AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127420 MtrunA17_Chr1g0191361 92.639 951 25 1 1 951 1 906 0.0 1807
Msa0127420 MtrunA17_Chr1g0196371 49.310 1014 400 24 3 950 2 967 0.0 857
Msa0127420 MtrunA17_Chr2g0319371 39.004 823 412 23 12 781 27 812 2.04e-157 486
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127420 AT1G54710.1 53.605 957 387 16 4 951 18 926 0.0 887
Msa0127420 AT1G03380.1 53.382 828 319 17 1 789 1 800 0.0 785
Msa0127420 AT1G54710.2 52.118 850 353 15 111 951 1 805 0.0 764
Msa0127420 AT5G54730.1 33.972 783 400 24 1 753 1 696 2.47e-109 356
Msa0127420 AT5G54730.2 33.981 618 305 21 161 753 45 584 2.27e-85 288

Find 260 sgRNAs with CRISPR-Local

Find 564 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCGGTTGTGGCACAATTT+AGG 0.179862 1_3:+56653311 Msa0127420:CDS
TCTAGCAAGCATTTGGCTTC+TGG 0.212143 1_3:+56652850 Msa0127420:CDS
ACCTCAGATTTCTGCCAAAT+TGG 0.244250 1_3:-56654572 None:intergenic
GCTGATCAATCTTAGTGATA+TGG 0.272322 1_3:+56652873 Msa0127420:CDS
CCGCTGCTTGGTGATGTTGA+TGG 0.280443 1_3:-56652799 None:intergenic
ATCACAACCGTCTTCGTTAA+AGG 0.281183 1_3:+56650367 Msa0127420:five_prime_UTR
CTTATTTCAACCTCATTAAC+AGG 0.291043 1_3:-56654776 None:intergenic
AGCGGTTGTGGCACAATTTA+GGG 0.293715 1_3:+56653312 Msa0127420:CDS
AACGAGCAATTTCATAATCT+TGG 0.297757 1_3:-56658506 None:intergenic
TTGCTGGTTTATACTCCTTC+TGG 0.302626 1_3:+56654215 Msa0127420:CDS
CTAGTTACAGCCTCAATTCA+TGG 0.319946 1_3:+56653385 Msa0127420:CDS
CTAGCAAGCATTTGGCTTCT+GGG 0.324176 1_3:+56652851 Msa0127420:CDS
GGAACGGTTGGGGTTAATAT+TGG 0.327014 1_3:+56652664 Msa0127420:CDS
CACTTATCCTGTGCCTCAGT+TGG 0.327207 1_3:+56652633 Msa0127420:CDS
GCGTATGCATTGTGCGAATC+AGG 0.330024 1_3:-56654170 None:intergenic
TCATGCCATGGAACACTTGC+TGG 0.331523 1_3:+56654199 Msa0127420:CDS
GCAGGCACGGCCGTGGTAGA+TGG 0.334245 1_3:+56656995 Msa0127420:CDS
GGAAACTGCTGAAATGATAT+TGG 0.334443 1_3:+56654442 Msa0127420:CDS
TGGAAGATGCCTCTAATATC+AGG 0.335031 1_3:+56651904 Msa0127420:CDS
GTCGGCAGGGACGGAATTCC+CGG 0.336411 1_3:+56650521 Msa0127420:five_prime_UTR
GCGCAGATATAGGACTAGTA+TGG 0.338742 1_3:-56653336 None:intergenic
CAGCCTGAATTCGGTGATAC+AGG 0.346522 1_3:-56652952 None:intergenic
CGCTGCTTGGTGATGTTGAT+GGG 0.347448 1_3:-56652798 None:intergenic
TCCCCTGTATCACCGAATTC+AGG 0.357654 1_3:+56652949 Msa0127420:CDS
GTTCTTGAAGCAGTTTCATT+TGG 0.358792 1_3:-56654281 None:intergenic
TGATTCCGTAAAACTTAATC+AGG 0.359118 1_3:+56654502 Msa0127420:CDS
AATTGTCAGAGGCATTGTTC+TGG 0.359360 1_3:+56655744 Msa0127420:intron
GACAAGTTCCCTGATATTAG+AGG 0.368128 1_3:-56651913 None:intergenic
TTAGGTGTCTTTCTTTGTGA+TGG 0.368906 1_3:+56654682 Msa0127420:intron
ACTCCGGGAGGATACCAATT+TGG 0.373742 1_3:+56654558 Msa0127420:CDS
TGCTTTGGGCTTGCTTTGAC+AGG 0.379869 1_3:+56651808 Msa0127420:CDS
TGCTAGATTCCATAGCATAT+CGG 0.384870 1_3:-56652834 None:intergenic
CCGCGACTCTCGTCGTCGGC+AGG 0.393184 1_3:+56650507 Msa0127420:five_prime_UTR
AGAAGCAGCGACGGAGGCGC+CGG 0.397817 1_3:-56650692 None:intergenic
CTAACTTTCCAGCCTGAATT+CGG 0.399263 1_3:-56652961 None:intergenic
AGAAAGAAAAGCAGGAGGTT+GGG 0.404547 1_3:-56654018 None:intergenic
GACTTGTGTTTAACAACAAT+GGG 0.406696 1_3:-56652738 None:intergenic
TCAAAACATAGCGCAGATAT+AGG 0.408648 1_3:-56653346 None:intergenic
TGGGTGGGCAAGGAACGGTT+GGG 0.411362 1_3:+56652653 Msa0127420:CDS
TTGGGTGGGCAAGGAACGGT+TGG 0.414520 1_3:+56652652 Msa0127420:CDS
GCTACCAGGTTTCCGCTGCT+TGG 0.417730 1_3:-56652811 None:intergenic
TAGGTGTCTTTCTTTGTGAT+GGG 0.424566 1_3:+56654683 Msa0127420:intron
ATTGTGAAAATTATAGTGTT+GGG 0.425168 1_3:+56654474 Msa0127420:CDS
AATTGTGAAAATTATAGTGT+TGG 0.429375 1_3:+56654473 Msa0127420:CDS
GGCCACCACCGGTGAGTGAC+CGG 0.430899 1_3:-56650540 None:intergenic
TTCAGTCCACTTGGGGTGAC+AGG 0.431138 1_3:+56654840 Msa0127420:CDS
GCCGCGATTCTGCTATGCTT+TGG 0.433374 1_3:-56650323 None:intergenic
AGCATCACATCCTTTACTCT+TGG 0.434935 1_3:+56652013 Msa0127420:CDS
GCAGGAGGAGTCGGACTTTG+AGG 0.438368 1_3:-56652769 None:intergenic
AATGTTTCATCTTCTGCAGC+AGG 0.443523 1_3:+56654092 Msa0127420:CDS
ATTGTCAGAGGCATTGTTCT+GGG 0.446262 1_3:+56655745 Msa0127420:intron
CGGGTTCTCAAAGCAATGAT+TGG 0.446623 1_3:+56653458 Msa0127420:CDS
TAACCTACTATCGTCATTGA+TGG 0.448610 1_3:+56654253 Msa0127420:CDS
TATGGAATCTAGCAAGCATT+TGG 0.451298 1_3:+56652843 Msa0127420:CDS
CTGATCAATCTTAGTGATAT+GGG 0.453531 1_3:+56652874 Msa0127420:CDS
ATTCGGTGATACAGGGGAAC+TGG 0.455908 1_3:-56652944 None:intergenic
CTCTATTTCAATCTCCCCAT+TGG 0.457148 1_3:-56654747 None:intergenic
TTAACTGTACCTGGCTTTGT+GGG 0.458457 1_3:+56655847 Msa0127420:CDS
AAGCAGGAGGTTGGGGTGGG+TGG 0.460095 1_3:-56654010 None:intergenic
CAATGGGGAGATTGAAATAG+AGG 0.461586 1_3:+56654748 Msa0127420:CDS
CGACTTGTGTTTAACAACAA+TGG 0.461697 1_3:-56652739 None:intergenic
AGGGAGTACACCTGGTGGAC+TGG 0.461803 1_3:+56654421 Msa0127420:CDS
AGAAAAGCAGGAGGTTGGGG+TGG 0.461895 1_3:-56654014 None:intergenic
CATCCGAAGTTAACTGTACC+TGG 0.462498 1_3:+56655838 Msa0127420:CDS
CACAAAATTCAGTCCACTTG+GGG 0.463372 1_3:+56654833 Msa0127420:CDS
ACTTATCCTGTGCCTCAGTT+GGG 0.463385 1_3:+56652634 Msa0127420:CDS
GTTAACTGTACCTGGCTTTG+TGG 0.465939 1_3:+56655846 Msa0127420:CDS
ATTGTAGCAGTCCCTCTGGC+AGG 0.468310 1_3:+56657887 Msa0127420:CDS
AGACCCACAGCGACTATTTG+AGG 0.470535 1_3:-56652218 None:intergenic
GCTAGATTCCATAGCATATC+GGG 0.471561 1_3:-56652833 None:intergenic
GTGCCTCAGTTGGGTGGGCA+AGG 0.473182 1_3:+56652643 Msa0127420:CDS
TTTACGATCGGTTCCATCGC+CGG 0.473917 1_3:-56650719 None:intergenic
GGTGGCAAAGCTGTTGATGC+TGG 0.477418 1_3:-56653992 None:intergenic
AGAACTGTCTCACCACCAAA+AGG 0.478321 1_3:-56653882 None:intergenic
TCCTCCGGCGTCCGTACTGC+CGG 0.479276 1_3:+56650673 Msa0127420:CDS
CCATAGCATATCGGGCTACC+AGG 0.479379 1_3:-56652825 None:intergenic
AGAAGATTTACGAGTGAAAG+TGG 0.482850 1_3:+56654334 Msa0127420:CDS
CAGACATCCCACCATTGAAC+AGG 0.484714 1_3:-56654359 None:intergenic
GAAAGAAAAGCAGGAGGTTG+GGG 0.484867 1_3:-56654017 None:intergenic
CTGCCATCAATGACGATAGT+AGG 0.485387 1_3:-56654256 None:intergenic
ATCGAGAACTTGAAATCCAT+TGG 0.485519 1_3:-56651880 None:intergenic
TCCTACTCAAAGAAAGGATC+GGG 0.486675 1_3:+56653439 Msa0127420:CDS
TTTCAGATTCGTACCTTCCT+CGG 0.487984 1_3:-56657968 None:intergenic
TATCCTGTGCCTCAGTTGGG+TGG 0.488213 1_3:+56652637 Msa0127420:CDS
TCCACAAAATTCAGTCCACT+TGG 0.488720 1_3:+56654831 Msa0127420:CDS
AGGAACGAATCCATTGCTCT+TGG 0.493674 1_3:-56650611 None:intergenic
ATTCCGTTCAACTGTCTACA+TGG 0.494684 1_3:+56652184 Msa0127420:CDS
TCCCGGTCACTCACCGGTGG+TGG 0.495181 1_3:+56650538 Msa0127420:five_prime_UTR
AGATGGCCACAACGAAGCTC+AGG 0.495493 1_3:+56652085 Msa0127420:CDS
ACTCTCGTCGTCGGCAGGGA+CGG 0.495951 1_3:+56650512 Msa0127420:five_prime_UTR
AGAGTTTATAGAGTGGAGGA+AGG 0.496618 1_3:+56658476 Msa0127420:intron
CCACAAAATTCAGTCCACTT+GGG 0.496716 1_3:+56654832 Msa0127420:CDS
GTTTAACAACAATGGGTTGT+TGG 0.498232 1_3:-56652731 None:intergenic
CTCCTACTCGGTTATTCCAA+TGG 0.498897 1_3:+56651864 Msa0127420:CDS
AGGTGGCAGCATACAGTGGG+TGG 0.499305 1_3:+56656955 Msa0127420:CDS
CGACGGAGGCGCCGGCAGTA+CGG 0.499615 1_3:-56650684 None:intergenic
TGCATTAAGACGGCTTCCTC+CGG 0.501805 1_3:+56650658 Msa0127420:CDS
GGGTGGGCAAGGAACGGTTG+GGG 0.507157 1_3:+56652654 Msa0127420:CDS
ATGCCTTCCTACTCAAAGAA+AGG 0.510586 1_3:+56653433 Msa0127420:CDS
GTCCGATGGCTGTAGGGCCA+CGG 0.511127 1_3:+56652692 Msa0127420:CDS
TGGAACCGATCGTAAAGATC+AGG 0.512333 1_3:+56650726 Msa0127420:CDS
CAGGTACAGTTAACTTCGGA+TGG 0.512564 1_3:-56655837 None:intergenic
GAACTGTCTCACCACCAAAA+GGG 0.513131 1_3:-56653881 None:intergenic
TAATGCCGGATGGCTTAATA+CGG 0.513868 1_3:+56654064 Msa0127420:CDS
TGCTTTGACAGGCTAGAGCT+CGG 0.514606 1_3:+56651819 Msa0127420:CDS
AGAGTTGAAGACGACGGAGT+TGG 0.515686 1_3:-56650459 None:intergenic
GGCTATGGTCCGATGGCTGT+AGG 0.516684 1_3:+56652685 Msa0127420:CDS
AATGGTGGCAGGCACGGCCG+TGG 0.520777 1_3:+56656988 Msa0127420:CDS
CAGAAAGAAAAGCAGGAGGT+TGG 0.520924 1_3:-56654019 None:intergenic
GTTGGGGTTAATATTGGCTA+TGG 0.521239 1_3:+56652670 Msa0127420:CDS
GAAATGAACTTGAAAGAAGA+AGG 0.522169 1_3:-56650631 None:intergenic
TTAGAGCATGAACATAGGTA+TGG 0.523088 1_3:-56652160 None:intergenic
GGGAAAGTCTCAGTTCCATC+TGG 0.523092 1_3:+56654113 Msa0127420:CDS
TGCCCACCCAACTGAGGCAC+AGG 0.523609 1_3:-56652640 None:intergenic
CACCGTGGCCCTACAGCCAT+CGG 0.523773 1_3:-56652694 None:intergenic
GACAACAATGGTGGCAGGCA+CGG 0.526103 1_3:+56656982 Msa0127420:CDS
ATCCTGTGCCTCAGTTGGGT+GGG 0.527851 1_3:+56652638 Msa0127420:CDS
TGAGGTTGAAATAAGACAGA+AGG 0.528495 1_3:+56654784 Msa0127420:CDS
