229 Msa0165590:CDS 50.0%
TCTCACCACCAAAAGGGGAA+AGG - chr1_4:46222254-46222273 None:intergenic 50.0%
!!! TGCCGGTTTTTCCTCTACCA+TGG + chr1_4:46222319-46222338 Msa0165590:CDS 50.0%
! CGGTTTTTCCTCTACCATGG+TGG + chr1_4:46222322-46222341 Msa0165590:CDS 50.0%
GGGAAAGTCTCAGTTCCATC+TGG + chr1_4:46222489-46222508 Msa0165590:CDS 50.0%
ACAGCAGAAACAGCACCAGA+TGG - chr1_4:46222507-46222526 None:intergenic 50.0%
GCGTATGCATTGTGCGAATC+AGG - chr1_4:46222549-46222568 None:intergenic 50.0%
TCATGCCATGGAACACTTGC+TGG + chr1_4:46222575-46222594 Msa0165590:CDS 50.0%
CAGACATCCCACCATTGAAC+AGG - chr1_4:46222738-46222757 None:intergenic 50.0%
! TCTATATCGGGGAGTACACC+TGG + chr1_4:46222789-46222808 Msa0165590:CDS 50.0%
AGGTGCATATAAACTCCGGG+AGG + chr1_4:46222922-46222941 Msa0165590:CDS 50.0%
ACTCCGGGAGGATACCAATT+TGG + chr1_4:46222934-46222953 Msa0165590:CDS 50.0%
CTGCCAAATTGGTATCCTCC+CGG - chr1_4:46222940-46222959 None:intergenic 50.0%
! TCTTTGGCGGATGTAAGTGC+TGG - chr1_4:46225012-46225031 None:intergenic 50.0%
GCTTCAGCTGCTGTAAGCAT+CGG - chr1_4:46225076-46225095 None:intergenic 50.0%
CAGCAGCTGAAGCTATAGCT+AGG + chr1_4:46225083-46225102 Msa0165590:intron 50.0%
TTGACACGGAGGATCAAACC+TGG + chr1_4:46225505-46225524 Msa0165590:intron 50.0%
TCAGATTTCTCCCTGCCAGA+GGG - chr1_4:46226286-46226305 None:intergenic 50.0%
ATCAGATTTCTCCCTGCCAG+AGG - chr1_4:46226287-46226306 None:intergenic 50.0%
TTATTTGTGTGGCCACTGGG+TGG + chr1_4:46226798-46226817 Msa0165590:intron 50.0%
TATTTGTGTGGCCACTGGGT+GGG + chr1_4:46226799-46226818 Msa0165590:intron 50.0%
GCCGCGATTCTGCTATGCTT+TGG - chr1_4:46218706-46218725 None:intergenic 55.0%
TCCGTCGCTGCTTCTATCTC+CGG + chr1_4:46219080-46219099 Msa0165590:CDS 55.0%
CCTCTCCCTGCAAAAGCAGA+GGG + chr1_4:46220355-46220374 Msa0165590:CDS 55.0%
!! CACAGCCCTCTGCTTTTGCA+GGG - chr1_4:46220363-46220382 None:intergenic 55.0%
!! TCACAGCCCTCTGCTTTTGC+AGG - chr1_4:46220364-46220383 None:intergenic 55.0%
GCAAAAGCAGAGGGCTGTGA+AGG + chr1_4:46220364-46220383 Msa0165590:CDS 55.0%
AGATGGCCACAACGAAGCTC+AGG + chr1_4:46220465-46220484 Msa0165590:CDS 55.0%
AGCGAAGAGCTACCCAATGG+AGG - chr1_4:46220757-46220776 None:intergenic 55.0%
