Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166120 | XP_013468129.1 | 92.683 | 82 | 6 | 0 | 1 | 82 | 1 | 82 | 4.30e-48 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166120 | A0A072VKL0 | 92.683 | 82 | 6 | 0 | 1 | 82 | 1 | 82 | 2.06e-48 | 157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008410 | Msa0166120 | 0.800765 | 1.235965e-48 | -8.615850e-47 |
| Msa0064350 | Msa0166120 | 0.803686 | 3.096386e-49 | -8.615850e-47 |
| Msa0166120 | Msa0967370 | 0.815979 | 7.003650e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166120 | MtrunA17_Chr1g0180431 | 92.683 | 82 | 6 | 0 | 1 | 82 | 1 | 82 | 3.96e-52 | 157 |
| Msa0166120 | MtrunA17_Chr7g0264791 | 61.429 | 70 | 27 | 0 | 13 | 82 | 13 | 82 | 3.10e-21 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166120 | AT5G03460.1 | 53.933 | 89 | 34 | 3 | 1 | 82 | 1 | 89 | 3.26e-27 | 95.1 |
Find 32 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGTTACTACTCAGTAATT+TGG | 0.210341 | 1_4:-47110076 | None:intergenic |
| GGGAAAATCTATGCGGCTTT+TGG | 0.275103 | 1_4:+47109083 | Msa0166120:CDS |
| ATCGATTATTCATCACAAAA+TGG | 0.285304 | 1_4:+47108799 | Msa0166120:exon |
| GTAACTTCTATTATAAATAT+TGG | 0.301494 | 1_4:+47109969 | Msa0166120:three_prime_UTR |
| TATAATACAAATTGGTAGTT+TGG | 0.302534 | 1_4:+47110029 | Msa0166120:three_prime_UTR |
| TGCTTGACATCTACACTTCC+AGG | 0.321651 | 1_4:-47109852 | None:intergenic |
| AGATCGTTTATAATACAAAT+TGG | 0.359263 | 1_4:+47110021 | Msa0166120:three_prime_UTR |
| GATGTCAAGCAGGATTAATC+TGG | 0.359971 | 1_4:+47109864 | Msa0166120:exon |
| ATAGGTTTGCTTGGTTTGTT+TGG | 0.366801 | 1_4:+47108922 | Msa0166120:intron |
| GTATTGTTTGAAGGCTTGAT+TGG | 0.390160 | 1_4:-47109146 | None:intergenic |
| TCTACACTTCCAGGTTTAGT+AGG | 0.414150 | 1_4:-47109843 | None:intergenic |
| CATGCTGGAGGAGCCCTCTC+TGG | 0.417215 | 1_4:-47109122 | None:intergenic |
| TACATCAAGGTTTGATTGAA+AGG | 0.446685 | 1_4:+47109898 | Msa0166120:three_prime_UTR |
| TTATTAATAGTATTGTTTGA+AGG | 0.448328 | 1_4:-47109155 | None:intergenic |
| CCTACAGAACCTACTAAACC+TGG | 0.487175 | 1_4:+47109834 | Msa0166120:CDS |
| GAGGGAGAAAGTTAACGATT+GGG | 0.501202 | 1_4:-47108961 | None:intergenic |
| CCAGGTTTAGTAGGTTCTGT+AGG | 0.502249 | 1_4:-47109834 | None:intergenic |
| AGAGGGAGAAAGTTAACGAT+TGG | 0.504291 | 1_4:-47108962 | None:intergenic |
| TAGCAGGACGGGGCAAATGT+TGG | 0.521837 | 1_4:+47109804 | Msa0166120:intron |
| ATGTCAAGCAGGATTAATCT+GGG | 0.534833 | 1_4:+47109865 | Msa0166120:exon |
| TCAATCAAACCTTGATGTAG+AGG | 0.546537 | 1_4:-47109894 | None:intergenic |
| TTAGAAAATCGTAGAGAAGA+GGG | 0.549105 | 1_4:-47108979 | None:intergenic |
| GAAGGCTTGATTGGACATGC+TGG | 0.554550 | 1_4:-47109137 | None:intergenic |
