AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0167110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167110 MtrunA17_Chr1g0182811 97.305 371 8 2 1 369 1 371 0.0 726
Msa0167110 MtrunA17_Chr1g0189931 63.662 355 128 1 12 366 12 365 8.53e-179 501
Msa0167110 MtrunA17_Chr7g0275011 63.585 357 129 1 12 368 14 369 1.28e-177 498
Msa0167110 MtrunA17_Chr7g0274991 64.110 365 130 1 3 367 4 367 1.18e-173 488
Msa0167110 MtrunA17_Chr1g0189901 61.957 368 137 2 4 369 1 367 6.89e-172 483
Msa0167110 MtrunA17_Chr7g0275001 61.983 363 134 3 6 367 1 360 3.47e-169 476
Msa0167110 MtrunA17_Chr7g0275021 59.714 350 140 1 17 366 19 367 8.54e-168 473
Msa0167110 MtrunA17_Chr6g0457921 60.112 356 140 2 13 367 10 364 1.37e-166 469
Msa0167110 MtrunA17_Chr4g0008851 62.291 358 131 3 12 367 13 368 2.04e-165 467
Msa0167110 MtrunA17_Chr7g0215961 58.197 366 134 3 3 368 9 355 3.02e-160 453
Msa0167110 MtrunA17_Chr1g0189891 57.143 364 146 2 8 369 5 360 2.21e-150 428
Msa0167110 MtrunA17_Chr8g0374101 40.120 334 194 5 32 359 37 370 8.07e-80 249
Msa0167110 MtrunA17_Chr4g0068441 39.577 331 194 5 32 359 35 362 7.66e-78 244
Msa0167110 MtrunA17_Chr3g0131321 36.685 368 216 5 4 359 1 363 1.18e-76 241
Msa0167110 MtrunA17_Chr2g0294301 36.813 364 216 7 3 363 14 366 4.08e-76 239
Msa0167110 MtrunA17_Chr3g0077571 38.177 351 208 6 12 362 13 354 9.79e-76 238
Msa0167110 MtrunA17_Chr5g0438621 37.037 351 211 6 4 347 1 348 5.46e-74 233
Msa0167110 MtrunA17_Chr5g0434621 38.484 343 204 7 8 348 1 338 6.76e-74 233
Msa0167110 MtrunA17_Chr2g0294311 35.135 370 222 7 7 363 7 371 4.28e-73 231
Msa0167110 MtrunA17_Chr8g0380041 37.017 362 221 5 7 365 6 363 1.61e-72 230
Msa0167110 MtrunA17_Chr4g0017431 34.973 366 234 4 1 365 1 363 2.81e-70 224
Msa0167110 MtrunA17_Chr2g0285061 38.416 341 205 4 13 351 13 350 6.58e-70 223
Msa0167110 MtrunA17_Chr3g0086641 37.110 353 213 7 4 352 9 356 7.21e-69 221
Msa0167110 MtrunA17_Chr3g0105401 36.127 346 208 8 4 343 1 339 5.38e-68 218
Msa0167110 MtrunA17_Chr2g0330781 38.978 313 179 6 32 338 31 337 8.17e-68 217
Msa0167110 MtrunA17_Chr5g0444401 37.243 341 199 7 32 364 28 361 1.99e-67 216
Msa0167110 MtrunA17_Chr5g0432101 34.769 325 205 4 24 344 25 346 3.16e-67 216
Msa0167110 MtrunA17_Chr1g0156921 35.674 356 204 7 3 343 7 352 3.75e-67 216
Msa0167110 MtrunA17_Chr1g0156911 35.174 344 219 3 1 343 6 346 5.48e-67 215
Msa0167110 MtrunA17_Chr3g0092131 35.652 345 211 6 4 346 1 336 8.11e-67 215
Msa0167110 MtrunA17_Chr3g0099161 37.391 345 195 10 32 365 92 426 9.88e-67 217
Msa0167110 MtrunA17_Chr1g0156901 37.143 350 210 4 1 346 19 362 1.16e-66 215
Msa0167110 MtrunA17_Chr3g0077581 38.053 339 193 8 33 362 37 367 2.57e-66 214
Msa0167110 MtrunA17_Chr8g0341001 35.143 350 219 6 1 346 1 346 2.83e-66 213
Msa0167110 MtrunA17_Chr4g0060811 37.460 315 192 5 34 346 29 340 2.98e-65 211
Msa0167110 MtrunA17_Chr8g0371491 34.627 335 208 5 9 338 13 341 4.08e-65 211
Msa0167110 MtrunA17_Chr5g0438631 35.629 334 208 5 12 342 9 338 5.16e-65 210
Msa0167110 MtrunA17_Chr2g0320671 35.608 337 209 5 12 346 13 343 2.53e-64 208
Msa0167110 MtrunA17_Chr3g0120861 35.275 309 193 6 32 337 38 342 1.11e-63 207
Msa0167110 MtrunA17_Chr5g0438641 34.347 329 205 6 25 346 25 349 1.39e-63 206
