AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0008410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 42 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTGCAAGATTAGAATAAT+TGG 0.172795 1_1:+12092150 None:intergenic
CTCTCCACCGCTTCTAATTC+TGG 0.183017 1_1:-12096590 Msa0008410:intron
CCCTCCTGTGTTGTTCAAAT+TGG 0.242473 1_1:-12095684 Msa0008410:CDS
TGTTATTCCTGACTTATGTT+AGG 0.274319 1_1:-12092259 Msa0008410:three_prime_UTR
GAACAACACAGGAGGGTTCT+TGG 0.333889 1_1:+12095691 None:intergenic
CTAATAACTACTCTTCTTCT+TGG 0.335583 1_1:+12092359 None:intergenic
AATCGTGCGGAAGGCTTCTC+AGG 0.373822 1_1:-12092459 Msa0008410:CDS
TAACTTTCATTTAGTGTTAG+TGG 0.382427 1_1:-12092286 Msa0008410:three_prime_UTR
GAAATAAGTGGGACGAAGAA+TGG 0.404264 1_1:-12092387 Msa0008410:exon
GTTATTCCTGACTTATGTTA+GGG 0.421578 1_1:-12092258 Msa0008410:three_prime_UTR
CACTTATTTCATCAGCTCAT+GGG 0.431495 1_1:+12092400 None:intergenic
CCACTTATTTCATCAGCTCA+TGG 0.432843 1_1:+12092399 None:intergenic
GCTGCAAGATTAGAATAATT+GGG 0.462488 1_1:+12092151 None:intergenic
AACCCACAGAATTGTTCTGC+TGG 0.468114 1_1:-12092500 Msa0008410:intron
CTTGCCTTACGAACAACAGC+AGG 0.491565 1_1:+12092623 None:intergenic
AACTTTCATTTAGTGTTAGT+GGG 0.493935 1_1:-12092285 Msa0008410:three_prime_UTR
AAATAAGTGGGACGAAGAAT+GGG 0.497020 1_1:-12092386 Msa0008410:exon
AGCATTCCCTAACATAAGTC+AGG 0.505561 1_1:+12092252 None:intergenic
TCTGCTGGGAGGAATTCATA+TGG 0.515557 1_1:-12092485 Msa0008410:CDS
AACAATTTGACAAACTTCAA+AGG 0.542380 1_1:+12093484 None:intergenic
ACACACACGACACCCTCTAC+AGG 0.544675 1_1:-12096633 Msa0008410:five_prime_UTR
GAATATCTGCAAACCTGTAG+AGG 0.545306 1_1:+12096620 None:intergenic
CCATGAGCTGATGAAATAAG+TGG 0.557576 1_1:-12092399 Msa0008410:exon
TCAGGTGGATATTAATAATG+AGG 0.567120 1_1:-12092441 Msa0008410:CDS
ACCCACAGAATTGTTCTGCT+GGG 0.577622 1_1:-12092499 Msa0008410:intron
GGAACCAGAATTAGAAGCGG+TGG 0.588450 1_1:+12096586 None:intergenic
CGTGCGGAAGGCTTCTCAGG+TGG 0.592001 1_1:-12092456 Msa0008410:CDS
ATGTTAGGGAATGCTCTCCA+TGG 0.593182 1_1:-12092244 Msa0008410:three_prime_UTR
GCCAATTTGAACAACACAGG+AGG 0.601516 1_1:+12095683 None:intergenic
ATATGGCATAATCGTGCGGA+AGG 0.607012 1_1:-12092468 Msa0008410:CDS
AATATCTGCAAACCTGTAGA+GGG 0.614455 1_1:+12096621 None:intergenic
ACATTAATCAGAAATTGCTA+AGG 0.622225 1_1:-12093050 Msa0008410:intron
AATTTGACAAACTTCAAAGG+AGG 0.629694 1_1:+12093487 None:intergenic
CCAATTTGAACAACACAGGA+GGG 0.634346 1_1:+12095684 None:intergenic
CACAGAATTGTTCTGCTGGG+AGG 0.638267 1_1:-12092496 Msa0008410:intron
GGTGGATATTAATAATGAGG+TGG 0.643388 1_1:-12092438 Msa0008410:CDS
CATGAGCTGATGAAATAAGT+GGG 0.665728 1_1:-12092398 Msa0008410:exon
ATTCATATGGCATAATCGTG+CGG 0.678389 1_1:-12092472 Msa0008410:CDS
AAGTGGGACGAAGAATGGGA+TGG 0.681218 1_1:-12092382 Msa0008410:three_prime_UTR
AGTGCCAATTTGAACAACAC+AGG 0.682213 1_1:+12095680 None:intergenic
AAAGGAACCAGAATTAGAAG+CGG 0.693268 1_1:+12096583 None:intergenic
TTGCCTTACGAACAACAGCA+GGG 0.694424 1_1:+12092624 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG + chr1_1:12095688-12095707 None:intergenic 0.0%
!!! ATTTAAAATCTCTATAAAAA+TGG + chr1_1:12092543-12092562 None:intergenic 10.0%
!! ATCTAAAAAAACTAATTTAA+AGG + chr1_1:12092619-12092638 None:intergenic 10.0%