| TTAGTAGGTTCTGTAGGAGA+TGG | 0.555725 | 1_4:-47109828 | None:intergenic |
| ATTAGAAAATCGTAGAGAAG+AGG | 0.561560 | 1_4:-47108980 | None:intergenic |
| GGGGTAGCTCCTCTACATCA+AGG | 0.578877 | 1_4:+47109885 | Msa0166120:three_prime_UTR |
| TGGAAGTGTAGATGTCAAGC+AGG | 0.579376 | 1_4:+47109854 | Msa0166120:CDS |
| GGAGTATAGAAAACCAGAGA+GGG | 0.622440 | 1_4:+47109109 | Msa0166120:CDS |
| ACGATTGGGACGAGAAAGAG+AGG | 0.630172 | 1_4:-47108947 | None:intergenic |
| GGCTTGATTGGACATGCTGG+AGG | 0.694736 | 1_4:-47109134 | None:intergenic |
| TGTCAAGCAGGATTAATCTG+GGG | 0.713429 | 1_4:+47109866 | Msa0166120:exon |
| GGGAGTATAGAAAACCAGAG+AGG | 0.717755 | 1_4:+47109108 | Msa0166120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACGAAATTTAATTATTTTTT+TGG | + | chr1_4:47108898-47108917 | Msa0166120:intron | 10.0% |
| !!! | TTTAATTATTTTTTTGGTAT+AGG | + | chr1_4:47108904-47108923 | Msa0166120:intron | 10.0% |
| !!! | ACGAAATTTAATTATTTTTT+TGG | + | chr1_4:47108898-47108917 | Msa0166120:intron | 10.0% |
| !!! | TTTAATTATTTTTTTGGTAT+AGG | + | chr1_4:47108904-47108923 | Msa0166120:intron | 10.0% |
| !! | AAAATTGAAAAGAAAAATCA+TGG | - | chr1_4:47108855-47108874 | None:intergenic | 15.0% |
| !!! | AAAATAATGATAATGATTAG+TGG | - | chr1_4:47109022-47109041 | None:intergenic | 15.0% |
| !! | TTATTAATAGTATTGTTTGA+AGG | - | chr1_4:47109158-47109177 | None:intergenic | 15.0% |
| !! | GTAACTTCTATTATAAATAT+TGG | + | chr1_4:47109969-47109988 | Msa0166120:three_prime_UTR | 15.0% |
| !! | AAAATTGAAAAGAAAAATCA+TGG | - | chr1_4:47108855-47108874 | None:intergenic | 15.0% |
| !!! | AAAATAATGATAATGATTAG+TGG | - | chr1_4:47109022-47109041 | None:intergenic | 15.0% |
| !! | TTATTAATAGTATTGTTTGA+AGG | - | chr1_4:47109158-47109177 | None:intergenic | 15.0% |
| !! | GTAACTTCTATTATAAATAT+TGG | + | chr1_4:47109969-47109988 | Msa0166120:three_prime_UTR | 15.0% |
| !!! | TAATTTTGAATCAAAACACA+GGG | - | chr1_4:47108713-47108732 | None:intergenic | 20.0% |
| !! | TAAAGATGTATTCTGTATAA+AGG | + | chr1_4:47109559-47109578 | Msa0166120:intron | 20.0% |
| !! | AGATCGTTTATAATACAAAT+TGG | + | chr1_4:47110021-47110040 | Msa0166120:three_prime_UTR | 20.0% |
| !!! | TATAATACAAATTGGTAGTT+TGG | + | chr1_4:47110029-47110048 | Msa0166120:three_prime_UTR | 20.0% |
| !!! | TAATTTTGAATCAAAACACA+GGG | - | chr1_4:47108713-47108732 | None:intergenic | 20.0% |
| !! | TAAAGATGTATTCTGTATAA+AGG | + | chr1_4:47109559-47109578 | Msa0166120:intron | 20.0% |
| !! | AGATCGTTTATAATACAAAT+TGG | + | chr1_4:47110021-47110040 | Msa0166120:three_prime_UTR | 20.0% |
| !!! | TATAATACAAATTGGTAGTT+TGG | + | chr1_4:47110029-47110048 | Msa0166120:three_prime_UTR | 20.0% |