Msa0167110 MtrunA17_Chr3g0099151 35.277 343 206 8 32 365 87 422 1.94e-63 208
Msa0167110 MtrunA17_Chr1g0156891 35.905 337 210 5 21 354 32 365 4.42e-63 206
Msa0167110 MtrunA17_Chr4g0046151 34.174 357 208 9 15 349 15 366 5.05e-63 205
Msa0167110 MtrunA17_Chr1g0156931 34.268 321 200 5 32 348 41 354 8.66e-63 204
Msa0167110 MtrunA17_Chr3g0142941 35.220 318 192 5 32 343 47 356 1.08e-61 202
Msa0167110 MtrunA17_Chr5g0405831 34.985 323 198 6 32 348 43 359 2.04e-61 201
Msa0167110 MtrunA17_Chr8g0371471 32.209 326 210 5 32 352 41 360 2.79e-61 201
Msa0167110 MtrunA17_Chr8g0371481 33.333 327 206 6 32 352 41 361 8.52e-61 199
Msa0167110 MtrunA17_Chr5g0405821 33.714 350 218 8 7 348 17 360 2.57e-60 198
Msa0167110 MtrunA17_Chr5g0396511 34.024 338 217 5 34 368 48 382 1.03e-59 197
Msa0167110 MtrunA17_Chr3g0099231 34.024 338 211 7 32 363 28 359 1.68e-59 197
Msa0167110 MtrunA17_Chr8g0370951 33.978 362 223 8 12 362 9 365 1.95e-59 196
Msa0167110 MtrunA17_Chr3g0085881 36.637 333 194 10 33 363 34 351 4.69e-59 194
Msa0167110 MtrunA17_Chr2g0283191 31.714 350 220 8 20 354 22 367 2.92e-57 191
Msa0167110 MtrunA17_Chr1g0157001 38.123 341 187 8 37 362 41 372 4.44e-57 190
Msa0167110 MtrunA17_Chr4g0027521 34.062 320 203 4 32 346 27 343 8.04e-57 189
Msa0167110 MtrunA17_Chr3g0142921 35.505 307 193 4 32 336 36 339 6.31e-56 187
Msa0167110 MtrunA17_Chr2g0284951 32.787 366 226 9 7 366 5 356 3.15e-55 185
Msa0167110 MtrunA17_Chr1g0189911 53.020 149 69 1 222 369 2 150 8.87e-55 177
Msa0167110 MtrunA17_Chr5g0437421 32.812 320 203 4 32 343 32 347 1.82e-54 183
Msa0167110 MtrunA17_Chr2g0301641 32.277 347 216 8 30 366 41 378 2.24e-54 184
Msa0167110 MtrunA17_Chr8g0380031 32.335 334 211 6 34 365 86 406 9.31e-53 180
Msa0167110 MtrunA17_Chr8g0370981 29.310 406 234 6 6 364 19 418 6.26e-52 178
Msa0167110 MtrunA17_Chr2g0285001 30.997 371 235 9 4 366 5 362 9.45e-51 174
Msa0167110 MtrunA17_Chr2g0284921 34.098 305 189 5 34 336 36 330 3.56e-50 172
Msa0167110 MtrunA17_Chr8g0349341 32.749 342 203 10 32 362 37 362 1.53e-49 170
Msa0167110 MtrunA17_Chr2g0284991 30.473 338 221 7 34 367 35 362 8.40e-49 169
Msa0167110 MtrunA17_Chr8g0344931 28.997 369 238 9 6 365 8 361 1.33e-48 167
Msa0167110 MtrunA17_Chr5g0420811 32.764 351 205 11 8 347 6 336 1.05e-47 165
Msa0167110 MtrunA17_Chr1g0189921 64.655 116 40 1 12 127 11 125 3.38e-46 155
Msa0167110 MtrunA17_Chr2g0284941 31.268 339 194 9 34 366 35 340 3.41e-46 161
Msa0167110 MtrunA17_Chr8g0349321 30.612 343 211 10 32 363 37 363 2.82e-44 156
Msa0167110 MtrunA17_Chr3g0085231 27.945 365 233 9 7 363 6 348 3.94e-44 155
Msa0167110 MtrunA17_Chr8g0344941 27.809 356 229 12 12 352 19 361 5.00e-41 148
Msa0167110 MtrunA17_Chr7g0228261 64.130 92 33 0 276 367 3 94 8.49e-41 139
Msa0167110 MtrunA17_Chr8g0349301 32.986 288 170 8 32 313 37 307 1.18e-38 140
Msa0167110 MtrunA17_Chr8g0370961 32.759 232 144 4 135 362 19 242 8.85e-38 136
Msa0167110 MtrunA17_Chr8g0349331 28.739 341 190 8 32 363 35 331 5.91e-36 133
Msa0167110 MtrunA17_Chr1g0160031 31.398 379 216 14 1 349 4 368 1.89e-34 130
Msa0167110 MtrunA17_Chr6g0459921 30.453 243 162 7 127 365 122 361 4.87e-33 126
Msa0167110 MtrunA17_Chr6g0455661 28.755 233 162 4 135 365 242 472 1.37e-32 127
