AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0967370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 38 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCACCGCTTCTAATTC+TGG 0.183017 6_3:-96862707 Msa0967370:intron
CCCTCCTGTGTTGTTCAAAT+TGG 0.242473 6_3:-96861794 Msa0967370:CDS
TGTTATTCCTGACTTATGTT+AGG 0.274319 6_3:-96858365 Msa0967370:three_prime_UTR
GAACAACACAGGAGGGTTCT+TGG 0.333889 6_3:+96861801 None:intergenic
CTAATAACTACTCTTCTTCT+TGG 0.335583 6_3:+96858464 None:intergenic
AATCGTGCGGAAGGCTTCTC+AGG 0.375841 6_3:-96858564 Msa0967370:CDS
TAACTTTCATTTAGTGTTAG+TGG 0.382427 6_3:-96858392 Msa0967370:three_prime_UTR
GAAATAAGTGGGACGAAGAA+TGG 0.404264 6_3:-96858492 Msa0967370:exon
AACCCACAGGATTGTTCTGC+TGG 0.412188 6_3:-96858605 Msa0967370:intron
GTTATTCCTGACTTATGTTA+GGG 0.421578 6_3:-96858364 Msa0967370:three_prime_UTR
CACTTATTTCATCAGCTCAT+GGG 0.431495 6_3:+96858505 None:intergenic
CCACTTATTTCATCAGCTCA+TGG 0.432843 6_3:+96858504 None:intergenic
ACACACACGACACACTCTAC+AGG 0.462066 6_3:-96862750 Msa0967370:five_prime_UTR
CTTGCCTTACGAACAACAGC+AGG 0.491565 6_3:+96858728 None:intergenic
AACTTTCATTTAGTGTTAGT+GGG 0.493935 6_3:-96858391 Msa0967370:three_prime_UTR
AAATAAGTGGGACGAAGAAT+GGG 0.497020 6_3:-96858491 Msa0967370:exon
AGCATTCCCTAACATAAGTC+AGG 0.505561 6_3:+96858358 None:intergenic
TCTGCTGGGAGGAATTCATA+TGG 0.515557 6_3:-96858590 Msa0967370:CDS
AACAATTTGACAAACTTCAA+AGG 0.542380 6_3:+96859585 None:intergenic
CCATGAGCTGATGAAATAAG+TGG 0.557576 6_3:-96858504 Msa0967370:exon
TCAGGTGAATATTAATAATG+AGG 0.567120 6_3:-96858546 Msa0967370:CDS
GGAACCAGAATTAGAAGCGG+TGG 0.588450 6_3:+96862703 None:intergenic
CACACACGACACACTCTACA+GGG 0.589002 6_3:-96862749 Msa0967370:five_prime_UTR
ACCCACAGGATTGTTCTGCT+GGG 0.592865 6_3:-96858604 Msa0967370:intron
ATGTTAGGGAATGCTCTCCA+TGG 0.593182 6_3:-96858350 Msa0967370:three_prime_UTR
GCCAATTTGAACAACACAGG+AGG 0.601516 6_3:+96861793 None:intergenic
ATATGGCATAATCGTGCGGA+AGG 0.607012 6_3:-96858573 Msa0967370:CDS
ACATTAATCAGAAATTGCTA+AGG 0.622225 6_3:-96859155 Msa0967370:intron
AATTTGACAAACTTCAAAGG+AGG 0.629694 6_3:+96859588 None:intergenic
CCAATTTGAACAACACAGGA+GGG 0.634346 6_3:+96861794 None:intergenic
CACAGGATTGTTCTGCTGGG+AGG 0.638267 6_3:-96858601 Msa0967370:intron
GGTGAATATTAATAATGAGG+TGG 0.643388 6_3:-96858543 Msa0967370:CDS
CATGAGCTGATGAAATAAGT+GGG 0.665728 6_3:-96858503 Msa0967370:exon
ATTCATATGGCATAATCGTG+CGG 0.678389 6_3:-96858577 Msa0967370:CDS
AAGTGGGACGAAGAATGGGA+TGG 0.681218 6_3:-96858487 Msa0967370:three_prime_UTR
AGTGCCAATTTGAACAACAC+AGG 0.682213 6_3:+96861790 None:intergenic
AAAGGAACCAGAATTAGAAG+CGG 0.693268 6_3:+96862700 None:intergenic
TTGCCTTACGAACAACAGCA+GGG 0.694424 6_3:+96858729 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAAATCTCTATAAAAA+TGG + chr6_3:96858641-96858660 None:intergenic 10.0%
!! ATCTAAAAAAACTAATTTAA+AGG + chr6_3:96858717-96858736 None:intergenic 10.0%
!!! TTTTTTTGTTTTTTTGTTTT+TGG - chr6_3:96858843-96858862 Msa0967370:intron 10.0%
!!! TTTTTTGTTTTTTTGTTTTT+GGG - chr6_3:96858844-96858863 Msa0967370:intron 10.0%
!!! TTTTTTTTTCTTCTTTAAAT+AGG - chr6_3:96860043-96860062 Msa0967370:intron 10.0%
!! TACTTAAGTAAATTTAAATT+TGG + chr6_3:96860543-96860562 None:intergenic 10.0%