| !! | GTAATTTTGAATCAAAACAC+AGG | - | chr1_4:47108714-47108733 | None:intergenic | 25.0% |
| ! | ATCGATTATTCATCACAAAA+TGG | + | chr1_4:47108799-47108818 | Msa0166120:exon | 25.0% |
| !! | ATCCTAATTTTTGTGTTTTC+AGG | + | chr1_4:47109061-47109080 | Msa0166120:intron | 25.0% |
| !! | TCCTAATTTTTGTGTTTTCA+GGG | + | chr1_4:47109062-47109081 | Msa0166120:intron | 25.0% |
| !!! | AGAGATAGTTAACTGTTTTT+TGG | + | chr1_4:47109347-47109366 | Msa0166120:intron | 25.0% |
| ! | ATTACTTACTATCCAAGTTA+AGG | + | chr1_4:47109449-47109468 | Msa0166120:intron | 25.0% |
| ! | AAGTTAAGGTTACTATTCAA+GGG | + | chr1_4:47109463-47109482 | Msa0166120:intron | 25.0% |
| !! | TACAGAATACATCTTTAAGA+AGG | - | chr1_4:47109556-47109575 | None:intergenic | 25.0% |
| ! | AAAAACATGATCACATCTAA+TGG | + | chr1_4:47109937-47109956 | Msa0166120:three_prime_UTR | 25.0% |
| !! | GTAATTTTGAATCAAAACAC+AGG | - | chr1_4:47108714-47108733 | None:intergenic | 25.0% |
| ! | ATCGATTATTCATCACAAAA+TGG | + | chr1_4:47108799-47108818 | Msa0166120:exon | 25.0% |
| !! | ATCCTAATTTTTGTGTTTTC+AGG | + | chr1_4:47109061-47109080 | Msa0166120:intron | 25.0% |
| !! | TCCTAATTTTTGTGTTTTCA+GGG | + | chr1_4:47109062-47109081 | Msa0166120:intron | 25.0% |
| !!! | AGAGATAGTTAACTGTTTTT+TGG | + | chr1_4:47109347-47109366 | Msa0166120:intron | 25.0% |
| ! | ATTACTTACTATCCAAGTTA+AGG | + | chr1_4:47109449-47109468 | Msa0166120:intron | 25.0% |
| ! | AAGTTAAGGTTACTATTCAA+GGG | + | chr1_4:47109463-47109482 | Msa0166120:intron | 25.0% |
| !! | TACAGAATACATCTTTAAGA+AGG | - | chr1_4:47109556-47109575 | None:intergenic | 25.0% |
| ! | AAAAACATGATCACATCTAA+TGG | + | chr1_4:47109937-47109956 | Msa0166120:three_prime_UTR | 25.0% |
| !!! | TTTTTTGGTATAGGTTTGCT+TGG | + | chr1_4:47108913-47108932 | Msa0166120:intron | 30.0% |
| TTAGAAAATCGTAGAGAAGA+GGG | - | chr1_4:47108982-47109001 | None:intergenic | 30.0% | |
| ATTAGAAAATCGTAGAGAAG+AGG | - | chr1_4:47108983-47109002 | None:intergenic | 30.0% | |
| ! | TCTTCTCTACGATTTTCTAA+TGG | + | chr1_4:47108982-47109001 | Msa0166120:CDS | 30.0% |
| ! | CCTAATTTTTGTGTTTTCAG+GGG | + | chr1_4:47109063-47109082 | Msa0166120:intron | 30.0% |
| !!! | ACTGTTTTTTGGAATAGTGT+TGG | + | chr1_4:47109358-47109377 | Msa0166120:intron | 30.0% |
| TCTGTGCAACTAAAAGAAAA+GGG | - | chr1_4:47109413-47109432 | None:intergenic | 30.0% | |
| ATCTGTGCAACTAAAAGAAA+AGG | - | chr1_4:47109414-47109433 | None:intergenic | 30.0% | |
| CTTGAATAGTAACCTTAACT+TGG | - | chr1_4:47109464-47109483 | None:intergenic | 30.0% | |
| CAAGTTAAGGTTACTATTCA+AGG | + | chr1_4:47109462-47109481 | Msa0166120:intron | 30.0% | |
| ACCAATTTCAATGTTATAGC+AGG | + | chr1_4:47109788-47109807 | Msa0166120:intron | 30.0% | |