Msa0167110 MtrunA17_Chr6g0455661 42.063 126 62 4 1 124 3 119 3.00e-19 89.0
Msa0167110 MtrunA17_Chr4g0027571 30.986 213 143 3 136 346 3 213 5.72e-32 120
Msa0167110 MtrunA17_Chr8g0381581 27.733 375 225 12 6 349 15 374 3.02e-31 122
Msa0167110 MtrunA17_Chr7g0229591 32.367 207 135 3 1 207 1 202 2.04e-29 113
Msa0167110 MtrunA17_Chr2g0283481 28.191 376 241 12 7 362 22 388 4.50e-29 116
Msa0167110 MtrunA17_Chr1g0160011 30.952 378 214 14 1 349 10 369 2.29e-28 114
Msa0167110 MtrunA17_Chr1g0159971 27.882 373 219 15 12 349 21 378 2.48e-28 114
Msa0167110 MtrunA17_Chr7g0266061 27.576 330 197 14 32 346 42 344 2.30e-27 110
Msa0167110 MtrunA17_Chr1g0198351 27.195 353 210 14 4 336 8 333 2.56e-27 110
Msa0167110 MtrunA17_Chr7g0275291 28.158 380 221 13 2 350 5 363 2.52e-26 108
Msa0167110 MtrunA17_Chr1g0159991 29.744 390 223 16 1 358 7 377 3.21e-26 108
Msa0167110 MtrunA17_Chr7g0254461 27.561 410 227 19 1 360 1 390 1.54e-25 106
Msa0167110 MtrunA17_Chr2g0283501 27.577 359 226 14 14 349 13 360 4.26e-25 104
Msa0167110 MtrunA17_Chr2g0283511 27.926 376 229 15 1 349 1 361 5.55e-25 104
Msa0167110 MtrunA17_Chr1g0178931 25.373 335 217 11 22 346 27 338 6.04e-25 103
Msa0167110 MtrunA17_Chr1g0160101 27.551 392 236 16 1 360 11 386 1.34e-24 103
Msa0167110 MtrunA17_Chr6g0450701 27.415 383 228 13 1 350 1 366 3.84e-24 102
Msa0167110 MtrunA17_Chr1g0178941 25.223 337 223 10 22 346 30 349 4.32e-24 101
Msa0167110 MtrunA17_Chr6g0450721 27.419 372 223 14 1 350 1 347 5.49e-24 101
Msa0167110 MtrunA17_Chr3g0104821 26.608 342 217 13 31 349 43 373 7.03e-24 101
Msa0167110 MtrunA17_Chr8g0347751 27.273 374 228 14 7 350 11 370 9.52e-24 101
Msa0167110 MtrunA17_Chr6g0450731 26.703 367 234 11 1 350 1 349 9.59e-24 100
Msa0167110 MtrunA17_Chr1g0198381 26.126 333 197 14 32 346 2 303 1.17e-23 99.8
Msa0167110 MtrunA17_Chr1g0191461 28.647 377 220 17 1 346 1 359 4.41e-23 99.0
Msa0167110 MtrunA17_Chr7g0271551 27.219 338 198 15 34 348 38 350 6.72e-23 98.6
Msa0167110 MtrunA17_Chr1g0159981 27.735 393 229 15 4 358 12 387 9.67e-23 98.6
Msa0167110 MtrunA17_Chr8g0370971 42.063 126 68 2 3 124 10 134 1.04e-21 90.9
Msa0167110 MtrunA17_Chr6g0450711 28.490 351 196 14 32 350 122 449 3.14e-21 94.7
Msa0167110 MtrunA17_Chr4g0027561 38.281 128 77 1 1 128 1 126 2.05e-20 86.7
Msa0167110 MtrunA17_Chr5g0440501 24.790 238 169 4 135 363 13 249 6.68e-20 88.2
Msa0167110 MtrunA17_Chr8g0352901 26.542 373 230 13 7 350 3 360 7.22e-20 90.1
Msa0167110 MtrunA17_Chr7g0229581 30.612 147 100 2 210 354 8 154 7.46e-20 85.5
Msa0167110 MtrunA17_Chr2g0301581 27.841 352 181 13 32 349 34 346 1.41e-19 89.0
Msa0167110 MtrunA17_Chr7g0273101 27.042 355 200 13 32 349 29 361 1.43e-19 89.4
Msa0167110 MtrunA17_Chr2g0317271 26.012 346 219 12 21 349 19 344 3.90e-19 87.8
Msa0167110 MtrunA17_Chr7g0226941 27.500 360 209 15 32 357 33 374 9.19e-19 86.7
Msa0167110 MtrunA17_Chr0c01g0489581 25.507 345 222 11 21 349 19 344 1.06e-18 86.3
Msa0167110 MtrunA17_Chr2g0317261 26.519 362 227 14 7 349 3 344 1.24e-18 86.3
Msa0167110 MtrunA17_Chr0c01g0489571 25.507 345 222 11 21 349 19 344 1.90e-18 85.5
Msa0167110 MtrunA17_Chr6g0469511 42.105 114 62 1 32 145 30 139 5.32e-18 79.7