ATCACCAAGCAGCGGAAACC+TGG 0.529348 1_3:+56652807 Msa0127420:CDS
TCCGTCGCTGCTTCTATCTC+CGG 0.530686 1_3:+56650700 Msa0127420:CDS
CTCTGATGGTATAGCTACAA+AGG 0.532244 1_3:+56657675 Msa0127420:CDS
TATACCATCAGAGAAATTTG+AGG 0.532633 1_3:-56657665 None:intergenic
GCCTCTCCCTGCAAAAGCAG+AGG 0.532861 1_3:+56651974 Msa0127420:CDS
ACAGGGGAACTGGATCCATC+AGG 0.534199 1_3:-56652934 None:intergenic
AGTTCTTAAGATACACAATC+AGG 0.535021 1_3:+56653899 Msa0127420:CDS
TTGTGGAAATGATCAAGGAC+GGG 0.536944 1_3:-56654815 None:intergenic
CCTGGTAGCCCGATATGCTA+TGG 0.538012 1_3:+56652825 Msa0127420:CDS
AAATCTTCTTCTTGTATCTG+TGG 0.538300 1_3:-56654320 None:intergenic
CTGTATCACCGAATTCAGGC+TGG 0.539993 1_3:+56652953 Msa0127420:CDS
TTCAAACGTGTACTCCTACT+CGG 0.540235 1_3:+56651852 Msa0127420:CDS
AGAGGATATTCCTGTTAATG+AGG 0.541213 1_3:+56654766 Msa0127420:CDS
TCAGCAGTTTCCAGTCCACC+AGG 0.541618 1_3:-56654431 None:intergenic
CTTTAGAGTTTATAGAGTGG+AGG 0.541673 1_3:+56658472 Msa0127420:intron
GATGTTGATGGGCTGACAGC+AGG 0.541983 1_3:-56652787 None:intergenic
CTGCCAAATTGGTATCCTCC+CGG 0.543872 1_3:-56654561 None:intergenic
TTTCTTTAGAGTTTATAGAG+TGG 0.546871 1_3:+56658469 Msa0127420:intron
GAAAAGCAGGAGGTTGGGGT+GGG 0.546994 1_3:-56654013 None:intergenic
TAACAACAATGGGTTGTTGG+AGG 0.547432 1_3:-56652728 None:intergenic
CGACATTATCGAAAATGTGT+GGG 0.547590 1_3:+56650258 Msa0127420:five_prime_UTR
CGCGACTCTCGTCGTCGGCA+GGG 0.547704 1_3:+56650508 Msa0127420:five_prime_UTR
AGCCTGAATTCGGTGATACA+GGG 0.548808 1_3:-56652951 None:intergenic
GCTATGGTCCGATGGCTGTA+GGG 0.549410 1_3:+56652686 Msa0127420:CDS
ATATTTGACTTCTCCGAGGA+AGG 0.549457 1_3:+56657955 Msa0127420:CDS
TCAGTTGGGTGGGCAAGGAA+CGG 0.549864 1_3:+56652648 Msa0127420:CDS
TCTTCTTGTATCTGTGGTGA+AGG 0.550396 1_3:-56654314 None:intergenic
AGAAACAGATGCGGCTGGAG+TGG 0.550843 1_3:+56653005 Msa0127420:CDS
GCAAAAGCAGAGGGCTGTGA+AGG 0.551367 1_3:+56651984 Msa0127420:CDS
AATATGACAAGTTCCCTTGG+AGG 0.552210 1_3:-56653847 None:intergenic
CGGAATTCCCGGTCACTCAC+CGG 0.552380 1_3:+56650532 Msa0127420:five_prime_UTR
CTGTTAGATTCTACTCACTA+AGG 0.552645 1_3:+56652135 Msa0127420:CDS
CGCAGATATAGGACTAGTAT+GGG 0.554454 1_3:-56653335 None:intergenic
GTGGATTGTAGCAGTCCCTC+TGG 0.554454 1_3:+56657883 Msa0127420:CDS
TATCAAGATCTAATGCCTGA+TGG 0.555177 1_3:+56652919 Msa0127420:CDS
TTCCTACTCAAAGAAAGGAT+CGG 0.557533 1_3:+56653438 Msa0127420:CDS
GCTGCTTCTATCTCCGGCGA+TGG 0.557714 1_3:+56650706 Msa0127420:CDS
GGGCTGACAGCAGGAGGAGT+CGG 0.558059 1_3:-56652778 None:intergenic
GGAGCCTCAAATTTCTCTGA+TGG 0.559075 1_3:+56657661 Msa0127420:CDS
TTCGGTTATTTGAGTTGTGG+TGG 0.562449 1_3:-56650405 None:intergenic
CCTCTCCCTGCAAAAGCAGA+GGG 0.565243 1_3:+56651975 Msa0127420:CDS
CATGCAACAACCAAGAGTAA+AGG 0.565496 1_3:-56652023 None:intergenic
CAGAGGTGCATATAAACTCC+GGG 0.565872 1_3:+56654543 Msa0127420:CDS
TCTACAGAAACAGATGCGGC+TGG 0.565883 1_3:+56653000 Msa0127420:CDS
TGCTACCTGATCTTTACGAT+CGG 0.565956 1_3:-56650731 None:intergenic
GGAGTGAACCACCATGGTAG+AGG 0.566226 1_3:-56653954 None:intergenic
ACGACGGAGTTGGCCGTGCA+CGG 0.566507 1_3:-56650449 None:intergenic
AATTTGACCTTTAACGAAGA+CGG 0.566522 1_3:-56650374 None:intergenic
GGCACGGCCGTGGTAGATGG+TGG 0.571144 1_3:+56656998 Msa0127420:CDS
GGTTGCCGTCATTTCCTCCA+AGG 0.572748 1_3:+56653833 Msa0127420:CDS
CTAACCACAGAAAGAAAAGC+AGG 0.573795 1_3:-56654026 None:intergenic
GCCACCACCGGTGAGTGACC+GGG 0.574100 1_3:-56650539 None:intergenic
CATTTCGTCTTGCATTAAGA+CGG 0.575776 1_3:+56650648 Msa0127420:CDS
GATCCTTTCTTTGAGTAGGA+AGG 0.577226 1_3:-56653436 None:intergenic
ATCAGATTTCTCCCTGCCAG+AGG 0.577582 1_3:-56657899 None:intergenic
ATCGTGTAGATGAAGAAGCA+AGG 0.578102 1_3:+56650571 Msa0127420:exon
AACTGTCTCACCACCAAAAG+GGG 0.579524 1_3:-56653880 None:intergenic
GCAGAGGTGCATATAAACTC+CGG 0.580890 1_3:+56654542 Msa0127420:CDS
ACTAACCGTATTAAGCCATC+CGG 0.582236 1_3:-56654069 None:intergenic
TGCCACGGTGGAGCTTGTAA+AGG 0.583238 1_3:-56653498 None:intergenic
GTGTTCGGTTATTTGAGTTG+TGG 0.585857 1_3:-56650408 None:intergenic
AACAACGTTTCCAAGAGCAA+TGG 0.586174 1_3:+56650601 Msa0127420:CDS
CTGTTACCTGTCACCCCAAG+TGG 0.588510 1_3:-56654846 None:intergenic
TAATATTGGCTATGGTCCGA+TGG 0.588529 1_3:+56652678 Msa0127420:CDS
AGTCGCGGAACGCAGTCGAT+CGG 0.589122 1_3:-56650492 None:intergenic
TCAGATTTCTCCCTGCCAGA+GGG 0.589490 1_3:-56657898 None:intergenic
TACTGAATTAAGTGACCAGA+AGG 0.590764 1_3:-56654230 None:intergenic
AGCAGAAGTTACTACTGATG+TGG 0.591016 1_3:+56657864 Msa0127420:CDS
TTTCAGCCTGAGCTTCGTTG+TGG 0.591381 1_3:-56652091 None:intergenic
GGAGATAGAAGCAGCGACGG+AGG 0.591766 1_3:-56650698 None:intergenic
TAGAGCATGAACATAGGTAT+GGG 0.591981 1_3:-56652159 None:intergenic
TTTGTGGAAATGATCAAGGA+CGG 0.594219 1_3:-56654816 None:intergenic
GGTCAGACAACAATGGTGGC+AGG 0.594877 1_3:+56656977 Msa0127420:CDS
CAGTCCTCAAATAGTCGCTG+TGG 0.595369 1_3:+56652214 Msa0127420:CDS
ATAAACCAGCAAGTGTTCCA+TGG 0.597706 1_3:-56654204 None:intergenic
TGAAAGTGGAACCTGTTCAA+TGG 0.597917 1_3:+56654348 Msa0127420:CDS
TCGTGTAGATGAAGAAGCAA+GGG 0.597937 1_3:+56650572 Msa0127420:exon
GTTGCCGTCATTTCCTCCAA+GGG 0.598398 1_3:+56653834 Msa0127420:CDS
ACGACATTATCGAAAATGTG+TGG 0.601636 1_3:+56650257 Msa0127420:five_prime_UTR
TTGTAGCAGTCCCTCTGGCA+GGG 0.602924 1_3:+56657888 Msa0127420:CDS
ACAGCAGAAACAGCACCAGA+TGG 0.603039 1_3:-56654128 None:intergenic
AGTTCCCTTGGAGGAAATGA+CGG 0.606767 1_3:-56653838 None:intergenic
TCTATATCAGGGAGTACACC+TGG 0.607738 1_3:+56654413 Msa0127420:CDS
AACACAAATGAGGTTTCAGT+AGG 0.608382 1_3:+56657640 Msa0127420:intron
GATGTTATTACCATGAATTG+AGG 0.608809 1_3:-56653395 None:intergenic
ATGTTTCATCTTCTGCAGCA+GGG 0.610620 1_3:+56654093 Msa0127420:CDS
ACAGTGCAAAATGTCAGAGA+TGG 0.618661 1_3:+56652068 Msa0127420:CDS
GAATCTTAGAGCATGAACAT+AGG 0.620118 1_3:-56652165 None:intergenic
GGTGATAATGATGACATGCT+TGG 0.621093 1_3:+56657928 Msa0127420:CDS
GTTAGGTGGCAGCATACAGT+GGG 0.621890 1_3:+56656952 Msa0127420:CDS
ACCAATTTGGCAGAAATCTG+AGG 0.621938 1_3:+56654571 Msa0127420:CDS
GGAAGATGCCTCTAATATCA+GGG 0.623650 1_3:+56651905 Msa0127420:CDS
TGTTAGGTGGCAGCATACAG+TGG 0.627154 1_3:+56656951 Msa0127420:CDS
GCCGGAGATAGAAGCAGCGA+CGG 0.627399 1_3:-56650701 None:intergenic
TCTCACCACCAAAAGGGGAA+AGG 0.628650 1_3:-56653875 None:intergenic
ACCCGATCCTTTCTTTGAGT+AGG 0.631333 1_3:-56653440 None:intergenic
AGGGAGAAATCTGATGAAGA+TGG 0.631588 1_3:+56657907 Msa0127420:CDS
GGTGGCAGCATACAGTGGGT+GGG 0.632460 1_3:+56656956 Msa0127420:CDS
TAACCATGTAGACAGTTGAA+CGG 0.635643 1_3:-56652187 None:intergenic
AAGTGGAACCTGTTCAATGG+TGG 0.635842 1_3:+56654351 Msa0127420:CDS
ATGTCTGTAGAAGATATGAT+TGG 0.636891 1_3:+56654375 Msa0127420:CDS
GCCGGCAGTACGGACGCCGG+AGG 0.637486 1_3:-56650674 None:intergenic
CCTGCCGACGACGAGAGTCG+CGG 0.638796 1_3:-56650507 None:intergenic
ATACACAATCAGGACACAGA+AGG 0.639988 1_3:+56653909 Msa0127420:CDS
GTTCCTTGCCCACCCAACTG+AGG 0.642014 1_3:-56652646 None:intergenic
AAGCCAGGTACAGTTAACTT+CGG 0.644189 1_3:-56655841 None:intergenic
AGTCCTCAAATAGTCGCTGT+GGG 0.644493 1_3:+56652215 Msa0127420:CDS
TGCTGGTTTACAGTAAAATG+TGG 0.645882 1_3:-56653975 None:intergenic
AGGTACAGTTAACTTCGGAT+GGG 0.646044 1_3:-56655836 None:intergenic
TGGATTTCAAGTTCTCGATG+TGG 0.646580 1_3:+56651884 Msa0127420:CDS
TGTGATAAATCAAAGATACC+TGG 0.646678 1_3:+56652044 Msa0127420:CDS
ACCAAAGCATAGCAGAATCG+CGG 0.648729 1_3:+56650322 Msa0127420:five_prime_UTR
GGCGCCGGCAGTACGGACGC+CGG 0.656417 1_3:-56650677 None:intergenic
GCCTGAATTCGGTGATACAG+GGG 0.657469 1_3:-56652950 None:intergenic
TTGTCACGTCTCAAATGCAG+AGG 0.660933 1_3:+56654526 Msa0127420:CDS
ATCCATTGGAATAACCGAGT+AGG 0.661164 1_3:-56651866 None:intergenic
AATTCCCGGTCACTCACCGG+TGG 0.662119 1_3:+56650535 Msa0127420:five_prime_UTR
TGCATAAGAGTTGAAGACGA+CGG 0.663554 1_3:-56650465 None:intergenic
CGATGGCTGTAGGGCCACGG+TGG 0.664390 1_3:+56652695 Msa0127420:CDS
AGTGGAACCTGTTCAATGGT+GGG 0.666683 1_3:+56654352 Msa0127420:CDS
AAGGTTAAATCATCAGAACA+TGG 0.666854 1_3:+56657694 Msa0127420:CDS
CGTTCCGCGACTCTCGTCGT+CGG 0.667415 1_3:+56650503 Msa0127420:five_prime_UTR
TATGCATTGTGCGAATCAGG+AGG 0.673488 1_3:-56654167 None:intergenic
GACATTATCGAAAATGTGTG+GGG 0.676520 1_3:+56650259 Msa0127420:five_prime_UTR
GTTGCTGCCACCATCTACCA+CGG 0.678399 1_3:-56657005 None:intergenic
CCATCAACATCACCAAGCAG+CGG 0.680372 1_3:+56652799 Msa0127420:CDS
ATACGCAAAAGTTCATGCCA+TGG 0.683570 1_3:+56654187 Msa0127420:CDS
GTGGGTGGGTCAGACAACAA+TGG 0.690872 1_3:+56656970 Msa0127420:CDS
AAATGTGGAGTGAACCACCA+TGG 0.691383 1_3:-56653960 None:intergenic