| TCCTGCTATAACATTGAAAT+TGG | - | chr1_4:47109792-47109811 | None:intergenic | 30.0% | |
| ATTTCAATGTTATAGCAGGA+CGG | + | chr1_4:47109792-47109811 | Msa0166120:intron | 30.0% | |
| TACATCAAGGTTTGATTGAA+AGG | + | chr1_4:47109898-47109917 | Msa0166120:three_prime_UTR | 30.0% | |
| TCAGTTACTACTCAGTAATT+TGG | - | chr1_4:47110079-47110098 | None:intergenic | 30.0% | |
| !!! | TTTTTTGGTATAGGTTTGCT+TGG | + | chr1_4:47108913-47108932 | Msa0166120:intron | 30.0% |
| TTAGAAAATCGTAGAGAAGA+GGG | - | chr1_4:47108982-47109001 | None:intergenic | 30.0% | |
| ATTAGAAAATCGTAGAGAAG+AGG | - | chr1_4:47108983-47109002 | None:intergenic | 30.0% | |
| ! | TCTTCTCTACGATTTTCTAA+TGG | + | chr1_4:47108982-47109001 | Msa0166120:CDS | 30.0% |
| ! | CCTAATTTTTGTGTTTTCAG+GGG | + | chr1_4:47109063-47109082 | Msa0166120:intron | 30.0% |
| !!! | ACTGTTTTTTGGAATAGTGT+TGG | + | chr1_4:47109358-47109377 | Msa0166120:intron | 30.0% |
| TCTGTGCAACTAAAAGAAAA+GGG | - | chr1_4:47109413-47109432 | None:intergenic | 30.0% | |
| ATCTGTGCAACTAAAAGAAA+AGG | - | chr1_4:47109414-47109433 | None:intergenic | 30.0% | |
| CTTGAATAGTAACCTTAACT+TGG | - | chr1_4:47109464-47109483 | None:intergenic | 30.0% | |
| CAAGTTAAGGTTACTATTCA+AGG | + | chr1_4:47109462-47109481 | Msa0166120:intron | 30.0% | |
| ACCAATTTCAATGTTATAGC+AGG | + | chr1_4:47109788-47109807 | Msa0166120:intron | 30.0% | |
| TCCTGCTATAACATTGAAAT+TGG | - | chr1_4:47109792-47109811 | None:intergenic | 30.0% | |
| ATTTCAATGTTATAGCAGGA+CGG | + | chr1_4:47109792-47109811 | Msa0166120:intron | 30.0% | |
| TACATCAAGGTTTGATTGAA+AGG | + | chr1_4:47109898-47109917 | Msa0166120:three_prime_UTR | 30.0% | |
| TCAGTTACTACTCAGTAATT+TGG | - | chr1_4:47110079-47110098 | None:intergenic | 30.0% | |
| !! | ATAGGTTTGCTTGGTTTGTT+TGG | + | chr1_4:47108922-47108941 | Msa0166120:intron | 35.0% |
| CCCCTGAAAACACAAAAATT+AGG | - | chr1_4:47109066-47109085 | None:intergenic | 35.0% | |
| !! | TTTTCAGGGGAAAATCTATG+CGG | + | chr1_4:47109076-47109095 | Msa0166120:intron | 35.0% |
| GTATTGTTTGAAGGCTTGAT+TGG | - | chr1_4:47109149-47109168 | None:intergenic | 35.0% | |
| ACAACCAGATATTGATCCTT+TGG | + | chr1_4:47109595-47109614 | Msa0166120:intron | 35.0% | |
| ACAACCAAAGGATCAATATC+TGG | - | chr1_4:47109602-47109621 | None:intergenic | 35.0% | |
| CAAAACTCAACAACAACCAA+AGG | - | chr1_4:47109614-47109633 | None:intergenic | 35.0% | |
| !! | AAGTGCGTGGATTATGTTTT+GGG | + | chr1_4:47109643-47109662 | Msa0166120:intron | 35.0% |
| GCAGTGAATAATATCTGTGT+TGG | + | chr1_4:47109682-47109701 | Msa0166120:intron | 35.0% | |
| GTGAATAATATCTGTGTTGG+TGG | + | chr1_4:47109685-47109704 | Msa0166120:intron | 35.0% | |