Msa0167110 MtrunA17_Chr2g0283531 28.940 349 197 18 32 349 31 359 5.72e-18 84.3
Msa0167110 MtrunA17_Chr2g0301541 27.273 352 183 13 32 349 34 346 7.44e-18 84.0
Msa0167110 MtrunA17_Chr2g0321991 42.017 119 56 4 8 118 6 119 8.26e-18 79.0
Msa0167110 MtrunA17_Chr3g0093031 26.316 342 215 15 31 349 29 356 3.14e-17 82.0
Msa0167110 MtrunA17_Chr3g0112821 26.409 337 216 15 31 349 29 351 1.11e-16 80.5
Msa0167110 MtrunA17_Chr3g0112691 26.361 349 206 17 31 350 29 355 6.13e-16 78.6
Msa0167110 MtrunA17_Chr8g0339251 26.316 323 206 10 7 317 3 305 2.07e-15 76.3
Msa0167110 MtrunA17_Chr1g0178951 38.235 102 56 4 23 121 8 105 8.07e-14 67.4
Msa0167110 MtrunA17_Chr6g0469521 32.258 124 82 2 207 328 29 152 1.05e-13 68.2
Msa0167110 MtrunA17_Chr4g0018571 35.461 141 87 3 206 343 27 166 1.92e-13 68.2
Msa0167110 MtrunA17_Chr2g0308201 55.556 54 23 1 32 85 35 87 1.91e-11 60.1
Msa0167110 MtrunA17_Chr3g0104831 23.792 269 173 10 104 349 33 292 2.93e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167110 AT5G33370.1 63.760 367 130 2 1 367 1 364 5.35e-178 499
Msa0167110 AT3G04290.1 63.662 355 128 1 14 368 11 364 8.05e-172 483
Msa0167110 AT4G28780.1 63.158 361 126 4 14 369 9 367 1.19e-170 480
Msa0167110 AT5G18430.1 62.824 347 128 1 20 365 16 362 4.05e-163 461
Msa0167110 AT5G33370.2 61.775 293 109 2 1 293 1 290 5.16e-130 376
Msa0167110 AT2G23540.1 38.378 370 210 6 14 365 18 387 1.77e-81 254
Msa0167110 AT3G50400.1 39.943 348 202 6 19 359 21 368 4.36e-79 247
Msa0167110 AT5G37690.1 39.067 343 203 6 7 347 1 339 8.68e-77 241
Msa0167110 AT5G08460.1 38.988 336 198 4 32 362 49 382 9.07e-75 236
Msa0167110 AT5G37690.2 38.484 343 197 7 7 347 1 331 1.56e-72 229
Msa0167110 AT1G29670.1 39.058 361 204 6 12 365 12 363 1.80e-72 230
Msa0167110 AT5G15720.1 37.101 345 206 6 27 365 25 364 6.30e-72 229
Msa0167110 AT1G29670.2 39.058 361 204 6 12 365 80 431 8.74e-72 230
Msa0167110 AT1G71250.1 37.151 358 220 4 7 362 16 370 2.13e-71 228
Msa0167110 AT1G06990.1 34.819 359 209 5 12 348 2 357 3.73e-71 226
Msa0167110 AT2G30220.1 37.261 314 192 4 32 342 33 344 1.65e-70 225
Msa0167110 AT1G71691.2 38.988 336 198 6 32 366 55 384 2.46e-70 225
Msa0167110 AT1G29660.1 37.569 362 211 8 12 365 10 364 6.19e-70 223
Msa0167110 AT1G33811.1 36.885 366 216 7 6 362 8 367 5.57e-69 221
Msa0167110 AT5G03810.1 35.920 348 216 5 4 347 1 345 6.72e-69 221
Msa0167110 AT5G45670.1 37.941 340 203 5 1 338 1 334 4.52e-68 219
Msa0167110 AT2G30310.1 35.987 314 196 4 32 342 34 345 5.56e-68 218
Msa0167110 AT1G75890.2 35.817 349 210 8 7 348 22 363 5.57e-68 218
Msa0167110 AT1G75890.3 35.817 349 210 8 7 348 51 392 8.74e-68 219
Msa0167110 AT1G74460.1 37.771 323 195 6 34 354 25 343 1.13e-67 218
Msa0167110 AT5G03820.1 38.125 320 191 4 32 347 33 349 1.46e-67 217
Msa0167110 AT2G04570.1 34.795 342 216 6 12 350 8 345 1.61e-67 217
Msa0167110 AT5G03820.2 38.245 319 190 4 32 346 61 376 4.59e-67 217
Msa0167110 AT1G75880.1 36.842 323 192 6 32 348 52 368 1.98e-66 215
Msa0167110 AT4G26790.1 35.714 308 193 4 32 337 29 333 2.79e-66 214
Msa0167110 AT4G26790.2 35.714 308 193 4 32 337 29 333 2.79e-66 214
Msa0167110 AT5G42170.1 35.350 314 195 4 36 347 54 361 1.27e-65 213