!!! TTTTTTTTTCTTTCAATTAT+TGG - chr1_1:12092703-12092722 Msa0008410:intron 10.0%
!!! TTTTTTTTTCTTCTTTAAAT+AGG - chr1_1:12093935-12093954 Msa0008410:intron 10.0%
!! TACTTAAGTAAATTTAAATT+TGG + chr1_1:12094429-12094448 None:intergenic 10.0%
!!! ATGAATTTTATATAATCTTA+TGG - chr1_1:12094506-12094525 Msa0008410:intron 10.0%
!!! CTATTCTTTTTTTTTTTTTT+GGG + chr1_1:12096480-12096499 None:intergenic 10.0%
!!! ACTATTCTTTTTTTTTTTTT+TGG + chr1_1:12096481-12096500 None:intergenic 10.0%
!!! TTTGTTCTGATTTTTTTTTT+TGG - chr1_1:12092738-12092757 Msa0008410:intron 15.0%
!!! TTGTTCTGATTTTTTTTTTT+GGG - chr1_1:12092739-12092758 Msa0008410:intron 15.0%
!! AAAGGAAAAAAGAATTATAT+TGG + chr1_1:12093303-12093322 None:intergenic 15.0%
!!! TATCATCATTTTTAACTTTT+CGG - chr1_1:12093413-12093432 Msa0008410:intron 15.0%
!! TAATTATATCTATAGTAACA+TGG - chr1_1:12093581-12093600 Msa0008410:intron 15.0%
!! ATTTAAATTTGGAAAAACAA+AGG + chr1_1:12094418-12094437 None:intergenic 15.0%
!! TATTTGCACTTAAATTAATT+TGG - chr1_1:12094940-12094959 Msa0008410:intron 15.0%
!! ATTTGCACTTAAATTAATTT+GGG - chr1_1:12094941-12094960 Msa0008410:intron 15.0%
!! AAAAAACAGAAAGAAAAAAA+AGG + chr1_1:12095190-12095209 None:intergenic 15.0%
!! CTAATATAAATCATAACAAA+TGG + chr1_1:12095459-12095478 None:intergenic 15.0%
!! AAAAAAAAAAAAAAAGGATG+AGG + chr1_1:12095683-12095702 None:intergenic 15.0%
!! AAAATAATAGAGAATGAAAT+GGG + chr1_1:12096038-12096057 None:intergenic 15.0%
!! TAAACAAATAAGAAGTAAAA+GGG + chr1_1:12096124-12096143 None:intergenic 15.0%
!! TTAAACAAATAAGAAGTAAA+AGG + chr1_1:12096125-12096144 None:intergenic 15.0%
!!! TTTGCATTTTTTCAATTTTC+AGG - chr1_1:12092310-12092329 Msa0008410:three_prime_UTR 20.0%
!!! TCAATATGTTCTGTAATTTT+TGG - chr1_1:12092487-12092506 Msa0008410:CDS 20.0%
!!! TTCTGTAATTTTTGGATATT+AGG - chr1_1:12092495-12092514 Msa0008410:intron 20.0%
!!! TCTGTAATTTTTGGATATTA+GGG - chr1_1:12092496-12092515 Msa0008410:intron 20.0%
!!! TGATTTTTTTTTTTGGGATT+AGG - chr1_1:12092745-12092764 Msa0008410:intron 20.0%
!!! GATTTTTTTTTTTGGGATTA+GGG - chr1_1:12092746-12092765 Msa0008410:intron 20.0%
!! ACTTTATTGTGAAATTAGTT+TGG - chr1_1:12092855-12092874 Msa0008410:intron 20.0%
!!! CTTTATTGTGAAATTAGTTT+GGG - chr1_1:12092856-12092875 Msa0008410:intron 20.0%
!! ATTAAAAACGAAAAAAGACA+AGG + chr1_1:12093000-12093019 None:intergenic 20.0%
!! TAATCAAATAAGAAACGAAA+GGG + chr1_1:12093048-12093067 None:intergenic 20.0%
!! ATAATCAAATAAGAAACGAA+AGG + chr1_1:12093049-12093068 None:intergenic 20.0%
!! AGCATATTATTACAACATTA+CGG + chr1_1:12093198-12093217 None:intergenic 20.0%
!! AAGTAGTAATGATTAATGAA+GGG - chr1_1:12093370-12093389 Msa0008410:intron 20.0%
!! TTCTTCTTTAAATAGGAAAT+TGG - chr1_1:12093942-12093961 Msa0008410:intron 20.0%
!!! AGTATTTAAAGTGTGATTTA+AGG - chr1_1:12094445-12094464 Msa0008410:intron 20.0%
!!! ATCTATATTTTACGCATAAT+TGG + chr1_1:12094619-12094638 None:intergenic 20.0%
!! GCTAACTCAAATTAATTTAA+CGG + chr1_1:12094745-12094764 None:intergenic 20.0%
!! AAACATATTATATCTTCACA+TGG + chr1_1:12094812-12094831 None:intergenic 20.0%
!! ATCTAAATCTAAATAACAGA+TGG + chr1_1:12094983-12095002 None:intergenic 20.0%
!!! TGGTTATGTTTATTTTGTTA+TGG - chr1_1:12095091-12095110 Msa0008410:intron 20.0%
