AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0079790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079790 MtrunA17_Chr1g0191361 95.519 915 32 3 1 914 1 907 0.0 1798
Msa0079790 MtrunA17_Chr1g0196371 56.544 787 276 16 3 763 2 748 0.0 828
Msa0079790 MtrunA17_Chr2g0319371 37.786 831 417 22 12 787 27 812 1.26e-152 473
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079790 AT1G54710.1 52.941 952 365 17 4 914 18 927 0.0 870
Msa0079790 AT1G54710.2 52.148 838 328 14 118 914 1 806 0.0 767
Msa0079790 AT1G03380.1 52.335 835 323 19 1 795 1 800 0.0 766
Msa0079790 AT5G54730.1 33.333 789 403 26 1 759 1 696 7.53e-103 337
Msa0079790 AT5G54730.2 33.486 654 324 22 131 759 17 584 2.78e-86 290

Find 243 sgRNAs with CRISPR-Local

Find 632 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTAATTTAGGTTAATTT+TGG 0.138683 1_2:-57814686 Msa0079790:intron
GAGCGGTTGTGGCACAATTT+AGG 0.179862 1_2:-57812372 Msa0079790:CDS
TCTAGCAAGCATTTGGCTTC+TGG 0.212143 1_2:-57812833 Msa0079790:CDS
ACCTCAGATTTCTGCCAAAT+TGG 0.244250 1_2:+57811119 None:intergenic
GCTGATCAATCTTAGTGATA+TGG 0.272322 1_2:-57812810 Msa0079790:CDS
CCGCTGCTTGGTGATGTTGA+TGG 0.280443 1_2:+57812884 None:intergenic
ATCACAACCGTCTTCGTTAA+AGG 0.281183 1_2:-57815317 Msa0079790:five_prime_UTR
CTTATTTCAACCTCATTAAC+AGG 0.291043 1_2:+57810915 None:intergenic
AGCGGTTGTGGCACAATTTA+GGG 0.293715 1_2:-57812371 Msa0079790:CDS
TTGCTGGTTTATACTCCTTC+TGG 0.302626 1_2:-57811473 Msa0079790:CDS
GTTCTTGAAGCAGTTTCATT+TGG 0.318173 1_2:+57811407 None:intergenic
CTAGTTACAGCCTCAATTCA+TGG 0.319946 1_2:-57812298 Msa0079790:CDS
CTAGCAAGCATTTGGCTTCT+GGG 0.324176 1_2:-57812832 Msa0079790:CDS
CACTTATCCTGTGCCTCAGT+TGG 0.327207 1_2:-57813050 Msa0079790:CDS
GCGTATGCATTGTGCGAATC+AGG 0.330024 1_2:+57811518 None:intergenic
TCATGCCATGGAACACTTGC+TGG 0.331523 1_2:-57811489 Msa0079790:CDS
GGAAACTGCTGAAATGATAT+TGG 0.334443 1_2:-57811249 Msa0079790:CDS
TGGAAGATGCCTCTAATATC+AGG 0.335031 1_2:-57813780 Msa0079790:CDS
GTCGGCAGGGACGGAATTCC+CGG 0.336411 1_2:-57815163 Msa0079790:five_prime_UTR
GCGCAGATATAGGACTAGTA+TGG 0.338742 1_2:+57812347 None:intergenic
GGAATGGTTGGGGTTAATAT+TGG 0.344344 1_2:-57813019 Msa0079790:CDS
CAGCCTGAATTCGGTGATAC+AGG 0.346522 1_2:+57812731 None:intergenic
CGCTGCTTGGTGATGTTGAT+GGG 0.347448 1_2:+57812885 None:intergenic
TCCCCTGTATCACCGAATTC+AGG 0.357654 1_2:-57812734 Msa0079790:CDS
TGATTCCATAAAACTTAATC+AGG 0.358708 1_2:-57811189 Msa0079790:CDS
AATTGTCAGAGGCATTGTTC+TGG 0.359360 1_2:-57809939 Msa0079790:intron
GACAAGTTCCCTGATATTAG+AGG 0.368128 1_2:+57813771 None:intergenic
TTAGGTGTCTTTCTTTGTGA+TGG 0.368906 1_2:-57811009 Msa0079790:intron
ACTCCGGGAGGATACCAATT+TGG 0.373742 1_2:-57811133 Msa0079790:CDS
TGCTAGATTCCATAGCATAT+CGG 0.384870 1_2:+57812849 None:intergenic
CGACGGAGGCGCCGGCAGTT+CGG 0.385134 1_2:+57815000 None:intergenic
CCGCGACTTTCGTCGTCGGC+AGG 0.386720 1_2:-57815177 Msa0079790:five_prime_UTR
TTGGGTGGGCAAGGAATGGT+TGG 0.394175 1_2:-57813031 Msa0079790:CDS
AGAAGCAGCGACGGAGGCGC+CGG 0.397817 1_2:+57814992 None:intergenic
CTAACTTTCCAGCCTGAATT+CGG 0.399263 1_2:+57812722 None:intergenic
AGAAAGAAAAGCAGGAGGTT+GGG 0.404547 1_2:+57811670 None:intergenic
GACTTGTGTTTAACAACAAT+GGG 0.406696 1_2:+57812945 None:intergenic
TCAAAACATAGCGCAGATAT+AGG 0.408648 1_2:+57812337 None:intergenic
GCTACCAGGTTTCCGCTGCT+TGG 0.417730 1_2:+57812872 None:intergenic
TAGGTGTCTTTCTTTGTGAT+GGG 0.424566 1_2:-57811008 Msa0079790:CDS
TGGGTGGGCAAGGAATGGTT+GGG 0.424586 1_2:-57813030 Msa0079790:CDS
ATTGTGAAAATTATAGTGTT+GGG 0.425168 1_2:-57811217 Msa0079790:CDS
AATTGTGAAAATTATAGTGT+TGG 0.429375 1_2:-57811218 Msa0079790:CDS
GGCCACCACCGGTGAGTGAC+CGG 0.430899 1_2:+57815144 None:intergenic
TTCAGTCCACTTGGGGTGAC+AGG 0.431138 1_2:-57810851 Msa0079790:intron
GCCGCGATTCTGCTATGCTT+TGG 0.433374 1_2:+57815361 None:intergenic
AGCATCACATCCTTTACTCT+TGG 0.434935 1_2:-57813671 Msa0079790:CDS
GCAGGAGGAGTCGGACTTTG+AGG 0.438368 1_2:+57812914 None:intergenic
AATGTTTCATCTTCTGCAGC+AGG 0.443523 1_2:-57811596 Msa0079790:CDS
ATTGTCAGAGGCATTGTTCT+GGG 0.446262 1_2:-57809938 Msa0079790:intron
TCCTCCGGCGTCCGAACTGC+CGG 0.446318 1_2:-57815011 Msa0079790:CDS
CGGGTTCTCAAAGCAATGAT+TGG 0.446623 1_2:-57812225 Msa0079790:CDS
TAACCTACTATCGTCATTGA+TGG 0.448610 1_2:-57811435 Msa0079790:CDS
TATGGAATCTAGCAAGCATT+TGG 0.451298 1_2:-57812840 Msa0079790:CDS
CTGATCAATCTTAGTGATAT+GGG 0.453531 1_2:-57812809 Msa0079790:CDS
ATTCGGTGATACAGGGGAAC+TGG 0.455908 1_2:+57812739 None:intergenic
CTCTATTTCAATCTCCCCAT+TGG 0.457148 1_2:+57810944 None:intergenic
TTAACTGTACCTGGCTTTGT+GGG 0.458457 1_2:-57809836 Msa0079790:CDS
AAGCAGGAGGTTGGGGTGGG+TGG 0.460095 1_2:+57811678 None:intergenic
CAATGGGGAGATTGAAATAG+AGG 0.461586 1_2:-57810943 Msa0079790:CDS
CGACTTGTGTTTAACAACAA+TGG 0.461697 1_2:+57812944 None:intergenic
AGAAAAGCAGGAGGTTGGGG+TGG 0.461895 1_2:+57811674 None:intergenic
CATCCGAAGTTAACTGTACC+TGG 0.462498 1_2:-57809845 Msa0079790:CDS
CACAAAATTCAGTCCACTTG+GGG 0.463372 1_2:-57810858 Msa0079790:CDS
ACTTATCCTGTGCCTCAGTT+GGG 0.463385 1_2:-57813049 Msa0079790:CDS
GTTAACTGTACCTGGCTTTG+TGG 0.465939 1_2:-57809837 Msa0079790:CDS
ATTGTAGCAGTCCCTCTGGC+AGG 0.468310 1_2:-57806804 Msa0079790:CDS
AGACCCACAGCGACTATTTG+AGG 0.470535 1_2:+57813466 None:intergenic
GCTAGATTCCATAGCATATC+GGG 0.471561 1_2:+57812850 None:intergenic
GTGCCTCAGTTGGGTGGGCA+AGG 0.473182 1_2:-57813040 Msa0079790:CDS
TTTACGATCGGTTCCATCGC+CGG 0.473917 1_2:+57814965 None:intergenic
GGTGGCAAAGCTGTTGATGC+TGG 0.477418 1_2:+57811696 None:intergenic
GGGGAGTACACCTGGTGGAC+TGG 0.477946 1_2:-57811270 Msa0079790:CDS
AGAACTGTCTCACCACCAAA+AGG 0.478321 1_2:+57811806 None:intergenic
CCATAGCATATCGGGCTACC+AGG 0.479379 1_2:+57812858 None:intergenic
AGAAGATTTACGAGTGAAAG+TGG 0.482850 1_2:-57811357 Msa0079790:CDS
CAGACATCCCACCATTGAAC+AGG 0.484714 1_2:+57811332 None:intergenic
GAAAGAAAAGCAGGAGGTTG+GGG 0.484867 1_2:+57811671 None:intergenic
ATCGAGAACTTGAAATCCAT+TGG 0.485519 1_2:+57813804 None:intergenic
TCCTACTCAAAGAAAGGATC+GGG 0.486675 1_2:-57812244 Msa0079790:CDS
TTTCAGATTCGTACCTTCCT+CGG 0.487984 1_2:+57806723 None:intergenic
TATCCTGTGCCTCAGTTGGG+TGG 0.488213 1_2:-57813046 Msa0079790:CDS
TCCACAAAATTCAGTCCACT+TGG 0.488720 1_2:-57810860 Msa0079790:CDS
TCAGTTGGGTGGGCAAGGAA+TGG 0.489898 1_2:-57813035 Msa0079790:CDS
CTGCCATCAATGACGATAGT+AGG 0.491239 1_2:+57811432 None:intergenic
ATTCCGTTCAACTGTCTACA+TGG 0.494684 1_2:-57813500 Msa0079790:CDS
TCCCGGTCACTCACCGGTGG+TGG 0.495181 1_2:-57815146 Msa0079790:five_prime_UTR
AGATGGCCACAACGAAGCTC+AGG 0.495493 1_2:-57813599 Msa0079790:CDS
CCACAAAATTCAGTCCACTT+GGG 0.496716 1_2:-57810859 Msa0079790:CDS
GTTTAACAACAATGGGTTGT+TGG 0.498232 1_2:+57812952 None:intergenic
ACTTTCGTCGTCGGCAGGGA+CGG 0.498434 1_2:-57815172 Msa0079790:five_prime_UTR
CTCCTACTCGGTTATTCCAA+TGG 0.498897 1_2:-57813820 Msa0079790:CDS
AGGAACGAATCCATTGCTCT+TGG 0.500705 1_2:+57815073 None:intergenic
TGCATTAAGACGGCTTCCTC+CGG 0.501805 1_2:-57815026 Msa0079790:CDS
GGGTGGGCAAGGAATGGTTG+GGG 0.508582 1_2:-57813029 Msa0079790:CDS
ATGCCTTCCTACTCAAAGAA+AGG 0.510586 1_2:-57812250 Msa0079790:CDS
GTCCGATGGCTGTAGGGCCA+CGG 0.511127 1_2:-57812991 Msa0079790:CDS
TGGAACCGATCGTAAAGATC+AGG 0.512333 1_2:-57814958 Msa0079790:intron
CAGGTACAGTTAACTTCGGA+TGG 0.512564 1_2:+57809846 None:intergenic
GAACTGTCTCACCACCAAAA+GGG 0.513131 1_2:+57811807 None:intergenic
TAATGCCGGATGGCTTAATA+CGG 0.513868 1_2:-57811624 Msa0079790:CDS
TGCTTTGACAGGCTAGAGCT+CGG 0.514606 1_2:-57813865 Msa0079790:intron
AGAGTTGAAGACGACGGAGT+TGG 0.515686 1_2:+57815225 None:intergenic
GTTGGGGTTAATATTGGCTA+TGG 0.515823 1_2:-57813013 Msa0079790:CDS
GGCTATGGTCCGATGGCTGT+AGG 0.516684 1_2:-57812998 Msa0079790:CDS
CAGAAAGAAAAGCAGGAGGT+TGG 0.520924 1_2:+57811669 None:intergenic
GAAATGAACTTGAAAGAAGA+AGG 0.522169 1_2:+57815053 None:intergenic
TTAGAGCATGAACATAGGTA+TGG 0.523088 1_2:+57813524 None:intergenic
GGGAAAGTCTCAGTTCCATC+TGG 0.523092 1_2:-57811575 Msa0079790:CDS
TGCCCACCCAACTGAGGCAC+AGG 0.523609 1_2:+57813043 None:intergenic
CACCGTGGCCCTACAGCCAT+CGG 0.523773 1_2:+57812989 None:intergenic
ATCCTGTGCCTCAGTTGGGT+GGG 0.527851 1_2:-57813045 Msa0079790:CDS
TGAGGTTGAAATAAGACAGA+AGG 0.528495 1_2:-57810907 Msa0079790:CDS
ATCACCAAGCAGCGGAAACC+TGG 0.529348 1_2:-57812876 Msa0079790:CDS
TCCGTCGCTGCTTCTATCTC+CGG 0.530686 1_2:-57814984 Msa0079790:CDS
TCTATATCGGGGAGTACACC+TGG 0.530880 1_2:-57811278 Msa0079790:CDS
CTCTGATGGTATAGCTACAA+AGG 0.532244 1_2:-57807016 Msa0079790:CDS
GCCTCTCCCTGCAAAAGCAG+AGG 0.532861 1_2:-57813710 Msa0079790:CDS
ACAGGGGAACTGGATCCATC+AGG 0.534199 1_2:+57812749 None:intergenic
AGTTCTTAAGATACACAATC+AGG 0.535021 1_2:-57811789 Msa0079790:CDS
TTGTGGAAATGATCAAGGAC+GGG 0.536944 1_2:+57810876 None:intergenic
CCTGGTAGCCCGATATGCTA+TGG 0.538012 1_2:-57812858 Msa0079790:CDS
CTGTATCACCGAATTCAGGC+TGG 0.539993 1_2:-57812730 Msa0079790:CDS
TTCAAACGTGTACTCCTACT+CGG 0.540235 1_2:-57813832 Msa0079790:CDS
AGAGGATATTCCTGTTAATG+AGG 0.541213 1_2:-57810925 Msa0079790:CDS