!!! ATGAATTTTATATAATCTTA+TGG - chr6_3:96860620-96860639 Msa0967370:intron 10.0%
!!! ACTATTCTTTTTTTTTTTTT+GGG + chr6_3:96862590-96862609 None:intergenic 10.0%
!!! TACTATTCTTTTTTTTTTTT+TGG + chr6_3:96862591-96862610 None:intergenic 10.0%
!!! TCGTTTTTTTTTTCAATTAT+TGG - chr6_3:96858797-96858816 Msa0967370:intron 15.0%
!! AAAGGAAAAAAGAATTATAT+TGG + chr6_3:96859411-96859430 None:intergenic 15.0%
!!! TATCATCATTTTTAACTTTT+CGG - chr6_3:96859521-96859540 Msa0967370:intron 15.0%
!! TAATTATATCTATAGTAACA+TGG - chr6_3:96859689-96859708 Msa0967370:intron 15.0%
!! ATTTAAATTTGGAAAAACAA+AGG + chr6_3:96860532-96860551 None:intergenic 15.0%
!! TATTTGCACTTAAATTAATT+TGG - chr6_3:96861054-96861073 Msa0967370:intron 15.0%
!! ATTTGCACTTAAATTAATTT+GGG - chr6_3:96861055-96861074 Msa0967370:intron 15.0%
!! AAAAAACAGAAAGAAAAAAA+AGG + chr6_3:96861304-96861323 None:intergenic 15.0%
!! CTAATATAAATCATAACAAA+TGG + chr6_3:96861573-96861592 None:intergenic 15.0%
!! AAAAAAAAAAAAAAAGGATG+AGG + chr6_3:96861796-96861815 None:intergenic 15.0%
!! AAAATAATAGAGAATGAAAT+GGG + chr6_3:96862148-96862167 None:intergenic 15.0%
!! TAAACAAATAAGAAGTAAAA+GGG + chr6_3:96862234-96862253 None:intergenic 15.0%
!! TTAAACAAATAAGAAGTAAA+AGG + chr6_3:96862235-96862254 None:intergenic 15.0%
!!! TTTGCATTTTTTCAATTTTC+AGG - chr6_3:96858408-96858427 Msa0967370:three_prime_UTR 20.0%
!!! TCAATATGTTCTGTAATTTT+TGG - chr6_3:96858585-96858604 Msa0967370:CDS 20.0%
!!! TTCTGTAATTTTTGGATATT+AGG - chr6_3:96858593-96858612 Msa0967370:CDS 20.0%
!!! TCTGTAATTTTTGGATATTA+GGG - chr6_3:96858594-96858613 Msa0967370:CDS 20.0%
!!! TTTTTTTGTTTTTGGGATTA+GGG - chr6_3:96858851-96858870 Msa0967370:intron 20.0%
!! ACTTTATTGTGAAATTAGTT+TGG - chr6_3:96858960-96858979 Msa0967370:intron 20.0%
!!! CTTTATTGTGAAATTAGTTT+GGG - chr6_3:96858961-96858980 Msa0967370:intron 20.0%
!! ATTAAAAACGAAAAAAGACA+AGG + chr6_3:96859105-96859124 None:intergenic 20.0%
!! AGCATATTATTACAACATTA+CGG + chr6_3:96859303-96859322 None:intergenic 20.0%
!! AAGTAGTAATGATTAATGAA+GGG - chr6_3:96859478-96859497 Msa0967370:intron 20.0%
!! TTCTTCTTTAAATAGGAAAT+TGG - chr6_3:96860050-96860069 Msa0967370:intron 20.0%
!!! AGTATTTAAAGTGTGATTTA+AGG - chr6_3:96860559-96860578 Msa0967370:intron 20.0%
!!! ATCTATATTTTACGCATAAT+TGG + chr6_3:96860733-96860752 None:intergenic 20.0%
!! GCTAACTCAAATTAATTTAA+CGG + chr6_3:96860859-96860878 None:intergenic 20.0%
!! AAACATATTATATCTTCACA+TGG + chr6_3:96860926-96860945 None:intergenic 20.0%
!! ATCTAAATCTAAATAACAGA+TGG + chr6_3:96861097-96861116 None:intergenic 20.0%
!!! TGGTTATGTTTATTTTGTTA+TGG - chr6_3:96861205-96861224 Msa0967370:intron 20.0%
!! TGATTAAATAAGAAACGAAA+GGG + chr6_3:96861356-96861375 None:intergenic 20.0%
!! TTGATTAAATAAGAAACGAA+AGG + chr6_3:96861357-96861376 None:intergenic 20.0%
!! ATCAAAACATTAAACAGAAT+TGG - chr6_3:96861372-96861391 Msa0967370:intron 20.0%
!! TTGTATTAATATGTTCTTTG+TGG - chr6_3:96861516-96861535 Msa0967370:intron 20.0%
!! TCTTTGTGGTTAAATTAATT+TGG - chr6_3:96861530-96861549 Msa0967370:intron 20.0%
!! CTTTGTGGTTAAATTAATTT+GGG - chr6_3:96861531-96861550 Msa0967370:intron 20.0%
!!! TTTGTGGTTAAATTAATTTG+GGG - chr6_3:96861532-96861551 Msa0967370:intron 20.0%