!! TGATTAAATAAGAAACGAAA+GGG + chr1_1:12095242-12095261 None:intergenic 20.0%
!! TTGATTAAATAAGAAACGAA+AGG + chr1_1:12095243-12095262 None:intergenic 20.0%
!! ATCAAAACATTAAACAGAAT+TGG - chr1_1:12095258-12095277 Msa0008410:intron 20.0%
!! TTGTATTAATATGTTCTTTG+TGG - chr1_1:12095402-12095421 Msa0008410:intron 20.0%
!! TCTTTGTGGTTAAATTAATT+TGG - chr1_1:12095416-12095435 Msa0008410:intron 20.0%
!! CTTTGTGGTTAAATTAATTT+GGG - chr1_1:12095417-12095436 Msa0008410:intron 20.0%
!!! TTTGTGGTTAAATTAATTTG+GGG - chr1_1:12095418-12095437 Msa0008410:intron 20.0%
!! TAAATTGGTTATGTTTATCT+TGG - chr1_1:12095570-12095589 Msa0008410:intron 20.0%
!! AGAAAAACATAGAATGAAAT+GGG + chr1_1:12095623-12095642 None:intergenic 20.0%
!! TAGAAAAACATAGAATGAAA+TGG + chr1_1:12095624-12095643 None:intergenic 20.0%
!! GAAAATAATAGAGAATGAAA+TGG + chr1_1:12096039-12096058 None:intergenic 20.0%
!! AATTCATTCTGCAATTTTAG+AGG - chr1_1:12092579-12092598 Msa0008410:intron 25.0%
! AGGGTGAGATTAATTTATTA+CGG + chr1_1:12093029-12093048 None:intergenic 25.0%
! GAAGTAGTAATGATTAATGA+AGG - chr1_1:12093369-12093388 Msa0008410:intron 25.0%
! AGTAGTAATGATTAATGAAG+GGG - chr1_1:12093371-12093390 Msa0008410:intron 25.0%
!!! TTTTAACTTTTCGGTATAGT+AGG - chr1_1:12093422-12093441 Msa0008410:intron 25.0%
! TACATCTAAATTGAGCAATT+TGG + chr1_1:12093504-12093523 None:intergenic 25.0%
! TAAAAAAATGAAGGAAGAAG+TGG - chr1_1:12094031-12094050 Msa0008410:intron 25.0%
!!! AACTTTTATGGTATTGGATA+AGG + chr1_1:12094137-12094156 None:intergenic 25.0%
!! ATGGTAAACTTTTATGGTAT+TGG + chr1_1:12094143-12094162 None:intergenic 25.0%
! AAAACAAAGGAAATTTGAAG+TGG + chr1_1:12094405-12094424 None:intergenic 25.0%
!!! CTATGCTTTTAAAATTAGCA+GGG - chr1_1:12094668-12094687 Msa0008410:intron 25.0%
! AAAACCTAAATCATAACAGA+TGG + chr1_1:12094779-12094798 None:intergenic 25.0%
!! AGGTTGCATTTTCATAAAAT+AGG + chr1_1:12095042-12095061 None:intergenic 25.0%
! AAAACAATAGAGAATGACAT+TGG + chr1_1:12095131-12095150 None:intergenic 25.0%
! AGGGTAAGATTATATTAACA+CGG + chr1_1:12095223-12095242 None:intergenic 25.0%
! AACAATTTGACAAACTTCAA+AGG + chr1_1:12095331-12095350 None:intergenic 25.0%
! GTGTTAATACACACATAAAT+TGG - chr1_1:12095555-12095574 Msa0008410:intron 25.0%
! AGACCAAATAAGAAACAAAA+GGG + chr1_1:12095740-12095759 None:intergenic 25.0%
! TAGACCAAATAAGAAACAAA+AGG + chr1_1:12095741-12095760 None:intergenic 25.0%
! ACATTAATCAGAAATTGCTA+AGG - chr1_1:12095762-12095781 Msa0008410:intron 25.0%
! TCTTTGCAGTGAAATTAATT+TGG - chr1_1:12095881-12095900 Msa0008410:intron 25.0%
! CTTTGCAGTGAAATTAATTT+GGG - chr1_1:12095882-12095901 Msa0008410:intron 25.0%
! GAGCTTGCATTTAATAAAAT+AGG + chr1_1:12095957-12095976 None:intergenic 25.0%
!!! GTTGTCTTCTATTTTGTTTT+TGG - chr1_1:12096062-12096081 Msa0008410:intron 25.0%
! TAACTTTCATTTAGTGTTAG+TGG - chr1_1:12096526-12096545 Msa0008410:intron 25.0%
! AACTTTCATTTAGTGTTAGT+GGG - chr1_1:12096527-12096546 Msa0008410:intron 25.0%
GACAAAGAAAAAGGAAGAAA+AGG + chr1_1:12092250-12092269 None:intergenic 30.0%
!! TTCTGCAATTTTAGAGGATT+AGG - chr1_1:12092585-12092604 Msa0008410:intron 30.0%
!! TCTGCAATTTTAGAGGATTA+GGG - chr1_1:12092586-12092605 Msa0008410:intron 30.0%
ATTAAATTTCCCAAGTATGG+CGG + chr1_1:12092911-12092930 None:intergenic 30.0%