TATCCTGTGCCTCAGTTGGG+TGG + chr1_4:46221018-46221037 Msa0165590:CDS 55.0%
ATCCTGTGCCTCAGTTGGGT+GGG + chr1_4:46221019-46221038 Msa0165590:CDS 55.0%
ATTCCTTGCCCACCCAACTG+AGG - chr1_4:46221030-46221049 None:intergenic 55.0%
TCAGTTGGGTGGGCAAGGAA+TGG + chr1_4:46221029-46221048 Msa0165590:CDS 55.0%
TTGGGTGGGCAAGGAATGGT+TGG + chr1_4:46221033-46221052 Msa0165590:CDS 55.0%
TGGGTGGGCAAGGAATGGTT+GGG + chr1_4:46221034-46221053 Msa0165590:CDS 55.0%
GCTATGGTCCGATGGCTGTA+GGG + chr1_4:46221067-46221086 Msa0165590:CDS 55.0%
GAGGCATAAGCTAACCACCG+TGG - chr1_4:46221093-46221112 None:intergenic 55.0%
!! GATGTTGATGGGCTGACAGC+AGG - chr1_4:46221171-46221190 None:intergenic 55.0%
!! CCGCTGCTTGGTGATGTTGA+TGG - chr1_4:46221183-46221202 None:intergenic 55.0%
ATCACCAAGCAGCGGAAACC+TGG + chr1_4:46221188-46221207 Msa0165590:CDS 55.0%
CCATAGCATATCGGGCTACC+AGG - chr1_4:46221209-46221228 None:intergenic 55.0%
CCTGGTAGCCCGATATGCTA+TGG + chr1_4:46221206-46221225 Msa0165590:CDS 55.0%
ACAGGGGAACTGGATCCATC+AGG - chr1_4:46221318-46221337 None:intergenic 55.0%
AGAAACAGATGCGGCTGGAG+TGG + chr1_4:46221386-46221405 Msa0165590:CDS 55.0%
CACCTTTACAAGCTCCACCG+TGG + chr1_4:46221877-46221896 Msa0165590:CDS 55.0%
TGCCACGGTGGAGCTTGTAA+AGG - chr1_4:46221882-46221901 None:intergenic 55.0%
GGTTGCCGTCATTTCCTCCA+AGG + chr1_4:46222209-46222228 Msa0165590:CDS 55.0%
GGAGTGAACCACCATGGTAG+AGG - chr1_4:46222333-46222352 None:intergenic 55.0%
GGTGGCAAAGCTGTTGATGC+TGG - chr1_4:46222371-46222390 None:intergenic 55.0%
GAAAAGCAGGAGGTTGGGGT+GGG - chr1_4:46222392-46222411 None:intergenic 55.0%
AGAAAAGCAGGAGGTTGGGG+TGG - chr1_4:46222393-46222412 None:intergenic 55.0%
! ATATCGGGGAGTACACCTGG+TGG + chr1_4:46222792-46222811 Msa0165590:CDS 55.0%
TCAGCAGTTTCCAGTCCACC+AGG - chr1_4:46222810-46222829 None:intergenic 55.0%
TTCAGTCCACTTGGGGTGAC+AGG + chr1_4:46223216-46223235 Msa0165590:CDS 55.0%
CTGTTACCTGTCACCCCAAG+TGG - chr1_4:46223225-46223244 None:intergenic 55.0%
ACATCCGCCAAAGACCTAGC+TGG + chr1_4:46225018-46225037 Msa0165590:intron 55.0%
CGTTCCAGCTAGGTCTTTGG+CGG - chr1_4:46225025-46225044 None:intergenic 55.0%
GGGTAGAAGAATAGGAGGCC+TGG + chr1_4:46225221-46225240 Msa0165590:intron 55.0%