TCAGCAGTTTCCAGTCCACC+AGG 0.541618 1_2:+57811260 None:intergenic
GATGTTGATGGGCTGACAGC+AGG 0.541983 1_2:+57812896 None:intergenic
CTGCCAAATTGGTATCCTCC+CGG 0.543872 1_2:+57811130 None:intergenic
TCTTCTTCTTGTATCTGTGA+AGG 0.545835 1_2:+57811374 None:intergenic
CGCGACTTTCGTCGTCGGCA+GGG 0.546160 1_2:-57815176 Msa0079790:five_prime_UTR
GAAAAGCAGGAGGTTGGGGT+GGG 0.546994 1_2:+57811675 None:intergenic
TAACAACAATGGGTTGTTGG+AGG 0.547432 1_2:+57812955 None:intergenic
CGACATTATCGAAAATGTGT+GGG 0.547590 1_2:-57815426 Msa0079790:five_prime_UTR
AGCCTGAATTCGGTGATACA+GGG 0.548808 1_2:+57812732 None:intergenic
GCTATGGTCCGATGGCTGTA+GGG 0.549410 1_2:-57812997 Msa0079790:CDS
ATATTTGACTTCTCCGAGGA+AGG 0.549457 1_2:-57806736 Msa0079790:intron
AGAAACAGATGCGGCTGGAG+TGG 0.550843 1_2:-57812678 Msa0079790:intron
GCAAAAGCAGAGGGCTGTGA+AGG 0.551367 1_2:-57813700 Msa0079790:CDS
AATATGACAAGTTCCCTTGG+AGG 0.552210 1_2:+57811841 None:intergenic
CGGAATTCCCGGTCACTCAC+CGG 0.552380 1_2:-57815152 Msa0079790:five_prime_UTR
CTGTTAGATTCTACTCACTA+AGG 0.552645 1_2:-57813549 Msa0079790:CDS
GTGGATTGTAGCAGTCCCTC+TGG 0.554454 1_2:-57806808 Msa0079790:CDS
CGCAGATATAGGACTAGTAT+GGG 0.554454 1_2:+57812348 None:intergenic
TATCAAGATCTAATGCCTGA+TGG 0.555177 1_2:-57812764 Msa0079790:CDS
TTCCTACTCAAAGAAAGGAT+CGG 0.557533 1_2:-57812245 Msa0079790:CDS
GCTGCTTCTATCTCCGGCGA+TGG 0.557714 1_2:-57814978 Msa0079790:CDS
GGGCTGACAGCAGGAGGAGT+CGG 0.558059 1_2:+57812905 None:intergenic
GGTGCCTCAAATTTCTCTGA+TGG 0.559962 1_2:-57807030 Msa0079790:CDS
TATACCATCAGAGAAATTTG+AGG 0.562160 1_2:+57807026 None:intergenic
TTCGGTTATTTGAGTTGTGG+TGG 0.562449 1_2:+57815279 None:intergenic
CCTCTCCCTGCAAAAGCAGA+GGG 0.565243 1_2:-57813709 Msa0079790:CDS
CATGCAACAACCAAGAGTAA+AGG 0.565496 1_2:+57813661 None:intergenic
CAGAGGTGCATATAAACTCC+GGG 0.565872 1_2:-57811148 Msa0079790:CDS
TCTACAGAAACAGATGCGGC+TGG 0.565883 1_2:-57812683 Msa0079790:CDS
TGCTACCTGATCTTTACGAT+CGG 0.565956 1_2:+57814953 None:intergenic
GGAGTGAACCACCATGGTAG+AGG 0.566226 1_2:+57811734 None:intergenic
ACGACGGAGTTGGCCGTGCA+CGG 0.566507 1_2:+57815235 None:intergenic
AATTTGACCTTTAACGAAGA+CGG 0.566522 1_2:+57815310 None:intergenic
GGTTGCCGTCATTTCCTCCA+AGG 0.572748 1_2:-57811855 Msa0079790:CDS
CTAACCACAGAAAGAAAAGC+AGG 0.573795 1_2:+57811662 None:intergenic
GCCACCACCGGTGAGTGACC+GGG 0.574100 1_2:+57815145 None:intergenic
ACAGTGCAAAATGTCAAAGA+TGG 0.575048 1_2:-57813616 Msa0079790:CDS
CATTTCGTCTTGCATTAAGA+CGG 0.575776 1_2:-57815036 Msa0079790:CDS
GATCCTTTCTTTGAGTAGGA+AGG 0.577226 1_2:+57812247 None:intergenic
ATCAGATTTCTCCCTGCCAG+AGG 0.577582 1_2:+57806792 None:intergenic
AACTGTCTCACCACCAAAAG+GGG 0.579524 1_2:+57811808 None:intergenic
GCAGAGGTGCATATAAACTC+CGG 0.580890 1_2:-57811149 Msa0079790:CDS
ACTAACCGTATTAAGCCATC+CGG 0.582236 1_2:+57811619 None:intergenic
TGCCACGGTGGAGCTTGTAA+AGG 0.583238 1_2:+57812185 None:intergenic
CGTTCCGCGACTTTCGTCGT+CGG 0.585286 1_2:-57815181 Msa0079790:five_prime_UTR
GTGTTCGGTTATTTGAGTTG+TGG 0.585857 1_2:+57815276 None:intergenic
CTGTTACCTGTCACCCCAAG+TGG 0.588510 1_2:+57810845 None:intergenic
TAATATTGGCTATGGTCCGA+TGG 0.588529 1_2:-57813005 Msa0079790:CDS
TCAGATTTCTCCCTGCCAGA+GGG 0.589490 1_2:+57806793 None:intergenic
TACTGAATTAAGTGACCAGA+AGG 0.590764 1_2:+57811458 None:intergenic
AGCAGAAGTTACTACTGATG+TGG 0.591016 1_2:-57806827 Msa0079790:CDS
TTTCAGCCTGAGCTTCGTTG+TGG 0.591381 1_2:+57813593 None:intergenic
GGAGATAGAAGCAGCGACGG+AGG 0.591766 1_2:+57814986 None:intergenic
TAGAGCATGAACATAGGTAT+GGG 0.591981 1_2:+57813525 None:intergenic
GGCGCCGGCAGTTCGGACGC+CGG 0.593055 1_2:+57815007 None:intergenic
TTTGTGGAAATGATCAAGGA+CGG 0.594219 1_2:+57810875 None:intergenic
CAGTCCTCAAATAGTCGCTG+TGG 0.595369 1_2:-57813470 Msa0079790:CDS
ATAAACCAGCAAGTGTTCCA+TGG 0.597706 1_2:+57811484 None:intergenic
GTAGCATTTAGCTTGTTGCA+AGG 0.597915 1_2:+57806416 None:intergenic
TGAAAGTGGAACCTGTTCAA+TGG 0.597917 1_2:-57811343 Msa0079790:CDS
GTTGCCGTCATTTCCTCCAA+GGG 0.598398 1_2:-57811854 Msa0079790:CDS
AGTCGCGGAACGCAGTCGAT+CGG 0.599963 1_2:+57815192 None:intergenic
ACGACATTATCGAAAATGTG+TGG 0.601636 1_2:-57815427 Msa0079790:five_prime_UTR
TTGTAGCAGTCCCTCTGGCA+GGG 0.602924 1_2:-57806803 Msa0079790:CDS
ACAGCAGAAACAGCACCAGA+TGG 0.603039 1_2:+57811560 None:intergenic
AGTTCCCTTGGAGGAAATGA+CGG 0.606767 1_2:+57811850 None:intergenic
GATGTTATTACCATGAATTG+AGG 0.608809 1_2:+57812288 None:intergenic
ATGTTTCATCTTCTGCAGCA+GGG 0.610620 1_2:-57811595 Msa0079790:CDS
AACAACGGTTCCAAGAGCAA+TGG 0.619032 1_2:-57815083 Msa0079790:CDS
GAATCTTAGAGCATGAACAT+AGG 0.620118 1_2:+57813519 None:intergenic
GGTGATAATGATGACATGCT+TGG 0.621093 1_2:-57806763 Msa0079790:CDS
ACCAATTTGGCAGAAATCTG+AGG 0.621938 1_2:-57811120 Msa0079790:intron
GGAAGATGCCTCTAATATCA+GGG 0.623650 1_2:-57813779 Msa0079790:CDS
GCCGGAGATAGAAGCAGCGA+CGG 0.627399 1_2:+57814983 None:intergenic
GCCGGCAGTTCGGACGCCGG+AGG 0.628097 1_2:+57815010 None:intergenic
TCTCACCACCAAAAGGGGAA+AGG 0.628650 1_2:+57811813 None:intergenic
ACCCGATCCTTTCTTTGAGT+AGG 0.631333 1_2:+57812243 None:intergenic
AGGGAGAAATCTGATGAAGA+TGG 0.631588 1_2:-57806784 Msa0079790:CDS
TAACCATGTAGACAGTTGAA+CGG 0.635643 1_2:+57813497 None:intergenic
AAGTGGAACCTGTTCAATGG+TGG 0.635842 1_2:-57811340 Msa0079790:CDS
ATGTCTGTAGAAGATATGAT+TGG 0.636891 1_2:-57811316 Msa0079790:CDS
ATACACAATCAGGACACAGA+AGG 0.639988 1_2:-57811779 Msa0079790:CDS
ATTCCTTGCCCACCCAACTG+AGG 0.642669 1_2:+57813037 None:intergenic
AAGCCAGGTACAGTTAACTT+CGG 0.644189 1_2:+57809842 None:intergenic
AGTCCTCAAATAGTCGCTGT+GGG 0.644493 1_2:-57813469 Msa0079790:CDS
TGCTGGTTTACAGTAAAATG+TGG 0.645882 1_2:+57811713 None:intergenic
AGGTACAGTTAACTTCGGAT+GGG 0.646044 1_2:+57809847 None:intergenic
TGGATTTCAAGTTCTCGATG+TGG 0.646580 1_2:-57813800 Msa0079790:CDS
TGTGATAAATCAAAGATACC+TGG 0.646678 1_2:-57813640 Msa0079790:CDS
ACCAAAGCATAGCAGAATCG+CGG 0.648729 1_2:-57815362 Msa0079790:five_prime_UTR
GCCTGAATTCGGTGATACAG+GGG 0.657469 1_2:+57812733 None:intergenic
TTGTCACGTCTCAAATGCAG+AGG 0.660933 1_2:-57811165 Msa0079790:CDS
ATCCATTGGAATAACCGAGT+AGG 0.661164 1_2:+57813818 None:intergenic
AATTCCCGGTCACTCACCGG+TGG 0.662119 1_2:-57815149 Msa0079790:five_prime_UTR
TGCATAAGAGTTGAAGACGA+CGG 0.663554 1_2:+57815219 None:intergenic
CGATGGCTGTAGGGCCACGG+TGG 0.664390 1_2:-57812988 Msa0079790:CDS
ATCGTGTAGATGAAGAAACA+AGG 0.665373 1_2:-57815113 Msa0079790:exon
AGTGGAACCTGTTCAATGGT+GGG 0.666683 1_2:-57811339 Msa0079790:CDS
AAGGTTAAATCATCAGAACA+TGG 0.666854 1_2:-57806997 Msa0079790:CDS
CCTGCCGACGACGAAAGTCG+CGG 0.667594 1_2:+57815177 None:intergenic
TATGCATTGTGCGAATCAGG+AGG 0.673488 1_2:+57811521 None:intergenic
GACATTATCGAAAATGTGTG+GGG 0.676520 1_2:-57815425 Msa0079790:five_prime_UTR
CCATCAACATCACCAAGCAG+CGG 0.680372 1_2:-57812884 Msa0079790:CDS
ATACGCAAAAGTTCATGCCA+TGG 0.683570 1_2:-57811501 Msa0079790:CDS
AAATGTGGAGTGAACCACCA+TGG 0.691383 1_2:+57811728 None:intergenic
ACGGAGTTGGCCGTGCACGG+CGG 0.691410 1_2:+57815238 None:intergenic
AAATTCTACAGAAACAGATG+CGG 0.692764 1_2:-57812687 Msa0079790:CDS
ATACTGCGGATGTCATGCCA+CGG 0.696634 1_2:+57812170 None:intergenic
GAATATGCATGTTACTTGTG+AGG 0.697394 1_2:-57806929 Msa0079790:CDS
AAACAAGGAAAGAACAACAA+CGG 0.698484 1_2:-57815098 Msa0079790:CDS
CTGCGGATGTCATGCCACGG+TGG 0.707398 1_2:+57812173 None:intergenic
ACCACAGAAAGAAAAGCAGG+AGG 0.715286 1_2:+57811665 None:intergenic
TGATATATTTGACTTCTCCG+AGG 0.718503 1_2:-57806740 Msa0079790:CDS
GTTGATGGGCTGACAGCAGG+AGG 0.724183 1_2:+57812899 None:intergenic
CACCTTTACAAGCTCCACCG+TGG 0.728912 1_2:-57812187 Msa0079790:CDS
AGGTGCATATAAACTCCGGG+AGG 0.742328 1_2:-57811145 Msa0079790:CDS
ATATCGGGGAGTACACCTGG+TGG 0.750372 1_2:-57811275 Msa0079790:CDS
GAGGCATAAGCTAACCACCG+TGG 0.793825 1_2:+57812974 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTAATTTAGGTTAATTT+TGG - chr1_2:57807202-57807221 Msa0079790:intron 10.0%
!! AATAAATTAGAATATTTGTT+TGG - chr1_2:57807289-57807308 Msa0079790:intron 10.0%
!! TTTATTTAAATGTTATAACT+AGG - chr1_2:57811400-57811419 Msa0079790:CDS 10.0%
!!! CATTAATTTTAATTTTCAAA+GGG + chr1_2:57812460-57812479 None:intergenic 10.0%
!!! TTTTTTTTTAAAGAAATGTT+AGG - chr1_2:57813142-57813161 Msa0079790:intron 10.0%
!! TGAATCTAAATAAAATTAAA+AGG + chr1_2:57815198-57815217 None:intergenic 10.0%
!! AAAATGTGTATAAAATAAAA+AGG - chr1_2:57815269-57815288 Msa0079790:five_prime_UTR 10.0%
!! AAGTAAGTTATTTAAAAAGT+TGG - chr1_2:57807711-57807730 Msa0079790:intron 15.0%
!!! TGTTTGAATATTTTAAATGA+GGG + chr1_2:57808604-57808623 None:intergenic 15.0%
!!! ATGTTTGAATATTTTAAATG+AGG + chr1_2:57808605-57808624 None:intergenic 15.0%
!! TTCTTTCTTAAAAGTAATAT+TGG - chr1_2:57809313-57809332 Msa0079790:intron 15.0%
!! TTTGCAATTATAGAAAAATA+AGG + chr1_2:57809945-57809964 None:intergenic 15.0%
!!! TTATTTTTCTATAATTGCAA+AGG - chr1_2:57809944-57809963 Msa0079790:intron 15.0%
!!! ATAATTTTCATTCTAAACAT+GGG - chr1_2:57811128-57811147 Msa0079790:CDS 15.0%
!!! TTTTTTTGTCATTAAAAACA+TGG - chr1_2:57811339-57811358 Msa0079790:CDS 15.0%