!! TAAATTGGTTATGTTTATCT+TGG - chr6_3:96861684-96861703 Msa0967370:intron 20.0%
!! TAGAAAACATAGAATGAAAT+GGG + chr6_3:96861737-96861756 None:intergenic 20.0%
!! ATAGAAAACATAGAATGAAA+TGG + chr6_3:96861738-96861757 None:intergenic 20.0%
!! GAAAATAATAGAGAATGAAA+TGG + chr6_3:96862149-96862168 None:intergenic 20.0%
!! AATTCATTCTGCAATTTTAG+AGG - chr6_3:96858677-96858696 Msa0967370:intron 25.0%
!!! GTTTTTTTGTTTTTGGGATT+AGG - chr6_3:96858850-96858869 Msa0967370:intron 25.0%
! AGGGTGAGATTAATTTATTA+CGG + chr6_3:96859134-96859153 None:intergenic 25.0%
! TCATAGCAAATTCTGTTTAA+TGG + chr6_3:96859173-96859192 None:intergenic 25.0%
! GAAGTAGTAATGATTAATGA+AGG - chr6_3:96859477-96859496 Msa0967370:intron 25.0%
! AGTAGTAATGATTAATGAAG+GGG - chr6_3:96859479-96859498 Msa0967370:intron 25.0%
!!! TTTTAACTTTTCGGTATAGT+AGG - chr6_3:96859530-96859549 Msa0967370:intron 25.0%
! TACATCTAAATTGAGCAATT+TGG + chr6_3:96859612-96859631 None:intergenic 25.0%
! TAAAAAAATGAAGGAAGAAG+TGG - chr6_3:96860139-96860158 Msa0967370:intron 25.0%
!!! AACTTTTATGGTATTGGATA+AGG + chr6_3:96860245-96860264 None:intergenic 25.0%
!! ATGGTAAACTTTTATGGTAT+TGG + chr6_3:96860251-96860270 None:intergenic 25.0%
! AAAACAAAGGAAATTTGAAG+TGG + chr6_3:96860519-96860538 None:intergenic 25.0%
!!! CTATGCTTTTAAAATTAGCA+GGG - chr6_3:96860782-96860801 Msa0967370:intron 25.0%
! AAAACCTAAATCATAACAGA+TGG + chr6_3:96860893-96860912 None:intergenic 25.0%
!! AGGTTGCATTTTCATAAAAT+AGG + chr6_3:96861156-96861175 None:intergenic 25.0%
! AAAACAATAGAGAATGACAT+TGG + chr6_3:96861245-96861264 None:intergenic 25.0%
! AGGGTAAGATTATATTAACA+CGG + chr6_3:96861337-96861356 None:intergenic 25.0%
! AACAATTTGACAAACTTCAA+AGG + chr6_3:96861445-96861464 None:intergenic 25.0%
! GTGTTAATACACACATAAAT+TGG - chr6_3:96861669-96861688 Msa0967370:intron 25.0%
! AGACCAAATAAGAAACAAAA+GGG + chr6_3:96861850-96861869 None:intergenic 25.0%
! TAGACCAAATAAGAAACAAA+AGG + chr6_3:96861851-96861870 None:intergenic 25.0%
! ACATTAATCAGAAATTGCTA+AGG - chr6_3:96861872-96861891 Msa0967370:intron 25.0%
! TCTTTGCAGTGAAATTAATT+TGG - chr6_3:96861991-96862010 Msa0967370:intron 25.0%
! CTTTGCAGTGAAATTAATTT+GGG - chr6_3:96861992-96862011 Msa0967370:intron 25.0%
! GAGCTTGCATTTAATAAAAT+AGG + chr6_3:96862067-96862086 None:intergenic 25.0%
!!! GTTGTCTTCTATTTTGTTTT+TGG - chr6_3:96862172-96862191 Msa0967370:intron 25.0%
! TCAGGTGAATATTAATAATG+AGG - chr6_3:96862481-96862500 Msa0967370:intron 25.0%
! TAACTTTCATTTAGTGTTAG+TGG - chr6_3:96862635-96862654 Msa0967370:intron 25.0%
! AACTTTCATTTAGTGTTAGT+GGG - chr6_3:96862636-96862655 Msa0967370:intron 25.0%
GACAAAGAAAAAGGAAGAAA+AGG + chr6_3:96858348-96858367 None:intergenic 30.0%
!! TTCTGCAATTTTAGAGGATT+AGG - chr6_3:96858683-96858702 Msa0967370:intron 30.0%
!! TCTGCAATTTTAGAGGATTA+GGG - chr6_3:96858684-96858703 Msa0967370:intron 30.0%
ATTAAATTTCCCAAGTATGG+CGG + chr6_3:96859016-96859035 None:intergenic 30.0%
TGGATTAAATTTCCCAAGTA+TGG + chr6_3:96859019-96859038 None:intergenic 30.0%
GAAAATAACAGAGAATGCAA+TGG + chr6_3:96859039-96859058 None:intergenic 30.0%
!!! CTTGTCTTCTGTTTTGATTT+TGG - chr6_3:96859063-96859082 Msa0967370:intron 30.0%