GAAGTGATCTCAGCAGTGCC+AGG - chr1_4:46225242-46225261 None:intergenic 55.0%
ATTGGCAGCTTCTGGTGCTC+TGG + chr1_4:46225273-46225292 Msa0165590:intron 55.0%
TTGGCAGCTTCTGGTGCTCT+GGG + chr1_4:46225274-46225293 Msa0165590:intron 55.0%
TGTTAGGTGGCAGCATACGG+TGG + chr1_4:46225336-46225355 Msa0165590:CDS 55.0%
GTTAGGTGGCAGCATACGGT+GGG + chr1_4:46225337-46225356 Msa0165590:CDS 55.0%
GTTGCTGCCACCATCTACCA+CGG - chr1_4:46225393-46225412 None:intergenic 55.0%
! GTGGATTGTAGCAGTCCCTC+TGG + chr1_4:46226268-46226287 Msa0165590:CDS 55.0%
ATTGTAGCAGTCCCTCTGGC+AGG + chr1_4:46226272-46226291 Msa0165590:CDS 55.0%
TTGTAGCAGTCCCTCTGGCA+GGG + chr1_4:46226273-46226292 Msa0165590:CDS 55.0%
AGTCGCGGAACGCAGTCGAT+CGG - chr1_4:46218875-46218894 None:intergenic 60.0%
CGTTCCGCGACTTTCGTCGT+CGG + chr1_4:46218883-46218902 Msa0165590:five_prime_UTR 60.0%
ACTTTCGTCGTCGGCAGGGA+CGG + chr1_4:46218892-46218911 Msa0165590:five_prime_UTR 60.0%
CGGAATTCCCGGTCACTCAC+CGG + chr1_4:46218912-46218931 Msa0165590:five_prime_UTR 60.0%
AATTCCCGGTCACTCACCGG+TGG + chr1_4:46218915-46218934 Msa0165590:five_prime_UTR 60.0%
GGAGATAGAAGCAGCGACGG+AGG - chr1_4:46219081-46219100 None:intergenic 60.0%
GCCGGAGATAGAAGCAGCGA+CGG - chr1_4:46219084-46219103 None:intergenic 60.0%
GCTGCTTCTATCTCCGGCGA+TGG + chr1_4:46219086-46219105 Msa0165590:CDS 60.0%
GCCTCTCCCTGCAAAAGCAG+AGG + chr1_4:46220354-46220373 Msa0165590:CDS 60.0%
!! CCCTCTGCTTTTGCAGGGAG+AGG - chr1_4:46220358-46220377 None:intergenic 60.0%
GGGAGCGAAGAGCTACCCAA+TGG - chr1_4:46220760-46220779 None:intergenic 60.0%
GGGTGGGCAAGGAATGGTTG+GGG + chr1_4:46221035-46221054 Msa0165590:CDS 60.0%
GGCTATGGTCCGATGGCTGT+AGG + chr1_4:46221066-46221085 Msa0165590:CDS 60.0%
GCAGGAGGAGTCGGACTTTG+AGG - chr1_4:46221153-46221172 None:intergenic 60.0%
!! GTTGATGGGCTGACAGCAGG+AGG - chr1_4:46221168-46221187 None:intergenic 60.0%
GCTACCAGGTTTCCGCTGCT+TGG - chr1_4:46221195-46221214 None:intergenic 60.0%
TGGCAGCTTCTGGTGCTCTG+GGG + chr1_4:46225275-46225294 Msa0165590:intron 60.0%
GTGGGTGGGTCAGGCAACAA+TGG + chr1_4:46225355-46225374 Msa0165590:CDS 60.0%
GGTGGGTCAGGCAACAATGG+TGG + chr1_4:46225358-46225377 Msa0165590:CDS 60.0%