!! AATAAAATAAAATAGTTCCT+TGG + chr1_2:57811454-57811473 None:intergenic 15.0%
!! AAAACATAAAATTGAATGTT+AGG - chr1_2:57811606-57811625 Msa0079790:CDS 15.0%
!! AAGATAATAATTAAGTAACA+TGG - chr1_2:57812306-57812325 Msa0079790:CDS 15.0%
!!! GCATTAATTTTAATTTTCAA+AGG + chr1_2:57812461-57812480 None:intergenic 15.0%
!!! ACAATCTCTAAATTTTTAAT+GGG + chr1_2:57814052-57814071 None:intergenic 15.0%
!!! AACAATCTCTAAATTTTTAA+TGG + chr1_2:57814053-57814072 None:intergenic 15.0%
!!! CAAACATTTTGTAATTTTAA+GGG + chr1_2:57815349-57815368 None:intergenic 15.0%
!!! ACAAACATTTTGTAATTTTA+AGG + chr1_2:57815350-57815369 None:intergenic 15.0%
!!! AAGTTTGAAAATATTTTGAG+AGG - chr1_2:57806432-57806451 Msa0079790:intron 20.0%
!!! GTCTAAAATAATAAGAAGTA+TGG + chr1_2:57807621-57807640 None:intergenic 20.0%
!! TAAGTTATTTAAAAAGTTGG+TGG - chr1_2:57807714-57807733 Msa0079790:intron 20.0%
!! AGATAACATCGAAAAAATAT+AGG + chr1_2:57808500-57808519 None:intergenic 20.0%
!! TATAATTGTTCAGTAAACAT+TGG - chr1_2:57808538-57808557 Msa0079790:intron 20.0%
!! TAAAAATCAAAACAACAAAC+TGG + chr1_2:57808759-57808778 None:intergenic 20.0%
!!! CTTTTAAGAAAGAAAATATC+TGG + chr1_2:57809307-57809326 None:intergenic 20.0%
!! TGGAAAATAATCATTCTATA+TGG - chr1_2:57809433-57809452 Msa0079790:intron 20.0%
!! AATTTAAGCTATAAACATGA+AGG + chr1_2:57809769-57809788 None:intergenic 20.0%
!! TTAAATGATGGTATAAAGAA+CGG - chr1_2:57809903-57809922 Msa0079790:CDS 20.0%
!! AGAATAAAAAATGTTAATGC+CGG - chr1_2:57810250-57810269 Msa0079790:intron 20.0%
!! AATTGTGAAAATTATAGTGT+TGG - chr1_2:57810670-57810689 Msa0079790:intron 20.0%
!! ATTGTGAAAATTATAGTGTT+GGG - chr1_2:57810671-57810690 Msa0079790:intron 20.0%
!!! GATAATTTTCATTCTAAACA+TGG - chr1_2:57811127-57811146 Msa0079790:CDS 20.0%
!!! TGTGTTTAGGATTAATTTTT+AGG - chr1_2:57811220-57811239 Msa0079790:CDS 20.0%
!! TAAATCATGTAAAAGTAAGA+TGG + chr1_2:57811494-57811513 None:intergenic 20.0%
!!! TTCTTAAATTTTCATCATGA+GGG + chr1_2:57811888-57811907 None:intergenic 20.0%
!! AATATAACTGCTGAAATTAT+GGG - chr1_2:57812139-57812158 Msa0079790:intron 20.0%
!! AATGAATAAAGACTAGAATA+TGG - chr1_2:57812184-57812203 Msa0079790:CDS 20.0%
!!! TTAGTATTCTTTAACTTTAG+GGG + chr1_2:57812582-57812601 None:intergenic 20.0%
!!! CTTAGTATTCTTTAACTTTA+GGG + chr1_2:57812583-57812602 None:intergenic 20.0%
!!! TTAGTATTCTTTAACTTTAC+GGG + chr1_2:57812709-57812728 None:intergenic 20.0%
!!! CTTAGTATTCTTTAACTTTA+CGG + chr1_2:57812583-57812602 None:intergenic 20.0%
!! AAACCAAACATAAATGATAT+TGG - chr1_2:57812872-57812891 Msa0079790:CDS 20.0%
!! TCACTTCAAAAAATCATAAT+TGG - chr1_2:57813077-57813096 Msa0079790:CDS 20.0%
!!! TTTTTTAAAGAAATGTTAGG+TGG - chr1_2:57813145-57813164 Msa0079790:intron 20.0%
!! TAAAACCTAAAACTTCAATA+TGG + chr1_2:57813361-57813380 None:intergenic 20.0%
!! AGAAAGAGATAAATAATAAG+AGG - chr1_2:57813387-57813406 Msa0079790:intron 20.0%
!! GAAAGAGATAAATAATAAGA+GGG - chr1_2:57813388-57813407 Msa0079790:intron 20.0%
!! TCTCAATAAATAGAAAAATC+AGG - chr1_2:57813491-57813510 Msa0079790:CDS 20.0%
!!! AAGATAGGTGAATTTTAATT+TGG - chr1_2:57813670-57813689 Msa0079790:CDS 20.0%
!! ATCTAAAGGTGAAAAAAAAA+TGG + chr1_2:57813724-57813743 None:intergenic 20.0%
!!! TTTGAAGCTTTTTAAATTCT+TGG - chr1_2:57813982-57814001 Msa0079790:intron 20.0%
!!! GGGTTTTATTTTGAAAAAAT+TGG + chr1_2:57814032-57814051 None:intergenic 20.0%
!! AAAAAAAAAACCCTGAAATT+TGG - chr1_2:57814136-57814155 Msa0079790:intron 20.0%
!!! AATTTCAATTCAAGTTTTAG+TGG - chr1_2:57814927-57814946 Msa0079790:intron 20.0%
! ATTGCTATAAGTCTCATAAT+TGG - chr1_2:57807595-57807614 Msa0079790:intron 25.0%
!! ATTTCCTTTTGCAATATTTC+TGG - chr1_2:57809273-57809292 Msa0079790:intron 25.0%
! ATTTACATGAGATCATCTAT+TGG - chr1_2:57809349-57809368 Msa0079790:intron 25.0%
! CTTAAAAAATCCTTCTTCTA+TGG + chr1_2:57809385-57809404 None:intergenic 25.0%
!!! CATAGAAGAAGGATTTTTTA+AGG - chr1_2:57809383-57809402 Msa0079790:intron 25.0%
! AATATAAAGTTAACCTTCCT+AGG - chr1_2:57809833-57809852 Msa0079790:CDS 25.0%
! TAAATGATGGTATAAAGAAC+GGG - chr1_2:57809904-57809923 Msa0079790:CDS 25.0%
! AGAAAAAGAGGTTTCTATAT+CGG - chr1_2:57810597-57810616 Msa0079790:intron 25.0%
! TGATTCCATAAAACTTAATC+AGG - chr1_2:57810699-57810718 Msa0079790:intron 25.0%
!! ACAATCCTGATTAAGTTTTA+TGG + chr1_2:57810707-57810726 None:intergenic 25.0%
!! CTATTTCCTTCTCAATTTTT+AGG - chr1_2:57810861-57810880 Msa0079790:CDS 25.0%
!! AAATGTGAACTTTTAACCAA+TGG - chr1_2:57810928-57810947 Msa0079790:CDS 25.0%
!! AATGTGAACTTTTAACCAAT+GGG - chr1_2:57810929-57810948 Msa0079790:CDS 25.0%
!! AGTTCTCAAAATTTTTGTAG+TGG - chr1_2:57811171-57811190 Msa0079790:CDS 25.0%
! TTTGTAGTGGTGAATATATT+CGG - chr1_2:57811184-57811203 Msa0079790:CDS 25.0%
!! ATTTCAACTAAAAAGTGCAA+AGG + chr1_2:57811270-57811289 None:intergenic 25.0%
!!! TGCACTTTTTAGTTGAAATA+TGG - chr1_2:57811271-57811290 Msa0079790:CDS 25.0%
! ATGTTATAACTAGGAAATCA+TGG - chr1_2:57811409-57811428 Msa0079790:CDS 25.0%
! TGTTATAACTAGGAAATCAT+GGG - chr1_2:57811410-57811429 Msa0079790:CDS 25.0%
! AAGGAAAAGTGAATCTTTAA+AGG + chr1_2:57811761-57811780 None:intergenic 25.0%
!! TTTTATTGAGCAATAAACAG+AGG + chr1_2:57811787-57811806 None:intergenic 25.0%
! TTGCTCAATAAAATTTAGAC+TGG - chr1_2:57811794-57811813 Msa0079790:CDS 25.0%
! TGCTCAATAAAATTTAGACT+GGG - chr1_2:57811795-57811814 Msa0079790:CDS 25.0%
!!! ATTTTTCAGGAACCATATTT+TGG - chr1_2:57811822-57811841 Msa0079790:CDS 25.0%
! ACCTTGCAAAATTAAATGAA+CGG + chr1_2:57811851-57811870 None:intergenic 25.0%
!! GTTCTTAAATTTTCATCATG+AGG + chr1_2:57811889-57811908 None:intergenic 25.0%
!! GTAGAACATTTTCAATGAAT+TGG + chr1_2:57811926-57811945 None:intergenic 25.0%
! ATAATAAAAGCTTTCACACT+GGG + chr1_2:57812105-57812124 None:intergenic 25.0%
! TATAATAAAAGCTTTCACAC+TGG + chr1_2:57812106-57812125 None:intergenic 25.0%
! CAATATAACTGCTGAAATTA+TGG - chr1_2:57812138-57812157 Msa0079790:intron 25.0%
! ATATAACTGCTGAAATTATG+GGG - chr1_2:57812140-57812159 Msa0079790:intron 25.0%
!! ATATGTTTTCCTATTCAATC+AGG + chr1_2:57812285-57812304 None:intergenic 25.0%
!! GCTTAGTATTCTTTAACTTT+AGG + chr1_2:57812584-57812603 None:intergenic 25.0%
! AACATGTCAAATAACAACTT+GGG - chr1_2:57812970-57812989 Msa0079790:CDS 25.0%
!! AGATACCATATTGAAGTTTT+AGG - chr1_2:57813353-57813372 Msa0079790:intron 25.0%
!!! GATTATAAACTGATTTTACG+AGG - chr1_2:57813583-57813602 Msa0079790:CDS 25.0%
! TATAACTGATATTGCAAGAT+AGG - chr1_2:57813655-57813674 Msa0079790:CDS 25.0%
! TAGTAGGTGATTTAATCTAA+AGG + chr1_2:57813738-57813757 None:intergenic 25.0%
! AACATGAAGAGAAGAATATT+TGG + chr1_2:57813908-57813927 None:intergenic 25.0%
!!! GGATGAAAACTAATTTTTTC+TGG + chr1_2:57813946-57813965 None:intergenic 25.0%
! TCAAACTTGTAGATTTATGA+TGG + chr1_2:57813967-57813986 None:intergenic 25.0%
! TATCAACTCAAATTATTCTC+TGG + chr1_2:57814226-57814245 None:intergenic 25.0%
!! ACAAGTCATTATTTCTTGAT+GGG - chr1_2:57814319-57814338 Msa0079790:intron 25.0%
!! ATTATTTCTTGATGGGATAA+TGG - chr1_2:57814326-57814345 Msa0079790:intron 25.0%
! ACTCAAAAACAACATAAATC+TGG + chr1_2:57814475-57814494 None:intergenic 25.0%
!!! TTTATGTTGTTTTTGAGTTG+TGG - chr1_2:57814477-57814496 Msa0079790:intron 25.0%
! ACGAGAGAAATAAAATGATT+TGG - chr1_2:57814529-57814548 Msa0079790:intron 25.0%
!!! AGAAATAAAATGATTTGGTG+TGG - chr1_2:57814534-57814553 Msa0079790:intron 25.0%
! ATCTAAACCACAGAAAAAAA+TGG - chr1_2:57814589-57814608 Msa0079790:intron 25.0%
! ATATAAGAAACATATCTTGC+AGG + chr1_2:57814658-57814677 None:intergenic 25.0%
! ATTTGAATGTAAGAACAAAG+AGG - chr1_2:57814765-57814784 Msa0079790:intron 25.0%
! AAACTGTTATAACACAAATG+AGG - chr1_2:57814827-57814846 Msa0079790:intron 25.0%
!!! CATGATCAATTTTTTCAAGA+GGG - chr1_2:57815005-57815024 Msa0079790:CDS 25.0%
! GGAATTTAATTAACAAATGC+AGG - chr1_2:57815443-57815462 Msa0079790:five_prime_UTR 25.0%
!! GTTTTCGGTAATTGTCATTT+AGG + chr1_2:57806490-57806509 None:intergenic 30.0%
!!! CTAATCACAAGTCTTGTTTT+CGG + chr1_2:57806505-57806524 None:intergenic 30.0%
!!! TGTGATGATTTTGAGTTTTG+AGG + chr1_2:57806557-57806576 None:intergenic 30.0%
AATTTGACCTTTAACGAAGA+CGG + chr1_2:57806581-57806600 None:intergenic 30.0%
! TCATCTACACGATTTTCTAA+AGG + chr1_2:57806768-57806787 None:intergenic 30.0%
AAACAAGGAAAGAACAACAA+CGG - chr1_2:57806790-57806809 Msa0079790:CDS 30.0%
GAAATGAACTTGAAAGAAGA+AGG + chr1_2:57806838-57806857 None:intergenic 30.0%
TATTGTTGATCAGAAACAAG+TGG + chr1_2:57807255-57807274 None:intergenic 30.0%
!! GATGATGGAATAGTTAAACA+AGG - chr1_2:57807354-57807373 Msa0079790:intron 30.0%
AGTAAAGTAAGCAATCTCTA+AGG - chr1_2:57807396-57807415 Msa0079790:intron 30.0%
TAATATTACTTGCACTTGTG+TGG - chr1_2:57807439-57807458 Msa0079790:intron 30.0%
!! AAAGTTGGTGGATAAATCAA+AGG - chr1_2:57807726-57807745 Msa0079790:intron 30.0%
!! AAGTTGGTGGATAAATCAAA+GGG - chr1_2:57807727-57807746 Msa0079790:intron 30.0%
!! CTCTTAAGAAGCATTGATTA+TGG - chr1_2:57807850-57807869 Msa0079790:intron 30.0%
!!! ACATCTATTTTTTGTCAAGC+AGG - chr1_2:57807989-57808008 Msa0079790:intron 30.0%
TGTGATAAATCAAAGATACC+TGG - chr1_2:57808248-57808267 Msa0079790:intron 30.0%