TGGTCAAATAAGAAACGAAA+GGG + chr6_3:96859153-96859172 None:intergenic 30.0%
ATGGTCAAATAAGAAACGAA+AGG + chr6_3:96859154-96859173 None:intergenic 30.0%
!! TCGCTTTTACACTTACATAT+AGG - chr6_3:96859439-96859458 Msa0967370:intron 30.0%
! CGCTTTTACACTTACATATA+GGG - chr6_3:96859440-96859459 Msa0967370:intron 30.0%
ATTGTGTTGAGTCGTAAAAT+CGG - chr6_3:96859720-96859739 Msa0967370:intron 30.0%
AGAAAGAAAGAAGAGTTACA+AGG - chr6_3:96859956-96859975 Msa0967370:intron 30.0%
!!! AGGAAATTGGATTTTTCAAG+TGG - chr6_3:96860063-96860082 Msa0967370:intron 30.0%
TAAGGTGTGTTTGATCAATT+AGG + chr6_3:96860227-96860246 None:intergenic 30.0%
! TAGCACATGGTAAACTTTTA+TGG + chr6_3:96860257-96860276 None:intergenic 30.0%
!!! TAGATGAGGTGAGAATTTTT+TGG + chr6_3:96860346-96860365 None:intergenic 30.0%
! TTTTACGCATAATTGGTAAG+CGG + chr6_3:96860726-96860745 None:intergenic 30.0%
!! CCTGCTAATTTTAAAAGCAT+AGG + chr6_3:96860784-96860803 None:intergenic 30.0%
!!! CCTATGCTTTTAAAATTAGC+AGG - chr6_3:96860781-96860800 Msa0967370:intron 30.0%
TCTTCCATCTGTTATGATTT+AGG - chr6_3:96860886-96860905 Msa0967370:intron 30.0%
CTGCAAAGAACAATAAAACA+CGG + chr6_3:96860973-96860992 None:intergenic 30.0%
TTTATTGTTCTTTGCAGTGT+CGG - chr6_3:96860976-96860995 Msa0967370:intron 30.0%
! ATGCTGTTCTCTATTGTTTT+TGG - chr6_3:96861267-96861286 Msa0967370:intron 30.0%
AATTTGACAAACTTCAAAGG+AGG + chr6_3:96861442-96861461 None:intergenic 30.0%
! TTGACTTTTAAACCATGTGA+AGG - chr6_3:96861596-96861615 Msa0967370:intron 30.0%
AAACGAATTATACCTTCACA+TGG + chr6_3:96861611-96861630 None:intergenic 30.0%
! AGGTAGCATTTTCATAAAAC+AGG + chr6_3:96861640-96861659 None:intergenic 30.0%
TGTATTAACACTCAATCAAG+AGG + chr6_3:96861660-96861679 None:intergenic 30.0%
TTGGTATTGTTGCCATAATT+GGG - chr6_3:96861703-96861722 Msa0967370:intron 30.0%
!! TCACCCTTTTGTTTCTTATT+TGG - chr6_3:96861844-96861863 Msa0967370:exon 30.0%
GTGTTAATATGCACATATCT+TGG - chr6_3:96862095-96862114 Msa0967370:intron 30.0%
!! AGGGTGAGTTTATTTTCATA+CGG + chr6_3:96862215-96862234 None:intergenic 30.0%
TGAAATCTCAACAGTTAATG+AGG - chr6_3:96862329-96862348 Msa0967370:intron 30.0%
GGTGAATATTAATAATGAGG+TGG - chr6_3:96862484-96862503 Msa0967370:intron 30.0%
CTAATAACTACTCTTCTTCT+TGG + chr6_3:96862566-96862585 None:intergenic 30.0%
TGTTATTCCTGACTTATGTT+AGG - chr6_3:96862662-96862681 Msa0967370:intron 30.0%
GTTATTCCTGACTTATGTTA+GGG - chr6_3:96862663-96862682 Msa0967370:intron 30.0%
!! AAGTACAGTTTTATACACCA+TGG + chr6_3:96862697-96862716 None:intergenic 30.0%
AAAGGAACCAGAATTAGAAG+CGG + chr6_3:96858330-96858349 None:intergenic 35.0%
!!! AACTTTTTTCGCTGTGTTCA+AGG - chr6_3:96858458-96858477 Msa0967370:three_prime_UTR 35.0%
! AAGGTATTCTCTTCCTTGTT+CGG - chr6_3:96858477-96858496 Msa0967370:three_prime_UTR 35.0%
AATCTGAAAAGATCCGAACA+AGG + chr6_3:96858493-96858512 None:intergenic 35.0%
! TGTTCGGATCTTTTCAGATT+TGG - chr6_3:96858493-96858512 Msa0967370:exon 35.0%
! GTTCGGATCTTTTCAGATTT+GGG - chr6_3:96858494-96858513 Msa0967370:exon 35.0%
AGGGTTTCAAACCTTTGAAT+TGG - chr6_3:96858613-96858632 Msa0967370:intron 35.0%
GGGTTTCAAACCTTTGAATT+GGG - chr6_3:96858614-96858633 Msa0967370:intron 35.0%
GGTTTCAAACCTTTGAATTG+GGG - chr6_3:96858615-96858634 Msa0967370:intron 35.0%
TAAAAATGGCCCCAATTCAA+AGG + chr6_3:96858627-96858646 None:intergenic 35.0%