ACGGAGTTGGCCGTGCACGG+CGG 0.691410 1_3:-56650446 None:intergenic
AAATTCTACAGAAACAGATG+CGG 0.692764 1_3:+56652996 Msa0127420:CDS
ATACTGCGGATGTCATGCCA+CGG 0.696634 1_3:-56653513 None:intergenic
GAATATGCATGTTACTTGTG+AGG 0.697394 1_3:+56657762 Msa0127420:CDS
GGTGGGTCAGACAACAATGG+TGG 0.697534 1_3:+56656973 Msa0127420:CDS
CTGCGGATGTCATGCCACGG+TGG 0.707398 1_3:-56653510 None:intergenic
ACCACAGAAAGAAAAGCAGG+AGG 0.715286 1_3:-56654023 None:intergenic
TGATATATTTGACTTCTCCG+AGG 0.718503 1_3:+56657951 Msa0127420:CDS
GTTGATGGGCTGACAGCAGG+AGG 0.724183 1_3:-56652784 None:intergenic
CACCTTTACAAGCTCCACCG+TGG 0.728912 1_3:+56653496 Msa0127420:CDS
AGGTGCATATAAACTCCGGG+AGG 0.742328 1_3:+56654546 Msa0127420:CDS
ATATCAGGGAGTACACCTGG+TGG 0.756042 1_3:+56654416 Msa0127420:CDS
GAGGCATAAGCTAACCACCG+TGG 0.793825 1_3:-56652709 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTAATTTAGGTTAATTT+TGG + chr1_3:56650998-56651017 Msa0127420:intron 10.0%
!! AATAAATTAGAATATTTGTT+TGG + chr1_3:56651085-56651104 Msa0127420:intron 10.0%
!!! CATTAATTTTAATTTTCAAA+GGG - chr1_3:56656255-56656274 None:intergenic 10.0%
!!! TTTTTTTTTAAAGAAATGTT+AGG + chr1_3:56656935-56656954 Msa0127420:intron 10.0%
!! TGAATCTAAATAAAATTAAA+AGG - chr1_3:56658001-56658020 None:intergenic 10.0%
!! AAATGTGTATAAAAATAAAA+AGG + chr1_3:56658073-56658092 Msa0127420:intron 10.0%
!!! TGTTTGAATATTTTAAATGA+GGG - chr1_3:56652400-56652419 None:intergenic 15.0%
!!! ATGTTTGAATATTTTAAATG+AGG - chr1_3:56652401-56652420 None:intergenic 15.0%
!! TTCTTTCTTAAAAGTAATAT+TGG + chr1_3:56653108-56653127 Msa0127420:intron 15.0%
!! TTTGCAATTATAGAAAAATA+AGG - chr1_3:56653745-56653764 None:intergenic 15.0%
!!! TTATTTTTCTATAATTGCAA+AGG + chr1_3:56653744-56653763 Msa0127420:intron 15.0%
!!! ATAATTTTCATTCTAAACAT+GGG + chr1_3:56654931-56654950 Msa0127420:intron 15.0%
!!! TTTTTTTGTCATTAAAAACA+TGG + chr1_3:56655142-56655161 Msa0127420:intron 15.0%
!! AAAACATAAAATTGAATGTT+AGG + chr1_3:56655409-56655428 Msa0127420:intron 15.0%
!! AAGATAATAATTAAGTAACA+TGG + chr1_3:56656101-56656120 Msa0127420:intron 15.0%
!!! GCATTAATTTTAATTTTCAA+AGG - chr1_3:56656256-56656275 None:intergenic 15.0%
!! TCTAAATAAATAGAAAAATC+AGG + chr1_3:56657284-56657303 Msa0127420:intron 15.0%
!!! CAAACATTTTGTAATTTTAA+GGG - chr1_3:56658153-56658172 None:intergenic 15.0%
!!! ACAAACATTTTGTAATTTTA+AGG - chr1_3:56658154-56658173 None:intergenic 15.0%
!!! AAGTTTGAAAATATTTTGAG+AGG + chr1_3:56650228-56650247 Msa0127420:five_prime_UTR 20.0%
!!! GTCTAAAATAATAAGAAGTA+TGG - chr1_3:56651417-56651436 None:intergenic 20.0%
!! ACGTAAGTTATTTAAAAAGT+TGG + chr1_3:56651507-56651526 Msa0127420:intron 20.0%
!! TAAGTTATTTAAAAAGTTGG+TGG + chr1_3:56651510-56651529 Msa0127420:intron 20.0%
!! AGATAACATCGAAAAAATAT+AGG - chr1_3:56652296-56652315 None:intergenic 20.0%
!! TATAATTGTTCAGTAAACAT+TGG + chr1_3:56652334-56652353 Msa0127420:intron 20.0%
!! TAAAAATCAAAACAACAAAC+TGG - chr1_3:56652554-56652573 None:intergenic 20.0%
!!! CTTTTAAGAAAGAAAATATC+TGG - chr1_3:56653102-56653121 None:intergenic 20.0%
!! TGGAAAATAATCATTCTATA+TGG + chr1_3:56653228-56653247 Msa0127420:intron 20.0%
!! AATTTAAGCTATAAACATGA+AGG - chr1_3:56653564-56653583 None:intergenic 20.0%
!! TTAAATGATGGTATAAAGAA+CGG + chr1_3:56653703-56653722 Msa0127420:intron 20.0%
!! AGAATAAAAAATGTTAATGC+CGG + chr1_3:56654050-56654069 Msa0127420:CDS 20.0%
!! AATTGTGAAAATTATAGTGT+TGG + chr1_3:56654473-56654492 Msa0127420:CDS 20.0%
!! ATTGTGAAAATTATAGTGTT+GGG + chr1_3:56654474-56654493 Msa0127420:CDS 20.0%
!!! GATAATTTTCATTCTAAACA+TGG + chr1_3:56654930-56654949 Msa0127420:intron 20.0%
!!! TGTGTTTAGGATTAATTTTT+AGG + chr1_3:56655023-56655042 Msa0127420:intron 20.0%
!!! TAAAAACATGGATCTTATTT+AGG + chr1_3:56655154-56655173 Msa0127420:intron 20.0%
!! AATAAAAGAAAATAGTTCCT+TGG - chr1_3:56655257-56655276 None:intergenic 20.0%
!! TAAATCATGTAAAAGTAAGA+TGG - chr1_3:56655297-56655316 None:intergenic 20.0%
!!! TTCTTAAATTTTCATCATGA+GGG - chr1_3:56655683-56655702 None:intergenic 20.0%
!! AATATAACTGCTGAAATTAT+GGG + chr1_3:56655934-56655953 Msa0127420:intron 20.0%
!! AATGAATAAAGACTAGAATA+TGG + chr1_3:56655979-56655998 Msa0127420:intron 20.0%
!!! TTAGTATTCTTTAACTTTAG+GGG - chr1_3:56656377-56656396 None:intergenic 20.0%
!!! CTTAGTATTCTTTAACTTTA+GGG - chr1_3:56656378-56656397 None:intergenic 20.0%
!!! TTAGTATTCTTTAACTTTAC+GGG - chr1_3:56656504-56656523 None:intergenic 20.0%
!!! CTTAGTATTCTTTAACTTTA+CGG - chr1_3:56656378-56656397 None:intergenic 20.0%
!! AAACCAAACATAAATGATAT+TGG + chr1_3:56656666-56656685 Msa0127420:intron 20.0%
!! TCACTTCAAAAAATCATAAT+TGG + chr1_3:56656870-56656889 Msa0127420:intron 20.0%
!!! TTTTTTAAAGAAATGTTAGG+TGG + chr1_3:56656938-56656957 Msa0127420:intron 20.0%
!! TAAAACCTAAAACTTCAATA+TGG - chr1_3:56657154-56657173 None:intergenic 20.0%
!! AGAAAGAGATAAATAATAAG+AGG + chr1_3:56657180-56657199 Msa0127420:intron 20.0%
!! GAAAGAGATAAATAATAAGA+GGG + chr1_3:56657181-56657200 Msa0127420:intron 20.0%
!!! AATTTCAATTCAAGTTTTAG+TGG + chr1_3:56657730-56657749 Msa0127420:CDS 20.0%
!!! TATGATCAATTTTTTCAAGA+GGG + chr1_3:56657808-56657827 Msa0127420:CDS 20.0%
!! TCATTTACAAGAAAATTAGA+AGG - chr1_3:56658368-56658387 None:intergenic 20.0%
!!! GTTTTCGTTAATTGTCATTT+AGG - chr1_3:56650286-56650305 None:intergenic 25.0%
! TATTGTTAATCAGAAACAAG+TGG - chr1_3:56651051-56651070 None:intergenic 25.0%
! ATTGCTATAAGTCTCATAAT+TGG + chr1_3:56651391-56651410 Msa0127420:intron 25.0%
!! ATTTCCTTTTGCAATATTTC+TGG + chr1_3:56653068-56653087 Msa0127420:intron 25.0%
! ATTTACATGAGATCATCTAT+TGG + chr1_3:56653144-56653163 Msa0127420:intron 25.0%
! CTTAAAAAATCCTTCTTCTA+TGG - chr1_3:56653180-56653199 None:intergenic 25.0%
!!! CATAGAAGAAGGATTTTTTA+AGG + chr1_3:56653178-56653197 Msa0127420:intron 25.0%
!!! TACTGTTACTAATTTTTTGC+AGG + chr1_3:56653264-56653283 Msa0127420:intron 25.0%
! TAAATGATGGTATAAAGAAC+GGG + chr1_3:56653704-56653723 Msa0127420:intron 25.0%
! AAAAAGAGGTTTCTATATCA+GGG + chr1_3:56654402-56654421 Msa0127420:CDS 25.0%
!! ACAATCCTGATTAAGTTTTA+CGG - chr1_3:56654510-56654529 None:intergenic 25.0%
!! CTATTTCCTTCTCAATTTTT+AGG + chr1_3:56654664-56654683 Msa0127420:intron 25.0%
!! AAATGTGAACTTTTAACCAA+TGG + chr1_3:56654731-56654750 Msa0127420:CDS 25.0%
!! AATGTGAACTTTTAACCAAT+GGG + chr1_3:56654732-56654751 Msa0127420:CDS 25.0%
! TTAATATAAAACTTTCCCAG+TGG - chr1_3:56654899-56654918 None:intergenic 25.0%
! TAGAATGAAAATTATCTGAG+TGG - chr1_3:56654926-56654945 None:intergenic 25.0%
!! AGTTCTCAAAATTTTTGTAG+TGG + chr1_3:56654974-56654993 Msa0127420:intron 25.0%
! TTTGTAGTGGTGAATATATT+CGG + chr1_3:56654987-56655006 Msa0127420:intron 25.0%
!! ATTTCAACTAAAAAGTGCAA+AGG - chr1_3:56655073-56655092 None:intergenic 25.0%
!!! TGCACTTTTTAGTTGAAATA+TGG + chr1_3:56655074-56655093 Msa0127420:intron 25.0%
! AAGGAAAAGTGAATCTTTAA+AGG - chr1_3:56655556-56655575 None:intergenic 25.0%
!! TTTTATTGAGCAATAAACAG+AGG - chr1_3:56655582-56655601 None:intergenic 25.0%
! TTGCTCAATAAAATTTAGAC+TGG + chr1_3:56655589-56655608 Msa0127420:intron 25.0%
! TGCTCAATAAAATTTAGACT+GGG + chr1_3:56655590-56655609 Msa0127420:intron 25.0%
!!! ATTTTTCAGGAACCATATTT+TGG + chr1_3:56655617-56655636 Msa0127420:intron 25.0%
!! GTTCTTAAATTTTCATCATG+AGG - chr1_3:56655684-56655703 None:intergenic 25.0%
!! GTAGAACATTTTCAATGAAT+TGG - chr1_3:56655721-56655740 None:intergenic 25.0%
! ATAATAAAAGCTTTCACACT+GGG - chr1_3:56655900-56655919 None:intergenic 25.0%
! TATAATAAAAGCTTTCACAC+TGG - chr1_3:56655901-56655920 None:intergenic 25.0%
! CAATATAACTGCTGAAATTA+TGG + chr1_3:56655933-56655952 Msa0127420:intron 25.0%
! ATATAACTGCTGAAATTATG+GGG + chr1_3:56655935-56655954 Msa0127420:intron 25.0%
!! ATATGTTTTCCTATTCAATC+AGG - chr1_3:56656080-56656099 None:intergenic 25.0%
!! GCTTAGTATTCTTTAACTTT+AGG - chr1_3:56656379-56656398 None:intergenic 25.0%
! AACATGTCAAATAACAACTT+GGG + chr1_3:56656764-56656783 Msa0127420:intron 25.0%
!! AGATACCATATTGAAGTTTT+AGG + chr1_3:56657146-56657165 Msa0127420:intron 25.0%
!!! GATAATAAACTGATTTTACG+AGG + chr1_3:56657376-56657395 Msa0127420:intron 25.0%
! ATTTGAATGTAAGAACAAAG+AGG + chr1_3:56657568-56657587 Msa0127420:intron 25.0%
! AAACTGTTATAACACAAATG+AGG + chr1_3:56657630-56657649 Msa0127420:intron 25.0%
! TGAAAAAATTGATCATAGTC+TGG - chr1_3:56657805-56657824 None:intergenic 25.0%
!!! CTATGATCAATTTTTTCAAG+AGG + chr1_3:56657807-56657826 Msa0127420:CDS 25.0%
! GGAATTTAATTAACAAATGC+AGG + chr1_3:56658247-56658266 Msa0127420:intron 25.0%