Msa0167110 AT1G75880.2 36.533 323 192 7 32 348 52 367 1.64e-65 213
Msa0167110 AT2G42990.1 36.765 340 206 8 11 347 8 341 1.79e-65 211
Msa0167110 AT1G75890.1 34.349 361 212 8 7 348 22 376 5.42e-65 211
Msa0167110 AT1G58430.1 34.579 321 205 4 25 342 28 346 1.17e-64 210
Msa0167110 AT3G16370.1 35.806 310 193 5 32 338 30 336 4.80e-64 208
Msa0167110 AT5G41890.1 34.078 358 219 7 16 359 15 369 7.36e-64 208
Msa0167110 AT5G45950.1 35.465 344 213 8 10 352 18 353 1.70e-63 207
Msa0167110 AT2G31540.1 34.111 343 217 5 7 342 6 346 4.12e-63 206
Msa0167110 AT1G20120.1 34.494 316 200 6 32 344 78 389 4.84e-62 204
Msa0167110 AT5G45960.1 33.645 321 202 5 25 338 40 356 6.54e-62 203
Msa0167110 AT2G24560.1 33.438 317 200 5 32 342 34 345 7.68e-62 202
Msa0167110 AT5G22810.1 34.125 337 212 6 17 347 19 351 1.90e-61 201
Msa0167110 AT4G18970.1 37.013 308 189 4 33 338 29 333 6.86e-61 200
Msa0167110 AT4G18970.2 37.013 308 189 4 33 338 29 333 3.23e-60 200
Msa0167110 AT1G75900.1 33.437 323 201 6 32 348 43 357 3.58e-59 196
Msa0167110 AT3G53100.1 35.179 307 194 4 32 336 29 332 9.42e-58 191
Msa0167110 AT2G19060.1 32.857 350 213 10 5 349 4 336 6.70e-57 189
Msa0167110 AT1G73610.1 36.909 317 182 6 32 346 35 335 1.41e-56 188
Msa0167110 AT4G10950.2 33.433 335 217 5 32 363 71 402 1.60e-56 190
Msa0167110 AT1G59406.1 31.322 348 223 6 7 348 5 342 2.23e-56 188
Msa0167110 AT1G59030.1 31.322 348 223 6 7 348 5 342 2.23e-56 188
Msa0167110 AT1G58725.1 31.322 348 223 6 7 348 5 342 2.23e-56 188
Msa0167110 AT1G20130.2 33.437 323 197 6 32 342 184 500 5.75e-56 191
Msa0167110 AT1G20130.1 33.437 323 197 6 32 342 204 520 1.06e-55 191
Msa0167110 AT1G20135.1 33.432 338 200 10 13 343 8 327 3.44e-55 184
Msa0167110 AT4G10950.1 33.134 335 214 5 32 363 71 398 1.25e-54 185
Msa0167110 AT5G63170.1 33.929 336 201 8 6 338 4 321 1.81e-54 182
Msa0167110 AT3G43570.1 30.321 343 204 6 7 348 5 313 2.52e-54 182
Msa0167110 AT2G40250.1 32.622 328 204 6 32 347 36 358 3.92e-54 182
Msa0167110 AT4G30140.1 35.347 331 197 7 33 363 34 347 5.44e-54 182
Msa0167110 AT3G14820.1 30.966 352 219 9 8 346 1 341 1.87e-53 180
Msa0167110 AT5G55050.1 31.176 340 222 7 33 364 40 375 2.28e-53 181
Msa0167110 AT1G58520.3 31.138 334 207 7 21 348 19 335 4.78e-52 176
Msa0167110 AT1G58525.1 31.138 334 207 7 21 348 19 335 4.78e-52 176
Msa0167110 AT2G19010.1 31.897 348 217 8 5 349 4 334 1.90e-51 175
Msa0167110 AT5G15720.3 33.704 270 173 3 95 359 59 327 3.41e-51 174
Msa0167110 AT1G71691.1 35.664 286 178 5 82 366 3 283 3.74e-51 172
Msa0167110 AT2G19010.2 31.897 348 217 8 5 349 34 364 3.88e-51 175
Msa0167110 AT2G19050.1 33.033 333 202 8 33 362 32 346 5.63e-51 174
Msa0167110 AT1G20132.1 30.960 323 210 7 32 348 61 376 1.27e-50 174
Msa0167110 AT5G15720.2 37.545 277 162 6 27 297 25 296 5.34e-50 170
Msa0167110 AT1G71691.3 40.304 263 150 6 32 293 55 311 1.90e-49 169
Msa0167110 AT4G16230.1 41.204 216 123 3 32 245 30 243 1.19e-48 165
Msa0167110 AT2G24560.2 33.582 268 167 5 32 293 34 296 6.74e-48 165
Msa0167110 AT5G40990.1 29.319 382 246 10 1 366 1 374 4.85e-47 164
Msa0167110 AT1G75910.1 33.428 353 208 9 8 349 5 341 7.15e-47 163
Msa0167110 AT1G23500.1 32.486 354 216 7 3 349 2 339 6.93e-46 160
Msa0167110 AT1G71120.1 32.184 348 218 11 18 359 17 352 7.76e-46 160