TGTTCAGTAAACATTGGTAT+TGG - chr1_2:57808544-57808563 Msa0079790:intron 30.0%
TTATTGACGTAACTTATACC+TGG - chr1_2:57808733-57808752 Msa0079790:intron 30.0%
GACTTGTGTTTAACAACAAT+GGG + chr1_2:57808946-57808965 None:intergenic 30.0%
CTGATCAATCTTAGTGATAT+GGG - chr1_2:57809079-57809098 Msa0079790:intron 30.0%
AAATTCTACAGAAACAGATG+CGG - chr1_2:57809201-57809220 Msa0079790:intron 30.0%
TAGATGATAGTTTATGTCAG+TGG - chr1_2:57809406-57809425 Msa0079790:intron 30.0%
! TACTGTTACTAATGTTTTGC+AGG - chr1_2:57809469-57809488 Msa0079790:intron 30.0%
GATGTTATTACCATGAATTG+AGG + chr1_2:57809603-57809622 None:intergenic 30.0%
TTCAAGACATCATTAGATGA+TGG + chr1_2:57809809-57809828 None:intergenic 30.0%
TTGTTGGTCAAACTTCTTTA+TGG - chr1_2:57809864-57809883 Msa0079790:CDS 30.0%
GTCAAACTTCTTTATGGATT+TGG - chr1_2:57809870-57809889 Msa0079790:CDS 30.0%
GGCAAGATATGTTTAAATGA+TGG - chr1_2:57809891-57809910 Msa0079790:CDS 30.0%
CTCAATCATGTATGTTATAC+AGG - chr1_2:57809973-57809992 Msa0079790:intron 30.0%
! TTTTAGTCATTACAGTCAGT+GGG - chr1_2:57810012-57810031 Msa0079790:intron 30.0%
AAAAATATGACAAGTTCCCT+TGG + chr1_2:57810053-57810072 None:intergenic 30.0%
AGTTCTTAAGATACACAATC+AGG - chr1_2:57810099-57810118 Msa0079790:intron 30.0%
TAAAAAATGTTAATGCCGGA+TGG - chr1_2:57810254-57810273 Msa0079790:intron 30.0%
ATGTCTGTAGAAGATATGAT+TGG - chr1_2:57810572-57810591 Msa0079790:intron 30.0%
ATATGATTGGCAAGAAAAAG+AGG - chr1_2:57810585-57810604 Msa0079790:intron 30.0%
GAAAAAGAGGTTTCTATATC+GGG - chr1_2:57810598-57810617 Msa0079790:intron 30.0%
AAAAAGAGGTTTCTATATCG+GGG - chr1_2:57810599-57810618 Msa0079790:intron 30.0%
GAACATAATAATGTCGAGAA+AGG + chr1_2:57810830-57810849 None:intergenic 30.0%
AAGACACCTAAAAATTGAGA+AGG + chr1_2:57810870-57810889 None:intergenic 30.0%
! ATGTGAACTTTTAACCAATG+GGG - chr1_2:57810930-57810949 Msa0079790:CDS 30.0%
CTTATTTCAACCTCATTAAC+AGG + chr1_2:57810976-57810995 None:intergenic 30.0%
! GAATTTTGTGGAAATGATCA+AGG + chr1_2:57811020-57811039 None:intergenic 30.0%
CAAAAACAAAAAGGCAGATA+AGG + chr1_2:57811071-57811090 None:intergenic 30.0%
!!! CTTATCTGCCTTTTTGTTTT+TGG - chr1_2:57811069-57811088 Msa0079790:intron 30.0%
TTAGTATAAAACTTTCCCAG+TGG + chr1_2:57811096-57811115 None:intergenic 30.0%
!!! GATTAATTTTTAGGTGCACA+TGG - chr1_2:57811229-57811248 Msa0079790:CDS 30.0%
AAAAGAAGTCAAGTGTAAAC+TGG + chr1_2:57811301-57811320 None:intergenic 30.0%
AAAGTAAGATGGAAATGCAT+AGG + chr1_2:57811483-57811502 None:intergenic 30.0%
!! TGAATGTTAGGTTGATAACA+CGG - chr1_2:57811618-57811637 Msa0079790:CDS 30.0%
! GTGTGTGTTTCTAATATGAA+TGG - chr1_2:57811710-57811729 Msa0079790:CDS 30.0%
CCTTGCAAAATTAAATGAAC+GGG + chr1_2:57811850-57811869 None:intergenic 30.0%
TGTTCTACAATAATTGTCAG+AGG - chr1_2:57811938-57811957 Msa0079790:intron 30.0%
TTTGTGGGAAAAACATATGT+TGG - chr1_2:57812067-57812086 Msa0079790:intron 30.0%
TTTCCTATTCAATCAGGATT+AGG + chr1_2:57812279-57812298 None:intergenic 30.0%
GAACATGTCAAATAACAACT+TGG - chr1_2:57812969-57812988 Msa0079790:CDS 30.0%
AAAAAAAATGTGCGCAAAAC+CGG - chr1_2:57812995-57813014 Msa0079790:CDS 30.0%
GAATAATATGAGACTTGACA+CGG - chr1_2:57813313-57813332 Msa0079790:intron 30.0%
TAATTTGGACCAGTTTATGT+TGG - chr1_2:57813685-57813704 Msa0079790:CDS 30.0%
GAAAAAAAAATGGTCCAAGT+TGG + chr1_2:57813714-57813733 None:intergenic 30.0%
! GAAATTTTATGGGTCAGATT+TGG + chr1_2:57813784-57813803 None:intergenic 30.0%
! GAGAGAGAGAGAAATTTTAT+GGG + chr1_2:57813794-57813813 None:intergenic 30.0%
! AGAGAGAGAGAGAAATTTTA+TGG + chr1_2:57813795-57813814 None:intergenic 30.0%
TCTTAGAAACTCAAGAACAA+TGG + chr1_2:57814081-57814100 None:intergenic 30.0%
AAAATCATGGGAATAAAGTC+TGG + chr1_2:57814111-57814130 None:intergenic 30.0%
AATATGAGAGGAAGAAGAAA+GGG + chr1_2:57814165-57814184 None:intergenic 30.0%
AAATATGAGAGGAAGAAGAA+AGG + chr1_2:57814166-57814185 None:intergenic 30.0%
CAAAGCAATAGAAATATGAG+AGG + chr1_2:57814177-57814196 None:intergenic 30.0%
TAAAGCATGTGGAAAAACTT+TGG - chr1_2:57814275-57814294 Msa0079790:intron 30.0%
AAAGCATGTGGAAAAACTTT+GGG - chr1_2:57814276-57814295 Msa0079790:intron 30.0%
!!! GGAAAAACTTTGGGATTTTA+AGG - chr1_2:57814285-57814304 Msa0079790:intron 30.0%
! GACAAGTCATTATTTCTTGA+TGG - chr1_2:57814318-57814337 Msa0079790:intron 30.0%
!! TTGATGGGATAATGGAATTA+TGG - chr1_2:57814334-57814353 Msa0079790:intron 30.0%
ATGAGAATGAAGATAAAGGT+GGG - chr1_2:57814396-57814415 Msa0079790:intron 30.0%
!! ATAAAATGATTTGGTGTGGA+TGG - chr1_2:57814538-57814557 Msa0079790:intron 30.0%
GGATGGTACATAAAATGATT+TGG - chr1_2:57814555-57814574 Msa0079790:intron 30.0%
! TGGTACATAAAATGATTTGG+TGG - chr1_2:57814558-57814577 Msa0079790:intron 30.0%
!! GGTACATAAAATGATTTGGT+GGG - chr1_2:57814559-57814578 Msa0079790:intron 30.0%
! AGAGGTAGTTGTAGTTATTT+TGG - chr1_2:57814783-57814802 Msa0079790:intron 30.0%
TTTGTGTTATAACAGTTTCC+AGG + chr1_2:57814825-57814844 None:intergenic 30.0%
TATACCATCAGAGAAATTTG+AGG + chr1_2:57814865-57814884 None:intergenic 30.0%
AAGGTTAAATCATCAGAACA+TGG - chr1_2:57814891-57814910 Msa0079790:intron 30.0%
TGAAAAAATTGATCATGGTC+TGG + chr1_2:57815002-57815021 None:intergenic 30.0%
CCTCTTGAAAAAATTGATCA+TGG + chr1_2:57815007-57815026 None:intergenic 30.0%
!!! CCATGATCAATTTTTTCAAG+AGG - chr1_2:57815004-57815023 Msa0079790:CDS 30.0%
TTACAAAATGTTTGTGTTGC+AGG - chr1_2:57815355-57815374 Msa0079790:five_prime_UTR 30.0%
TTTACAACAATTCGAAGAGA+GGG + chr1_2:57815410-57815429 None:intergenic 30.0%
ATTTACAACAATTCGAAGAG+AGG + chr1_2:57815411-57815430 None:intergenic 30.0%
CTCTTCGAATTGTTGTAAAT+TGG - chr1_2:57815411-57815430 Msa0079790:five_prime_UTR 30.0%
TTCGAATTGTTGTAAATTGG+TGG - chr1_2:57815414-57815433 Msa0079790:five_prime_UTR 30.0%
ACGACATTATCGAAAATGTG+TGG - chr1_2:57806461-57806480 Msa0079790:intron 35.0%
CGACATTATCGAAAATGTGT+GGG - chr1_2:57806462-57806481 Msa0079790:intron 35.0%
GACATTATCGAAAATGTGTG+GGG - chr1_2:57806463-57806482 Msa0079790:intron 35.0%
ATCGTGTAGATGAAGAAACA+AGG - chr1_2:57806775-57806794 Msa0079790:CDS 35.0%
CATTTCGTCTTGCATTAAGA+CGG - chr1_2:57806852-57806871 Msa0079790:CDS 35.0%
!! AGCGAAAACTTGCTAAATCT+AGG - chr1_2:57807071-57807090 Msa0079790:intron 35.0%
CATGAACAACGTTTCTACAA+AGG + chr1_2:57807127-57807146 None:intergenic 35.0%
TCGAGTATGGAAAAGCTATT+TGG - chr1_2:57807465-57807484 Msa0079790:intron 35.0%
AACCAGTCTCACATTAATTC+TGG + chr1_2:57807643-57807662 None:intergenic 35.0%
ACTTACTTAACTCCCTAAAG+AGG + chr1_2:57807699-57807718 None:intergenic 35.0%
AATCAAAGGGTGAGATTAAG+TGG - chr1_2:57807740-57807759 Msa0079790:intron 35.0%
ACGTCATGTAATTGTCAATG+TGG - chr1_2:57807795-57807814 Msa0079790:intron 35.0%
!! GTTATAGAGTACTGCATATG+TGG - chr1_2:57807825-57807844 Msa0079790:intron 35.0%
!!! TTTTGTGCAATAGAGTACTG+TGG - chr1_2:57807930-57807949 Msa0079790:intron 35.0%
GCGAAGTTATTTATGAACTG+AGG - chr1_2:57807952-57807971 Msa0079790:intron 35.0%
ATCGAGAACTTGAAATCCAT+TGG + chr1_2:57808087-57808106 None:intergenic 35.0%
TGCATCTGTAAAAACGAAAC+TGG + chr1_2:57808158-57808177 None:intergenic 35.0%
ACAGTGCAAAATGTCAAAGA+TGG - chr1_2:57808272-57808291 Msa0079790:intron 35.0%
CTGTTAGATTCTACTCACTA+AGG - chr1_2:57808339-57808358 Msa0079790:intron 35.0%
TAGAGCATGAACATAGGTAT+GGG + chr1_2:57808366-57808385 None:intergenic 35.0%
TTAGAGCATGAACATAGGTA+TGG + chr1_2:57808367-57808386 None:intergenic 35.0%
GAATCTTAGAGCATGAACAT+AGG + chr1_2:57808372-57808391 None:intergenic 35.0%
TAACCATGTAGACAGTTGAA+CGG + chr1_2:57808394-57808413 None:intergenic 35.0%
GTTTACCAATTTCCTCCATT+GGG - chr1_2:57808566-57808585 Msa0079790:intron 35.0%
! GCTTAGTGTAACAAGTTTTC+AGG - chr1_2:57808628-57808647 Msa0079790:intron 35.0%
GAACATGTAAGTGATCCATT+TGG + chr1_2:57808673-57808692 None:intergenic 35.0%
AACTAAGACACTGTTCGTTA+TGG + chr1_2:57808711-57808730 None:intergenic 35.0%
!! GTTTAACAACAATGGGTTGT+TGG + chr1_2:57808939-57808958 None:intergenic 35.0%
CGACTTGTGTTTAACAACAA+TGG + chr1_2:57808947-57808966 None:intergenic 35.0%
TGCTAGATTCCATAGCATAT+CGG + chr1_2:57809042-57809061 None:intergenic 35.0%
TATGGAATCTAGCAAGCATT+TGG - chr1_2:57809048-57809067 Msa0079790:intron 35.0%
GCTGATCAATCTTAGTGATA+TGG - chr1_2:57809078-57809097 Msa0079790:intron 35.0%
TATCAAGATCTAATGCCTGA+TGG - chr1_2:57809124-57809143 Msa0079790:intron 35.0%
CTGTCCAGAAATATTGCAAA+AGG + chr1_2:57809280-57809299 None:intergenic 35.0%
!!! CAAGGATTTTGTTTCTAGAG+CGG - chr1_2:57809499-57809518 Msa0079790:intron 35.0%
TCAAAACATAGCGCAGATAT+AGG + chr1_2:57809554-57809573 None:intergenic 35.0%
TTCCTACTCAAAGAAAGGAT+CGG - chr1_2:57809643-57809662 Msa0079790:intron 35.0%
TGCTATTCTCCGTTTCTTTA+AGG - chr1_2:57809743-57809762 Msa0079790:intron 35.0%
ACATGAAGGCCTTAAAGAAA+CGG + chr1_2:57809755-57809774 None:intergenic 35.0%
!! GTTTTAGTCATTACAGTCAG+TGG - chr1_2:57810011-57810030 Msa0079790:intron 35.0%
! ATTTTTGTCCTTTCCCCTTT+TGG - chr1_2:57810067-57810086 Msa0079790:intron 35.0%
!! TGCTGGTTTACAGTAAAATG+TGG + chr1_2:57810178-57810197 None:intergenic 35.0%
TACTGAATTAAGTGACCAGA+AGG + chr1_2:57810433-57810452 None:intergenic 35.0%