TGGATTAAATTTCCCAAGTA+TGG + chr1_1:12092914-12092933 None:intergenic 30.0%
GAAAATAACAGAGAATGCAA+TGG + chr1_1:12092934-12092953 None:intergenic 30.0%
!!! CTTGTCTTCTGTTTTGATTT+TGG - chr1_1:12092958-12092977 Msa0008410:intron 30.0%
!! TCGCTTTTACACTTACATAT+AGG - chr1_1:12093331-12093350 Msa0008410:intron 30.0%
! CGCTTTTACACTTACATATA+GGG - chr1_1:12093332-12093351 Msa0008410:intron 30.0%
ATTGTGTTGAGTCGTAAAAT+CGG - chr1_1:12093612-12093631 Msa0008410:intron 30.0%
AGAAAGAAAGAAGAGTTACA+AGG - chr1_1:12093848-12093867 Msa0008410:intron 30.0%
!!! AGGAAATTGGATTTTTCAAG+TGG - chr1_1:12093955-12093974 Msa0008410:intron 30.0%
TAAGGTGTGTTTGATCAATT+AGG + chr1_1:12094119-12094138 None:intergenic 30.0%
! TAGCACATGGTAAACTTTTA+TGG + chr1_1:12094149-12094168 None:intergenic 30.0%
!!! TAGATGAGGTGAGAATTTTT+TGG + chr1_1:12094238-12094257 None:intergenic 30.0%
! TTTTACGCATAATTGGTAAG+CGG + chr1_1:12094612-12094631 None:intergenic 30.0%
!! CCTGCTAATTTTAAAAGCAT+AGG + chr1_1:12094670-12094689 None:intergenic 30.0%
!!! CCTATGCTTTTAAAATTAGC+AGG - chr1_1:12094667-12094686 Msa0008410:intron 30.0%
TCTTCCATCTGTTATGATTT+AGG - chr1_1:12094772-12094791 Msa0008410:intron 30.0%
CTGCAAAGAACAATAAAACA+CGG + chr1_1:12094859-12094878 None:intergenic 30.0%
TTTATTGTTCTTTGCAGTGT+CGG - chr1_1:12094862-12094881 Msa0008410:intron 30.0%
! ATGCTGTTCTCTATTGTTTT+TGG - chr1_1:12095153-12095172 Msa0008410:intron 30.0%
AATTTGACAAACTTCAAAGG+AGG + chr1_1:12095328-12095347 None:intergenic 30.0%
! TTGACTTTTAAACCATGTGA+AGG - chr1_1:12095482-12095501 Msa0008410:intron 30.0%
AAACGAATTATACCTTCACA+TGG + chr1_1:12095497-12095516 None:intergenic 30.0%
! AGGTAGCATTTTCATAAAAC+AGG + chr1_1:12095526-12095545 None:intergenic 30.0%
TGTATTAACACTCAATCAAG+AGG + chr1_1:12095546-12095565 None:intergenic 30.0%
TTGGTATTGTTGCCATAATT+GGG - chr1_1:12095589-12095608 Msa0008410:intron 30.0%
!! TCACCCTTTTGTTTCTTATT+TGG - chr1_1:12095734-12095753 Msa0008410:exon 30.0%
GTGTTAATATGCACATATCT+TGG - chr1_1:12095985-12096004 Msa0008410:intron 30.0%
!! AGGGTGAGTTTATTTTCATA+CGG + chr1_1:12096105-12096124 None:intergenic 30.0%
TGAAATCTCAACAGTTAATG+AGG - chr1_1:12096219-12096238 Msa0008410:intron 30.0%
TCAGGTGGATATTAATAATG+AGG - chr1_1:12096371-12096390 Msa0008410:intron 30.0%
CTAATAACTACTCTTCTTCT+TGG + chr1_1:12096456-12096475 None:intergenic 30.0%
TGTTATTCCTGACTTATGTT+AGG - chr1_1:12096553-12096572 Msa0008410:intron 30.0%
GTTATTCCTGACTTATGTTA+GGG - chr1_1:12096554-12096573 Msa0008410:intron 30.0%
!! AAGTACAGTTTTATACACCA+TGG + chr1_1:12096588-12096607 None:intergenic 30.0%
AATATCTGCAAACCTGTAGA+GGG + chr1_1:12092194-12092213 None:intergenic 35.0%
AAAGGAACCAGAATTAGAAG+CGG + chr1_1:12092232-12092251 None:intergenic 35.0%
!!! AACTTTTTTCGCTGTGTTCA+AGG - chr1_1:12092360-12092379 Msa0008410:three_prime_UTR 35.0%
! AAGGTATTCTCTTCCTTGTT+CGG - chr1_1:12092379-12092398 Msa0008410:three_prime_UTR 35.0%
AATCTGAAAAGATCCGAACA+AGG + chr1_1:12092395-12092414 None:intergenic 35.0%
! TGTTCGGATCTTTTCAGATT+TGG - chr1_1:12092395-12092414 Msa0008410:exon 35.0%
! GTTCGGATCTTTTCAGATTT+GGG - chr1_1:12092396-12092415 Msa0008410:exon 35.0%
AGGGTTTCAAACCTTTGAAT+TGG - chr1_1:12092515-12092534 Msa0008410:intron 35.0%
GGGTTTCAAACCTTTGAATT+GGG - chr1_1:12092516-12092535 Msa0008410:intron 35.0%