! CATTAAATTCCTTGAATCAA+TGG - chr1_3:56658305-56658324 None:intergenic 25.0%
! ATAACTACAGATTATTTGTG+TGG + chr1_3:56658403-56658422 Msa0127420:intron 25.0%
!!! TTTCTTTAGAGTTTATAGAG+TGG + chr1_3:56658469-56658488 Msa0127420:intron 25.0%
!!! TGTGATGATTTTGAGTTTTG+AGG - chr1_3:56650353-56650372 None:intergenic 30.0%
AATTTGACCTTTAACGAAGA+CGG - chr1_3:56650377-56650396 None:intergenic 30.0%
! TCATCTACACGATTTTCTAA+AGG - chr1_3:56650564-56650583 None:intergenic 30.0%
GAAATGAACTTGAAAGAAGA+AGG - chr1_3:56650634-56650653 None:intergenic 30.0%
!! GATGATGGAATAGTTAAACA+AGG + chr1_3:56651150-56651169 Msa0127420:intron 30.0%
AGTAAAGTAAGCAATCTCTA+AGG + chr1_3:56651192-56651211 Msa0127420:intron 30.0%
TAATATTACTTGCACTTGTG+TGG + chr1_3:56651235-56651254 Msa0127420:intron 30.0%
!! AAAGTTGGTGGATAAATCAA+AGG + chr1_3:56651522-56651541 Msa0127420:intron 30.0%
!! AAGTTGGTGGATAAATCAAA+GGG + chr1_3:56651523-56651542 Msa0127420:intron 30.0%
!! CTCTTAAGAAGCATTGATTA+TGG + chr1_3:56651646-56651665 Msa0127420:intron 30.0%
GTGAAGTTATTTATGAACTG+AGG + chr1_3:56651748-56651767 Msa0127420:intron 30.0%
TGTGATAAATCAAAGATACC+TGG + chr1_3:56652044-56652063 Msa0127420:CDS 30.0%
TGTTCAGTAAACATTGGTAT+TGG + chr1_3:56652340-56652359 Msa0127420:intron 30.0%
TTATTGACGTAACTTATACC+TGG + chr1_3:56652528-56652547 Msa0127420:intron 30.0%
GACTTGTGTTTAACAACAAT+GGG - chr1_3:56652741-56652760 None:intergenic 30.0%
CTGATCAATCTTAGTGATAT+GGG + chr1_3:56652874-56652893 Msa0127420:CDS 30.0%
AAATTCTACAGAAACAGATG+CGG + chr1_3:56652996-56653015 Msa0127420:CDS 30.0%
TAGATGATAGTTTATGTCAG+TGG + chr1_3:56653201-56653220 Msa0127420:intron 30.0%
GATGTTATTACCATGAATTG+AGG - chr1_3:56653398-56653417 None:intergenic 30.0%
TTCAAGACATCATTAGATGA+TGG - chr1_3:56653604-56653623 None:intergenic 30.0%
TTGTTGGTCAAACTTCTTTA+TGG + chr1_3:56653664-56653683 Msa0127420:intron 30.0%
GTCAAACTTCTTTATGGATT+TGG + chr1_3:56653670-56653689 Msa0127420:intron 30.0%
GGCAAGATATGTTTAAATGA+TGG + chr1_3:56653691-56653710 Msa0127420:intron 30.0%
CTCAATCATGTATGTTATAC+AGG + chr1_3:56653773-56653792 Msa0127420:intron 30.0%
! TTTTAGTCATTACAGTCAGT+GGG + chr1_3:56653812-56653831 Msa0127420:CDS 30.0%
AAAAATATGACAAGTTCCCT+TGG - chr1_3:56653853-56653872 None:intergenic 30.0%
AGTTCTTAAGATACACAATC+AGG + chr1_3:56653899-56653918 Msa0127420:CDS 30.0%
TAAAAAATGTTAATGCCGGA+TGG + chr1_3:56654054-56654073 Msa0127420:CDS 30.0%
AAATCTTCTTCTTGTATCTG+TGG - chr1_3:56654323-56654342 None:intergenic 30.0%
ATGTCTGTAGAAGATATGAT+TGG + chr1_3:56654375-56654394 Msa0127420:CDS 30.0%
ATATGATTGGCAAGAAAAAG+AGG + chr1_3:56654388-56654407 Msa0127420:CDS 30.0%
GAAAAAGAGGTTTCTATATC+AGG + chr1_3:56654401-56654420 Msa0127420:CDS 30.0%
TGATTCCGTAAAACTTAATC+AGG + chr1_3:56654502-56654521 Msa0127420:CDS 30.0%
GAACATAATAATGTCGAGAA+AGG - chr1_3:56654633-56654652 None:intergenic 30.0%
AAGACACCTAAAAATTGAGA+AGG - chr1_3:56654673-56654692 None:intergenic 30.0%
! ATGTGAACTTTTAACCAATG+GGG + chr1_3:56654733-56654752 Msa0127420:CDS 30.0%
CTTATTTCAACCTCATTAAC+AGG - chr1_3:56654779-56654798 None:intergenic 30.0%
! GAATTTTGTGGAAATGATCA+AGG - chr1_3:56654823-56654842 None:intergenic 30.0%
CAAAAACAAAAAGGCAGATA+AGG - chr1_3:56654874-56654893 None:intergenic 30.0%
!!! CTTATCTGCCTTTTTGTTTT+TGG + chr1_3:56654872-56654891 Msa0127420:intron 30.0%
!! GATTAATTTTTAGGAGCACA+TGG + chr1_3:56655032-56655051 Msa0127420:intron 30.0%
AAAAGAAGTCAAGTGTAAAC+TGG - chr1_3:56655104-56655123 None:intergenic 30.0%
AAAGTAAGATGGAAATGCAT+AGG - chr1_3:56655286-56655305 None:intergenic 30.0%
!! TGAATGTTAGGTTGATAACA+CGG + chr1_3:56655421-56655440 Msa0127420:intron 30.0%
AATGAACGAGAACCAAAATA+TGG - chr1_3:56655632-56655651 None:intergenic 30.0%
!! CTCGTTCATTTAATTTTGCA+AGG + chr1_3:56655642-56655661 Msa0127420:intron 30.0%
TGTTCTACAATAATTGTCAG+AGG + chr1_3:56655733-56655752 Msa0127420:intron 30.0%
TTTGTGGGAAAAACATATGT+TGG + chr1_3:56655862-56655881 Msa0127420:CDS 30.0%
TTTCCTATTCAATCAGGATT+AGG - chr1_3:56656074-56656093 None:intergenic 30.0%
GAACATGTCAAATAACAACT+TGG + chr1_3:56656763-56656782 Msa0127420:intron 30.0%
AAAAAAAATGTGCGCAAAAC+CGG + chr1_3:56656788-56656807 Msa0127420:intron 30.0%
GAATAATATGAGACTTGACA+CGG + chr1_3:56657106-56657125 Msa0127420:intron 30.0%
! AGAGGTAGTTGTAGTTATTT+TGG + chr1_3:56657586-56657605 Msa0127420:intron 30.0%
TTTGTGTTATAACAGTTTCC+AGG - chr1_3:56657628-56657647 None:intergenic 30.0%
TATACCATCAGAGAAATTTG+AGG - chr1_3:56657668-56657687 None:intergenic 30.0%
AAGGTTAAATCATCAGAACA+TGG + chr1_3:56657694-56657713 Msa0127420:CDS 30.0%
TTACAAAATGTTTGTGTTGC+AGG + chr1_3:56658159-56658178 Msa0127420:intron 30.0%
TTTACAACAATTCGAAGAGA+GGG - chr1_3:56658214-56658233 None:intergenic 30.0%
ATTTACAACAATTCGAAGAG+AGG - chr1_3:56658215-56658234 None:intergenic 30.0%
CTCTTCGAATTGTTGTAAAT+TGG + chr1_3:56658215-56658234 Msa0127420:intron 30.0%
TTCGAATTGTTGTAAATTGG+TGG + chr1_3:56658218-56658237 Msa0127420:intron 30.0%
AACGAGCAATTTCATAATCT+TGG - chr1_3:56658509-56658528 None:intergenic 30.0%
ACGACATTATCGAAAATGTG+TGG + chr1_3:56650257-56650276 Msa0127420:five_prime_UTR 35.0%
CGACATTATCGAAAATGTGT+GGG + chr1_3:56650258-56650277 Msa0127420:five_prime_UTR 35.0%
GACATTATCGAAAATGTGTG+GGG + chr1_3:56650259-56650278 Msa0127420:five_prime_UTR 35.0%
CATTTCGTCTTGCATTAAGA+CGG + chr1_3:56650648-56650667 Msa0127420:CDS 35.0%
!! AGCGAAAACTTGCTAAATCT+AGG + chr1_3:56650867-56650886 Msa0127420:intron 35.0%
CATGAACAACGTTTCTACAA+AGG - chr1_3:56650923-56650942 None:intergenic 35.0%
TCGAGTATGGAAAAGCTATT+TGG + chr1_3:56651261-56651280 Msa0127420:intron 35.0%
AACCAGTCTCACATTAATTC+TGG - chr1_3:56651439-56651458 None:intergenic 35.0%
AATCAAAGGGTGAGATTAAG+TGG + chr1_3:56651536-56651555 Msa0127420:intron 35.0%
ACGTCATGTAATTGTCAATG+TGG + chr1_3:56651591-56651610 Msa0127420:intron 35.0%
!! GTTATAGAGTACTGCATATG+TGG + chr1_3:56651621-56651640 Msa0127420:intron 35.0%
!!! TTTTGTGCAATAGAGTACTG+TGG + chr1_3:56651726-56651745 Msa0127420:intron 35.0%
! ACATCTATCTTTTGTCAAGC+AGG + chr1_3:56651785-56651804 Msa0127420:intron 35.0%
ATCGAGAACTTGAAATCCAT+TGG - chr1_3:56651883-56651902 None:intergenic 35.0%
TGCATCTGTAAAAACGAAAC+TGG - chr1_3:56651954-56651973 None:intergenic 35.0%
CTGTTAGATTCTACTCACTA+AGG + chr1_3:56652135-56652154 Msa0127420:CDS 35.0%
TAGAGCATGAACATAGGTAT+GGG - chr1_3:56652162-56652181 None:intergenic 35.0%
TTAGAGCATGAACATAGGTA+TGG - chr1_3:56652163-56652182 None:intergenic 35.0%
GAATCTTAGAGCATGAACAT+AGG - chr1_3:56652168-56652187 None:intergenic 35.0%
TAACCATGTAGACAGTTGAA+CGG - chr1_3:56652190-56652209 None:intergenic 35.0%
GTTTACCAATTTCCTCCATT+GGG + chr1_3:56652362-56652381 Msa0127420:intron 35.0%
! GCTTAGTGTAACAAGTTTTC+AGG + chr1_3:56652423-56652442 Msa0127420:intron 35.0%
GAACATGTAAGTGATCCATT+TGG - chr1_3:56652468-56652487 None:intergenic 35.0%
AACTAAGACACTGTTCGTTA+TGG - chr1_3:56652506-56652525 None:intergenic 35.0%
!! GTTTAACAACAATGGGTTGT+TGG - chr1_3:56652734-56652753 None:intergenic 35.0%
CGACTTGTGTTTAACAACAA+TGG - chr1_3:56652742-56652761 None:intergenic 35.0%
TGCTAGATTCCATAGCATAT+CGG - chr1_3:56652837-56652856 None:intergenic 35.0%
TATGGAATCTAGCAAGCATT+TGG + chr1_3:56652843-56652862 Msa0127420:CDS 35.0%
GCTGATCAATCTTAGTGATA+TGG + chr1_3:56652873-56652892 Msa0127420:CDS 35.0%
TATCAAGATCTAATGCCTGA+TGG + chr1_3:56652919-56652938 Msa0127420:CDS 35.0%
CTGTCCAGAAATATTGCAAA+AGG - chr1_3:56653075-56653094 None:intergenic 35.0%
!!! TTTTTTGCAGGTTGTTGTCA+AGG + chr1_3:56653276-56653295 Msa0127420:intron 35.0%
!!! CAAGGATTTTGTTTCTAGAG+CGG + chr1_3:56653294-56653313 Msa0127420:CDS 35.0%
TCAAAACATAGCGCAGATAT+AGG - chr1_3:56653349-56653368 None:intergenic 35.0%
TTCCTACTCAAAGAAAGGAT+CGG + chr1_3:56653438-56653457 Msa0127420:CDS 35.0%
TGCTATTCTCCGTTTCTTTA+AGG + chr1_3:56653538-56653557 Msa0127420:intron 35.0%
ACATGAAGGCCTTAAAGAAA+CGG - chr1_3:56653550-56653569 None:intergenic 35.0%
AAAGTTAACCTTACCTTCCT+AGG + chr1_3:56653633-56653652 Msa0127420:intron 35.0%
!! GTTTTAGTCATTACAGTCAG+TGG + chr1_3:56653811-56653830 Msa0127420:CDS 35.0%
! ATTTTTGTCCTTTCCCCTTT+TGG + chr1_3:56653867-56653886 Msa0127420:CDS 35.0%
!! TGCTGGTTTACAGTAAAATG+TGG - chr1_3:56653978-56653997 None:intergenic 35.0%
TACTGAATTAAGTGACCAGA+AGG - chr1_3:56654233-56654252 None:intergenic 35.0%
TAACCTACTATCGTCATTGA+TGG + chr1_3:56654253-56654272 Msa0127420:CDS 35.0%
GTTCTTGAAGCAGTTTCATT+TGG - chr1_3:56654284-56654303 None:intergenic 35.0%