TAACCTACTATCGTCATTGA+TGG - chr1_2:57810453-57810472 Msa0079790:intron 35.0%
GTTCTTGAAGCAGTTTCATT+TGG + chr1_2:57810484-57810503 None:intergenic 35.0%
TCTTCTTCTTGTATCTGTGA+AGG + chr1_2:57810517-57810536 None:intergenic 35.0%
AGAAGATTTACGAGTGAAAG+TGG - chr1_2:57810531-57810550 Msa0079790:intron 35.0%
GGAAACTGCTGAAATGATAT+TGG - chr1_2:57810639-57810658 Msa0079790:intron 35.0%
TTAGGTGTCTTTCTTTGTGA+TGG - chr1_2:57810879-57810898 Msa0079790:CDS 35.0%
TAGGTGTCTTTCTTTGTGAT+GGG - chr1_2:57810880-57810899 Msa0079790:CDS 35.0%
AGAGGATATTCCTGTTAATG+AGG - chr1_2:57810963-57810982 Msa0079790:CDS 35.0%
TGAGGTTGAAATAAGACAGA+AGG - chr1_2:57810981-57811000 Msa0079790:CDS 35.0%
TTTGTGGAAATGATCAAGGA+CGG + chr1_2:57811016-57811035 None:intergenic 35.0%
!!! CTTTTTGTTTTTGGTCCACT+GGG - chr1_2:57811078-57811097 Msa0079790:intron 35.0%
AATCCTAAACACATACGAAG+AGG + chr1_2:57811213-57811232 None:intergenic 35.0%
! ACTTGACTTCTTTTGTTGCT+AGG - chr1_2:57811307-57811326 Msa0079790:CDS 35.0%
GATCTTCTTTATGCTCTACA+TGG - chr1_2:57811361-57811380 Msa0079790:CDS 35.0%
! ATGGGAGTTTTACGTTGTTA+CGG - chr1_2:57811428-57811447 Msa0079790:CDS 35.0%
TTCCACGAATACTAAATCCA+CGG + chr1_2:57811668-57811687 None:intergenic 35.0%
GAATGGTTTCTTAGTGTTAG+TGG - chr1_2:57811727-57811746 Msa0079790:CDS 35.0%
AATGAACGGGAACCAAAATA+TGG + chr1_2:57811837-57811856 None:intergenic 35.0%
!! CCCGTTCATTTAATTTTGCA+AGG - chr1_2:57811847-57811866 Msa0079790:CDS 35.0%
!!! ATGGGGTTTTAGATAATGAG+AGG - chr1_2:57812157-57812176 Msa0079790:intron 35.0%
TAGCACTTACCCCTATTTAT+AGG - chr1_2:57812238-57812257 Msa0079790:CDS 35.0%
AGCACTTACCCCTATTTATA+GGG - chr1_2:57812239-57812258 Msa0079790:CDS 35.0%
TTACCCCTATTTATAGGGAT+GGG - chr1_2:57812244-57812263 Msa0079790:CDS 35.0%
AGTACCCATCCCTATAAATA+GGG + chr1_2:57812251-57812270 None:intergenic 35.0%
ACTCCTAATCCTGATTGAAT+AGG - chr1_2:57812273-57812292 Msa0079790:CDS 35.0%
ATTATCTTGCACTTGCAGTT+TGG + chr1_2:57812519-57812538 None:intergenic 35.0%
! GTTCATGAAACTTGTGGTTT+TGG + chr1_2:57812778-57812797 None:intergenic 35.0%
!! ATGTAAGTGCTGGCTTAATA+TGG + chr1_2:57812823-57812842 None:intergenic 35.0%
CGGCCAATATCATTTATGTT+TGG + chr1_2:57812878-57812897 None:intergenic 35.0%
!! TTGTTTCTGCTTGTTTAGTC+CGG + chr1_2:57813017-57813036 None:intergenic 35.0%
AAACAAGCAGAAACAACGAT+AGG - chr1_2:57813021-57813040 Msa0079790:CDS 35.0%
AACAAGCAGAAACAACGATA+GGG - chr1_2:57813022-57813041 Msa0079790:CDS 35.0%
AAATCATAATTGGCAGCTTC+TGG - chr1_2:57813087-57813106 Msa0079790:CDS 35.0%
TGTTTGACAAAAATGAGCAG+AGG - chr1_2:57813242-57813261 Msa0079790:intron 35.0%
AAGTACAATCCCAAACTTTC+AGG - chr1_2:57813278-57813297 Msa0079790:intron 35.0%
GGTGCATAACAAGATTTAGT+AGG + chr1_2:57813754-57813773 None:intergenic 35.0%
GAAAGGGATTCCAAATTTCA+GGG + chr1_2:57814149-57814168 None:intergenic 35.0%
AGAAAGGGATTCCAAATTTC+AGG + chr1_2:57814150-57814169 None:intergenic 35.0%
TTGTGTTTATCAATGTGTGC+AGG + chr1_2:57814203-57814222 None:intergenic 35.0%
GATAAGATTTGACTGACATG+AGG - chr1_2:57814242-57814261 Msa0079790:intron 35.0%
GATTCAAGGTATAAAGCATG+TGG - chr1_2:57814264-57814283 Msa0079790:intron 35.0%
AATGGAATTATGGAAAGCCA+AGG - chr1_2:57814344-57814363 Msa0079790:intron 35.0%
GTCGATGAGAATGAAGATAA+AGG - chr1_2:57814392-57814411 Msa0079790:intron 35.0%
GATGAGAATGAAGATAAAGG+TGG - chr1_2:57814395-57814414 Msa0079790:intron 35.0%
! AATGAAGATAAAGGTGGGTT+GGG - chr1_2:57814401-57814420 Msa0079790:intron 35.0%
!!! ATGTTGTTTTTGAGTTGTGG+TGG - chr1_2:57814480-57814499 Msa0079790:intron 35.0%
!!! GCTTAGACCATTTTTTTCTG+TGG + chr1_2:57814599-57814618 None:intergenic 35.0%
CTAAGCTGAACCAATCTAAT+TGG - chr1_2:57814613-57814632 Msa0079790:intron 35.0%
TAAGAAACATATCTTGCAGG+TGG + chr1_2:57814655-57814674 None:intergenic 35.0%
ACAGTTTCCAGGATAAAAAC+AGG + chr1_2:57814814-57814833 None:intergenic 35.0%
AACACAAATGAGGTTTCAGT+AGG - chr1_2:57814837-57814856 Msa0079790:intron 35.0%
! GAATATGCATGTTACTTGTG+AGG - chr1_2:57814959-57814978 Msa0079790:CDS 35.0%
! TGATATATTTGACTTCTCCG+AGG - chr1_2:57815148-57815167 Msa0079790:five_prime_UTR 35.0%
TTACAACAATTCGAAGAGAG+GGG + chr1_2:57815409-57815428 None:intergenic 35.0%
!! GTTGTAAATTGGTGGTGTAA+AGG - chr1_2:57815422-57815441 Msa0079790:five_prime_UTR 35.0%
ATCACAACCGTCTTCGTTAA+AGG - chr1_2:57806571-57806590 Msa0079790:intron 40.0%
!! TTCGGTTATTTGAGTTGTGG+TGG + chr1_2:57806612-57806631 None:intergenic 40.0%
!! GTGTTCGGTTATTTGAGTTG+TGG + chr1_2:57806615-57806634 None:intergenic 40.0%
CGATAAAAAACGACGGTGTT+CGG + chr1_2:57806630-57806649 None:intergenic 40.0%
TGCATAAGAGTTGAAGACGA+CGG + chr1_2:57806672-57806691 None:intergenic 40.0%
TGCTACCTGATCTTTACGAT+CGG + chr1_2:57806938-57806957 None:intergenic 40.0%
GACATCGCATTAATTCTGGT+CGG + chr1_2:57807331-57807350 None:intergenic 40.0%
GACCAGAATTAATGCGATGT+CGG - chr1_2:57807330-57807349 Msa0079790:intron 40.0%
TTTACTCTCTCAAGAGGAGT+TGG + chr1_2:57807382-57807401 None:intergenic 40.0%
GCTTACTTTACTCTCTCAAG+AGG + chr1_2:57807388-57807407 None:intergenic 40.0%
! TTCGTGTTTTCCGACAAAAG+CGG - chr1_2:57807560-57807579 Msa0079790:intron 40.0%
!! TATACGAGTACCGCTTTTGT+CGG + chr1_2:57807573-57807592 None:intergenic 40.0%
GACCAGAATTAATGTGAGAC+TGG - chr1_2:57807638-57807657 Msa0079790:intron 40.0%
!! GAGACTGGTTTGTTTGATGA+TGG - chr1_2:57807653-57807672 Msa0079790:intron 40.0%
AGACAATCCAACTCCTCTTT+AGG - chr1_2:57807683-57807702 Msa0079790:intron 40.0%
GACAATCCAACTCCTCTTTA+GGG - chr1_2:57807684-57807703 Msa0079790:intron 40.0%
TTAACTCCCTAAAGAGGAGT+TGG + chr1_2:57807693-57807712 None:intergenic 40.0%
TAAGTGGAATTGCATGACAG+TGG - chr1_2:57807756-57807775 Msa0079790:intron 40.0%
! TTTTTGTCAAGCAGGTGCTT+TGG - chr1_2:57807997-57808016 Msa0079790:intron 40.0%
! TTTTGTCAAGCAGGTGCTTT+GGG - chr1_2:57807998-57808017 Msa0079790:intron 40.0%
TTCAAACGTGTACTCCTACT+CGG - chr1_2:57808056-57808075 Msa0079790:intron 40.0%
ATCCATTGGAATAACCGAGT+AGG + chr1_2:57808073-57808092 None:intergenic 40.0%
!! TGGATTTCAAGTTCTCGATG+TGG - chr1_2:57808088-57808107 Msa0079790:intron 40.0%
TGGAAGATGCCTCTAATATC+AGG - chr1_2:57808108-57808127 Msa0079790:intron 40.0%
GGAAGATGCCTCTAATATCA+GGG - chr1_2:57808109-57808128 Msa0079790:intron 40.0%
GACAAGTTCCCTGATATTAG+AGG + chr1_2:57808120-57808139 None:intergenic 40.0%
AGCATCACATCCTTTACTCT+TGG - chr1_2:57808217-57808236 Msa0079790:intron 40.0%
CATGCAACAACCAAGAGTAA+AGG + chr1_2:57808230-57808249 None:intergenic 40.0%
! TTGACATTTTGCACTGTACC+AGG + chr1_2:57808269-57808288 None:intergenic 40.0%
ATTCCGTTCAACTGTCTACA+TGG - chr1_2:57808388-57808407 Msa0079790:intron 40.0%
GGTTTACCAATTTCCTCCAT+TGG - chr1_2:57808565-57808584 Msa0079790:intron 40.0%
TGATACTTCATGAGGCCAAA+TGG - chr1_2:57808655-57808674 Msa0079790:intron 40.0%
ATCAAAACAACAAACTGGCC+AGG + chr1_2:57808754-57808773 None:intergenic 40.0%
GGAATGGTTGGGGTTAATAT+TGG - chr1_2:57808869-57808888 Msa0079790:intron 40.0%
! GTTGGGGTTAATATTGGCTA+TGG - chr1_2:57808875-57808894 Msa0079790:intron 40.0%
! TAATATTGGCTATGGTCCGA+TGG - chr1_2:57808883-57808902 Msa0079790:intron 40.0%
!! TAACAACAATGGGTTGTTGG+AGG + chr1_2:57808936-57808955 None:intergenic 40.0%
GCTAGATTCCATAGCATATC+GGG + chr1_2:57809041-57809060 None:intergenic 40.0%
CTAACTTTCCAGCCTGAATT+CGG + chr1_2:57809169-57809188 None:intergenic 40.0%
TTCAGCTTAGCCATAGAAGA+AGG - chr1_2:57809372-57809391 Msa0079790:intron 40.0%
TAGTTTATGTCAGTGGCAAC+TGG - chr1_2:57809413-57809432 Msa0079790:intron 40.0%
! TGTTTTGCAGGTTGTTGTCA+AGG - chr1_2:57809481-57809500 Msa0079790:intron 40.0%
!!! TTTTGTTTCTAGAGCGGTTG+TGG - chr1_2:57809505-57809524 Msa0079790:intron 40.0%
! CGCAGATATAGGACTAGTAT+GGG + chr1_2:57809543-57809562 None:intergenic 40.0%
CTAGTTACAGCCTCAATTCA+TGG - chr1_2:57809590-57809609 Msa0079790:intron 40.0%
ATGCCTTCCTACTCAAAGAA+AGG - chr1_2:57809638-57809657 Msa0079790:intron 40.0%
GATCCTTTCTTTGAGTAGGA+AGG + chr1_2:57809644-57809663 None:intergenic 40.0%
TCCTACTCAAAGAAAGGATC+GGG - chr1_2:57809644-57809663 Msa0079790:intron 40.0%
AAGTTAACCTTCCTAGGTAG+TGG - chr1_2:57809839-57809858 Msa0079790:CDS 40.0%
AACAAAACCACTACCTAGGA+AGG + chr1_2:57809849-57809868 None:intergenic 40.0%
!!! TTCCTAGGTAGTGGTTTTGT+TGG - chr1_2:57809848-57809867 Msa0079790:CDS 40.0%
AATATGACAAGTTCCCTTGG+AGG + chr1_2:57810050-57810069 None:intergenic 40.0%
ATACACAATCAGGACACAGA+AGG - chr1_2:57810109-57810128 Msa0079790:intron 40.0%
AGAAAGAAAAGCAGGAGGTT+GGG + chr1_2:57810221-57810240 None:intergenic 40.0%
CTAACCACAGAAAGAAAAGC+AGG + chr1_2:57810229-57810248 None:intergenic 40.0%
TAATGCCGGATGGCTTAATA+CGG - chr1_2:57810264-57810283 Msa0079790:intron 40.0%
ACTAACCGTATTAAGCCATC+CGG + chr1_2:57810272-57810291 None:intergenic 40.0%
AATGTTTCATCTTCTGCAGC+AGG - chr1_2:57810292-57810311 Msa0079790:intron 40.0%
ATGTTTCATCTTCTGCAGCA+GGG - chr1_2:57810293-57810312 Msa0079790:intron 40.0%
ATACGCAAAAGTTCATGCCA+TGG - chr1_2:57810387-57810406 Msa0079790:intron 40.0%
ATAAACCAGCAAGTGTTCCA+TGG + chr1_2:57810407-57810426 None:intergenic 40.0%