GGTTTCAAACCTTTGAATTG+GGG - chr1_1:12092517-12092536 Msa0008410:intron 35.0%
TAAAAATGGCCCCAATTCAA+AGG + chr1_1:12092529-12092548 None:intergenic 35.0%
!! CTGCAATTTTAGAGGATTAG+GGG - chr1_1:12092587-12092606 Msa0008410:intron 35.0%
!!! CTGTTTTGATTTTGGCTGTT+TGG - chr1_1:12092966-12092985 Msa0008410:intron 35.0%
TTGTTTGACATGTATCGTAC+AGG + chr1_1:12093275-12093294 None:intergenic 35.0%
GTAAAAGCGAGCAGAAAAAA+AGG + chr1_1:12093321-12093340 None:intergenic 35.0%
! TAACTTTTCGGTATAGTAGG+TGG - chr1_1:12093425-12093444 Msa0008410:intron 35.0%
GTATAGTAGGTGGATGAATT+AGG - chr1_1:12093435-12093454 Msa0008410:intron 35.0%
GGATGAATTAGGTGAAAAAC+TGG - chr1_1:12093446-12093465 Msa0008410:intron 35.0%
GAAAGAAGAGTTACAAGGAT+CGG - chr1_1:12093853-12093872 Msa0008410:intron 35.0%
AAAGAAGAGTTACAAGGATC+GGG - chr1_1:12093854-12093873 Msa0008410:intron 35.0%
ATAACCCGTCTTACTCTAAT+GGG - chr1_1:12093884-12093903 Msa0008410:intron 35.0%
GAGGGCTTGTAAAAAAATGA+AGG - chr1_1:12094022-12094041 Msa0008410:intron 35.0%
GAATAGCAAAGAATAGCACA+TGG + chr1_1:12094162-12094181 None:intergenic 35.0%
GTTGATCTATTAGACACACA+AGG + chr1_1:12094187-12094206 None:intergenic 35.0%
!!! TGAGGTGAGAATTTTTTGGA+AGG + chr1_1:12094234-12094253 None:intergenic 35.0%
TGCAAGTGAATGAATAGATG+AGG + chr1_1:12094252-12094271 None:intergenic 35.0%
CTTCCAATCCTTATAGGAAT+CGG + chr1_1:12094276-12094295 None:intergenic 35.0%
TTGACTCTTCCAATCCTTAT+AGG + chr1_1:12094282-12094301 None:intergenic 35.0%
AGGAAAATATGGAAGGAGAA+AGG + chr1_1:12094373-12094392 None:intergenic 35.0%
ATGTCGTAGGAAAATATGGA+AGG + chr1_1:12094380-12094399 None:intergenic 35.0%
GGAAATGTCGTAGGAAAATA+TGG + chr1_1:12094384-12094403 None:intergenic 35.0%
! ATTTGAAGTGGAAATGTCGT+AGG + chr1_1:12094393-12094412 None:intergenic 35.0%
ACTGACATCGCTATATATGA+TGG + chr1_1:12094647-12094666 None:intergenic 35.0%
!!! TTTTAAAATTAGCAGGGTCC+AGG - chr1_1:12094674-12094693 Msa0008410:intron 35.0%
AATCGAATTGTGTCTTCACA+TGG + chr1_1:12095013-12095032 None:intergenic 35.0%
CATATTAGCACTCAATCAAG+AGG + chr1_1:12095062-12095081 None:intergenic 35.0%
GTGCTAATATGCACATAAGT+TGG - chr1_1:12095071-12095090 Msa0008410:intron 35.0%
! TTGCTTGCTAAGCAGAAAAA+AGG - chr1_1:12095349-12095368 Msa0008410:intron 35.0%
CTTGGTATTGTTGCCATAAT+TGG - chr1_1:12095588-12095607 Msa0008410:intron 35.0%
AAAAAAAAAAGGATGAGGCG+AGG + chr1_1:12095678-12095697 None:intergenic 35.0%
TTGGTATTGTTGCCATACTT+GGG - chr1_1:12096004-12096023 Msa0008410:intron 35.0%
TGGGATAAATTTCCCAAGTA+TGG + chr1_1:12096019-12096038 None:intergenic 35.0%
! TTATTTTCATACGGCTGAAG+AGG + chr1_1:12096096-12096115 None:intergenic 35.0%
ATTCATATGGCATAATCGTG+CGG - chr1_1:12096340-12096359 Msa0008410:intron 35.0%
GGTGGATATTAATAATGAGG+TGG - chr1_1:12096374-12096393 Msa0008410:intron 35.0%
CACTTATTTCATCAGCTCAT+GGG + chr1_1:12096415-12096434 None:intergenic 35.0%
CATGAGCTGATGAAATAAGT+GGG - chr1_1:12096414-12096433 Msa0008410:intron 35.0%
AAATAAGTGGGACGAAGAAT+GGG - chr1_1:12096426-12096445 Msa0008410:intron 35.0%
GAATATCTGCAAACCTGTAG+AGG + chr1_1:12092195-12092214 None:intergenic 40.0%
GGTTAACATGCACTCTTGTT+TGG - chr1_1:12092877-12092896 Msa0008410:intron 40.0%
CCAATTTGAACAACACAGGA+GGG + chr1_1:12093131-12093150 None:intergenic 40.0%