AGAAGATTTACGAGTGAAAG+TGG + chr1_3:56654334-56654353 Msa0127420:CDS 35.0%
GGAAACTGCTGAAATGATAT+TGG + chr1_3:56654442-56654461 Msa0127420:CDS 35.0%
TTAGGTGTCTTTCTTTGTGA+TGG + chr1_3:56654682-56654701 Msa0127420:intron 35.0%
TAGGTGTCTTTCTTTGTGAT+GGG + chr1_3:56654683-56654702 Msa0127420:intron 35.0%
AGAGGATATTCCTGTTAATG+AGG + chr1_3:56654766-56654785 Msa0127420:CDS 35.0%
TGAGGTTGAAATAAGACAGA+AGG + chr1_3:56654784-56654803 Msa0127420:CDS 35.0%
TTTGTGGAAATGATCAAGGA+CGG - chr1_3:56654819-56654838 None:intergenic 35.0%
!!! CTTTTTGTTTTTGGTCCACT+GGG + chr1_3:56654881-56654900 Msa0127420:intron 35.0%
AATCCTAAACACATACGAAG+AGG - chr1_3:56655016-56655035 None:intergenic 35.0%
! ACTTGACTTCTTTTGTTGCT+AGG + chr1_3:56655110-56655129 Msa0127420:intron 35.0%
! GATCTTATTTAGGCTCTACA+TGG + chr1_3:56655164-56655183 Msa0127420:intron 35.0%
! ATGGGAGTTTTACGTTGTTA+CGG + chr1_3:56655231-56655250 Msa0127420:intron 35.0%
TTCCACGAATACTAAATCCA+CGG - chr1_3:56655471-56655490 None:intergenic 35.0%
GTGTGTGTGTCTAATATGAA+TGG + chr1_3:56655505-56655524 Msa0127420:intron 35.0%
GAATGGTTTCTTAGTGTTAG+TGG + chr1_3:56655522-56655541 Msa0127420:intron 35.0%
!!! ATGGGGTTTTAGATAATGAG+AGG + chr1_3:56655952-56655971 Msa0127420:intron 35.0%
TAGCACTTACCCCTATTTAT+AGG + chr1_3:56656033-56656052 Msa0127420:intron 35.0%
AGCACTTACCCCTATTTATA+GGG + chr1_3:56656034-56656053 Msa0127420:intron 35.0%
TTACCCCTATTTATAGGGAT+GGG + chr1_3:56656039-56656058 Msa0127420:intron 35.0%
AGTACCCATCCCTATAAATA+GGG - chr1_3:56656046-56656065 None:intergenic 35.0%
ACTCCTAATCCTGATTGAAT+AGG + chr1_3:56656068-56656087 Msa0127420:intron 35.0%
ATTATCTTGCACTTGCAGTT+TGG - chr1_3:56656314-56656333 None:intergenic 35.0%
! GTTCATGAAACTTGTGGTTT+TGG - chr1_3:56656573-56656592 None:intergenic 35.0%
!! ATGTAAGTGCTGGCTTAATA+TGG - chr1_3:56656618-56656637 None:intergenic 35.0%
CGGCCAATATCATTTATGTT+TGG - chr1_3:56656672-56656691 None:intergenic 35.0%
!! TTGTTTCTGCTTGTTTAGTC+CGG - chr1_3:56656810-56656829 None:intergenic 35.0%
AAACAAGCAGAAACAACGAT+AGG + chr1_3:56656814-56656833 Msa0127420:intron 35.0%
AACAAGCAGAAACAACGATA+GGG + chr1_3:56656815-56656834 Msa0127420:intron 35.0%
AAATCATAATTGGCAGCTTC+TGG + chr1_3:56656880-56656899 Msa0127420:intron 35.0%
TGTTTGACAAAAATGAGCAG+AGG + chr1_3:56657035-56657054 Msa0127420:CDS 35.0%
AAGTACAATCCCAAACTTTC+AGG + chr1_3:56657071-56657090 Msa0127420:intron 35.0%
ACAGTTTCCAGGATAAAAAC+AGG - chr1_3:56657617-56657636 None:intergenic 35.0%
AACACAAATGAGGTTTCAGT+AGG + chr1_3:56657640-56657659 Msa0127420:intron 35.0%
! GAATATGCATGTTACTTGTG+AGG + chr1_3:56657762-56657781 Msa0127420:CDS 35.0%
! TGATATATTTGACTTCTCCG+AGG + chr1_3:56657951-56657970 Msa0127420:CDS 35.0%
TTACAACAATTCGAAGAGAG+GGG - chr1_3:56658213-56658232 None:intergenic 35.0%
!! GTTGTAAATTGGTGGTGTAA+AGG + chr1_3:56658226-56658245 Msa0127420:intron 35.0%
!! CTTTAGAGTTTATAGAGTGG+AGG + chr1_3:56658472-56658491 Msa0127420:intron 35.0%
ATCACAACCGTCTTCGTTAA+AGG + chr1_3:56650367-56650386 Msa0127420:five_prime_UTR 40.0%
!! TTCGGTTATTTGAGTTGTGG+TGG - chr1_3:56650408-56650427 None:intergenic 40.0%
!! GTGTTCGGTTATTTGAGTTG+TGG - chr1_3:56650411-56650430 None:intergenic 40.0%
CGATAAAAAACGACGGTGTT+CGG - chr1_3:56650426-56650445 None:intergenic 40.0%
TGCATAAGAGTTGAAGACGA+CGG - chr1_3:56650468-56650487 None:intergenic 40.0%
ATCGTGTAGATGAAGAAGCA+AGG + chr1_3:56650571-56650590 Msa0127420:exon 40.0%
TCGTGTAGATGAAGAAGCAA+GGG + chr1_3:56650572-56650591 Msa0127420:exon 40.0%
AACAACGTTTCCAAGAGCAA+TGG + chr1_3:56650601-56650620 Msa0127420:CDS 40.0%
TGCTACCTGATCTTTACGAT+CGG - chr1_3:56650734-56650753 None:intergenic 40.0%
GACATCGCATTAATTCTGGT+CGG - chr1_3:56651127-56651146 None:intergenic 40.0%
GACCAGAATTAATGCGATGT+CGG + chr1_3:56651126-56651145 Msa0127420:intron 40.0%
TTTACTCTCTCAAGAGGAGT+TGG - chr1_3:56651178-56651197 None:intergenic 40.0%
GCTTACTTTACTCTCTCAAG+AGG - chr1_3:56651184-56651203 None:intergenic 40.0%
! TTCGTGTTTTCCGACAAAAG+CGG + chr1_3:56651356-56651375 Msa0127420:intron 40.0%
!! TATACGAGTACCGCTTTTGT+CGG - chr1_3:56651369-56651388 None:intergenic 40.0%
GACCAGAATTAATGTGAGAC+TGG + chr1_3:56651434-56651453 Msa0127420:intron 40.0%
!! GAGACTGGTTTGTTTGATGA+TGG + chr1_3:56651449-56651468 Msa0127420:intron 40.0%
AGACAATCCAACTCCTCTTT+AGG + chr1_3:56651479-56651498 Msa0127420:intron 40.0%
GACAATCCAACTCCTCTTTA+GGG + chr1_3:56651480-56651499 Msa0127420:intron 40.0%
ACTTACGTAACTCCCTAAAG+AGG - chr1_3:56651495-56651514 None:intergenic 40.0%
TAAGTGGAATTGCATGACAG+TGG + chr1_3:56651552-56651571 Msa0127420:intron 40.0%
! TTTTGTCAAGCAGGTGCTTT+GGG + chr1_3:56651794-56651813 Msa0127420:intron 40.0%
TTCAAACGTGTACTCCTACT+CGG + chr1_3:56651852-56651871 Msa0127420:CDS 40.0%
ATCCATTGGAATAACCGAGT+AGG - chr1_3:56651869-56651888 None:intergenic 40.0%
!! TGGATTTCAAGTTCTCGATG+TGG + chr1_3:56651884-56651903 Msa0127420:CDS 40.0%
TGGAAGATGCCTCTAATATC+AGG + chr1_3:56651904-56651923 Msa0127420:CDS 40.0%
GGAAGATGCCTCTAATATCA+GGG + chr1_3:56651905-56651924 Msa0127420:CDS 40.0%
GACAAGTTCCCTGATATTAG+AGG - chr1_3:56651916-56651935 None:intergenic 40.0%
AGCATCACATCCTTTACTCT+TGG + chr1_3:56652013-56652032 Msa0127420:CDS 40.0%
CATGCAACAACCAAGAGTAA+AGG - chr1_3:56652026-56652045 None:intergenic 40.0%
ACAGTGCAAAATGTCAGAGA+TGG + chr1_3:56652068-56652087 Msa0127420:CDS 40.0%
ATTCCGTTCAACTGTCTACA+TGG + chr1_3:56652184-56652203 Msa0127420:CDS 40.0%
GGTTTACCAATTTCCTCCAT+TGG + chr1_3:56652361-56652380 Msa0127420:intron 40.0%
TGATACTTCATGAGGCCAAA+TGG + chr1_3:56652450-56652469 Msa0127420:intron 40.0%
ATCAAAACAACAAACTGGCC+AGG - chr1_3:56652549-56652568 None:intergenic 40.0%
! GTTGGGGTTAATATTGGCTA+TGG + chr1_3:56652670-56652689 Msa0127420:CDS 40.0%
! TAATATTGGCTATGGTCCGA+TGG + chr1_3:56652678-56652697 Msa0127420:CDS 40.0%
!! TAACAACAATGGGTTGTTGG+AGG - chr1_3:56652731-56652750 None:intergenic 40.0%
GCTAGATTCCATAGCATATC+GGG - chr1_3:56652836-56652855 None:intergenic 40.0%
CTAACTTTCCAGCCTGAATT+CGG - chr1_3:56652964-56652983 None:intergenic 40.0%
TTCAGCTTAGCCATAGAAGA+AGG + chr1_3:56653167-56653186 Msa0127420:intron 40.0%
TAGTTTATGTCAGTGGCAAC+TGG + chr1_3:56653208-56653227 Msa0127420:intron 40.0%
!!! TTTTGTTTCTAGAGCGGTTG+TGG + chr1_3:56653300-56653319 Msa0127420:CDS 40.0%
! CGCAGATATAGGACTAGTAT+GGG - chr1_3:56653338-56653357 None:intergenic 40.0%
CTAGTTACAGCCTCAATTCA+TGG + chr1_3:56653385-56653404 Msa0127420:CDS 40.0%
ATGCCTTCCTACTCAAAGAA+AGG + chr1_3:56653433-56653452 Msa0127420:CDS 40.0%
GATCCTTTCTTTGAGTAGGA+AGG - chr1_3:56653439-56653458 None:intergenic 40.0%
TCCTACTCAAAGAAAGGATC+GGG + chr1_3:56653439-56653458 Msa0127420:CDS 40.0%
AACAAAACCACTACCTAGGA+AGG - chr1_3:56653649-56653668 None:intergenic 40.0%
!!! TTCCTAGGTAGTGGTTTTGT+TGG + chr1_3:56653648-56653667 Msa0127420:intron 40.0%
AATATGACAAGTTCCCTTGG+AGG - chr1_3:56653850-56653869 None:intergenic 40.0%
ATACACAATCAGGACACAGA+AGG + chr1_3:56653909-56653928 Msa0127420:CDS 40.0%
AGAAAGAAAAGCAGGAGGTT+GGG - chr1_3:56654021-56654040 None:intergenic 40.0%
CTAACCACAGAAAGAAAAGC+AGG - chr1_3:56654029-56654048 None:intergenic 40.0%
TAATGCCGGATGGCTTAATA+CGG + chr1_3:56654064-56654083 Msa0127420:CDS 40.0%
ACTAACCGTATTAAGCCATC+CGG - chr1_3:56654072-56654091 None:intergenic 40.0%
AATGTTTCATCTTCTGCAGC+AGG + chr1_3:56654092-56654111 Msa0127420:CDS 40.0%
ATGTTTCATCTTCTGCAGCA+GGG + chr1_3:56654093-56654112 Msa0127420:CDS 40.0%
ATACGCAAAAGTTCATGCCA+TGG + chr1_3:56654187-56654206 Msa0127420:CDS 40.0%
ATAAACCAGCAAGTGTTCCA+TGG - chr1_3:56654207-56654226 None:intergenic 40.0%
!! TTGCTGGTTTATACTCCTTC+TGG + chr1_3:56654215-56654234 Msa0127420:CDS 40.0%
TCTTCTTGTATCTGTGGTGA+AGG - chr1_3:56654317-56654336 None:intergenic 40.0%
TGAAAGTGGAACCTGTTCAA+TGG + chr1_3:56654348-56654367 Msa0127420:CDS 40.0%
ACCAATTTGGCAGAAATCTG+AGG + chr1_3:56654571-56654590 Msa0127420:CDS 40.0%
ACCTCAGATTTCTGCCAAAT+TGG - chr1_3:56654575-56654594 None:intergenic 40.0%
!!! GTGATGGGTTCTTTTGAAAC+TGG + chr1_3:56654698-56654717 Msa0127420:CDS 40.0%
CTCTATTTCAATCTCCCCAT+TGG - chr1_3:56654750-56654769 None:intergenic 40.0%
CAATGGGGAGATTGAAATAG+AGG + chr1_3:56654748-56654767 Msa0127420:CDS 40.0%
TTGTGGAAATGATCAAGGAC+GGG - chr1_3:56654818-56654837 None:intergenic 40.0%
TCCACAAAATTCAGTCCACT+TGG + chr1_3:56654831-56654850 Msa0127420:CDS 40.0%
CCACAAAATTCAGTCCACTT+GGG + chr1_3:56654832-56654851 Msa0127420:CDS 40.0%
CACAAAATTCAGTCCACTTG+GGG + chr1_3:56654833-56654852 Msa0127420:CDS 40.0%
CCAGTGGACCAAAAACAAAA+AGG - chr1_3:56654883-56654902 None:intergenic 40.0%