!! TTGCTGGTTTATACTCCTTC+TGG - chr1_2:57810415-57810434 Msa0079790:intron 40.0%
TGAAAGTGGAACCTGTTCAA+TGG - chr1_2:57810545-57810564 Msa0079790:intron 40.0%
ACCAATTTGGCAGAAATCTG+AGG - chr1_2:57810768-57810787 Msa0079790:intron 40.0%
ACCTCAGATTTCTGCCAAAT+TGG + chr1_2:57810772-57810791 None:intergenic 40.0%
CTCTATTTCAATCTCCCCAT+TGG + chr1_2:57810947-57810966 None:intergenic 40.0%
CAATGGGGAGATTGAAATAG+AGG - chr1_2:57810945-57810964 Msa0079790:CDS 40.0%
TTGTGGAAATGATCAAGGAC+GGG + chr1_2:57811015-57811034 None:intergenic 40.0%
TCCACAAAATTCAGTCCACT+TGG - chr1_2:57811028-57811047 Msa0079790:intron 40.0%
CCACAAAATTCAGTCCACTT+GGG - chr1_2:57811029-57811048 Msa0079790:intron 40.0%
CACAAAATTCAGTCCACTTG+GGG - chr1_2:57811030-57811049 Msa0079790:intron 40.0%
CCAGTGGACCAAAAACAAAA+AGG + chr1_2:57811080-57811099 None:intergenic 40.0%
!!! CCTTTTTGTTTTTGGTCCAC+TGG - chr1_2:57811077-57811096 Msa0079790:intron 40.0%
ACACCTCTTCGTATGTGTTT+AGG - chr1_2:57811207-57811226 Msa0079790:CDS 40.0%
TGCAAAGGATGTAGAACGTA+AGG + chr1_2:57811255-57811274 None:intergenic 40.0%
TTCGTGAATCTGCATTTCGT+AGG + chr1_2:57811536-57811555 None:intergenic 40.0%
!! ATGTTAGGTTGATAACACGG+TGG - chr1_2:57811621-57811640 Msa0079790:CDS 40.0%
TTCCGTGGATTTAGTATTCG+TGG - chr1_2:57811663-57811682 Msa0079790:CDS 40.0%
GAGCAATAAACAGAGGAACA+AGG + chr1_2:57811780-57811799 None:intergenic 40.0%
! TAGACTGGGTGTGATTTTTC+AGG - chr1_2:57811809-57811828 Msa0079790:CDS 40.0%
!! AATTGTCAGAGGCATTGTTC+TGG - chr1_2:57811949-57811968 Msa0079790:intron 40.0%
!! ATTGTCAGAGGCATTGTTCT+GGG - chr1_2:57811950-57811969 Msa0079790:intron 40.0%
AGGTACAGTTAACTTCGGAT+GGG + chr1_2:57812044-57812063 None:intergenic 40.0%
AAGCCAGGTACAGTTAACTT+CGG + chr1_2:57812049-57812068 None:intergenic 40.0%
!! TTAACTGTACCTGGCTTTGT+GGG - chr1_2:57812052-57812071 Msa0079790:intron 40.0%
! TATGTTTTTCCCACAAAGCC+AGG + chr1_2:57812064-57812083 None:intergenic 40.0%
CTTACCCCTATTTATAGGGA+TGG - chr1_2:57812243-57812262 Msa0079790:CDS 40.0%
GTACCCATCCCTATAAATAG+GGG + chr1_2:57812250-57812269 None:intergenic 40.0%
CAGTACCCATCCCTATAAAT+AGG + chr1_2:57812252-57812271 None:intergenic 40.0%
CTATTTATAGGGATGGGTAC+TGG - chr1_2:57812250-57812269 Msa0079790:CDS 40.0%
CATGAGAGTTATTGCAGTTC+AGG + chr1_2:57812483-57812502 None:intergenic 40.0%
CCTGTTGTTCATGAAACTTG+TGG + chr1_2:57812784-57812803 None:intergenic 40.0%
CCACAAGTTTCATGAACAAC+AGG - chr1_2:57812781-57812800 Msa0079790:CDS 40.0%
! GTTTGAAATCGTTTCCAGCT+AGG + chr1_2:57812856-57812875 None:intergenic 40.0%
ACAAGCAGAAACAACGATAG+GGG - chr1_2:57813023-57813042 Msa0079790:CDS 40.0%
AACGATAGGGGTAGAAGAAT+AGG - chr1_2:57813035-57813054 Msa0079790:CDS 40.0%
AAATGTTAGGTGGCAGCATA+CGG - chr1_2:57813155-57813174 Msa0079790:intron 40.0%
TGTCGAGTTCCTGAAAGTTT+GGG + chr1_2:57813290-57813309 None:intergenic 40.0%
TAATATGAGACTTGACACGG+AGG - chr1_2:57813316-57813335 Msa0079790:intron 40.0%
AGTTGGAGACCAACATAAAC+TGG + chr1_2:57813697-57813716 None:intergenic 40.0%
! GTTTATGTTGGTCTCCAACT+TGG - chr1_2:57813697-57813716 Msa0079790:CDS 40.0%
!! TTTATGGGTCAGATTTGGTG+TGG + chr1_2:57813779-57813798 None:intergenic 40.0%
TTGACTGACATGAGGATTCA+AGG - chr1_2:57814250-57814269 Msa0079790:intron 40.0%
ATTATGGAAAGCCAAGGTCA+AGG - chr1_2:57814350-57814369 Msa0079790:intron 40.0%
GAATGAAGATAAAGGTGGGT+TGG - chr1_2:57814400-57814419 Msa0079790:intron 40.0%
!!! TGTTTTTGAGTTGTGGTGGT+TGG - chr1_2:57814484-57814503 Msa0079790:intron 40.0%
AGCTGAACCAATCTAATTGG+TGG - chr1_2:57814616-57814635 Msa0079790:intron 40.0%
!!! GGAATCACCTGTTTTTATCC+TGG - chr1_2:57814804-57814823 Msa0079790:intron 40.0%
CTCTGATGGTATAGCTACAA+AGG - chr1_2:57814872-57814891 Msa0079790:intron 40.0%
AGCAGAAGTTACTACTGATG+TGG - chr1_2:57815061-57815080 Msa0079790:CDS 40.0%
AGGGAGAAATCTGATGAAGA+TGG - chr1_2:57815104-57815123 Msa0079790:CDS 40.0%
! GGTGATAATGATGACATGCT+TGG - chr1_2:57815125-57815144 Msa0079790:exon 40.0%
! ATATTTGACTTCTCCGAGGA+AGG - chr1_2:57815152-57815171 Msa0079790:five_prime_UTR 40.0%
TTTCAGATTCGTACCTTCCT+CGG + chr1_2:57815168-57815187 None:intergenic 40.0%
ACCAAAGCATAGCAGAATCG+CGG - chr1_2:57806526-57806545 Msa0079790:intron 45.0%
!! GATTTTCTAAAGGCCACCAC+CGG + chr1_2:57806758-57806777 None:intergenic 45.0%
AACAACGGTTCCAAGAGCAA+TGG - chr1_2:57806805-57806824 Msa0079790:CDS 45.0%
AGGAACGAATCCATTGCTCT+TGG + chr1_2:57806818-57806837 None:intergenic 45.0%
TGGAACCGATCGTAAAGATC+AGG - chr1_2:57806930-57806949 Msa0079790:CDS 45.0%
CACCGACATCGCATTAATTC+TGG + chr1_2:57807335-57807354 None:intergenic 45.0%
TAATGCGATGTCGGTGATGA+TGG - chr1_2:57807339-57807358 Msa0079790:intron 45.0%
ACTTGTGTGGCAATCGAGTA+TGG - chr1_2:57807452-57807471 Msa0079790:intron 45.0%
GAATGATGCGTGAAGACAGT+TGG - chr1_2:57807507-57807526 Msa0079790:intron 45.0%
TTGTCGGAAAACACGAAGGT+GGG + chr1_2:57807557-57807576 None:intergenic 45.0%
TTTGTCGGAAAACACGAAGG+TGG + chr1_2:57807558-57807577 None:intergenic 45.0%
! GCTTTTGTCGGAAAACACGA+AGG + chr1_2:57807561-57807580 None:intergenic 45.0%
CTCCTACTCGGTTATTCCAA+TGG - chr1_2:57808068-57808087 Msa0079790:intron 45.0%
AGTCCTCAAATAGTCGCTGT+GGG - chr1_2:57808419-57808438 Msa0079790:intron 45.0%
AGCTACCCAATGGAGGAAAT+TGG + chr1_2:57808574-57808593 None:intergenic 45.0%
CAGGACACTGATACTTCATG+AGG - chr1_2:57808647-57808666 Msa0079790:intron 45.0%
ACTTATCCTGTGCCTCAGTT+GGG - chr1_2:57808839-57808858 Msa0079790:intron 45.0%
! TCTAGCAAGCATTTGGCTTC+TGG - chr1_2:57809055-57809074 Msa0079790:intron 45.0%
! CTAGCAAGCATTTGGCTTCT+GGG - chr1_2:57809056-57809075 Msa0079790:intron 45.0%
! AGCCTGAATTCGGTGATACA+GGG + chr1_2:57809159-57809178 None:intergenic 45.0%
AGCGGTTGTGGCACAATTTA+GGG - chr1_2:57809517-57809536 Msa0079790:intron 45.0%
! GCGCAGATATAGGACTAGTA+TGG + chr1_2:57809544-57809563 None:intergenic 45.0%
!!! GCGCTATGTTTTGATCAGAG+TGG - chr1_2:57809560-57809579 Msa0079790:intron 45.0%
ACCCGATCCTTTCTTTGAGT+AGG + chr1_2:57809648-57809667 None:intergenic 45.0%
CGGGTTCTCAAAGCAATGAT+TGG - chr1_2:57809663-57809682 Msa0079790:intron 45.0%
GACCAACAAAACCACTACCT+AGG + chr1_2:57809853-57809872 None:intergenic 45.0%
AGTTCCCTTGGAGGAAATGA+CGG + chr1_2:57810041-57810060 None:intergenic 45.0%
! TTTGTCCTTTCCCCTTTTGG+TGG - chr1_2:57810070-57810089 Msa0079790:intron 45.0%
AACTGTCTCACCACCAAAAG+GGG + chr1_2:57810083-57810102 None:intergenic 45.0%
GAACTGTCTCACCACCAAAA+GGG + chr1_2:57810084-57810103 None:intergenic 45.0%
AGAACTGTCTCACCACCAAA+AGG + chr1_2:57810085-57810104 None:intergenic 45.0%
! AGAAGGACCTGTTCTTTTGC+CGG - chr1_2:57810126-57810145 Msa0079790:intron 45.0%
GGAAAAACCGGCAAAAGAAC+AGG + chr1_2:57810136-57810155 None:intergenic 45.0%
CACCATGGTAGAGGAAAAAC+CGG + chr1_2:57810148-57810167 None:intergenic 45.0%
AAATGTGGAGTGAACCACCA+TGG + chr1_2:57810163-57810182 None:intergenic 45.0%
GAAAGAAAAGCAGGAGGTTG+GGG + chr1_2:57810220-57810239 None:intergenic 45.0%
CAGAAAGAAAAGCAGGAGGT+TGG + chr1_2:57810222-57810241 None:intergenic 45.0%
!! ACCTCCTGCTTTTCTTTCTG+TGG - chr1_2:57810222-57810241 Msa0079790:intron 45.0%
ACCACAGAAAGAAAAGCAGG+AGG + chr1_2:57810226-57810245 None:intergenic 45.0%
TATGCATTGTGCGAATCAGG+AGG + chr1_2:57810370-57810389 None:intergenic 45.0%
CTGCCATCAATGACGATAGT+AGG + chr1_2:57810459-57810478 None:intergenic 45.0%
AAGTGGAACCTGTTCAATGG+TGG - chr1_2:57810548-57810567 Msa0079790:intron 45.0%
AGTGGAACCTGTTCAATGGT+GGG - chr1_2:57810549-57810568 Msa0079790:intron 45.0%
TTGTCACGTCTCAAATGCAG+AGG - chr1_2:57810723-57810742 Msa0079790:intron 45.0%
! GCAGAGGTGCATATAAACTC+CGG - chr1_2:57810739-57810758 Msa0079790:intron 45.0%
! CAGAGGTGCATATAAACTCC+GGG - chr1_2:57810740-57810759 Msa0079790:intron 45.0%
!!! CCCAAGTGGACTGAATTTTG+TGG + chr1_2:57811032-57811051 None:intergenic 45.0%
! GTTTTACGTTGTTACGGCCA+AGG - chr1_2:57811434-57811453 Msa0079790:CDS 45.0%
AACTGCATTGCACTGTATCG+TGG + chr1_2:57811561-57811580 None:intergenic 45.0%
!!! AGCGCTTTTCTTGTTTTCCG+TGG - chr1_2:57811648-57811667 Msa0079790:CDS 45.0%
CAGGTACAGTTAACTTCGGA+TGG + chr1_2:57812045-57812064 None:intergenic 45.0%
CATCCGAAGTTAACTGTACC+TGG - chr1_2:57812043-57812062 Msa0079790:intron 45.0%
!! GTTAACTGTACCTGGCTTTG+TGG - chr1_2:57812051-57812070 Msa0079790:intron 45.0%
ATCGTTTCCAGCTAGGTCTT+TGG + chr1_2:57812849-57812868 None:intergenic 45.0%
GATAGGGGTAGAAGAATAGG+AGG - chr1_2:57813038-57813057 Msa0079790:CDS 45.0%
GACAAAAATGAGCAGAGGTC+TGG - chr1_2:57813247-57813266 Msa0079790:intron 45.0%
CTGTCGAGTTCCTGAAAGTT+TGG + chr1_2:57813291-57813310 None:intergenic 45.0%
TTCAATATGGTATCTGCGCC+AGG + chr1_2:57813348-57813367 None:intergenic 45.0%
!!! AAAGGTGGGTTGGGTGATTT+TGG - chr1_2:57814410-57814429 Msa0079790:intron 45.0%
GCTTGCACCACCAATTAGAT+TGG + chr1_2:57814626-57814645 None:intergenic 45.0%
GGTGCCTCAAATTTCTCTGA+TGG - chr1_2:57814858-57814877 Msa0079790:intron 45.0%
TTTGTGTGCGTGCATGTATG+TGG - chr1_2:57815234-57815253 Msa0079790:five_prime_UTR 45.0%
TTGTGTGCGTGCATGTATGT+GGG - chr1_2:57815235-57815254 Msa0079790:five_prime_UTR 45.0%