AGTGCCAATTTGAACAACAC+AGG + chr1_1:12093135-12093154 None:intergenic 40.0%
ATCGTACTCATGATCGTTGA+GGG + chr1_1:12093658-12093677 None:intergenic 40.0%
AATCGTACTCATGATCGTTG+AGG + chr1_1:12093659-12093678 None:intergenic 40.0%
ACGAGTTATTCTGTTACGAC+TGG + chr1_1:12093761-12093780 None:intergenic 40.0%
AACAGAATAACTCGTGACGA+TGG - chr1_1:12093766-12093785 Msa0008410:intron 40.0%
TAACTCATCTCCAACCATAG+AGG + chr1_1:12093792-12093811 None:intergenic 40.0%
! ATGACCCTTTTCAGAGGTTA+GGG - chr1_1:12093823-12093842 Msa0008410:intron 40.0%
! CTAACCCTAACCTCTGAAAA+GGG + chr1_1:12093830-12093849 None:intergenic 40.0%
! TCTAACCCTAACCTCTGAAA+AGG + chr1_1:12093831-12093850 None:intergenic 40.0%
GATAACCCGTCTTACTCTAA+TGG - chr1_1:12093883-12093902 Msa0008410:intron 40.0%
TTCTGCCCATTAGAGTAAGA+CGG + chr1_1:12093892-12093911 None:intergenic 40.0%
!! TGTTTGGGAGTTTTGATGAG+AGG - chr1_1:12094003-12094022 Msa0008410:intron 40.0%
!! GTTTGGGAGTTTTGATGAGA+GGG - chr1_1:12094004-12094023 Msa0008410:intron 40.0%
AAAGAATGAAGAGCGAGCTT+TGG - chr1_1:12094054-12094073 Msa0008410:intron 40.0%
AAGAATGAAGAGCGAGCTTT+GGG - chr1_1:12094055-12094074 Msa0008410:intron 40.0%
GGTGTGTTTGATCAATTAGG+AGG + chr1_1:12094116-12094135 None:intergenic 40.0%
! GGTGAGTCACTTTCTGTATA+AGG + chr1_1:12094213-12094232 None:intergenic 40.0%
! ACTTGCAACCGATTCCTATA+AGG - chr1_1:12094265-12094284 Msa0008410:intron 40.0%
! CAACCGATTCCTATAAGGAT+TGG - chr1_1:12094270-12094289 Msa0008410:intron 40.0%
TCGCATGCAATTATGGAAGA+CGG + chr1_1:12094349-12094368 None:intergenic 40.0%
GAAAGGATCGCATGCAATTA+TGG + chr1_1:12094356-12094375 None:intergenic 40.0%
ATAAAACACGGACTCTGACA+CGG + chr1_1:12094847-12094866 None:intergenic 40.0%
TAACTATGAAGCACAGACTC+CGG + chr1_1:12094922-12094941 None:intergenic 40.0%
! GAATGACATTGGCTGAAGTA+TGG + chr1_1:12095120-12095139 None:intergenic 40.0%
TGGGCTGAATTTCCCAATTA+TGG + chr1_1:12095604-12095623 None:intergenic 40.0%
GAAAGAATTGCGTCTTCACA+TGG + chr1_1:12095928-12095947 None:intergenic 40.0%
CTTGGTATTGTTGCCATACT+TGG - chr1_1:12096003-12096022 Msa0008410:intron 40.0%
CCACTTATTTCATCAGCTCA+TGG + chr1_1:12096416-12096435 None:intergenic 40.0%
CCATGAGCTGATGAAATAAG+TGG - chr1_1:12096413-12096432 Msa0008410:intron 40.0%
GAAATAAGTGGGACGAAGAA+TGG - chr1_1:12096425-12096444 Msa0008410:intron 40.0%
AGCATTCCCTAACATAAGTC+AGG + chr1_1:12096563-12096582 None:intergenic 40.0%
GAACGAGCGGACAAAGAAAA+AGG + chr1_1:12092259-12092278 None:intergenic 45.0%
AATAGCGAAGAACGAACGAG+CGG + chr1_1:12092272-12092291 None:intergenic 45.0%
GAAAAAAGTTGTTGCACGCG+CGG + chr1_1:12092350-12092369 None:intergenic 45.0%
! CCCTCCTGTGTTGTTCAAAT+TGG - chr1_1:12093128-12093147 Msa0008410:intron 45.0%
GCCAATTTGAACAACACAGG+AGG + chr1_1:12093132-12093151 None:intergenic 45.0%
TGCTCTTTGTCTCTGCAAGA+TGG - chr1_1:12093214-12093233 Msa0008410:intron 45.0%
TGGAATCACAGAGGATCGAT+TGG + chr1_1:12093741-12093760 None:intergenic 45.0%
TGTTACGACTGGAATCACAG+AGG + chr1_1:12093750-12093769 None:intergenic 45.0%
! GATGACCCTTTTCAGAGGTT+AGG - chr1_1:12093822-12093841 Msa0008410:intron 45.0%
TCTGCCCATTAGAGTAAGAC+GGG + chr1_1:12093891-12093910 None:intergenic 45.0%
! ATGCGCATTATGGCTCTGTT+TGG - chr1_1:12093987-12094006 Msa0008410:intron 45.0%