Msa0167110 AT1G75920.2 31.429 350 215 8 10 349 7 341 1.27e-44 157
Msa0167110 AT3G14225.2 28.493 365 236 10 15 365 20 373 4.65e-44 156
Msa0167110 AT3G14225.1 28.415 366 239 9 15 365 20 377 1.64e-43 155
Msa0167110 AT2G19050.2 35.081 248 152 4 33 280 32 270 4.82e-43 151
Msa0167110 AT1G75920.1 30.411 365 214 9 10 349 2 351 1.42e-41 149
Msa0167110 AT3G43550.1 30.743 296 189 6 4 293 1 286 2.44e-41 147
Msa0167110 AT2G03980.2 33.333 315 191 9 32 338 43 346 3.39e-40 146
Msa0167110 AT2G03980.3 33.333 315 191 9 32 338 43 346 3.39e-40 146
Msa0167110 AT2G03980.1 33.333 315 191 9 32 338 43 346 3.39e-40 146
Msa0167110 AT2G03980.4 33.333 315 191 9 32 338 43 346 3.39e-40 146
Msa0167110 AT1G53990.1 28.346 381 236 11 4 365 2 364 6.59e-40 145
Msa0167110 AT1G53940.2 28.940 349 223 11 32 366 39 376 1.64e-39 144
Msa0167110 AT1G53920.1 31.118 331 201 13 32 349 48 364 1.67e-39 144
Msa0167110 AT1G75930.1 30.814 344 211 10 12 346 9 334 4.01e-38 140
Msa0167110 AT1G75920.3 29.714 350 190 9 10 349 7 310 4.26e-36 134
Msa0167110 AT2G31550.1 32.500 200 132 2 139 336 1 199 1.70e-35 129
Msa0167110 AT1G75920.4 30.233 301 185 8 59 349 28 313 2.19e-33 126
Msa0167110 AT1G54030.1 27.059 340 218 11 30 365 50 363 3.09e-29 117
Msa0167110 AT5G03610.1 28.660 321 192 14 34 340 45 342 5.23e-28 113
Msa0167110 AT2G04020.1 34.632 231 127 8 32 250 43 261 5.47e-28 110
Msa0167110 AT1G56670.1 29.167 360 203 16 9 338 10 347 1.72e-27 112
Msa0167110 AT1G67830.1 27.978 361 213 13 23 351 21 366 8.04e-27 110
Msa0167110 AT2G04020.2 36.364 209 115 7 32 234 43 239 9.95e-27 108
Msa0167110 AT1G54000.1 26.016 369 243 11 3 362 7 354 9.97e-27 110
Msa0167110 AT3G14220.1 26.519 362 234 12 12 364 14 352 1.17e-25 106
Msa0167110 AT1G09390.1 28.689 366 215 14 6 348 12 354 1.75e-25 106
Msa0167110 AT4G01130.1 26.166 386 230 14 3 353 6 371 1.91e-25 106
Msa0167110 AT1G54010.1 25.405 370 246 10 3 363 7 355 2.03e-25 106
Msa0167110 AT3G09930.2 26.994 326 198 12 33 342 40 341 2.67e-24 102
Msa0167110 AT3G09930.1 26.994 326 198 12 33 342 40 341 2.67e-24 102
Msa0167110 AT3G14210.1 27.666 347 211 13 32 363 36 357 3.05e-24 103
Msa0167110 AT3G26430.1 27.042 355 204 11 32 350 31 366 3.20e-24 102
Msa0167110 AT1G54790.3 27.056 377 226 13 6 349 4 364 3.73e-24 102
Msa0167110 AT5G14450.1 26.330 376 226 13 7 349 16 373 5.73e-24 102
Msa0167110 AT1G53940.1 28.519 270 174 10 32 293 39 297 6.43e-24 100
Msa0167110 AT1G28610.2 27.147 361 225 14 14 349 12 359 4.68e-23 99.8
Msa0167110 AT1G54020.2 24.110 365 254 7 7 368 8 352 5.28e-23 99.4
Msa0167110 AT1G28580.1 27.540 374 225 16 7 349 8 366 3.22e-22 97.4
Msa0167110 AT1G28640.1 27.394 376 236 15 5 356 7 369 6.33e-22 96.3
Msa0167110 AT2G27360.1 25.570 395 252 16 1 369 1 379 1.77e-21 95.1
Msa0167110 AT1G28650.1 26.790 377 237 15 1 349 1 366 3.05e-21 94.4
Msa0167110 AT1G28670.1 26.757 370 235 14 5 349 7 365 1.53e-20 92.4
Msa0167110 AT3G62280.1 27.515 338 212 12 36 358 40 359 1.72e-20 92.0
Msa0167110 AT1G28590.1 26.566 399 237 17 4 363 10 391 2.06e-20 92.4
Msa0167110 AT3G05180.1 28.346 381 215 15 16 359 20 379 3.50e-20 91.3
Msa0167110 AT1G28570.1 27.151 372 231 17 4 349 6 363 3.64e-20 91.3