!!! CCTTTTTGTTTTTGGTCCAC+TGG + chr1_3:56654880-56654899 Msa0127420:intron 40.0%
ACACCTCTTCGTATGTGTTT+AGG + chr1_3:56655010-56655029 Msa0127420:intron 40.0%
TGCAAAGGATGTAGAACGTA+AGG - chr1_3:56655058-56655077 None:intergenic 40.0%
TTCGTGAATCTGCATTTCGT+AGG - chr1_3:56655339-56655358 None:intergenic 40.0%
!! ATGTTAGGTTGATAACACGG+TGG + chr1_3:56655424-56655443 Msa0127420:intron 40.0%
!!! AGTGCTTTTCTTGTTTTCCG+TGG + chr1_3:56655451-56655470 Msa0127420:intron 40.0%
TTCCGTGGATTTAGTATTCG+TGG + chr1_3:56655466-56655485 Msa0127420:intron 40.0%
GAGCAATAAACAGAGGAACA+AGG - chr1_3:56655575-56655594 None:intergenic 40.0%
! TAGACTGGGTGTGATTTTTC+AGG + chr1_3:56655604-56655623 Msa0127420:intron 40.0%
!! AATTGTCAGAGGCATTGTTC+TGG + chr1_3:56655744-56655763 Msa0127420:intron 40.0%
!! ATTGTCAGAGGCATTGTTCT+GGG + chr1_3:56655745-56655764 Msa0127420:intron 40.0%
AGGTACAGTTAACTTCGGAT+GGG - chr1_3:56655839-56655858 None:intergenic 40.0%
AAGCCAGGTACAGTTAACTT+CGG - chr1_3:56655844-56655863 None:intergenic 40.0%
!! TTAACTGTACCTGGCTTTGT+GGG + chr1_3:56655847-56655866 Msa0127420:CDS 40.0%
! TATGTTTTTCCCACAAAGCC+AGG - chr1_3:56655859-56655878 None:intergenic 40.0%
CTTACCCCTATTTATAGGGA+TGG + chr1_3:56656038-56656057 Msa0127420:intron 40.0%
GTACCCATCCCTATAAATAG+GGG - chr1_3:56656045-56656064 None:intergenic 40.0%
CAGTACCCATCCCTATAAAT+AGG - chr1_3:56656047-56656066 None:intergenic 40.0%
CTATTTATAGGGATGGGTAC+TGG + chr1_3:56656045-56656064 Msa0127420:intron 40.0%
CATGAGAGTTATTGCAGTTC+AGG - chr1_3:56656278-56656297 None:intergenic 40.0%
CCTGTTGTTCATGAAACTTG+TGG - chr1_3:56656579-56656598 None:intergenic 40.0%
CCACAAGTTTCATGAACAAC+AGG + chr1_3:56656576-56656595 Msa0127420:intron 40.0%
ACAAGCAGAAACAACGATAG+GGG + chr1_3:56656816-56656835 Msa0127420:intron 40.0%
AACGATAGGGGTAGAAGAAT+AGG + chr1_3:56656828-56656847 Msa0127420:intron 40.0%
TGTCGAGTTCCTGAAAGTTT+GGG - chr1_3:56657083-56657102 None:intergenic 40.0%
TAATATGAGACTTGACACGG+AGG + chr1_3:56657109-56657128 Msa0127420:intron 40.0%
CTCTGATGGTATAGCTACAA+AGG + chr1_3:56657675-56657694 Msa0127420:CDS 40.0%
AGCAGAAGTTACTACTGATG+TGG + chr1_3:56657864-56657883 Msa0127420:CDS 40.0%
AGGGAGAAATCTGATGAAGA+TGG + chr1_3:56657907-56657926 Msa0127420:CDS 40.0%
! GGTGATAATGATGACATGCT+TGG + chr1_3:56657928-56657947 Msa0127420:CDS 40.0%
! ATATTTGACTTCTCCGAGGA+AGG + chr1_3:56657955-56657974 Msa0127420:CDS 40.0%
TTTCAGATTCGTACCTTCCT+CGG - chr1_3:56657971-56657990 None:intergenic 40.0%
TTTGTGTGCATGCATGTATG+TGG + chr1_3:56658037-56658056 Msa0127420:intron 40.0%
TTGTGTGCATGCATGTATGT+GGG + chr1_3:56658038-56658057 Msa0127420:intron 40.0%
!! GTAGCATTTAGCTTGTTGCA+AGG - chr1_3:56658279-56658298 None:intergenic 40.0%
!! TGCTACTGACCATTGATTCA+AGG + chr1_3:56658293-56658312 Msa0127420:intron 40.0%
TAGAAGGTCAGAAGAATCAC+TGG - chr1_3:56658352-56658371 None:intergenic 40.0%
AGATTATTTGTGTGGCCACT+GGG + chr1_3:56658411-56658430 Msa0127420:intron 40.0%
AGAGTTTATAGAGTGGAGGA+AGG + chr1_3:56658476-56658495 Msa0127420:intron 40.0%
ACCAAAGCATAGCAGAATCG+CGG + chr1_3:56650322-56650341 Msa0127420:five_prime_UTR 45.0%
!! GATTTTCTAAAGGCCACCAC+CGG - chr1_3:56650554-56650573 None:intergenic 45.0%
AGGAACGAATCCATTGCTCT+TGG - chr1_3:56650614-56650633 None:intergenic 45.0%
TGGAACCGATCGTAAAGATC+AGG + chr1_3:56650726-56650745 Msa0127420:CDS 45.0%
CACCGACATCGCATTAATTC+TGG - chr1_3:56651131-56651150 None:intergenic 45.0%
TAATGCGATGTCGGTGATGA+TGG + chr1_3:56651135-56651154 Msa0127420:intron 45.0%
ACTTGTGTGGCAATCGAGTA+TGG + chr1_3:56651248-56651267 Msa0127420:intron 45.0%
GAATGATGCGTGAAGACAGT+TGG + chr1_3:56651303-56651322 Msa0127420:intron 45.0%
TTGTCGGAAAACACGAAGGT+GGG - chr1_3:56651353-56651372 None:intergenic 45.0%
TTTGTCGGAAAACACGAAGG+TGG - chr1_3:56651354-56651373 None:intergenic 45.0%
! GCTTTTGTCGGAAAACACGA+AGG - chr1_3:56651357-56651376 None:intergenic 45.0%
GTAACTCCCTAAAGAGGAGT+TGG - chr1_3:56651489-56651508 None:intergenic 45.0%
! CTTTTGTCAAGCAGGTGCTT+TGG + chr1_3:56651793-56651812 Msa0127420:intron 45.0%
CTCCTACTCGGTTATTCCAA+TGG + chr1_3:56651864-56651883 Msa0127420:CDS 45.0%
! CTGACATTTTGCACTGTACC+AGG - chr1_3:56652065-56652084 None:intergenic 45.0%
AGTCCTCAAATAGTCGCTGT+GGG + chr1_3:56652215-56652234 Msa0127420:CDS 45.0%
AGCTACCCAATGGAGGAAAT+TGG - chr1_3:56652370-56652389 None:intergenic 45.0%
CAGGACACTGATACTTCATG+AGG + chr1_3:56652442-56652461 Msa0127420:intron 45.0%
ACTTATCCTGTGCCTCAGTT+GGG + chr1_3:56652634-56652653 Msa0127420:CDS 45.0%
GGAACGGTTGGGGTTAATAT+TGG + chr1_3:56652664-56652683 Msa0127420:CDS 45.0%
! TCTAGCAAGCATTTGGCTTC+TGG + chr1_3:56652850-56652869 Msa0127420:CDS 45.0%
! CTAGCAAGCATTTGGCTTCT+GGG + chr1_3:56652851-56652870 Msa0127420:CDS 45.0%
! AGCCTGAATTCGGTGATACA+GGG - chr1_3:56652954-56652973 None:intergenic 45.0%
AGCGGTTGTGGCACAATTTA+GGG + chr1_3:56653312-56653331 Msa0127420:CDS 45.0%
! GCGCAGATATAGGACTAGTA+TGG - chr1_3:56653339-56653358 None:intergenic 45.0%
!!! GCGCTATGTTTTGATCAGAG+TGG + chr1_3:56653355-56653374 Msa0127420:CDS 45.0%
ACCCGATCCTTTCTTTGAGT+AGG - chr1_3:56653443-56653462 None:intergenic 45.0%
CGGGTTCTCAAAGCAATGAT+TGG + chr1_3:56653458-56653477 Msa0127420:CDS 45.0%
AACCTTACCTTCCTAGGTAG+TGG + chr1_3:56653639-56653658 Msa0127420:intron 45.0%
AACCACTACCTAGGAAGGTA+AGG - chr1_3:56653644-56653663 None:intergenic 45.0%
GACCAACAAAACCACTACCT+AGG - chr1_3:56653653-56653672 None:intergenic 45.0%
AGTTCCCTTGGAGGAAATGA+CGG - chr1_3:56653841-56653860 None:intergenic 45.0%
! TTTGTCCTTTCCCCTTTTGG+TGG + chr1_3:56653870-56653889 Msa0127420:CDS 45.0%
AACTGTCTCACCACCAAAAG+GGG - chr1_3:56653883-56653902 None:intergenic 45.0%
GAACTGTCTCACCACCAAAA+GGG - chr1_3:56653884-56653903 None:intergenic 45.0%
AGAACTGTCTCACCACCAAA+AGG - chr1_3:56653885-56653904 None:intergenic 45.0%
! AGAAGGACCTGTTCTTTTGC+CGG + chr1_3:56653926-56653945 Msa0127420:CDS 45.0%
GGAAAAACCGGCAAAAGAAC+AGG - chr1_3:56653936-56653955 None:intergenic 45.0%
CACCATGGTAGAGGAAAAAC+CGG - chr1_3:56653948-56653967 None:intergenic 45.0%
AAATGTGGAGTGAACCACCA+TGG - chr1_3:56653963-56653982 None:intergenic 45.0%
GAAAGAAAAGCAGGAGGTTG+GGG - chr1_3:56654020-56654039 None:intergenic 45.0%
CAGAAAGAAAAGCAGGAGGT+TGG - chr1_3:56654022-56654041 None:intergenic 45.0%
!! ACCTCCTGCTTTTCTTTCTG+TGG + chr1_3:56654022-56654041 Msa0127420:CDS 45.0%
ACCACAGAAAGAAAAGCAGG+AGG - chr1_3:56654026-56654045 None:intergenic 45.0%
TATGCATTGTGCGAATCAGG+AGG - chr1_3:56654170-56654189 None:intergenic 45.0%
CTGCCATCAATGACGATAGT+AGG - chr1_3:56654259-56654278 None:intergenic 45.0%
AAGTGGAACCTGTTCAATGG+TGG + chr1_3:56654351-56654370 Msa0127420:CDS 45.0%
AGTGGAACCTGTTCAATGGT+GGG + chr1_3:56654352-56654371 Msa0127420:CDS 45.0%
! TCTATATCAGGGAGTACACC+TGG + chr1_3:56654413-56654432 Msa0127420:CDS 45.0%
TTGTCACGTCTCAAATGCAG+AGG + chr1_3:56654526-56654545 Msa0127420:CDS 45.0%
! GCAGAGGTGCATATAAACTC+CGG + chr1_3:56654542-56654561 Msa0127420:CDS 45.0%
! CAGAGGTGCATATAAACTCC+GGG + chr1_3:56654543-56654562 Msa0127420:CDS 45.0%
!!! CCCAAGTGGACTGAATTTTG+TGG - chr1_3:56654835-56654854 None:intergenic 45.0%
! GTTTTACGTTGTTACGGCCA+AGG + chr1_3:56655237-56655256 Msa0127420:intron 45.0%
AACTGCATTGCACTGTATCG+TGG - chr1_3:56655364-56655383 None:intergenic 45.0%
CAGGTACAGTTAACTTCGGA+TGG - chr1_3:56655840-56655859 None:intergenic 45.0%
CATCCGAAGTTAACTGTACC+TGG + chr1_3:56655838-56655857 Msa0127420:CDS 45.0%
!! GTTAACTGTACCTGGCTTTG+TGG + chr1_3:56655846-56655865 Msa0127420:CDS 45.0%
AATCGTTCCAGCTAGGTCTT+TGG - chr1_3:56656644-56656663 None:intergenic 45.0%
! GGTTTGAAATCGTTCCAGCT+AGG - chr1_3:56656651-56656670 None:intergenic 45.0%
GATAGGGGTAGAAGAATAGG+AGG + chr1_3:56656831-56656850 Msa0127420:intron 45.0%
GACAAAAATGAGCAGAGGTC+TGG + chr1_3:56657040-56657059 Msa0127420:CDS 45.0%
CTGTCGAGTTCCTGAAAGTT+TGG - chr1_3:56657084-56657103 None:intergenic 45.0%
TTCAATATGGTATCTGCGCC+AGG - chr1_3:56657141-56657160 None:intergenic 45.0%
!!! GGAGTCACCTGTTTTTATCC+TGG + chr1_3:56657607-56657626 Msa0127420:intron 45.0%
GGAGCCTCAAATTTCTCTGA+TGG + chr1_3:56657661-56657680 Msa0127420:CDS 45.0%
CAGATTATTTGTGTGGCCAC+TGG + chr1_3:56658410-56658429 Msa0127420:intron 45.0%
ACATAAAGAAACCCACCCAG+TGG - chr1_3:56658429-56658448 None:intergenic 45.0%
!!! TTAATTTTTTTGAATTTTTT+CGG + chr1_3:56650755-56650774 Msa0127420:intron 5.0%
!!! TTGAATTAAATATTTAATTT+AGG + chr1_3:56650988-56651007 Msa0127420:intron 5.0%
ACGGCGGCGATAAAAAACGA+CGG - chr1_3:56650433-56650452 None:intergenic 50.0%