! TGCGCATTATGGCTCTGTTT+GGG - chr1_1:12093988-12094007 Msa0008410:intron 45.0%
! AGAGGTGTAGTGGAGAAGAT+AGG + chr1_1:12094307-12094326 None:intergenic 45.0%
! AAGAGGAAAGAGAGGTGTAG+TGG + chr1_1:12094317-12094336 None:intergenic 45.0%
GAAAGAGGAAGAGGAAAGAG+AGG + chr1_1:12094325-12094344 None:intergenic 45.0%
ATTATGGAAGACGGGGAAAG+AGG + chr1_1:12094340-12094359 None:intergenic 45.0%
GCATGCAATTATGGAAGACG+GGG + chr1_1:12094347-12094366 None:intergenic 45.0%
CGCATGCAATTATGGAAGAC+GGG + chr1_1:12094348-12094367 None:intergenic 45.0%
TTCAAGCACAGACTTCGAGA+CGG + chr1_1:12094713-12094732 None:intergenic 45.0%
TTTCCCTGCTGTTGTTCGTA+AGG - chr1_1:12096185-12096204 Msa0008410:intron 45.0%
TTGCCTTACGAACAACAGCA+GGG + chr1_1:12096191-12096210 None:intergenic 45.0%
GCAGAACAATTCTGTGGGTT+TGG + chr1_1:12096312-12096331 None:intergenic 45.0%
AACCCACAGAATTGTTCTGC+TGG - chr1_1:12096312-12096331 Msa0008410:intron 45.0%
ACCCACAGAATTGTTCTGCT+GGG - chr1_1:12096313-12096332 Msa0008410:intron 45.0%
TCCCAGCAGAACAATTCTGT+GGG + chr1_1:12096317-12096336 None:intergenic 45.0%
TCTGCTGGGAGGAATTCATA+TGG - chr1_1:12096327-12096346 Msa0008410:intron 45.0%
ATATGGCATAATCGTGCGGA+AGG - chr1_1:12096344-12096363 Msa0008410:intron 45.0%
ATGTTAGGGAATGCTCTCCA+TGG - chr1_1:12096568-12096587 Msa0008410:intron 45.0%
!! AAAAAAAACTAATTTATAAA+CGG + chr1_1:12093921-12093940 None:intergenic 5.0%
CTCTCCACCGCTTCTAATTC+TGG - chr1_1:12092222-12092241 Msa0008410:three_prime_UTR 50.0%
GGAACCAGAATTAGAAGCGG+TGG + chr1_1:12092229-12092248 None:intergenic 50.0%
GCATTGTTGCCGCCATACTT+GGG - chr1_1:12092899-12092918 Msa0008410:intron 50.0%
GAACAACACAGGAGGGTTCT+TGG + chr1_1:12093124-12093143 None:intergenic 50.0%
CTCTGCAAGATGGACACCTT+TGG - chr1_1:12093224-12093243 Msa0008410:intron 50.0%
CCTAGCACGCATAATGCCAA+AGG + chr1_1:12093243-12093262 None:intergenic 50.0%
CCTTTGGCATTATGCGTGCT+AGG - chr1_1:12093240-12093259 Msa0008410:intron 50.0%
CATTATGCGTGCTAGGTGTC+TGG - chr1_1:12093247-12093266 Msa0008410:intron 50.0%
GGAGATGAGTTACAGTTCGC+AGG - chr1_1:12093800-12093819 Msa0008410:intron 50.0%
GCTGCATGCAATGCGCATTA+TGG - chr1_1:12093977-12093996 Msa0008410:intron 50.0%
!! ATGAAGAGCGAGCTTTGGGA+AGG - chr1_1:12094059-12094078 Msa0008410:intron 50.0%
!! TGAAGAGCGAGCTTTGGGAA+GGG - chr1_1:12094060-12094079 Msa0008410:intron 50.0%
CTTGCCTTACGAACAACAGC+AGG + chr1_1:12096192-12096211 None:intergenic 50.0%
CTCCCAGCAGAACAATTCTG+TGG + chr1_1:12096318-12096337 None:intergenic 50.0%
CACAGAATTGTTCTGCTGGG+AGG - chr1_1:12096316-12096335 Msa0008410:intron 50.0%
AAGTGGGACGAAGAATGGGA+TGG - chr1_1:12096430-12096449 Msa0008410:intron 50.0%
ACACACACGACACCCTCTAC+AGG - chr1_1:12092179-12092198 Msa0008410:three_prime_UTR 55.0%
GGCATTGTTGCCGCCATACT+TGG - chr1_1:12092898-12092917 Msa0008410:intron 55.0%
ACTCGTGACGATGGCCTCTA+TGG - chr1_1:12093775-12093794 Msa0008410:intron 55.0%
GTGACGATGGCCTCTATGGT+TGG - chr1_1:12093779-12093798 Msa0008410:intron 55.0%
! CGCAGGATGACCCTTTTCAG+AGG - chr1_1:12093817-12093836 Msa0008410:intron 55.0%
GAAGACGGGGAAAGAGGAAG+AGG + chr1_1:12094334-12094353 None:intergenic 55.0%
AGACTTCGAGACGGACACCT+GGG + chr1_1:12094704-12094723 None:intergenic 55.0%
CACGGACACCTGACACGATA+CGG + chr1_1:12094891-12094910 None:intergenic 55.0%