!!! TTAATTTTTTTGAATTTTTT+CGG - chr1_2:57806959-57806978 Msa0079790:CDS 5.0%
!!! TTGAATTAAATATTTAATTT+AGG - chr1_2:57807192-57807211 Msa0079790:intron 5.0%
!!! TTTTTTTATAAAAAAATCAT+GGG + chr1_2:57814123-57814142 None:intergenic 5.0%
!!! TTTTTTTTATAAAAAAATCA+TGG + chr1_2:57814124-57814143 None:intergenic 5.0%
ACGGCGGCGATAAAAAACGA+CGG + chr1_2:57806637-57806656 None:intergenic 50.0%
!!! TTTTTTATCGCCGCCGTGCA+CGG - chr1_2:57806640-57806659 Msa0079790:intron 50.0%
AGAGTTGAAGACGACGGAGT+TGG + chr1_2:57806666-57806685 None:intergenic 50.0%
TGCATTAAGACGGCTTCCTC+CGG - chr1_2:57806862-57806881 Msa0079790:CDS 50.0%
! TTTACGATCGGTTCCATCGC+CGG + chr1_2:57806926-57806945 None:intergenic 50.0%
CTGACCTCAAACTGTAGCAG+CGG - chr1_2:57807899-57807918 Msa0079790:intron 50.0%
AAGTCCGCTGCTACAGTTTG+AGG + chr1_2:57807906-57807925 None:intergenic 50.0%
! TGCTTTGGGCTTGCTTTGAC+AGG - chr1_2:57808012-57808031 Msa0079790:intron 50.0%
TGCTTTGACAGGCTAGAGCT+CGG - chr1_2:57808023-57808042 Msa0079790:intron 50.0%
TTTCAGCCTGAGCTTCGTTG+TGG + chr1_2:57808298-57808317 None:intergenic 50.0%
CAGTCCTCAAATAGTCGCTG+TGG - chr1_2:57808418-57808437 Msa0079790:intron 50.0%
AGACCCACAGCGACTATTTG+AGG + chr1_2:57808425-57808444 None:intergenic 50.0%
CACTTATCCTGTGCCTCAGT+TGG - chr1_2:57808838-57808857 Msa0079790:intron 50.0%
!! CGCTGCTTGGTGATGTTGAT+GGG + chr1_2:57809006-57809025 None:intergenic 50.0%
CCATCAACATCACCAAGCAG+CGG - chr1_2:57809004-57809023 Msa0079790:intron 50.0%
! ATTCGGTGATACAGGGGAAC+TGG + chr1_2:57809152-57809171 None:intergenic 50.0%
TCCCCTGTATCACCGAATTC+AGG - chr1_2:57809154-57809173 Msa0079790:intron 50.0%
! GCCTGAATTCGGTGATACAG+GGG + chr1_2:57809158-57809177 None:intergenic 50.0%
! CAGCCTGAATTCGGTGATAC+AGG + chr1_2:57809160-57809179 None:intergenic 50.0%
CTGTATCACCGAATTCAGGC+TGG - chr1_2:57809158-57809177 Msa0079790:intron 50.0%
TCTACAGAAACAGATGCGGC+TGG - chr1_2:57809205-57809224 Msa0079790:intron 50.0%
GAGCGGTTGTGGCACAATTT+AGG - chr1_2:57809516-57809535 Msa0079790:intron 50.0%
ATACTGCGGATGTCATGCCA+CGG + chr1_2:57809721-57809740 None:intergenic 50.0%
CGGAGAATAGCAGCATACTG+CGG + chr1_2:57809735-57809754 None:intergenic 50.0%
GTTGCCGTCATTTCCTCCAA+GGG - chr1_2:57810034-57810053 Msa0079790:intron 50.0%
TCTCACCACCAAAAGGGGAA+AGG + chr1_2:57810078-57810097 None:intergenic 50.0%
!!! TGCCGGTTTTTCCTCTACCA+TGG - chr1_2:57810143-57810162 Msa0079790:intron 50.0%
! CGGTTTTTCCTCTACCATGG+TGG - chr1_2:57810146-57810165 Msa0079790:intron 50.0%
GGGAAAGTCTCAGTTCCATC+TGG - chr1_2:57810313-57810332 Msa0079790:intron 50.0%
ACAGCAGAAACAGCACCAGA+TGG + chr1_2:57810331-57810350 None:intergenic 50.0%
GCGTATGCATTGTGCGAATC+AGG + chr1_2:57810373-57810392 None:intergenic 50.0%
TCATGCCATGGAACACTTGC+TGG - chr1_2:57810399-57810418 Msa0079790:intron 50.0%
CAGACATCCCACCATTGAAC+AGG + chr1_2:57810559-57810578 None:intergenic 50.0%
! TCTATATCGGGGAGTACACC+TGG - chr1_2:57810610-57810629 Msa0079790:intron 50.0%
AGGTGCATATAAACTCCGGG+AGG - chr1_2:57810743-57810762 Msa0079790:intron 50.0%
ACTCCGGGAGGATACCAATT+TGG - chr1_2:57810755-57810774 Msa0079790:intron 50.0%
CTGCCAAATTGGTATCCTCC+CGG + chr1_2:57810761-57810780 None:intergenic 50.0%
! TCTTTGGCGGATGTAAGTGC+TGG + chr1_2:57812833-57812852 None:intergenic 50.0%
GTTTCCAGCTAGGTCTTTGG+CGG + chr1_2:57812846-57812865 None:intergenic 50.0%
GCTTCAGCTGCTGTAAGCAT+CGG + chr1_2:57812898-57812917 None:intergenic 50.0%
CAGCAGCTGAAGCTATAGCT+AGG - chr1_2:57812905-57812924 Msa0079790:CDS 50.0%
TTGACACGGAGGATCAAACC+TGG - chr1_2:57813327-57813346 Msa0079790:intron 50.0%
!! TGGGTCAGATTTGGTGTGGA+TGG + chr1_2:57813775-57813794 None:intergenic 50.0%
ATGGAAAGCCAAGGTCAAGG+TGG - chr1_2:57814353-57814372 Msa0079790:intron 50.0%
TGGAAAGCCAAGGTCAAGGT+GGG - chr1_2:57814354-57814373 Msa0079790:intron 50.0%
!! TGGTGGTTGGTGATAGACCA+GGG - chr1_2:57814497-57814516 Msa0079790:intron 50.0%
TCAGATTTCTCCCTGCCAGA+GGG + chr1_2:57815098-57815117 None:intergenic 50.0%
ATCAGATTTCTCCCTGCCAG+AGG + chr1_2:57815099-57815118 None:intergenic 50.0%
GCCGCGATTCTGCTATGCTT+TGG + chr1_2:57806530-57806549 None:intergenic 55.0%
TCCGTCGCTGCTTCTATCTC+CGG - chr1_2:57806904-57806923 Msa0079790:CDS 55.0%
CCTCTCCCTGCAAAAGCAGA+GGG - chr1_2:57808179-57808198 Msa0079790:intron 55.0%
!! CACAGCCCTCTGCTTTTGCA+GGG + chr1_2:57808187-57808206 None:intergenic 55.0%
!! TCACAGCCCTCTGCTTTTGC+AGG + chr1_2:57808188-57808207 None:intergenic 55.0%
GCAAAAGCAGAGGGCTGTGA+AGG - chr1_2:57808188-57808207 Msa0079790:intron 55.0%
AGATGGCCACAACGAAGCTC+AGG - chr1_2:57808289-57808308 Msa0079790:intron 55.0%
AGCGAAGAGCTACCCAATGG+AGG + chr1_2:57808581-57808600 None:intergenic 55.0%
TATCCTGTGCCTCAGTTGGG+TGG - chr1_2:57808842-57808861 Msa0079790:intron 55.0%
ATCCTGTGCCTCAGTTGGGT+GGG - chr1_2:57808843-57808862 Msa0079790:intron 55.0%
ATTCCTTGCCCACCCAACTG+AGG + chr1_2:57808854-57808873 None:intergenic 55.0%
TCAGTTGGGTGGGCAAGGAA+TGG - chr1_2:57808853-57808872 Msa0079790:intron 55.0%
TTGGGTGGGCAAGGAATGGT+TGG - chr1_2:57808857-57808876 Msa0079790:intron 55.0%
TGGGTGGGCAAGGAATGGTT+GGG - chr1_2:57808858-57808877 Msa0079790:intron 55.0%
GCTATGGTCCGATGGCTGTA+GGG - chr1_2:57808891-57808910 Msa0079790:intron 55.0%
GAGGCATAAGCTAACCACCG+TGG + chr1_2:57808917-57808936 None:intergenic 55.0%
!! GATGTTGATGGGCTGACAGC+AGG + chr1_2:57808995-57809014 None:intergenic 55.0%
!! CCGCTGCTTGGTGATGTTGA+TGG + chr1_2:57809007-57809026 None:intergenic 55.0%
ATCACCAAGCAGCGGAAACC+TGG - chr1_2:57809012-57809031 Msa0079790:intron 55.0%
CCATAGCATATCGGGCTACC+AGG + chr1_2:57809033-57809052 None:intergenic 55.0%
CCTGGTAGCCCGATATGCTA+TGG - chr1_2:57809030-57809049 Msa0079790:intron 55.0%
ACAGGGGAACTGGATCCATC+AGG + chr1_2:57809142-57809161 None:intergenic 55.0%
AGAAACAGATGCGGCTGGAG+TGG - chr1_2:57809210-57809229 Msa0079790:intron 55.0%
CACCTTTACAAGCTCCACCG+TGG - chr1_2:57809701-57809720 Msa0079790:intron 55.0%
TGCCACGGTGGAGCTTGTAA+AGG + chr1_2:57809706-57809725 None:intergenic 55.0%
GGTTGCCGTCATTTCCTCCA+AGG - chr1_2:57810033-57810052 Msa0079790:intron 55.0%
GGAGTGAACCACCATGGTAG+AGG + chr1_2:57810157-57810176 None:intergenic 55.0%
GGTGGCAAAGCTGTTGATGC+TGG + chr1_2:57810195-57810214 None:intergenic 55.0%
GAAAAGCAGGAGGTTGGGGT+GGG + chr1_2:57810216-57810235 None:intergenic 55.0%
AGAAAAGCAGGAGGTTGGGG+TGG + chr1_2:57810217-57810236 None:intergenic 55.0%
! ATATCGGGGAGTACACCTGG+TGG - chr1_2:57810613-57810632 Msa0079790:intron 55.0%
TCAGCAGTTTCCAGTCCACC+AGG + chr1_2:57810631-57810650 None:intergenic 55.0%
TTCAGTCCACTTGGGGTGAC+AGG - chr1_2:57811037-57811056 Msa0079790:intron 55.0%
CTGTTACCTGTCACCCCAAG+TGG + chr1_2:57811046-57811065 None:intergenic 55.0%
ACATCCGCCAAAGACCTAGC+TGG - chr1_2:57812839-57812858 Msa0079790:CDS 55.0%
GGGTAGAAGAATAGGAGGCC+TGG - chr1_2:57813043-57813062 Msa0079790:CDS 55.0%
GAAGTGATCTCAGCAGTGCC+AGG + chr1_2:57813064-57813083 None:intergenic 55.0%
ATTGGCAGCTTCTGGTGCTC+TGG - chr1_2:57813095-57813114 Msa0079790:CDS 55.0%
TTGGCAGCTTCTGGTGCTCT+GGG - chr1_2:57813096-57813115 Msa0079790:CDS 55.0%
TGTTAGGTGGCAGCATACGG+TGG - chr1_2:57813158-57813177 Msa0079790:intron 55.0%
GTTAGGTGGCAGCATACGGT+GGG - chr1_2:57813159-57813178 Msa0079790:intron 55.0%
GTTGCTGCCACCATCTACCA+CGG + chr1_2:57813215-57813234 None:intergenic 55.0%
GGAAAGCCAAGGTCAAGGTG+GGG - chr1_2:57814355-57814374 Msa0079790:intron 55.0%
!! GTGGTGGTTGGTGATAGACC+AGG - chr1_2:57814496-57814515 Msa0079790:intron 55.0%
GTGATAGACCAGGGAGAGAG+AGG - chr1_2:57814506-57814525 Msa0079790:intron 55.0%
! GTGGATTGTAGCAGTCCCTC+TGG - chr1_2:57815080-57815099 Msa0079790:CDS 55.0%
ATTGTAGCAGTCCCTCTGGC+AGG - chr1_2:57815084-57815103 Msa0079790:CDS 55.0%
TTGTAGCAGTCCCTCTGGCA+GGG - chr1_2:57815085-57815104 Msa0079790:CDS 55.0%
AGTCGCGGAACGCAGTCGAT+CGG + chr1_2:57806699-57806718 None:intergenic 60.0%
CGTTCCGCGACTTTCGTCGT+CGG - chr1_2:57806707-57806726 Msa0079790:intron 60.0%
ACTTTCGTCGTCGGCAGGGA+CGG - chr1_2:57806716-57806735 Msa0079790:intron 60.0%
CGGAATTCCCGGTCACTCAC+CGG - chr1_2:57806736-57806755 Msa0079790:intron 60.0%
AATTCCCGGTCACTCACCGG+TGG - chr1_2:57806739-57806758 Msa0079790:CDS 60.0%
GGAGATAGAAGCAGCGACGG+AGG + chr1_2:57806905-57806924 None:intergenic 60.0%
GCCGGAGATAGAAGCAGCGA+CGG + chr1_2:57806908-57806927 None:intergenic 60.0%
GCTGCTTCTATCTCCGGCGA+TGG - chr1_2:57806910-57806929 Msa0079790:CDS 60.0%
GCCTCTCCCTGCAAAAGCAG+AGG - chr1_2:57808178-57808197 Msa0079790:intron 60.0%
!! CCCTCTGCTTTTGCAGGGAG+AGG + chr1_2:57808182-57808201 None:intergenic 60.0%
GGGAGCGAAGAGCTACCCAA+TGG + chr1_2:57808584-57808603 None:intergenic 60.0%
GGGTGGGCAAGGAATGGTTG+GGG - chr1_2:57808859-57808878 Msa0079790:intron 60.0%
GGCTATGGTCCGATGGCTGT+AGG - chr1_2:57808890-57808909 Msa0079790:intron 60.0%
GCAGGAGGAGTCGGACTTTG+AGG + chr1_2:57808977-57808996 None:intergenic 60.0%
!! GTTGATGGGCTGACAGCAGG+AGG + chr1_2:57808992-57809011 None:intergenic 60.0%
GCTACCAGGTTTCCGCTGCT+TGG + chr1_2:57809019-57809038 None:intergenic 60.0%
TGGCAGCTTCTGGTGCTCTG+GGG - chr1_2:57813097-57813116 Msa0079790:CDS 60.0%