!!! TTTTTTATCGCCGCCGTGCA+CGG + chr1_3:56650436-56650455 Msa0127420:five_prime_UTR 50.0%
AGAGTTGAAGACGACGGAGT+TGG - chr1_3:56650462-56650481 None:intergenic 50.0%
TGCATTAAGACGGCTTCCTC+CGG + chr1_3:56650658-56650677 Msa0127420:CDS 50.0%
! TTTACGATCGGTTCCATCGC+CGG - chr1_3:56650722-56650741 None:intergenic 50.0%
CTGACCTCAAACTGTAGCAG+CGG + chr1_3:56651695-56651714 Msa0127420:intron 50.0%
AAGTCCGCTGCTACAGTTTG+AGG - chr1_3:56651702-56651721 None:intergenic 50.0%
! TGCTTTGGGCTTGCTTTGAC+AGG + chr1_3:56651808-56651827 Msa0127420:CDS 50.0%
TGCTTTGACAGGCTAGAGCT+CGG + chr1_3:56651819-56651838 Msa0127420:CDS 50.0%
TTTCAGCCTGAGCTTCGTTG+TGG - chr1_3:56652094-56652113 None:intergenic 50.0%
CAGTCCTCAAATAGTCGCTG+TGG + chr1_3:56652214-56652233 Msa0127420:CDS 50.0%
AGACCCACAGCGACTATTTG+AGG - chr1_3:56652221-56652240 None:intergenic 50.0%
CACTTATCCTGTGCCTCAGT+TGG + chr1_3:56652633-56652652 Msa0127420:CDS 50.0%
!! CGCTGCTTGGTGATGTTGAT+GGG - chr1_3:56652801-56652820 None:intergenic 50.0%
CCATCAACATCACCAAGCAG+CGG + chr1_3:56652799-56652818 Msa0127420:CDS 50.0%
! ATTCGGTGATACAGGGGAAC+TGG - chr1_3:56652947-56652966 None:intergenic 50.0%
TCCCCTGTATCACCGAATTC+AGG + chr1_3:56652949-56652968 Msa0127420:CDS 50.0%
! GCCTGAATTCGGTGATACAG+GGG - chr1_3:56652953-56652972 None:intergenic 50.0%
! CAGCCTGAATTCGGTGATAC+AGG - chr1_3:56652955-56652974 None:intergenic 50.0%
CTGTATCACCGAATTCAGGC+TGG + chr1_3:56652953-56652972 Msa0127420:CDS 50.0%
TCTACAGAAACAGATGCGGC+TGG + chr1_3:56653000-56653019 Msa0127420:CDS 50.0%
GAGCGGTTGTGGCACAATTT+AGG + chr1_3:56653311-56653330 Msa0127420:CDS 50.0%
ATACTGCGGATGTCATGCCA+CGG - chr1_3:56653516-56653535 None:intergenic 50.0%
CGGAGAATAGCAGCATACTG+CGG - chr1_3:56653530-56653549 None:intergenic 50.0%
GTTGCCGTCATTTCCTCCAA+GGG + chr1_3:56653834-56653853 Msa0127420:CDS 50.0%
TCTCACCACCAAAAGGGGAA+AGG - chr1_3:56653878-56653897 None:intergenic 50.0%
!!! TGCCGGTTTTTCCTCTACCA+TGG + chr1_3:56653943-56653962 Msa0127420:CDS 50.0%
! CGGTTTTTCCTCTACCATGG+TGG + chr1_3:56653946-56653965 Msa0127420:CDS 50.0%
GGGAAAGTCTCAGTTCCATC+TGG + chr1_3:56654113-56654132 Msa0127420:CDS 50.0%
ACAGCAGAAACAGCACCAGA+TGG - chr1_3:56654131-56654150 None:intergenic 50.0%
GCGTATGCATTGTGCGAATC+AGG - chr1_3:56654173-56654192 None:intergenic 50.0%
TCATGCCATGGAACACTTGC+TGG + chr1_3:56654199-56654218 Msa0127420:CDS 50.0%
CAGACATCCCACCATTGAAC+AGG - chr1_3:56654362-56654381 None:intergenic 50.0%
! ATATCAGGGAGTACACCTGG+TGG + chr1_3:56654416-56654435 Msa0127420:CDS 50.0%
AGGTGCATATAAACTCCGGG+AGG + chr1_3:56654546-56654565 Msa0127420:CDS 50.0%
ACTCCGGGAGGATACCAATT+TGG + chr1_3:56654558-56654577 Msa0127420:CDS 50.0%
CTGCCAAATTGGTATCCTCC+CGG - chr1_3:56654564-56654583 None:intergenic 50.0%
! TCTTTGGCGGATGTAAGTGC+TGG - chr1_3:56656628-56656647 None:intergenic 50.0%
GCTTCAGCTGCTGTAAGCAT+CGG - chr1_3:56656692-56656711 None:intergenic 50.0%
CAGCAGCTGAAGCTATAGCT+AGG + chr1_3:56656699-56656718 Msa0127420:intron 50.0%
TGTTAGGTGGCAGCATACAG+TGG + chr1_3:56656951-56656970 Msa0127420:CDS 50.0%
GTTAGGTGGCAGCATACAGT+GGG + chr1_3:56656952-56656971 Msa0127420:CDS 50.0%
TTGACACGGAGGATCAAACC+TGG + chr1_3:56657120-56657139 Msa0127420:intron 50.0%
TCAGATTTCTCCCTGCCAGA+GGG - chr1_3:56657901-56657920 None:intergenic 50.0%
ATCAGATTTCTCCCTGCCAG+AGG - chr1_3:56657902-56657921 None:intergenic 50.0%
TTATTTGTGTGGCCACTGGG+TGG + chr1_3:56658414-56658433 Msa0127420:intron 50.0%
TATTTGTGTGGCCACTGGGT+GGG + chr1_3:56658415-56658434 Msa0127420:intron 50.0%
GCCGCGATTCTGCTATGCTT+TGG - chr1_3:56650326-56650345 None:intergenic 55.0%
TCCGTCGCTGCTTCTATCTC+CGG + chr1_3:56650700-56650719 Msa0127420:CDS 55.0%
CCTCTCCCTGCAAAAGCAGA+GGG + chr1_3:56651975-56651994 Msa0127420:CDS 55.0%
!! CACAGCCCTCTGCTTTTGCA+GGG - chr1_3:56651983-56652002 None:intergenic 55.0%
!! TCACAGCCCTCTGCTTTTGC+AGG - chr1_3:56651984-56652003 None:intergenic 55.0%
GCAAAAGCAGAGGGCTGTGA+AGG + chr1_3:56651984-56652003 Msa0127420:CDS 55.0%
AGATGGCCACAACGAAGCTC+AGG + chr1_3:56652085-56652104 Msa0127420:CDS 55.0%
AGCGAAGAGCTACCCAATGG+AGG - chr1_3:56652377-56652396 None:intergenic 55.0%
TATCCTGTGCCTCAGTTGGG+TGG + chr1_3:56652637-56652656 Msa0127420:CDS 55.0%
ATCCTGTGCCTCAGTTGGGT+GGG + chr1_3:56652638-56652657 Msa0127420:CDS 55.0%
TCAGTTGGGTGGGCAAGGAA+CGG + chr1_3:56652648-56652667 Msa0127420:CDS 55.0%
GCTATGGTCCGATGGCTGTA+GGG + chr1_3:56652686-56652705 Msa0127420:CDS 55.0%
GAGGCATAAGCTAACCACCG+TGG - chr1_3:56652712-56652731 None:intergenic 55.0%
!! GATGTTGATGGGCTGACAGC+AGG - chr1_3:56652790-56652809 None:intergenic 55.0%
!! CCGCTGCTTGGTGATGTTGA+TGG - chr1_3:56652802-56652821 None:intergenic 55.0%
ATCACCAAGCAGCGGAAACC+TGG + chr1_3:56652807-56652826 Msa0127420:CDS 55.0%
CCATAGCATATCGGGCTACC+AGG - chr1_3:56652828-56652847 None:intergenic 55.0%
CCTGGTAGCCCGATATGCTA+TGG + chr1_3:56652825-56652844 Msa0127420:CDS 55.0%
ACAGGGGAACTGGATCCATC+AGG - chr1_3:56652937-56652956 None:intergenic 55.0%
AGAAACAGATGCGGCTGGAG+TGG + chr1_3:56653005-56653024 Msa0127420:CDS 55.0%
CACCTTTACAAGCTCCACCG+TGG + chr1_3:56653496-56653515 Msa0127420:CDS 55.0%
TGCCACGGTGGAGCTTGTAA+AGG - chr1_3:56653501-56653520 None:intergenic 55.0%
GGTTGCCGTCATTTCCTCCA+AGG + chr1_3:56653833-56653852 Msa0127420:CDS 55.0%
GGAGTGAACCACCATGGTAG+AGG - chr1_3:56653957-56653976 None:intergenic 55.0%
GGTGGCAAAGCTGTTGATGC+TGG - chr1_3:56653995-56654014 None:intergenic 55.0%
GAAAAGCAGGAGGTTGGGGT+GGG - chr1_3:56654016-56654035 None:intergenic 55.0%
AGAAAAGCAGGAGGTTGGGG+TGG - chr1_3:56654017-56654036 None:intergenic 55.0%
TCAGCAGTTTCCAGTCCACC+AGG - chr1_3:56654434-56654453 None:intergenic 55.0%
TTCAGTCCACTTGGGGTGAC+AGG + chr1_3:56654840-56654859 Msa0127420:CDS 55.0%
CTGTTACCTGTCACCCCAAG+TGG - chr1_3:56654849-56654868 None:intergenic 55.0%
ACATCCGCCAAAGACCTAGC+TGG + chr1_3:56656634-56656653 Msa0127420:intron 55.0%
CGTTCCAGCTAGGTCTTTGG+CGG - chr1_3:56656641-56656660 None:intergenic 55.0%
GGGTAGAAGAATAGGAGGCC+TGG + chr1_3:56656836-56656855 Msa0127420:intron 55.0%
GAAGTGATCTCAGCAGTGCC+AGG - chr1_3:56656857-56656876 None:intergenic 55.0%
ATTGGCAGCTTCTGGTGCTC+TGG + chr1_3:56656888-56656907 Msa0127420:intron 55.0%
TTGGCAGCTTCTGGTGCTCT+GGG + chr1_3:56656889-56656908 Msa0127420:intron 55.0%
GTGGGTGGGTCAGACAACAA+TGG + chr1_3:56656970-56656989 Msa0127420:CDS 55.0%
GGTGGGTCAGACAACAATGG+TGG + chr1_3:56656973-56656992 Msa0127420:CDS 55.0%
GGTCAGACAACAATGGTGGC+AGG + chr1_3:56656977-56656996 Msa0127420:CDS 55.0%
GACAACAATGGTGGCAGGCA+CGG + chr1_3:56656982-56657001 Msa0127420:CDS 55.0%
GTTGCTGCCACCATCTACCA+CGG - chr1_3:56657008-56657027 None:intergenic 55.0%
! GTGGATTGTAGCAGTCCCTC+TGG + chr1_3:56657883-56657902 Msa0127420:CDS 55.0%
ATTGTAGCAGTCCCTCTGGC+AGG + chr1_3:56657887-56657906 Msa0127420:CDS 55.0%
TTGTAGCAGTCCCTCTGGCA+GGG + chr1_3:56657888-56657907 Msa0127420:CDS 55.0%
AGTCGCGGAACGCAGTCGAT+CGG - chr1_3:56650495-56650514 None:intergenic 60.0%
CGGAATTCCCGGTCACTCAC+CGG + chr1_3:56650532-56650551 Msa0127420:five_prime_UTR 60.0%
AATTCCCGGTCACTCACCGG+TGG + chr1_3:56650535-56650554 Msa0127420:five_prime_UTR 60.0%
GGAGATAGAAGCAGCGACGG+AGG - chr1_3:56650701-56650720 None:intergenic 60.0%
GCCGGAGATAGAAGCAGCGA+CGG - chr1_3:56650704-56650723 None:intergenic 60.0%
GCTGCTTCTATCTCCGGCGA+TGG + chr1_3:56650706-56650725 Msa0127420:CDS 60.0%
GCCTCTCCCTGCAAAAGCAG+AGG + chr1_3:56651974-56651993 Msa0127420:CDS 60.0%
!! CCCTCTGCTTTTGCAGGGAG+AGG - chr1_3:56651978-56651997 None:intergenic 60.0%
GGGAGCGAAGAGCTACCCAA+TGG - chr1_3:56652380-56652399 None:intergenic 60.0%
GTTCCTTGCCCACCCAACTG+AGG - chr1_3:56652649-56652668 None:intergenic 60.0%
TTGGGTGGGCAAGGAACGGT+TGG + chr1_3:56652652-56652671 Msa0127420:CDS 60.0%
TGGGTGGGCAAGGAACGGTT+GGG + chr1_3:56652653-56652672 Msa0127420:CDS 60.0%
GGCTATGGTCCGATGGCTGT+AGG + chr1_3:56652685-56652704 Msa0127420:CDS 60.0%
GCAGGAGGAGTCGGACTTTG+AGG - chr1_3:56652772-56652791 None:intergenic 60.0%
!! GTTGATGGGCTGACAGCAGG+AGG - chr1_3:56652787-56652806 None:intergenic 60.0%
GCTACCAGGTTTCCGCTGCT+TGG - chr1_3:56652814-56652833 None:intergenic 60.0%
! AGGGAGTACACCTGGTGGAC+TGG + chr1_3:56654421-56654440 Msa0127420:CDS 60.0%
TGGCAGCTTCTGGTGCTCTG+GGG + chr1_3:56656890-56656909 Msa0127420:intron 60.0%
AGGTGGCAGCATACAGTGGG+TGG + chr1_3:56656955-56656974 Msa0127420:CDS 60.0%
GGTGGCAGCATACAGTGGGT+GGG + chr1_3:56656956-56656975 Msa0127420:CDS 60.0%
ACGACGGAGTTGGCCGTGCA+CGG - chr1_3:56650452-56650471 None:intergenic 65.0%