GGTCAGGCAACAATGGTGGC+AGG + chr1_4:46225362-46225381 Msa0165590:CDS 60.0%
GGCAACAATGGTGGCAGGCA+CGG + chr1_4:46225367-46225386 Msa0165590:CDS 60.0%
ACGACGGAGTTGGCCGTGCA+CGG - chr1_4:46218832-46218851 None:intergenic 65.0%
CCTGCCGACGACGAAAGTCG+CGG - chr1_4:46218890-46218909 None:intergenic 65.0%
CGCGACTTTCGTCGTCGGCA+GGG + chr1_4:46218888-46218907 Msa0165590:five_prime_UTR 65.0%
GTCGGCAGGGACGGAATTCC+CGG + chr1_4:46218901-46218920 Msa0165590:five_prime_UTR 65.0%
TGCCCACCCAACTGAGGCAC+AGG - chr1_4:46221024-46221043 None:intergenic 65.0%
GTGCCTCAGTTGGGTGGGCA+AGG + chr1_4:46221024-46221043 Msa0165590:CDS 65.0%
GTCCGATGGCTGTAGGGCCA+CGG + chr1_4:46221073-46221092 Msa0165590:CDS 65.0%
CACCGTGGCCCTACAGCCAT+CGG - chr1_4:46221078-46221097 None:intergenic 65.0%
GGGCTGACAGCAGGAGGAGT+CGG - chr1_4:46221162-46221181 None:intergenic 65.0%
CTGCGGATGTCATGCCACGG+TGG - chr1_4:46221894-46221913 None:intergenic 65.0%
AAGCAGGAGGTTGGGGTGGG+TGG - chr1_4:46222389-46222408 None:intergenic 65.0%
! GGGGAGTACACCTGGTGGAC+TGG + chr1_4:46222797-46222816 Msa0165590:CDS 65.0%
GGCAGCTTCTGGTGCTCTGG+GGG + chr1_4:46225276-46225295 Msa0165590:intron 65.0%
AGGTGGCAGCATACGGTGGG+TGG + chr1_4:46225340-46225359 Msa0165590:CDS 65.0%
GGTGGCAGCATACGGTGGGT+GGG + chr1_4:46225341-46225360 Msa0165590:CDS 65.0%
CAGCATACGGTGGGTGGGTC+AGG + chr1_4:46225346-46225365 Msa0165590:CDS 65.0%
ACGGAGTTGGCCGTGCACGG+CGG - chr1_4:46218829-46218848 None:intergenic 70.0%
CCGCGACTTTCGTCGTCGGC+AGG + chr1_4:46218887-46218906 Msa0165590:five_prime_UTR 70.0%
TCCCGGTCACTCACCGGTGG+TGG + chr1_4:46218918-46218937 Msa0165590:five_prime_UTR 70.0%
GCCACCACCGGTGAGTGACC+GGG - chr1_4:46218922-46218941 None:intergenic 70.0%
GGCCACCACCGGTGAGTGAC+CGG - chr1_4:46218923-46218942 None:intergenic 70.0%
TCCTCCGGCGTCCGAACTGC+CGG + chr1_4:46219053-46219072 Msa0165590:CDS 70.0%
! AGAAGCAGCGACGGAGGCGC+CGG - chr1_4:46219075-46219094 None:intergenic 70.0%
CGATGGCTGTAGGGCCACGG+TGG + chr1_4:46221076-46221095 Msa0165590:CDS 70.0%
AATGGTGGCAGGCACGGCCG+TGG + chr1_4:46225373-46225392 Msa0165590:CDS 70.0%
GCAGGCACGGCCGTGGTAGA+TGG + chr1_4:46225380-46225399 Msa0165590:CDS 70.0%
GGCACGGCCGTGGTAGATGG+TGG + chr1_4:46225383-46225402 Msa0165590:CDS 70.0%