| TTTCAATGTTATAGCAGGAC+GGG | + | chr1_4:47109793-47109812 | Msa0166120:intron | 35.0% | |
| ATGTCAAGCAGGATTAATCT+GGG | + | chr1_4:47109865-47109884 | Msa0166120:exon | 35.0% | |
| TCAATCAAACCTTGATGTAG+AGG | - | chr1_4:47109897-47109916 | None:intergenic | 35.0% | |
| !! | ATAGGTTTGCTTGGTTTGTT+TGG | + | chr1_4:47108922-47108941 | Msa0166120:intron | 35.0% |
| CCCCTGAAAACACAAAAATT+AGG | - | chr1_4:47109066-47109085 | None:intergenic | 35.0% | |
| !! | TTTTCAGGGGAAAATCTATG+CGG | + | chr1_4:47109076-47109095 | Msa0166120:intron | 35.0% |
| GTATTGTTTGAAGGCTTGAT+TGG | - | chr1_4:47109149-47109168 | None:intergenic | 35.0% | |
| ACAACCAGATATTGATCCTT+TGG | + | chr1_4:47109595-47109614 | Msa0166120:intron | 35.0% | |
| ACAACCAAAGGATCAATATC+TGG | - | chr1_4:47109602-47109621 | None:intergenic | 35.0% | |
| CAAAACTCAACAACAACCAA+AGG | - | chr1_4:47109614-47109633 | None:intergenic | 35.0% | |
| !! | AAGTGCGTGGATTATGTTTT+GGG | + | chr1_4:47109643-47109662 | Msa0166120:intron | 35.0% |
| GCAGTGAATAATATCTGTGT+TGG | + | chr1_4:47109682-47109701 | Msa0166120:intron | 35.0% | |
| GTGAATAATATCTGTGTTGG+TGG | + | chr1_4:47109685-47109704 | Msa0166120:intron | 35.0% | |
| TTTCAATGTTATAGCAGGAC+GGG | + | chr1_4:47109793-47109812 | Msa0166120:intron | 35.0% | |
| ATGTCAAGCAGGATTAATCT+GGG | + | chr1_4:47109865-47109884 | Msa0166120:exon | 35.0% | |
| TCAATCAAACCTTGATGTAG+AGG | - | chr1_4:47109897-47109916 | None:intergenic | 35.0% | |
| GAGGGAGAAAGTTAACGATT+GGG | - | chr1_4:47108964-47108983 | None:intergenic | 40.0% | |
| AGAGGGAGAAAGTTAACGAT+TGG | - | chr1_4:47108965-47108984 | None:intergenic | 40.0% | |
| ! | AAATCTATGCGGCTTTTGGT+TGG | + | chr1_4:47109087-47109106 | Msa0166120:CDS | 40.0% |
| !! | AATCTATGCGGCTTTTGGTT+GGG | + | chr1_4:47109088-47109107 | Msa0166120:CDS | 40.0% |
| GGAGTATAGAAAACCAGAGA+GGG | + | chr1_4:47109109-47109128 | Msa0166120:CDS | 40.0% | |
| CTCACTTCAGTATTCAGTTC+AGG | - | chr1_4:47109272-47109291 | None:intergenic | 40.0% | |
| !! | TGGTTGTTGTTGAGTTTTGC+TGG | + | chr1_4:47109615-47109634 | Msa0166120:intron | 40.0% |
| AACATAATCCACGCACTTGT+TGG | - | chr1_4:47109641-47109660 | None:intergenic | 40.0% | |
| !! | CAAGTGCGTGGATTATGTTT+TGG | + | chr1_4:47109642-47109661 | Msa0166120:intron | 40.0% |
| TTCAATGTTATAGCAGGACG+GGG | + | chr1_4:47109794-47109813 | Msa0166120:intron | 40.0% | |
| TTAGTAGGTTCTGTAGGAGA+TGG | - | chr1_4:47109831-47109850 | None:intergenic | 40.0% | |
| TCTACACTTCCAGGTTTAGT+AGG | - | chr1_4:47109846-47109865 | None:intergenic | 40.0% | |
| GATGTCAAGCAGGATTAATC+TGG | + | chr1_4:47109864-47109883 | Msa0166120:exon | 40.0% | |