!! CTGCAATTTTAGAGGATTAG+GGG - chr6_3:96858685-96858704 Msa0967370:intron 35.0%
!!! CTGTTTTGATTTTGGCTGTT+TGG - chr6_3:96859071-96859090 Msa0967370:intron 35.0%
TTGTTTGACATGTATCGTAC+AGG + chr6_3:96859383-96859402 None:intergenic 35.0%
GTAAAAGCGAGCAGAAAAAA+AGG + chr6_3:96859429-96859448 None:intergenic 35.0%
! TAACTTTTCGGTATAGTAGG+TGG - chr6_3:96859533-96859552 Msa0967370:intron 35.0%
GTATAGTAGGTGGATGAATT+AGG - chr6_3:96859543-96859562 Msa0967370:intron 35.0%
GGATGAATTAGGTGAAAAAC+TGG - chr6_3:96859554-96859573 Msa0967370:intron 35.0%
GAAAGAAGAGTTACAAGGAT+CGG - chr6_3:96859961-96859980 Msa0967370:intron 35.0%
AAAGAAGAGTTACAAGGATC+GGG - chr6_3:96859962-96859981 Msa0967370:intron 35.0%
ATAACCCGTCTTACTCTAAT+GGG - chr6_3:96859992-96860011 Msa0967370:intron 35.0%
GAGGGCTTGTAAAAAAATGA+AGG - chr6_3:96860130-96860149 Msa0967370:intron 35.0%
GAATAGCAAAGAATAGCACA+TGG + chr6_3:96860270-96860289 None:intergenic 35.0%
GTTGATCTATTAGACACACA+AGG + chr6_3:96860295-96860314 None:intergenic 35.0%
!!! TGAGGTGAGAATTTTTTGGA+AGG + chr6_3:96860342-96860361 None:intergenic 35.0%
TGCAAGTGAATGAATAGATG+AGG + chr6_3:96860360-96860379 None:intergenic 35.0%
CTTCCAATCCTTATAGGAAT+CGG + chr6_3:96860384-96860403 None:intergenic 35.0%
TTGACTCTTCCAATCCTTAT+AGG + chr6_3:96860390-96860409 None:intergenic 35.0%
AGGAAAATATGGAAGGAGAA+AGG + chr6_3:96860481-96860500 None:intergenic 35.0%
ATGTCGTAGGAAAATATGGA+AGG + chr6_3:96860488-96860507 None:intergenic 35.0%
GGAAATGTCGTAGGAAAATA+TGG + chr6_3:96860492-96860511 None:intergenic 35.0%
! AAGGAAATTTGAAGTGGAAG+TGG + chr6_3:96860513-96860532 None:intergenic 35.0%
ACTGACATCGCTATATATGA+TGG + chr6_3:96860761-96860780 None:intergenic 35.0%
!!! TTTTAAAATTAGCAGGGTCC+AGG - chr6_3:96860788-96860807 Msa0967370:intron 35.0%
AATCGAATTGTGTCTTCACA+TGG + chr6_3:96861127-96861146 None:intergenic 35.0%
CATATTAGCACTCAATCAAG+AGG + chr6_3:96861176-96861195 None:intergenic 35.0%
GTGCTAATATGCACATAAGT+TGG - chr6_3:96861185-96861204 Msa0967370:intron 35.0%
! TTGCTTGCTAAGCAGAAAAA+AGG - chr6_3:96861463-96861482 Msa0967370:intron 35.0%
CTTGGTATTGTTGCCATAAT+TGG - chr6_3:96861702-96861721 Msa0967370:intron 35.0%
AAAAAAAAAAGGATGAGGCG+AGG + chr6_3:96861791-96861810 None:intergenic 35.0%
TTGGTATTGTTGCCATACTT+GGG - chr6_3:96862114-96862133 Msa0967370:intron 35.0%
TGGGATAAATTTCCCAAGTA+TGG + chr6_3:96862129-96862148 None:intergenic 35.0%
! TTATTTTCATACGGCTGAAG+AGG + chr6_3:96862206-96862225 None:intergenic 35.0%
ATATCAATTTCCAAACCCAC+AGG - chr6_3:96862409-96862428 Msa0967370:intron 35.0%
ATTCATATGGCATAATCGTG+CGG - chr6_3:96862450-96862469 Msa0967370:intron 35.0%
CACTTATTTCATCAGCTCAT+GGG + chr6_3:96862525-96862544 None:intergenic 35.0%
CATGAGCTGATGAAATAAGT+GGG - chr6_3:96862524-96862543 Msa0967370:intron 35.0%
AAATAAGTGGGACGAAGAAT+GGG - chr6_3:96862536-96862555 Msa0967370:intron 35.0%
GGTTAACATGCACTCTTGTT+TGG - chr6_3:96858982-96859001 Msa0967370:intron 40.0%
CCAATTTGAACAACACAGGA+GGG + chr6_3:96859236-96859255 None:intergenic 40.0%
AGTGCCAATTTGAACAACAC+AGG + chr6_3:96859240-96859259 None:intergenic 40.0%
ATCGTACTCATGATCGTTGA+GGG + chr6_3:96859766-96859785 None:intergenic 40.0%