AATCGTGCGGAAGGCTTCTC+AGG - chr1_1:12096353-12096372 Msa0008410:intron 55.0%
!! AGAGCGAGCTTTGGGAAGGG+AGG - chr1_1:12094063-12094082 Msa0008410:intron 60.0%
GACTTCGAGACGGACACCTG+GGG + chr1_1:12094703-12094722 None:intergenic 60.0%
CAGACTTCGAGACGGACACC+TGG + chr1_1:12094705-12094724 None:intergenic 60.0%
GTCGGAGTCCGTATCGTGTC+AGG - chr1_1:12094880-12094899 Msa0008410:intron 60.0%
! AGGTGTCCGTGTCGCTGTGC+CGG - chr1_1:12094900-12094919 Msa0008410:intron 65.0%
CAGACTCCGGCACAGCGACA+CGG + chr1_1:12094909-12094928 None:intergenic 65.0%
CGTGCGGAAGGCTTCTCAGG+TGG - chr1_1:12096356-12096375 Msa0008410:intron 65.0%
AGCAGGGTCCAGGTGTCCCC+AGG - chr1_1:12094684-12094703 Msa0008410:intron 70.0%
GACGGACACCTGGGGACACC+TGG + chr1_1:12094695-12094714 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 12092154 12096680 12092154 ID=Msa0008410;Name=Msa0008410
chr1_1 mRNA 12092154 12096680 12092154 ID=Msa0008410-mRNA-1;Parent=Msa0008410;Name=Msa0008410-mRNA-1;_AED=0.23;_eAED=0.23;_QI=148|0.83|0.85|1|0.5|0.57|7|249|138
chr1_1 exon 12092154 12092513 12092154 ID=Msa0008410-mRNA-1:exon:4612;Parent=Msa0008410-mRNA-1
chr1_1 exon 12092637 12092677 12092637 ID=Msa0008410-mRNA-1:exon:4611;Parent=Msa0008410-mRNA-1
chr1_1 exon 12092993 12093061 12092993 ID=Msa0008410-mRNA-1:exon:4610;Parent=Msa0008410-mRNA-1
chr1_1 exon 12093458 12093559 12093458 ID=Msa0008410-mRNA-1:exon:4609;Parent=Msa0008410-mRNA-1
chr1_1 exon 12095657 12095758 12095657 ID=Msa0008410-mRNA-1:exon:4608;Parent=Msa0008410-mRNA-1
chr1_1 exon 12096453 12096502 12096453 ID=Msa0008410-mRNA-1:exon:4607;Parent=Msa0008410-mRNA-1
chr1_1 exon 12096591 12096680 12096591 ID=Msa0008410-mRNA-1:exon:4606;Parent=Msa0008410-mRNA-1
chr1_1 five_prime_UTR 12096591 12096680 12096591 ID=Msa0008410-mRNA-1:five_prime_utr;Parent=Msa0008410-mRNA-1
chr1_1 five_prime_UTR 12096453 12096502 12096453 ID=Msa0008410-mRNA-1:five_prime_utr;Parent=Msa0008410-mRNA-1
chr1_1 five_prime_UTR 12095751 12095758 12095751 ID=Msa0008410-mRNA-1:five_prime_utr;Parent=Msa0008410-mRNA-1
chr1_1 CDS 12095657 12095750 12095657 ID=Msa0008410-mRNA-1:cds;Parent=Msa0008410-mRNA-1
chr1_1 CDS 12093458 12093559 12093458 ID=Msa0008410-mRNA-1:cds;Parent=Msa0008410-mRNA-1
chr1_1 CDS 12092993 12093061 12092993 ID=Msa0008410-mRNA-1:cds;Parent=Msa0008410-mRNA-1
chr1_1 CDS 12092637 12092677 12092637 ID=Msa0008410-mRNA-1:cds;Parent=Msa0008410-mRNA-1
chr1_1 CDS 12092403 12092513 12092403 ID=Msa0008410-mRNA-1:cds;Parent=Msa0008410-mRNA-1
chr1_1 three_prime_UTR 12092154 12092402 12092154 ID=Msa0008410-mRNA-1:three_prime_utr;Parent=Msa0008410-mRNA-1
Gene Sequence

>Msa0008410

ATGAAGTGTCGCTCAAAAAACGACAAAAATGAAGTTGCCAAGAACCCTCCTGTGTTGTTCAAATTGGCACTTGCTAAGATGAAAAAAGAAGAAAAATTGGCTTTGCTTCGCTCGAAAGACAACAAAAATGAAGTTGCTAAGAAGCCTCCTTTGAAGTTTGTCAAATTGTTGCTTGCTAAGCAGAAAAAAGGAGAAAAAATTGCTAAGGAGCGTCGTCGCTCAAAAAACATCAAAAATGAAGTTGCTAAGAAGCAAAAAGCAAAAAAATCTATTAAGAGATTGTCGACGACTGTTTTCCCTGCTGTTAATTGTTCTGCTGGGAGGAATTCATATGGCATAATCGTGCGGAAGGCTTCTCAGGTGGATATTAATAATGAGGTGGCTACTGATATGAAAACCCATGAGCTGATGAAATAA

Protein sequence

>Msa0008410

MKCRSKNDKNEVAKNPPVLFKLALAKMKKEEKLALLRSKDNKNEVAKKPPLKFVKLLLAKQKKGEKIAKERRRSKNIKNEVAKKQKAKKSIKRLSTTVFPAVNCSAGRNSYGIIVRKASQVDINNEVATDMKTHELMK*