Msa0167110 AT4G16220.1 52.688 93 42 1 32 124 30 120 7.16e-20 88.2
Msa0167110 AT3G27950.1 26.385 379 229 14 1 350 1 358 9.58e-20 90.1
Msa0167110 AT1G54790.1 25.397 378 236 12 1 349 3 363 1.81e-19 89.4
Msa0167110 AT1G56670.2 28.065 310 176 13 9 293 10 297 3.58e-19 87.4
Msa0167110 AT4G16233.1 32.500 120 80 1 241 359 5 124 3.75e-19 83.2
Msa0167110 AT1G31550.1 27.532 385 225 21 12 365 15 376 4.57e-19 88.2
Msa0167110 AT5G03600.2 25.152 330 216 11 33 355 50 355 1.07e-18 86.7
Msa0167110 AT5G03600.1 25.152 330 216 11 33 355 15 320 1.34e-18 85.9
Msa0167110 AT1G54030.2 28.807 243 145 9 30 268 50 268 1.67e-18 85.5
Msa0167110 AT4G01130.2 25.382 327 198 13 13 312 13 320 1.98e-18 85.5
Msa0167110 AT4G01130.3 25.424 295 175 10 94 353 1 285 4.24e-18 84.3
Msa0167110 AT3G48460.1 23.848 369 240 14 7 350 12 364 5.81e-18 84.7
Msa0167110 AT1G28660.2 27.926 376 221 19 5 349 7 363 6.74e-17 81.6
Msa0167110 AT1G54790.2 23.762 404 236 13 1 349 3 389 1.40e-14 75.1
Msa0167110 AT2G36325.1 25.938 320 200 12 34 340 49 344 7.29e-14 72.4
Msa0167110 AT3G14210.2 25.472 212 146 5 160 363 22 229 3.23e-13 69.7
Msa0167110 AT1G54020.1 21.831 284 202 5 87 368 1 266 9.48e-13 68.6
Msa0167110 AT1G54020.5 21.831 284 202 5 87 368 1 266 9.48e-13 68.6
Msa0167110 AT1G54020.3 21.831 284 202 5 87 368 1 266 9.48e-13 68.6
Msa0167110 AT1G28580.2 25.869 259 169 9 109 349 32 285 1.60e-12 68.2
Msa0167110 AT1G54020.4 21.801 211 160 2 160 368 10 217 2.52e-12 66.6
Msa0167110 AT3G62280.2 26.119 268 172 9 36 293 40 291 4.55e-11 63.5

Find 102 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGTTCAAGACATCTTTAA+TGG 0.232528 1_4:-48853007 Msa0167110:CDS
AATCCCTGCTGAAGCAAAAT+TGG 0.252060 1_4:+48854419 None:intergenic
CTTGCTACTAGGAGCATAAA+TGG 0.270220 1_4:-48853581 Msa0167110:CDS
ATTGAATGCCGGTGTCATTA+AGG 0.296620 1_4:+48854391 None:intergenic
GGACTCCAACGTCTAATAAA+AGG 0.304629 1_4:-48852936 Msa0167110:exon
GTCAACCTCCCTGACCTTAT+TGG 0.307047 1_4:-48855338 Msa0167110:intron
ATCGTGATCTCTATGCCTTT+TGG 0.307769 1_4:-48853066 Msa0167110:CDS
GTCAATTGAGGACTCAAATA+TGG 0.330097 1_4:+48854465 None:intergenic
TGACGAGACCTAGCTGAAAA+TGG 0.335216 1_4:+48853954 None:intergenic
CAGTTGGGAGTTGAGGTCTT+TGG 0.346612 1_4:+48853496 None:intergenic
CGTGCCGACTCTCCTCCTTA+TGG 0.353508 1_4:-48855407 Msa0167110:CDS
ATGATGGTGCTGAGGTTCAT+AGG 0.355461 1_4:+48852965 None:intergenic
TAGAATTGTTAATGGAGCTT+TGG 0.366372 1_4:-48854027 Msa0167110:CDS
GAGGCAAATAGAATTGTTAA+TGG 0.381254 1_4:-48854035 Msa0167110:CDS
CAAAGACCTCAACTCCCAAC+TGG 0.388782 1_4:-48853495 Msa0167110:CDS
GCACGTTCAGTTGGATGAAA+AGG 0.389234 1_4:+48853040 None:intergenic
GGTGAAGCTACTTACCAATA+AGG 0.392338 1_4:+48855324 None:intergenic
GAGTGGAGAAGTAGGGGCTG+AGG 0.418109 1_4:-48854057 Msa0167110:CDS
GTGACTGGAGTTGGTCCATT+GGG 0.419810 1_4:-48853620 Msa0167110:CDS
CATTATGACTAACATGAGAT+TGG 0.424433 1_4:-48855570 Msa0167110:exon
AAGGCATAGAGATCACGATT+AGG 0.430298 1_4:+48853070 None:intergenic
ATTGACCGGACAAAGACTAT+TGG 0.431236 1_4:-48854448 Msa0167110:CDS
GCTAGAAGGGTGCTTGTGAC+TGG 0.431825 1_4:-48853635 Msa0167110:CDS
CATGTTCATTTGATAAGCAT+TGG 0.443194 1_4:+48853451 None:intergenic
AGGCATAGAGATCACGATTA+GGG 0.444839 1_4:+48853071 None:intergenic