| TGTCAAGCAGGATTAATCTG+GGG | + | chr1_4:47109866-47109885 | Msa0166120:exon | 40.0% | |
| GAGGGAGAAAGTTAACGATT+GGG | - | chr1_4:47108964-47108983 | None:intergenic | 40.0% | |
| AGAGGGAGAAAGTTAACGAT+TGG | - | chr1_4:47108965-47108984 | None:intergenic | 40.0% | |
| ! | AAATCTATGCGGCTTTTGGT+TGG | + | chr1_4:47109087-47109106 | Msa0166120:CDS | 40.0% |
| !! | AATCTATGCGGCTTTTGGTT+GGG | + | chr1_4:47109088-47109107 | Msa0166120:CDS | 40.0% |
| GGAGTATAGAAAACCAGAGA+GGG | + | chr1_4:47109109-47109128 | Msa0166120:CDS | 40.0% | |
| CTCACTTCAGTATTCAGTTC+AGG | - | chr1_4:47109272-47109291 | None:intergenic | 40.0% | |
| !! | TGGTTGTTGTTGAGTTTTGC+TGG | + | chr1_4:47109615-47109634 | Msa0166120:intron | 40.0% |
| AACATAATCCACGCACTTGT+TGG | - | chr1_4:47109641-47109660 | None:intergenic | 40.0% | |
| !! | CAAGTGCGTGGATTATGTTT+TGG | + | chr1_4:47109642-47109661 | Msa0166120:intron | 40.0% |
| TTCAATGTTATAGCAGGACG+GGG | + | chr1_4:47109794-47109813 | Msa0166120:intron | 40.0% | |
| TTAGTAGGTTCTGTAGGAGA+TGG | - | chr1_4:47109831-47109850 | None:intergenic | 40.0% | |
| TCTACACTTCCAGGTTTAGT+AGG | - | chr1_4:47109846-47109865 | None:intergenic | 40.0% | |
| GATGTCAAGCAGGATTAATC+TGG | + | chr1_4:47109864-47109883 | Msa0166120:exon | 40.0% | |
| TGTCAAGCAGGATTAATCTG+GGG | + | chr1_4:47109866-47109885 | Msa0166120:exon | 40.0% | |
| ! | GGGAAAATCTATGCGGCTTT+TGG | + | chr1_4:47109083-47109102 | Msa0166120:CDS | 45.0% |
| ! | GGGAGTATAGAAAACCAGAG+AGG | + | chr1_4:47109108-47109127 | Msa0166120:CDS | 45.0% |
| CCAGGTTTAGTAGGTTCTGT+AGG | - | chr1_4:47109837-47109856 | None:intergenic | 45.0% | |
| CCTACAGAACCTACTAAACC+TGG | + | chr1_4:47109834-47109853 | Msa0166120:CDS | 45.0% | |
| TGCTTGACATCTACACTTCC+AGG | - | chr1_4:47109855-47109874 | None:intergenic | 45.0% | |
| ! | TGGAAGTGTAGATGTCAAGC+AGG | + | chr1_4:47109854-47109873 | Msa0166120:CDS | 45.0% |
| ! | GGGAAAATCTATGCGGCTTT+TGG | + | chr1_4:47109083-47109102 | Msa0166120:CDS | 45.0% |
| ! | GGGAGTATAGAAAACCAGAG+AGG | + | chr1_4:47109108-47109127 | Msa0166120:CDS | 45.0% |
| CCAGGTTTAGTAGGTTCTGT+AGG | - | chr1_4:47109837-47109856 | None:intergenic | 45.0% | |
| CCTACAGAACCTACTAAACC+TGG | + | chr1_4:47109834-47109853 | Msa0166120:CDS | 45.0% | |
| TGCTTGACATCTACACTTCC+AGG | - | chr1_4:47109855-47109874 | None:intergenic | 45.0% | |
| ! | TGGAAGTGTAGATGTCAAGC+AGG | + | chr1_4:47109854-47109873 | Msa0166120:CDS | 45.0% |
| ACGATTGGGACGAGAAAGAG+AGG | - | chr1_4:47108950-47108969 | None:intergenic | 50.0% | |
| GAAGGCTTGATTGGACATGC+TGG | - | chr1_4:47109140-47109159 | None:intergenic | 50.0% | |
| ACGATTGGGACGAGAAAGAG+AGG | - | chr1_4:47108950-47108969 | None:intergenic | 50.0% | |