AATCGTACTCATGATCGTTG+AGG + chr6_3:96859767-96859786 None:intergenic 40.0%
ACGAGTTATTCTGTTACGAC+TGG + chr6_3:96859869-96859888 None:intergenic 40.0%
AACAGAATAACTCGTGACGA+TGG - chr6_3:96859874-96859893 Msa0967370:intron 40.0%
TAACTCATCTCCAACCATAG+AGG + chr6_3:96859900-96859919 None:intergenic 40.0%
! ATGACCCTTTTCAGAGGTTA+GGG - chr6_3:96859931-96859950 Msa0967370:intron 40.0%
! CTAACCCTAACCTCTGAAAA+GGG + chr6_3:96859938-96859957 None:intergenic 40.0%
! TCTAACCCTAACCTCTGAAA+AGG + chr6_3:96859939-96859958 None:intergenic 40.0%
GATAACCCGTCTTACTCTAA+TGG - chr6_3:96859991-96860010 Msa0967370:intron 40.0%
TTCTGCCCATTAGAGTAAGA+CGG + chr6_3:96860000-96860019 None:intergenic 40.0%
!! TGTTTGGGAGTTTTGATGAG+AGG - chr6_3:96860111-96860130 Msa0967370:intron 40.0%
!! GTTTGGGAGTTTTGATGAGA+GGG - chr6_3:96860112-96860131 Msa0967370:intron 40.0%
AAAGAATGAAGAGCGAGCTT+TGG - chr6_3:96860162-96860181 Msa0967370:intron 40.0%
AAGAATGAAGAGCGAGCTTT+GGG - chr6_3:96860163-96860182 Msa0967370:intron 40.0%
GGTGTGTTTGATCAATTAGG+AGG + chr6_3:96860224-96860243 None:intergenic 40.0%
! GGTGAGTCACTTTCTGTATA+AGG + chr6_3:96860321-96860340 None:intergenic 40.0%
! ACTTGCAACCGATTCCTATA+AGG - chr6_3:96860373-96860392 Msa0967370:intron 40.0%
! CAACCGATTCCTATAAGGAT+TGG - chr6_3:96860378-96860397 Msa0967370:intron 40.0%
TCGCATGCAATTATGGAAGA+CGG + chr6_3:96860457-96860476 None:intergenic 40.0%
GAAAGGATCGCATGCAATTA+TGG + chr6_3:96860464-96860483 None:intergenic 40.0%
ATAAAACACGGACTCTGACA+CGG + chr6_3:96860961-96860980 None:intergenic 40.0%
TAACTATGAAGCACAGACTC+CGG + chr6_3:96861036-96861055 None:intergenic 40.0%
! GAATGACATTGGCTGAAGTA+TGG + chr6_3:96861234-96861253 None:intergenic 40.0%
TGGGCTGAATTTCCCAATTA+TGG + chr6_3:96861718-96861737 None:intergenic 40.0%
GAAAGAATTGCGTCTTCACA+TGG + chr6_3:96862038-96862057 None:intergenic 40.0%
CTTGGTATTGTTGCCATACT+TGG - chr6_3:96862113-96862132 Msa0967370:intron 40.0%
CCACTTATTTCATCAGCTCA+TGG + chr6_3:96862526-96862545 None:intergenic 40.0%
CCATGAGCTGATGAAATAAG+TGG - chr6_3:96862523-96862542 Msa0967370:intron 40.0%
GAAATAAGTGGGACGAAGAA+TGG - chr6_3:96862535-96862554 Msa0967370:intron 40.0%
AGCATTCCCTAACATAAGTC+AGG + chr6_3:96862672-96862691 None:intergenic 40.0%
GAACGAGCGGACAAAGAAAA+AGG + chr6_3:96858357-96858376 None:intergenic 45.0%
AATAGCGAAGAACGAACGAG+CGG + chr6_3:96858370-96858389 None:intergenic 45.0%
GAAAAAAGTTGTTGCACGCG+CGG + chr6_3:96858448-96858467 None:intergenic 45.0%
! CCCTCCTGTGTTGTTCAAAT+TGG - chr6_3:96859233-96859252 Msa0967370:intron 45.0%
GCCAATTTGAACAACACAGG+AGG + chr6_3:96859237-96859256 None:intergenic 45.0%
TGCTCTTTGTCTCTGCAAGA+TGG - chr6_3:96859319-96859338 Msa0967370:intron 45.0%
TGGAATCACAGAGGATCGAT+TGG + chr6_3:96859849-96859868 None:intergenic 45.0%
TGTTACGACTGGAATCACAG+AGG + chr6_3:96859858-96859877 None:intergenic 45.0%
! GATGACCCTTTTCAGAGGTT+AGG - chr6_3:96859930-96859949 Msa0967370:intron 45.0%
TCTGCCCATTAGAGTAAGAC+GGG + chr6_3:96859999-96860018 None:intergenic 45.0%
! ATGCGCATTATGGCTCTGTT+TGG - chr6_3:96860095-96860114 Msa0967370:intron 45.0%
! TGCGCATTATGGCTCTGTTT+GGG - chr6_3:96860096-96860115 Msa0967370:intron 45.0%
! AAGAGGAAAGAGAGGTGTAG+TGG + chr6_3:96860425-96860444 None:intergenic 45.0%