!! CGACGGAGGCGCCGGCAGTT+CGG - chr1_4:46219067-46219086 None:intergenic 75.0%
! GCCGGCAGTTCGGACGCCGG+AGG - chr1_4:46219057-46219076 None:intergenic 80.0%
!!! GGCGCCGGCAGTTCGGACGC+CGG - chr1_4:46219060-46219079 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 46218599 46226914 46218599 ID=Msa0165590;Name=Msa0165590
chr1_4 mRNA 46218599 46226914 46218599 ID=Msa0165590-mRNA-1;Parent=Msa0165590;Name=Msa0165590-mRNA-1;_AED=0.20;_eAED=0.21;_QI=361|0.66|0.7|1|1|1|10|0|968
chr1_4 exon 46218599 46219127 46218599 ID=Msa0165590-mRNA-1:exon:13275;Parent=Msa0165590-mRNA-1
chr1_4 exon 46220187 46220630 46220187 ID=Msa0165590-mRNA-1:exon:13276;Parent=Msa0165590-mRNA-1
chr1_4 exon 46220967 46221407 46220967 ID=Msa0165590-mRNA-1:exon:13277;Parent=Msa0165590-mRNA-1
chr1_4 exon 46221667 46221912 46221667 ID=Msa0165590-mRNA-1:exon:13278;Parent=Msa0165590-mRNA-1
chr1_4 exon 46222171 46222968 46222171 ID=Msa0165590-mRNA-1:exon:13279;Parent=Msa0165590-mRNA-1
chr1_4 exon 46223062 46223237 46223062 ID=Msa0165590-mRNA-1:exon:13280;Parent=Msa0165590-mRNA-1
chr1_4 exon 46224137 46224267 46224137 ID=Msa0165590-mRNA-1:exon:13281;Parent=Msa0165590-mRNA-1
chr1_4 exon 46225333 46225457 46225333 ID=Msa0165590-mRNA-1:exon:13282;Parent=Msa0165590-mRNA-1
chr1_4 exon 46226037 46226361 46226037 ID=Msa0165590-mRNA-1:exon:13283;Parent=Msa0165590-mRNA-1
chr1_4 exon 46226862 46226914 46226862 ID=Msa0165590-mRNA-1:exon:13284;Parent=Msa0165590-mRNA-1
chr1_4 five_prime_UTR 46218599 46218959 46218599 ID=Msa0165590-mRNA-1:five_prime_utr;Parent=Msa0165590-mRNA-1
chr1_4 CDS 46218960 46219127 46218960 ID=Msa0165590-mRNA-1:cds;Parent=Msa0165590-mRNA-1
chr1_4 CDS 46220187 46220630 46220187 ID=Msa0165590-mRNA-1:cds;Parent=Msa0165590-mRNA-1
chr1_4 CDS 46220967 46221407 46220967 ID=Msa0165590-mRNA-1:cds;Parent=Msa0165590-mRNA-1
chr1_4 CDS 46221667 46221912 46221667 ID=Msa0165590-mRNA-1:cds;Parent=Msa0165590-mRNA-1
chr1_4 CDS 46222171 46222968 46222171 ID=Msa0165590-mRNA-1:cds;Parent=Msa0165590-mRNA-1
chr1_4 CDS 46223062 46223237 46223062 ID=Msa0165590-mRNA-1:cds;Parent=Msa0165590-mRNA-1