| GAAGGCTTGATTGGACATGC+TGG | - | chr1_4:47109140-47109159 | None:intergenic | 50.0% | |
| GGCTTGATTGGACATGCTGG+AGG | - | chr1_4:47109137-47109156 | None:intergenic | 55.0% | |
| TTTGCTGGCCAACAAGTGCG+TGG | + | chr1_4:47109630-47109649 | Msa0166120:intron | 55.0% | |
| TAGCAGGACGGGGCAAATGT+TGG | + | chr1_4:47109804-47109823 | Msa0166120:intron | 55.0% | |
| GGGGTAGCTCCTCTACATCA+AGG | + | chr1_4:47109885-47109904 | Msa0166120:three_prime_UTR | 55.0% | |
| GGCTTGATTGGACATGCTGG+AGG | - | chr1_4:47109137-47109156 | None:intergenic | 55.0% | |
| TTTGCTGGCCAACAAGTGCG+TGG | + | chr1_4:47109630-47109649 | Msa0166120:intron | 55.0% | |
| TAGCAGGACGGGGCAAATGT+TGG | + | chr1_4:47109804-47109823 | Msa0166120:intron | 55.0% | |
| GGGGTAGCTCCTCTACATCA+AGG | + | chr1_4:47109885-47109904 | Msa0166120:three_prime_UTR | 55.0% | |
| CATGCTGGAGGAGCCCTCTC+TGG | - | chr1_4:47109125-47109144 | None:intergenic | 65.0% | |
| CATGCTGGAGGAGCCCTCTC+TGG | - | chr1_4:47109125-47109144 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 47108709 | 47110145 | 47108709 | ID=Msa0166120;Name=Msa0166120 |
| chr1_4 | mRNA | 47108709 | 47110145 | 47108709 | ID=Msa0166120-mRNA-1;Parent=Msa0166120;Name=Msa0166120-mRNA-1;_AED=0.03;_eAED=0.03;_QI=87|1|1|1|0.25|0.4|5|264|82 |
| chr1_4 | exon | 47108709 | 47108755 | 47108709 | ID=Msa0166120-mRNA-1:exon:13616;Parent=Msa0166120-mRNA-1 |
| chr1_4 | exon | 47108778 | 47108820 | 47108778 | ID=Msa0166120-mRNA-1:exon:13617;Parent=Msa0166120-mRNA-1 |
| chr1_4 | exon | 47108926 | 47109003 | 47108926 | ID=Msa0166120-mRNA-1:exon:13618;Parent=Msa0166120-mRNA-1 |
| chr1_4 | exon | 47109083 | 47109178 | 47109083 | ID=Msa0166120-mRNA-1:exon:13619;Parent=Msa0166120-mRNA-1 |
| chr1_4 | exon | 47109810 | 47110145 | 47109810 | ID=Msa0166120-mRNA-1:exon:13620;Parent=Msa0166120-mRNA-1 |
| chr1_4 | five_prime_UTR | 47108709 | 47108755 | 47108709 | ID=Msa0166120-mRNA-1:five_prime_utr;Parent=Msa0166120-mRNA-1 |
| chr1_4 | five_prime_UTR | 47108778 | 47108817 | 47108778 | ID=Msa0166120-mRNA-1:five_prime_utr;Parent=Msa0166120-mRNA-1 |
| chr1_4 | CDS | 47108818 | 47108820 | 47108818 | ID=Msa0166120-mRNA-1:cds;Parent=Msa0166120-mRNA-1 |
| chr1_4 | CDS | 47108926 | 47109003 | 47108926 | ID=Msa0166120-mRNA-1:cds;Parent=Msa0166120-mRNA-1 |
| chr1_4 | CDS | 47109083 | 47109178 | 47109083 | ID=Msa0166120-mRNA-1:cds;Parent=Msa0166120-mRNA-1 |
| chr1_4 | CDS | 47109810 | 47109881 | 47109810 | ID=Msa0166120-mRNA-1:cds;Parent=Msa0166120-mRNA-1 |
| chr1_4 | three_prime_UTR | 47109882 | 47110145 | 47109882 | ID=Msa0166120-mRNA-1:three_prime_utr;Parent=Msa0166120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