GAAAGAGGAAGAGGAAAGAG+AGG + chr6_3:96860433-96860452 None:intergenic 45.0%
ATTATGGAAGACGGGGAAAG+AGG + chr6_3:96860448-96860467 None:intergenic 45.0%
GCATGCAATTATGGAAGACG+GGG + chr6_3:96860455-96860474 None:intergenic 45.0%
CGCATGCAATTATGGAAGAC+GGG + chr6_3:96860456-96860475 None:intergenic 45.0%
AGTGGAAGTGGAAATGTCGT+AGG + chr6_3:96860501-96860520 None:intergenic 45.0%
TTCAAGCACAGACTTCGAGA+CGG + chr6_3:96860827-96860846 None:intergenic 45.0%
TTTCCCTGCTGTTGTTCGTA+AGG - chr6_3:96862295-96862314 Msa0967370:intron 45.0%
TTGCCTTACGAACAACAGCA+GGG + chr6_3:96862301-96862320 None:intergenic 45.0%
TCTGCTGGGAGGAATTCATA+TGG - chr6_3:96862437-96862456 Msa0967370:intron 45.0%
ATATGGCATAATCGTGCGGA+AGG - chr6_3:96862454-96862473 Msa0967370:intron 45.0%
ATGTTAGGGAATGCTCTCCA+TGG - chr6_3:96862677-96862696 Msa0967370:intron 45.0%
!! AAAAAAAACTAATTTATAAA+CGG + chr6_3:96860029-96860048 None:intergenic 5.0%
!! GTTAAAAAAAAAAAAAAAAA+AGG + chr6_3:96861802-96861821 None:intergenic 5.0%
ACACACACGACACACTCTAC+AGG - chr6_3:96858277-96858296 Msa0967370:three_prime_UTR 50.0%
CACACACGACACACTCTACA+GGG - chr6_3:96858278-96858297 Msa0967370:three_prime_UTR 50.0%
CTCTCCACCGCTTCTAATTC+TGG - chr6_3:96858320-96858339 Msa0967370:three_prime_UTR 50.0%
GGAACCAGAATTAGAAGCGG+TGG + chr6_3:96858327-96858346 None:intergenic 50.0%
GCATTGTTGCCGCCATACTT+GGG - chr6_3:96859004-96859023 Msa0967370:intron 50.0%
GAACAACACAGGAGGGTTCT+TGG + chr6_3:96859229-96859248 None:intergenic 50.0%
CTCTGCAAGATGGACACCTT+TGG - chr6_3:96859329-96859348 Msa0967370:intron 50.0%
AGCAGCACGCATAATGCCAA+AGG + chr6_3:96859348-96859367 None:intergenic 50.0%
! TTGGCATTATGCGTGCTGCT+AGG - chr6_3:96859348-96859367 Msa0967370:intron 50.0%
GGAGATGAGTTACAGTTCGC+AGG - chr6_3:96859908-96859927 Msa0967370:intron 50.0%
GCTGCATGCAATGCGCATTA+TGG - chr6_3:96860085-96860104 Msa0967370:intron 50.0%
!! ATGAAGAGCGAGCTTTGGGA+AGG - chr6_3:96860167-96860186 Msa0967370:intron 50.0%
!! TGAAGAGCGAGCTTTGGGAA+GGG - chr6_3:96860168-96860187 Msa0967370:intron 50.0%
CTTGCCTTACGAACAACAGC+AGG + chr6_3:96862302-96862321 None:intergenic 50.0%
GCAGAACAATCCTGTGGGTT+TGG + chr6_3:96862422-96862441 None:intergenic 50.0%
AACCCACAGGATTGTTCTGC+TGG - chr6_3:96862422-96862441 Msa0967370:intron 50.0%
ACCCACAGGATTGTTCTGCT+GGG - chr6_3:96862423-96862442 Msa0967370:intron 50.0%
TCCCAGCAGAACAATCCTGT+GGG + chr6_3:96862427-96862446 None:intergenic 50.0%
AAGTGGGACGAAGAATGGGA+TGG - chr6_3:96862540-96862559 Msa0967370:intron 50.0%
GGCATTGTTGCCGCCATACT+TGG - chr6_3:96859003-96859022 Msa0967370:intron 55.0%
! TATGCGTGCTGCTAGGTGTC+TGG - chr6_3:96859355-96859374 Msa0967370:intron 55.0%
ACTCGTGACGATGGCCTCTA+TGG - chr6_3:96859883-96859902 Msa0967370:intron 55.0%
GTGACGATGGCCTCTATGGT+TGG - chr6_3:96859887-96859906 Msa0967370:intron 55.0%
! CGCAGGATGACCCTTTTCAG+AGG - chr6_3:96859925-96859944 Msa0967370:intron 55.0%
GAAGACGGGGAAAGAGGAAG+AGG + chr6_3:96860442-96860461 None:intergenic 55.0%
AGACTTCGAGACGGACACCT+GGG + chr6_3:96860818-96860837 None:intergenic 55.0%
CACGGACACCTGACACGATA+CGG + chr6_3:96861005-96861024 None:intergenic 55.0%
CTCCCAGCAGAACAATCCTG+TGG + chr6_3:96862428-96862447 None:intergenic 55.0%