chr1_4 CDS 46224137 46224267 46224137 ID=Msa0165590-mRNA-1:cds;Parent=Msa0165590-mRNA-1
chr1_4 CDS 46225333 46225457 46225333 ID=Msa0165590-mRNA-1:cds;Parent=Msa0165590-mRNA-1
chr1_4 CDS 46226037 46226361 46226037 ID=Msa0165590-mRNA-1:cds;Parent=Msa0165590-mRNA-1
chr1_4 CDS 46226862 46226914 46226862 ID=Msa0165590-mRNA-1:cds;Parent=Msa0165590-mRNA-1
Gene Sequence

>Msa0165590

ATGAAGAAACAAGGAAAGAACAACAACGGTTCCAAGAGCAATGGATTCGTTCCTTCTTCTTTCAAGTTCATTTCGTCTTGCATTAAGACGGCTTCCTCCGGCGTCCGAACTGCCGGCGCCTCCGTCGCTGCTTCTATCTCCGGCGATGGAACCGATCGTAAAGATCAGGTGCTTTGGGCTTGCTTTGACAGGCTAGAGCTCGGTCTGTCTTCTTTCAAACGTGTACTCCTACTCGGTTATTCCAATGGATTTCAAGTTCTCGATGTGGAAGATGCCTCTAATATCAGGGAACTTGTCTCAAAACGTGATGATCCTGTTTCGTTTTTACAGATGCAGCCTCTCCCTGCAAAAGCAGAGGGCTGTGAAGGATTTAGAGCATCACATCCTTTACTCTTGGTTGTTGCATGTGATAAATCAAAGATACCTGGTACAGTGCAAAATGTCAGAGATGGCCACAACGAAGCTCAGGCTGAAAATATTATCAACTCAGCTACAACTGTTAGATTCTACTCACTAAGGTCCCATACCTATGTTCATGCTCTAAGATTCCGTTCAACTGTCTACATGGTTAGATGCAGTCCTCAAATAGTCGCTGTGGGTCTTGCTACTCAAATATACTGTTTTGATGCTCTTACTCTTGAGAATAAATTCAGTGTTCTCACTTATCCTGTGCCTCAGTTGGGTGGGCAAGGAATGGTTGGGGTTAATATTGGCTATGGTCCGATGGCTGTAGGGCCACGGTGGTTAGCTTATGCCTCCAACAACCCATTGTTGTTAAACACAAGTCGCTTAAGTCCTCAAAGTCCGACTCCTCCTGCTGTCAGCCCATCAACATCACCAAGCAGCGGAAACCTGGTAGCCCGATATGCTATGGAATCTAGCAAGCATTTGGCTTCTGGGCTGATCAATCTTAGTGATATGGGCTACAAAACACTGTCTAAATATTATCAAGATCTAATGCCTGATGGATCCAGTTCCCCTGTATCACCGAATTCAGGCTGGAAAGTTAGTCGATTTGCTTCAAATTCTACAGAAACAGATGCGGCTGGAGTGGTTGTTGTCAAGGATTTTGTTTCTAGAGCGGTTGTGGCACAATTTAGGGCCCACACTAGTCCTATATCTGCGCTATGTTTTGATCAGAGTGGAACACTTCTAGTTACAGCCTCAATTCATGGTAATAACATCAACATATTTCGAATTATGCCTTCCTACTCAAAGAAAGGATCGGGTTCTCAAAGCAATGATTGGAGTTGTTCTCATGTGCACCTTTACAAGCTCCACCGTGGCATGACATCCGCAGTAATACAAGATATTTGTTTTAGTCATTACAGTCAGTGGGTTGCCGTCATTTCCTCCAAGGGAACTTGTCATATTTTTGTCCTTTCCCCTTTTGGTGGTGAGACAGTTCTTAAGATACACAATCAGGACACAGAAGGACCTGTTCTTTTGCCGGTTTTTCCTCTACCATGGTGGTTCACTCCACATTTTACTGTAAACCAGCATCAACAGCTTTGCCACCCACCCCAACCTCCTGCTTTTCTTTCTGTGGTTAGCAGAATAAAAAATGTTAATGCCGGATGGCTTAATACGGTTAGTAATGTTTCATCTTCTGCAGCAGGGAAAGTCTCAGTTCCATCTGGTGCTGTTTCTGCTGTCTTTCATAGTTCTGTTCCTCCTGATTCGCACAATGCATACGCAAAAGTTCATGCCATGGAACACTTGCTGGTTTATACTCCTTCTGGTCACTTAATTCAGTATAACCTACTATCGTCATTGATGGCAGAGCCAAATGAAACTGCTTCAAGAACAGCTCAAGTTCCTTCACCACAGATACAAGAAGAAGATTTACGAGTGAAAGTGGAACCTGTTCAATGGTGGGATGTCTGTAGAAGATATGATTGGCAAGAAAAAGAGGTTTCTATATCGGGGAGTACACCTGGTGGACTGGAAACTGCTGAAATGATATTGGATGTTTCAAATTGTGAAAATTATAGTGTTGGGAATGATGATTCCATAAAACTTAATCAGGATTGTCACGTCTCAAATGCAGAGGTGCATATAAACTCCGGGAGGATACCAATTTGGCAGAAATCTGAGGTGTCTTTCTTTGTGATGGGTTCTTTTGAAACTGAAGAGCTGAATAAATGTGAACTTTTAACCAATGGGGAGATTGAAATAGAGGATATTCCTGTTAATGAGGTTGAAATAAGACAGAAGGTTTTGTTGCCCGTCCTTGATCATTTCCACAAAATTCAGTCCACTTGGGGTGACAGAGGCATTGTTCTGGGAAGATGCTCTAGCTCTTCATCTGATTCACATGCAACTGAAGAGAAGTTGTCAGAAGATGCTGCGATTTCCCATCCGAAGTTAACTGTACCTGGCTTTGTGGGAAAAACATATGTTGAAATGTTAGGTGGCAGCATACGGTGGGTGGGTCAGGCAACAATGGTGGCAGGCACGGCCGTGGTAGATGGTGGCAGCAACAGACAGTTGTTTGACAAAAATGAGCAGAGGTCTGGATATAATCAAGTTTCAGTAGGTGCCTCAAATTTCTCTGATGGTATAGCTACAAAGGTTAAATCATCAGAACATGGAAAAGTCAGTGACAATTTCAATTCAAGTTTTAGTGGTTCAGATATGAATATGCATGTTACTTGTGAGGAGTCAATACGTGACTCGCCAGACTATGATCAATTTTTTCAAGAGGGTTATTGTAAAGCATCAGTTGACTGTCATGAATCAGCAGAAGTTACTACTGATGTGGATTGTAGCAGTCCCTCTGGCAGGGAGAAATCTGATGAAGATGGTGATAATGATGACATGCTTGGTGATATATTTGACTTCTCCGAGGAAGAGTTTATAGAGTGGAGGAAGGAAAGAAACCAAGATTATGAAATTGCTCGTTAG
Protein sequence

>Msa0165590

MKKQGKNNNGSKSNGFVPSSFKFISSCIKTASSGVRTAGASVAASISGDGTDRKDQVLWACFDRLELGLSSFKRVLLLGYSNGFQVLDVEDASNIRELVSKRDDPVSFLQMQPLPAKAEGCEGFRASHPLLLVVACDKSKIPGTVQNVRDGHNEAQAENIINSATTVRFYSLRSHTYVHALRFRSTVYMVRCSPQIVAVGLATQIYCFDALTLENKFSVLTYPVPQLGGQGMVGVNIGYGPMAVGPRWLAYASNNPLLLNTSRLSPQSPTPPAVSPSTSPSSGNLVARYAMESSKHLASGLINLSDMGYKTLSKYYQDLMPDGSSSPVSPNSGWKVSRFASNSTETDAAGVVVVKDFVSRAVVAQFRAHTSPISALCFDQSGTLLVTASIHGNNINIFRIMPSYSKKGSGSQSNDWSCSHVHLYKLHRGMTSAVIQDICFSHYSQWVAVISSKGTCHIFVLSPFGGETVLKIHNQDTEGPVLLPVFPLPWWFTPHFTVNQHQQLCHPPQPPAFLSVVSRIKNVNAGWLNTVSNVSSSAAGKVSVPSGAVSAVFHSSVPPDSHNAYAKVHAMEHLLVYTPSGHLIQYNLLSSLMAEPNETASRTAQVPSPQIQEEDLRVKVEPVQWWDVCRRYDWQEKEVSISGSTPGGLETAEMILDVSNCENYSVGNDDSIKLNQDCHVSNAEVHINSGRIPIWQKSEVSFFVMGSFETEELNKCELLTNGEIEIEDIPVNEVEIRQKVLLPVLDHFHKIQSTWGDRGIVLGRCSSSSSDSHATEEKLSEDAAISHPKLTVPGFVGKTYVEMLGGSIRWVGQATMVAGTAVVDGGSNRQLFDKNEQRSGYNQVSVGASNFSDGIATKVKSSEHGKVSDNFNSSFSGSDMNMHVTCEESIRDSPDYDQFFQEGYCKASVDCHESAEVTTDVDCSSPSGREKSDEDGDNDDMLGDIFDFSEEEFIEWRKERNQDYEIAR*