CGTTCCGCGACTCTCGTCGT+CGG + chr1_3:56650503-56650522 Msa0127420:five_prime_UTR 65.0%
ACTCTCGTCGTCGGCAGGGA+CGG + chr1_3:56650512-56650531 Msa0127420:five_prime_UTR 65.0%
GTCGGCAGGGACGGAATTCC+CGG + chr1_3:56650521-56650540 Msa0127420:five_prime_UTR 65.0%
TGCCCACCCAACTGAGGCAC+AGG - chr1_3:56652643-56652662 None:intergenic 65.0%
GTGCCTCAGTTGGGTGGGCA+AGG + chr1_3:56652643-56652662 Msa0127420:CDS 65.0%
GGGTGGGCAAGGAACGGTTG+GGG + chr1_3:56652654-56652673 Msa0127420:CDS 65.0%
GTCCGATGGCTGTAGGGCCA+CGG + chr1_3:56652692-56652711 Msa0127420:CDS 65.0%
CACCGTGGCCCTACAGCCAT+CGG - chr1_3:56652697-56652716 None:intergenic 65.0%
GGGCTGACAGCAGGAGGAGT+CGG - chr1_3:56652781-56652800 None:intergenic 65.0%
CTGCGGATGTCATGCCACGG+TGG - chr1_3:56653513-56653532 None:intergenic 65.0%
AAGCAGGAGGTTGGGGTGGG+TGG - chr1_3:56654013-56654032 None:intergenic 65.0%
GGCAGCTTCTGGTGCTCTGG+GGG + chr1_3:56656891-56656910 Msa0127420:intron 65.0%
ACGGAGTTGGCCGTGCACGG+CGG - chr1_3:56650449-56650468 None:intergenic 70.0%
CCTGCCGACGACGAGAGTCG+CGG - chr1_3:56650510-56650529 None:intergenic 70.0%
CGCGACTCTCGTCGTCGGCA+GGG + chr1_3:56650508-56650527 Msa0127420:five_prime_UTR 70.0%
TCCCGGTCACTCACCGGTGG+TGG + chr1_3:56650538-56650557 Msa0127420:five_prime_UTR 70.0%
GCCACCACCGGTGAGTGACC+GGG - chr1_3:56650542-56650561 None:intergenic 70.0%
GGCCACCACCGGTGAGTGAC+CGG - chr1_3:56650543-56650562 None:intergenic 70.0%
TCCTCCGGCGTCCGTACTGC+CGG + chr1_3:56650673-56650692 Msa0127420:CDS 70.0%
! AGAAGCAGCGACGGAGGCGC+CGG - chr1_3:56650695-56650714 None:intergenic 70.0%
CGATGGCTGTAGGGCCACGG+TGG + chr1_3:56652695-56652714 Msa0127420:CDS 70.0%
AATGGTGGCAGGCACGGCCG+TGG + chr1_3:56656988-56657007 Msa0127420:CDS 70.0%
GCAGGCACGGCCGTGGTAGA+TGG + chr1_3:56656995-56657014 Msa0127420:CDS 70.0%
GGCACGGCCGTGGTAGATGG+TGG + chr1_3:56656998-56657017 Msa0127420:CDS 70.0%
CCGCGACTCTCGTCGTCGGC+AGG + chr1_3:56650507-56650526 Msa0127420:five_prime_UTR 75.0%
!! CGACGGAGGCGCCGGCAGTA+CGG - chr1_3:56650687-56650706 None:intergenic 75.0%
! GCCGGCAGTACGGACGCCGG+AGG - chr1_3:56650677-56650696 None:intergenic 80.0%
!!! GGCGCCGGCAGTACGGACGC+CGG - chr1_3:56650680-56650699 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56650219 56658530 56650219 ID=Msa0127420;Name=Msa0127420
chr1_3 mRNA 56650219 56658530 56650219 ID=Msa0127420-mRNA-1;Parent=Msa0127420;Name=Msa0127420-mRNA-1;_AED=0.20;_eAED=0.21;_QI=361|0.66|0.7|1|1|1|10|0|968
chr1_3 exon 56650219 56650747 56650219 ID=Msa0127420-mRNA-1:exon:17940;Parent=Msa0127420-mRNA-1
chr1_3 exon 56651807 56652250 56651807 ID=Msa0127420-mRNA-1:exon:17941;Parent=Msa0127420-mRNA-1
chr1_3 exon 56652586 56653026 56652586 ID=Msa0127420-mRNA-1:exon:17942;Parent=Msa0127420-mRNA-1
chr1_3 exon 56653286 56653531 56653286 ID=Msa0127420-mRNA-1:exon:17943;Parent=Msa0127420-mRNA-1
chr1_3 exon 56653795 56654592 56653795 ID=Msa0127420-mRNA-1:exon:17944;Parent=Msa0127420-mRNA-1
chr1_3 exon 56654686 56654861 56654686 ID=Msa0127420-mRNA-1:exon:17945;Parent=Msa0127420-mRNA-1
chr1_3 exon 56655753 56655883 56655753 ID=Msa0127420-mRNA-1:exon:17946;Parent=Msa0127420-mRNA-1
chr1_3 exon 56656948 56657072 56656948 ID=Msa0127420-mRNA-1:exon:17947;Parent=Msa0127420-mRNA-1
chr1_3 exon 56657652 56657976 56657652 ID=Msa0127420-mRNA-1:exon:17948;Parent=Msa0127420-mRNA-1
chr1_3 exon 56658478 56658530 56658478 ID=Msa0127420-mRNA-1:exon:17949;Parent=Msa0127420-mRNA-1
chr1_3 five_prime_UTR 56650219 56650579 56650219 ID=Msa0127420-mRNA-1:five_prime_utr;Parent=Msa0127420-mRNA-1
chr1_3 CDS 56650580 56650747 56650580 ID=Msa0127420-mRNA-1:cds;Parent=Msa0127420-mRNA-1
chr1_3 CDS 56651807 56652250 56651807 ID=Msa0127420-mRNA-1:cds;Parent=Msa0127420-mRNA-1
chr1_3 CDS 56652586 56653026 56652586 ID=Msa0127420-mRNA-1:cds;Parent=Msa0127420-mRNA-1
chr1_3 CDS 56653286 56653531 56653286 ID=Msa0127420-mRNA-1:cds;Parent=Msa0127420-mRNA-1
chr1_3 CDS 56653795 56654592 56653795 ID=Msa0127420-mRNA-1:cds;Parent=Msa0127420-mRNA-1
chr1_3 CDS 56654686 56654861 56654686 ID=Msa0127420-mRNA-1:cds;Parent=Msa0127420-mRNA-1
chr1_3 CDS 56655753 56655883 56655753 ID=Msa0127420-mRNA-1:cds;Parent=Msa0127420-mRNA-1
chr1_3 CDS 56656948 56657072 56656948 ID=Msa0127420-mRNA-1:cds;Parent=Msa0127420-mRNA-1
chr1_3 CDS 56657652 56657976 56657652 ID=Msa0127420-mRNA-1:cds;Parent=Msa0127420-mRNA-1
chr1_3 CDS 56658478 56658530 56658478 ID=Msa0127420-mRNA-1:cds;Parent=Msa0127420-mRNA-1
Gene Sequence

>Msa0127420

ATGAAGAAGCAAGGGAAGAACAACAACGTTTCCAAGAGCAATGGATTCGTTCCTTCTTCTTTCAAGTTCATTTCGTCTTGCATTAAGACGGCTTCCTCCGGCGTCCGTACTGCCGGCGCCTCCGTCGCTGCTTCTATCTCCGGCGATGGAACCGATCGTAAAGATCAGGTGCTTTGGGCTTGCTTTGACAGGCTAGAGCTCGGTCTGTCTTCTTTCAAACGTGTACTCCTACTCGGTTATTCCAATGGATTTCAAGTTCTCGATGTGGAAGATGCCTCTAATATCAGGGAACTTGTCTCAAAACGTGATGATCCAGTTTCGTTTTTACAGATGCAGCCTCTCCCTGCAAAAGCAGAGGGCTGTGAAGGATTTAGAGCATCACATCCTTTACTCTTGGTTGTTGCATGTGATAAATCAAAGATACCTGGTACAGTGCAAAATGTCAGAGATGGCCACAACGAAGCTCAGGCTGAAAATATTATCAACTCAGCTACAACTGTTAGATTCTACTCACTAAGGTCCCATACCTATGTTCATGCTCTAAGATTCCGTTCAACTGTCTACATGGTTAGATGCAGTCCTCAAATAGTCGCTGTGGGTCTTGCTACTCAAATATACTGTTTTGATGCTCTTACTCTTGAGAATAAATTCAGTGTTCTCACTTATCCTGTGCCTCAGTTGGGTGGGCAAGGAACGGTTGGGGTTAATATTGGCTATGGTCCGATGGCTGTAGGGCCACGGTGGTTAGCTTATGCCTCCAACAACCCATTGTTGTTAAACACAAGTCGCTTAAGTCCTCAAAGTCCGACTCCTCCTGCTGTCAGCCCATCAACATCACCAAGCAGCGGAAACCTGGTAGCCCGATATGCTATGGAATCTAGCAAGCATTTGGCTTCTGGGCTGATCAATCTTAGTGATATGGGCTACAAAACACTGTCTAAATATTATCAAGATCTAATGCCTGATGGATCCAGTTCCCCTGTATCACCGAATTCAGGCTGGAAAGTTAGTCGATTTGCTTCAAATTCTACAGAAACAGATGCGGCTGGAGTGGTTGTTGTCAAGGATTTTGTTTCTAGAGCGGTTGTGGCACAATTTAGGGCCCATACTAGTCCTATATCTGCGCTATGTTTTGATCAGAGTGGAACACTTCTAGTTACAGCCTCAATTCATGGTAATAACATCAACATATTTCGAATTATGCCTTCCTACTCAAAGAAAGGATCGGGTTCTCAAAGCAATGATTGGAGTTGTTCTCATGTGCACCTTTACAAGCTCCACCGTGGCATGACATCCGCAGTAATACAAGATATTTGTTTTAGTCATTACAGTCAGTGGGTTGCCGTCATTTCCTCCAAGGGAACTTGTCATATTTTTGTCCTTTCCCCTTTTGGTGGTGAGACAGTTCTTAAGATACACAATCAGGACACAGAAGGACCTGTTCTTTTGCCGGTTTTTCCTCTACCATGGTGGTTCACTCCACATTTTACTGTAAACCAGCATCAACAGCTTTGCCACCCACCCCAACCTCCTGCTTTTCTTTCTGTGGTTAGCAGAATAAAAAATGTTAATGCCGGATGGCTTAATACGGTTAGTAATGTTTCATCTTCTGCAGCAGGGAAAGTCTCAGTTCCATCTGGTGCTGTTTCTGCTGTCTTTCATAGTTCTGTTCCTCCTGATTCGCACAATGCATACGCAAAAGTTCATGCCATGGAACACTTGCTGGTTTATACTCCTTCTGGTCACTTAATTCAGTATAACCTACTATCGTCATTGATGGCAGAACCAAATGAAACTGCTTCAAGAACAGCTCAAGTTCCTTCACCACAGATACAAGAAGAAGATTTACGAGTGAAAGTGGAACCTGTTCAATGGTGGGATGTCTGTAGAAGATATGATTGGCAAGAAAAAGAGGTTTCTATATCAGGGAGTACACCTGGTGGACTGGAAACTGCTGAAATGATATTGGATGTTTCAAATTGTGAAAATTATAGTGTTGGGAATGATGATTCCGTAAAACTTAATCAGGATTGTCACGTCTCAAATGCAGAGGTGCATATAAACTCCGGGAGGATACCAATTTGGCAGAAATCTGAGGTGTCTTTCTTTGTGATGGGTTCTTTTGAAACTGGAGAGCTGAATAAATGTGAACTTTTAACCAATGGGGAGATTGAAATAGAGGATATTCCTGTTAATGAGGTTGAAATAAGACAGAAGGTTTTGTTGCCCGTCCTTGATCATTTCCACAAAATTCAGTCCACTTGGGGTGACAGAGGCATTGTTCTGGGAAGATGCTCTAGCTCTTCATCTGATTCACATGCAACTGAAGAGAAGTTGTCAGAAGATGCTGCGATTTCCCATCCGAAGTTAACTGTACCTGGCTTTGTGGGAAAAACATATGTTGAAATGTTAGGTGGCAGCATACAGTGGGTGGGTCAGACAACAATGGTGGCAGGCACGGCCGTGGTAGATGGTGGCAGCAACAGACAGTTGTTTGACAAAAATGAGCAGAGGTCTGGATATAATCAAGTTTCAGTAGGAGCCTCAAATTTCTCTGATGGTATAGCTACAAAGGTTAAATCATCAGAACATGGAAAAGTCAGTGACAATTTCAATTCAAGTTTTAGTGGTTCAGATATGAATATGCATGTTACTTGTGAGGAGTCAATACGTGACTCGCCAGACTATGATCAATTTTTTCAAGAGGGTTATTGTAAAGCATCAGTTGACTGTCATGAATCAGCAGAAGTTACTACTGATGTGGATTGTAGCAGTCCCTCTGGCAGGGAGAAATCTGATGAAGATGGTGATAATGATGACATGCTTGGTGATATATTTGACTTCTCCGAGGAAGAGTTTATAGAGTGGAGGAAGGAAAGAAACCAAGATTATGAAATTGCTCGTTAG
Protein sequence

>Msa0127420

MKKQGKNNNVSKSNGFVPSSFKFISSCIKTASSGVRTAGASVAASISGDGTDRKDQVLWACFDRLELGLSSFKRVLLLGYSNGFQVLDVEDASNIRELVSKRDDPVSFLQMQPLPAKAEGCEGFRASHPLLLVVACDKSKIPGTVQNVRDGHNEAQAENIINSATTVRFYSLRSHTYVHALRFRSTVYMVRCSPQIVAVGLATQIYCFDALTLENKFSVLTYPVPQLGGQGTVGVNIGYGPMAVGPRWLAYASNNPLLLNTSRLSPQSPTPPAVSPSTSPSSGNLVARYAMESSKHLASGLINLSDMGYKTLSKYYQDLMPDGSSSPVSPNSGWKVSRFASNSTETDAAGVVVVKDFVSRAVVAQFRAHTSPISALCFDQSGTLLVTASIHGNNINIFRIMPSYSKKGSGSQSNDWSCSHVHLYKLHRGMTSAVIQDICFSHYSQWVAVISSKGTCHIFVLSPFGGETVLKIHNQDTEGPVLLPVFPLPWWFTPHFTVNQHQQLCHPPQPPAFLSVVSRIKNVNAGWLNTVSNVSSSAAGKVSVPSGAVSAVFHSSVPPDSHNAYAKVHAMEHLLVYTPSGHLIQYNLLSSLMAEPNETASRTAQVPSPQIQEEDLRVKVEPVQWWDVCRRYDWQEKEVSISGSTPGGLETAEMILDVSNCENYSVGNDDSVKLNQDCHVSNAEVHINSGRIPIWQKSEVSFFVMGSFETGELNKCELLTNGEIEIEDIPVNEVEIRQKVLLPVLDHFHKIQSTWGDRGIVLGRCSSSSSDSHATEEKLSEDAAISHPKLTVPGFVGKTYVEMLGGSIQWVGQTTMVAGTAVVDGGSNRQLFDKNEQRSGYNQVSVGASNFSDGIATKVKSSEHGKVSDNFNSSFSGSDMNMHVTCEESIRDSPDYDQFFQEGYCKASVDCHESAEVTTDVDCSSPSGREKSDEDGDNDDMLGDIFDFSEEEFIEWRKERNQDYEIAR*