CACAGGATTGTTCTGCTGGG+AGG - chr6_3:96862426-96862445 Msa0967370:intron 55.0%
AATCGTGCGGAAGGCTTCTC+AGG - chr6_3:96862463-96862482 Msa0967370:intron 55.0%
!! AGAGCGAGCTTTGGGAAGGG+AGG - chr6_3:96860171-96860190 Msa0967370:intron 60.0%
GACTTCGAGACGGACACCTG+GGG + chr6_3:96860817-96860836 None:intergenic 60.0%
CAGACTTCGAGACGGACACC+TGG + chr6_3:96860819-96860838 None:intergenic 60.0%
GTCGGAGTCCGTATCGTGTC+AGG - chr6_3:96860994-96861013 Msa0967370:intron 60.0%
! AGGTGTCCGTGTCGCTGTGC+CGG - chr6_3:96861014-96861033 Msa0967370:intron 65.0%
CAGACTCCGGCACAGCGACA+CGG + chr6_3:96861023-96861042 None:intergenic 65.0%
AGCAGGGTCCAGGTGTCCCC+AGG - chr6_3:96860798-96860817 Msa0967370:intron 70.0%
GACGGACACCTGGGGACACC+TGG + chr6_3:96860809-96860828 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 96858275 96862774 96858275 ID=Msa0967370;Name=Msa0967370
chr6_3 mRNA 96858275 96862774 96858275 ID=Msa0967370-mRNA-1;Parent=Msa0967370;Name=Msa0967370-mRNA-1;_AED=0.24;_eAED=0.24;_QI=125|0.83|0.85|1|0.66|0.71|7|233|138
chr6_3 exon 96858275 96858618 96858275 ID=Msa0967370-mRNA-1:exon:17968;Parent=Msa0967370-mRNA-1
chr6_3 exon 96858742 96858782 96858742 ID=Msa0967370-mRNA-1:exon:17967;Parent=Msa0967370-mRNA-1
chr6_3 exon 96859098 96859166 96859098 ID=Msa0967370-mRNA-1:exon:17966;Parent=Msa0967370-mRNA-1
chr6_3 exon 96859559 96859660 96859559 ID=Msa0967370-mRNA-1:exon:17965;Parent=Msa0967370-mRNA-1
chr6_3 exon 96861767 96861868 96861767 ID=Msa0967370-mRNA-1:exon:17964;Parent=Msa0967370-mRNA-1
chr6_3 exon 96862570 96862619 96862570 ID=Msa0967370-mRNA-1:exon:17963;Parent=Msa0967370-mRNA-1
chr6_3 exon 96862708 96862774 96862708 ID=Msa0967370-mRNA-1:exon:17962;Parent=Msa0967370-mRNA-1
chr6_3 five_prime_UTR 96862708 96862774 96862708 ID=Msa0967370-mRNA-1:five_prime_utr;Parent=Msa0967370-mRNA-1
chr6_3 five_prime_UTR 96862570 96862619 96862570 ID=Msa0967370-mRNA-1:five_prime_utr;Parent=Msa0967370-mRNA-1
chr6_3 five_prime_UTR 96861861 96861868 96861861 ID=Msa0967370-mRNA-1:five_prime_utr;Parent=Msa0967370-mRNA-1
chr6_3 CDS 96861767 96861860 96861767 ID=Msa0967370-mRNA-1:cds;Parent=Msa0967370-mRNA-1
chr6_3 CDS 96859559 96859660 96859559 ID=Msa0967370-mRNA-1:cds;Parent=Msa0967370-mRNA-1
chr6_3 CDS 96859098 96859166 96859098 ID=Msa0967370-mRNA-1:cds;Parent=Msa0967370-mRNA-1
chr6_3 CDS 96858742 96858782 96858742 ID=Msa0967370-mRNA-1:cds;Parent=Msa0967370-mRNA-1
chr6_3 CDS 96858508 96858618 96858508 ID=Msa0967370-mRNA-1:cds;Parent=Msa0967370-mRNA-1
chr6_3 three_prime_UTR 96858275 96858507 96858275 ID=Msa0967370-mRNA-1:three_prime_utr;Parent=Msa0967370-mRNA-1
Gene Sequence

>Msa0967370

ATGAAGTGTCGCTCAAAAAACGACAAAAATGAAGTTGCCAAGAACCCTCCTGTGTTGTTCAAATTGGCACTTGCTAAGATGAAAAAAGAAGAAAAATTGGCTTTGCTTCGCTCGAAAGACAACAAAAATGAAGTTGCTAAGAAGCCTCCTTTGAAGTTTGTCAAATTGTTGCTTGCTAAGCAGAAAAAAGGAGAAAAAATTGCTAAGGAGCGTCGTCGCTCAAAAAACATCAAAAATGAAGTTGCTAAGAAGCAAAAAGCAAAAAAATCTATTAAGAGATTGTCGACGACTGTTTTCCCTGCTGTTGATTGTTCTGCTGGGAGGAATTCATATGGCATAATCGTGCGGAAGGCTTCTCAGGTGAATATTAATAATGAGGTGGCTGCTGATATGAAAACCCATGAGCTGATGAAATAA

Protein sequence

>Msa0967370

MKCRSKNDKNEVAKNPPVLFKLALAKMKKEEKLALLRSKDNKNEVAKKPPLKFVKLLLAKQKKGEKIAKERRRSKNIKNEVAKKQKAKKSIKRLSTTVFPAVDCSAGRNSYGIIVRKASQVNINNEVAADMKTHELMK*