GTGGGTGGGTCAGGCAACAA+TGG - chr1_2:57813177-57813196 Msa0079790:intron 60.0%
GGTGGGTCAGGCAACAATGG+TGG - chr1_2:57813180-57813199 Msa0079790:intron 60.0%
GGTCAGGCAACAATGGTGGC+AGG - chr1_2:57813184-57813203 Msa0079790:intron 60.0%
GGCAACAATGGTGGCAGGCA+CGG - chr1_2:57813189-57813208 Msa0079790:intron 60.0%
AAGCCAAGGTCAAGGTGGGG+TGG - chr1_2:57814358-57814377 Msa0079790:intron 60.0%
AGCCAAGGTCAAGGTGGGGT+GGG - chr1_2:57814359-57814378 Msa0079790:intron 60.0%
TCTCTCGTCCTCTCTCTCCC+TGG + chr1_2:57814517-57814536 None:intergenic 60.0%
ACGACGGAGTTGGCCGTGCA+CGG + chr1_2:57806656-57806675 None:intergenic 65.0%
CCTGCCGACGACGAAAGTCG+CGG + chr1_2:57806714-57806733 None:intergenic 65.0%
CGCGACTTTCGTCGTCGGCA+GGG - chr1_2:57806712-57806731 Msa0079790:intron 65.0%
GTCGGCAGGGACGGAATTCC+CGG - chr1_2:57806725-57806744 Msa0079790:intron 65.0%
TGCCCACCCAACTGAGGCAC+AGG + chr1_2:57808848-57808867 None:intergenic 65.0%
GTGCCTCAGTTGGGTGGGCA+AGG - chr1_2:57808848-57808867 Msa0079790:intron 65.0%
GTCCGATGGCTGTAGGGCCA+CGG - chr1_2:57808897-57808916 Msa0079790:intron 65.0%
CACCGTGGCCCTACAGCCAT+CGG + chr1_2:57808902-57808921 None:intergenic 65.0%
GGGCTGACAGCAGGAGGAGT+CGG + chr1_2:57808986-57809005 None:intergenic 65.0%
CTGCGGATGTCATGCCACGG+TGG + chr1_2:57809718-57809737 None:intergenic 65.0%
AAGCAGGAGGTTGGGGTGGG+TGG + chr1_2:57810213-57810232 None:intergenic 65.0%
! GGGGAGTACACCTGGTGGAC+TGG - chr1_2:57810618-57810637 Msa0079790:intron 65.0%
GGCAGCTTCTGGTGCTCTGG+GGG - chr1_2:57813098-57813117 Msa0079790:CDS 65.0%
AGGTGGCAGCATACGGTGGG+TGG - chr1_2:57813162-57813181 Msa0079790:intron 65.0%
GGTGGCAGCATACGGTGGGT+GGG - chr1_2:57813163-57813182 Msa0079790:intron 65.0%
CAGCATACGGTGGGTGGGTC+AGG - chr1_2:57813168-57813187 Msa0079790:intron 65.0%
CACCCACCCCACCTTGACCT+TGG + chr1_2:57814364-57814383 None:intergenic 65.0%
ACGGAGTTGGCCGTGCACGG+CGG + chr1_2:57806653-57806672 None:intergenic 70.0%
CCGCGACTTTCGTCGTCGGC+AGG - chr1_2:57806711-57806730 Msa0079790:intron 70.0%
TCCCGGTCACTCACCGGTGG+TGG - chr1_2:57806742-57806761 Msa0079790:CDS 70.0%
GCCACCACCGGTGAGTGACC+GGG + chr1_2:57806746-57806765 None:intergenic 70.0%
GGCCACCACCGGTGAGTGAC+CGG + chr1_2:57806747-57806766 None:intergenic 70.0%
TCCTCCGGCGTCCGAACTGC+CGG - chr1_2:57806877-57806896 Msa0079790:CDS 70.0%
! AGAAGCAGCGACGGAGGCGC+CGG + chr1_2:57806899-57806918 None:intergenic 70.0%
CGATGGCTGTAGGGCCACGG+TGG - chr1_2:57808900-57808919 Msa0079790:intron 70.0%
AATGGTGGCAGGCACGGCCG+TGG - chr1_2:57813195-57813214 Msa0079790:intron 70.0%
GCAGGCACGGCCGTGGTAGA+TGG - chr1_2:57813202-57813221 Msa0079790:intron 70.0%
GGCACGGCCGTGGTAGATGG+TGG - chr1_2:57813205-57813224 Msa0079790:intron 70.0%
!! CGACGGAGGCGCCGGCAGTT+CGG + chr1_2:57806891-57806910 None:intergenic 75.0%
! GCCGGCAGTTCGGACGCCGG+AGG + chr1_2:57806881-57806900 None:intergenic 80.0%
!!! GGCGCCGGCAGTTCGGACGC+CGG + chr1_2:57806884-57806903 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 57806423 57815487 57806423 ID=Msa0079790;Name=Msa0079790
chr1_2 mRNA 57806423 57815487 57806423 ID=Msa0079790-mRNA-1;Parent=Msa0079790;Name=Msa0079790-mRNA-1;_AED=0.22;_eAED=0.22;_QI=361|0.66|0.7|0.9|0.88|0.8|10|0|920
chr1_2 exon 57806423 57806445 57806423 ID=Msa0079790-mRNA-1:exon:18434;Parent=Msa0079790-mRNA-1
chr1_2 exon 57806737 57807054 57806737 ID=Msa0079790-mRNA-1:exon:18433;Parent=Msa0079790-mRNA-1
chr1_2 exon 57809822 57809952 57809822 ID=Msa0079790-mRNA-1:exon:18432;Parent=Msa0079790-mRNA-1
chr1_2 exon 57810852 57811027 57810852 ID=Msa0079790-mRNA-1:exon:18431;Parent=Msa0079790-mRNA-1
chr1_2 exon 57811121 57811915 57811121 ID=Msa0079790-mRNA-1:exon:18430;Parent=Msa0079790-mRNA-1
chr1_2 exon 57812174 57812419 57812174 ID=Msa0079790-mRNA-1:exon:18429;Parent=Msa0079790-mRNA-1
chr1_2 exon 57812679 57813119 57812679 ID=Msa0079790-mRNA-1:exon:18428;Parent=Msa0079790-mRNA-1
chr1_2 exon 57813456 57813876 57813456 ID=Msa0079790-mRNA-1:exon:18427;Parent=Msa0079790-mRNA-1
chr1_2 exon 57814653 57814696 57814653 ID=Msa0079790-mRNA-1:exon:18426;Parent=Msa0079790-mRNA-1
chr1_2 exon 57814959 57815487 57814959 ID=Msa0079790-mRNA-1:exon:18425;Parent=Msa0079790-mRNA-1
chr1_2 five_prime_UTR 57815127 57815487 57815127 ID=Msa0079790-mRNA-1:five_prime_utr;Parent=Msa0079790-mRNA-1
chr1_2 CDS 57814959 57815126 57814959 ID=Msa0079790-mRNA-1:cds;Parent=Msa0079790-mRNA-1
chr1_2 CDS 57814653 57814696 57814653 ID=Msa0079790-mRNA-1:cds;Parent=Msa0079790-mRNA-1
chr1_2 CDS 57813456 57813876 57813456 ID=Msa0079790-mRNA-1:cds;Parent=Msa0079790-mRNA-1
chr1_2 CDS 57812679 57813119 57812679 ID=Msa0079790-mRNA-1:cds;Parent=Msa0079790-mRNA-1
chr1_2 CDS 57812174 57812419 57812174 ID=Msa0079790-mRNA-1:cds;Parent=Msa0079790-mRNA-1
chr1_2 CDS 57811121 57811915 57811121 ID=Msa0079790-mRNA-1:cds;Parent=Msa0079790-mRNA-1
chr1_2 CDS 57810852 57811027 57810852 ID=Msa0079790-mRNA-1:cds;Parent=Msa0079790-mRNA-1
chr1_2 CDS 57809822 57809952 57809822 ID=Msa0079790-mRNA-1:cds;Parent=Msa0079790-mRNA-1
chr1_2 CDS 57806737 57807054 57806737 ID=Msa0079790-mRNA-1:cds;Parent=Msa0079790-mRNA-1
chr1_2 CDS 57806423 57806445 57806423 ID=Msa0079790-mRNA-1:cds;Parent=Msa0079790-mRNA-1
Gene Sequence

>Msa0079790

ATGAAGAAACAAGGAAAGAACAACAACGGTTCCAAGAGCAATGGATTCGTTCCTTCTTCTTTCAAGTTCATTTCGTCTTGCATTAAGACGGCTTCCTCCGGCGTCCGAACTGCCGGCGCCTCCGTCGCTGCTTCTATCTCCGGCGATGGAACCGATCGTAAAGATCAGGTTAATTTTGGATTATTGAATGAAGTTGAAGATGTAATCCACTTGCTAGAGCTCGGTCTGTCTTCTTTCAAACGTGTACTCCTACTCGGTTATTCCAATGGATTTCAAGTTCTCGATGTGGAAGATGCCTCTAATATCAGGGAACTTGTCTCAAAACGTGATGATCCAGTTTCGTTTTTACAGATGCAGCCTCTCCCTGCAAAAGCAGAGGGCTGTGAAGGATTTAGAGCATCACATCCTTTACTCTTGGTTGTTGCATGTGATAAATCAAAGATACCTGGTACAGTGCAAAATGTCAAAGATGGCCACAACGAAGCTCAGGCTGAAAATATTATCAACTCAGCTACAACTGTTAGATTCTACTCACTAAGGTCCCATACCTATGTTCATGCTCTAAGATTCCGTTCAACTGTCTACATGGTTAGATGCAGTCCTCAAATAGTCGCTGTGGGTCTTGCTACTCAAATATACTGTTTTGATGCTCTTACTCTTGAGAATAAATTCAGTGTTCTCACTTATCCTGTGCCTCAGTTGGGTGGGCAAGGAATGGTTGGGGTTAATATTGGCTATGGTCCGATGGCTGTAGGGCCACGGTGGTTAGCTTATGCCTCCAACAACCCATTGTTGTTAAACACAAGTCGCTTAAGTCCTCAAAGTCCGACTCCTCCTGCTGTCAGCCCATCAACATCACCAAGCAGCGGAAACCTGGTAGCCCGATATGCTATGGAATCTAGCAAGCATTTGGCTTCTGGGCTGATCAATCTTAGTGATATGGGCTACAAAACACTGTCTAAATATTATCAAGATCTAATGCCTGATGGATCCAGTTCCCCTGTATCACCGAATTCAGGCTGGAAAGTTAGTCGATTTGCTTCAAATTCTACAGAAACAGATGCGGCTGGAGTGGTTGTTGTCAAGGATTTTGTTTCTAGAGCGGTTGTGGCACAATTTAGGGCCCATACTAGTCCTATATCTGCGCTATGTTTTGATCAGAGTGGAACACTTCTAGTTACAGCCTCAATTCATGGTAATAACATCAACATATTTCGAATTATGCCTTCCTACTCAAAGAAAGGATCGGGTTCTCAAAGCAATGATTGGAGTTGTTCTCATGTGCACCTTTACAAGCTCCACCGTGGCATGACATCCGCAGTAATACAAGATATTTGTTTTAGTCATTACAGTCAGTGGGTTGCCGTCATTTCCTCCAAGGGAACTTGTCATATTTTTGTCCTTTCCCCTTTTGGTGGTGAGACAGTTCTTAAGATACACAATCAGGACACAGAAGGACCTGTTCTTTTGCCGGTTTTTCCTCTACCATGGTGGTTCACTCCACATTTTACTGTAAACCAGCATCAACAGCTTTGCCACCCACCCCAACCTCCTGCTTTTCTTTCTGTGGTTAGCAGAATAAAAAATGTTAATGCCGGATGGCTTAATACGGTTAGTAATGTTTCATCTTCTGCAGCAGGGAAAGTCTCAGTTCCATCTGGTGCTGTTTCTGCTGTCTTTCATAGTTCTGTTCCTCCTGATTCGCACAATGCATACGCAAAAGTTCATGCCATGGAACACTTGCTGGTTTATACTCCTTCTGGTCACTTAATTCAGTATAACCTACTATCGTCATTGATGGCAGAGCCAAATGAAACTGCTTCAAGAACAGCTCAAGTTCCTTCACAGATACAAGAAGAAGATTTACGAGTGAAAGTGGAACCTGTTCAATGGTGGGATGTCTGTAGAAGATATGATTGGCAAGAAAAAGAGGTTTCTATATCGGGGAGTACACCTGGTGGACTGGAAACTGCTGAAATGATATTGGATGTTTCAAATTGTGAAAATTATAGTGTTGGGAATGATGATTCCATAAAACTTAATCAGGATTGTCACGTCTCAAATGCAGAGGTGCATATAAACTCCGGGAGGATACCAATTTGGCAGAAATCTGAGGTGTCTTTCTTTGTGATGGGTTCTTTTGAAACTGAAGAGCTGAATAAATGTGAACTTTTAACCAATGGGGAGATTGAAATAGAGGATATTCCTGTTAATGAGGTTGAAATAAGACAGAAGGTTTTGTTGCCCGTCCTTGATCATTTCCACAAAATTCAGTCCACTTGGGGTGACAGAGGCATTGTTCTGGGAAGATGCTCTAGCTCTTCATCTGATTCACATGCAACTGAAGAGAAGTTGTCAGAAGATGCTGCGATTTCCCATCCGAAGTTAACTGTACCTGGCTTTGTGGGAAAAACATATGTTGTAGGTGCCTCAAATTTCTCTGATGGTATAGCTACAAAGGTTAAATCATCAGAACATGGAAAAGTCAGTGACAATTTCAATTCAAGTTTTAGTGGTTCAGATATGAATATGCATGTTACTTGTGAGGAGTCAATACGTGACTCGCCAGACCATGATCAATTTTTTCAAGAGGGTTATTGTAAAGCATCAGTTGACTGTCATGAATCAGCAGAAGTTACTACTGATGTGGATTGTAGCAGTCCCTCTGGCAGGGAGAAATCTGATGAAGATGGTGATAATGATGACATGCTTGGTGATATATTTGACTTCTCCGAGGAAGGTGATTTCCTTGCAACAAGCTAA
Protein sequence

>Msa0079790

MKKQGKNNNGSKSNGFVPSSFKFISSCIKTASSGVRTAGASVAASISGDGTDRKDQVNFGLLNEVEDVIHLLELGLSSFKRVLLLGYSNGFQVLDVEDASNIRELVSKRDDPVSFLQMQPLPAKAEGCEGFRASHPLLLVVACDKSKIPGTVQNVKDGHNEAQAENIINSATTVRFYSLRSHTYVHALRFRSTVYMVRCSPQIVAVGLATQIYCFDALTLENKFSVLTYPVPQLGGQGMVGVNIGYGPMAVGPRWLAYASNNPLLLNTSRLSPQSPTPPAVSPSTSPSSGNLVARYAMESSKHLASGLINLSDMGYKTLSKYYQDLMPDGSSSPVSPNSGWKVSRFASNSTETDAAGVVVVKDFVSRAVVAQFRAHTSPISALCFDQSGTLLVTASIHGNNINIFRIMPSYSKKGSGSQSNDWSCSHVHLYKLHRGMTSAVIQDICFSHYSQWVAVISSKGTCHIFVLSPFGGETVLKIHNQDTEGPVLLPVFPLPWWFTPHFTVNQHQQLCHPPQPPAFLSVVSRIKNVNAGWLNTVSNVSSSAAGKVSVPSGAVSAVFHSSVPPDSHNAYAKVHAMEHLLVYTPSGHLIQYNLLSSLMAEPNETASRTAQVPSQIQEEDLRVKVEPVQWWDVCRRYDWQEKEVSISGSTPGGLETAEMILDVSNCENYSVGNDDSIKLNQDCHVSNAEVHINSGRIPIWQKSEVSFFVMGSFETEELNKCELLTNGEIEIEDIPVNEVEIRQKVLLPVLDHFHKIQSTWGDRGIVLGRCSSSSSDSHATEEKLSEDAAISHPKLTVPGFVGKTYVVGASNFSDGIATKVKSSEHGKVSDNFNSSFSGSDMNMHVTCEESIRDSPDHDQFFQEGYCKASVDCHESAEVTTDVDCSSPSGREKSDEDGDNDDMLGDIFDFSEEGDFLATS*