TCTCACTCTCCCTCTGGTGT+TGG 0.455464 1_4:-48855546 Msa0167110:CDS
GTCACGAAATAAATAATTGA+AGG 0.463058 1_4:+48852913 None:intergenic
TGTTTGACTTGGGAGCTAGA+AGG 0.463691 1_4:-48853649 Msa0167110:CDS
CGGCCGGTGGGACGACGACC+AGG 0.464341 1_4:+48855374 None:intergenic
AGCTACTTACCAATAAGGTC+AGG 0.468494 1_4:+48855329 None:intergenic
ATTGGTTCTCACTCTCCCTC+TGG 0.471530 1_4:-48855552 Msa0167110:CDS
TGTGACTGGAGTTGGTCCAT+TGG 0.477476 1_4:-48853621 Msa0167110:CDS
CAAAGATTGAGTGGAGAAGT+AGG 0.478630 1_4:-48854065 Msa0167110:CDS
TGAATTTACAAATTGAATGC+CGG 0.480031 1_4:+48854380 None:intergenic
GTTTGACTTGGGAGCTAGAA+GGG 0.480764 1_4:-48853648 Msa0167110:CDS
AATGCAGCGGCTGTTTGACT+TGG 0.487451 1_4:-48853660 Msa0167110:intron
AATGTTGTAGGCCAGCATAT+TGG 0.489326 1_4:-48854507 Msa0167110:intron
GTCAGGGAGGTTGACACCAT+TGG 0.491565 1_4:+48855346 None:intergenic
TGTGGTCAAGGACGTTTCAA+TGG 0.492649 1_4:-48853127 Msa0167110:CDS
AGTCTTTGTCCGGTCAATTG+AGG 0.493197 1_4:+48854453 None:intergenic
CACATCCCAGTTGGGAGTTG+AGG 0.499260 1_4:+48853489 None:intergenic
TCCAACCAATAGTCTTTGTC+CGG 0.503373 1_4:+48854443 None:intergenic
AATCTCAAGGCACGTTCAGT+TGG 0.504819 1_4:+48853031 None:intergenic
TGGTCATTTGAAGCAAAAGC+TGG 0.507639 1_4:+48853516 None:intergenic
CCCACCGGCCGCTTCTCCAA+TGG 0.507750 1_4:-48855362 Msa0167110:CDS
CCAGGATAATCGATGCCATA+AGG 0.511209 1_4:+48855392 None:intergenic
CACGTTCAGTTGGATGAAAA+GGG 0.515016 1_4:+48853041 None:intergenic
TGATGGTGCTGAGGTTCATA+GGG 0.520237 1_4:+48852966 None:intergenic
TTCCTGCTCAACTTGCTACT+AGG 0.521510 1_4:-48853592 Msa0167110:CDS
TATCCTGGTCGTCGTCCCAC+CGG 0.523378 1_4:-48855377 Msa0167110:CDS
CTCCTAGTAGCAAGTTGAGC+AGG 0.524518 1_4:+48853590 None:intergenic
CCTTATGGCATCGATTATCC+TGG 0.530477 1_4:-48855392 Msa0167110:CDS
TCGATACTGAGAGACAAGAT+AGG 0.536530 1_4:+48853908 None:intergenic
TGGAGAAGTAGGGGCTGAGG+AGG 0.538793 1_4:-48854054 Msa0167110:CDS
ATCACCAATCCTCAAAACTT+CGG 0.541610 1_4:-48853422 Msa0167110:intron
ACAAGATAGGTGCAGTATTG+TGG 0.542334 1_4:+48853921 None:intergenic
AAAGATTGAGTGGAGAAGTA+GGG 0.542697 1_4:-48854064 Msa0167110:CDS
AGGGTGCTTGTGACTGGAGT+TGG 0.543782 1_4:-48853629 Msa0167110:CDS
TATTTGAGTCCTCAATTGAC+CGG 0.547556 1_4:-48854462 Msa0167110:CDS
GTTGGAGTCCATAGCTATGA+TGG 0.547853 1_4:+48852949 None:intergenic
TTGGTACTTATAACACTTGG+TGG 0.548357 1_4:-48854008 Msa0167110:CDS
AAGGTAGCTTGTTGTGGTCA+AGG 0.548628 1_4:-48853139 Msa0167110:CDS
GTTGGTCACCATCATAAGCT+TGG 0.551961 1_4:-48855528 Msa0167110:CDS
TAAACACATCACATCCCAGT+TGG 0.553329 1_4:+48853480 None:intergenic
TCAAGGACGTTTCAATGGCG+TGG 0.557216 1_4:-48853122 Msa0167110:CDS
AAACACATCACATCCCAGTT+GGG 0.558231 1_4:+48853481 None:intergenic
TGTCACAACCAAGCTTATGA+TGG 0.558351 1_4:+48855520 None:intergenic
CCTCAGCACCATCATAGCTA+TGG 0.565595 1_4:-48852957 Msa0167110:CDS
GCTTTGGTACTTATAACACT+TGG 0.569707 1_4:-48854011 Msa0167110:CDS
GTTCAGATAATCCAATATGC+TGG 0.572094 1_4:+48854496 None:intergenic
AGGAGAGTCGGCACGAGCCG+TGG 0.572338 1_4:+48855415 None:intergenic
ACCATTGGAGAAGCGGCCGG+TGG 0.574228 1_4:+48855361 None:intergenic
TGGATGAAAAGGGTCCCAAA+AGG 0.574768 1_4:+48853051 None:intergenic
GACACCATTGGAGAAGCGGC+CGG 0.577021 1_4:+48855358 None:intergenic
ACCGGACAAAGACTATTGGT+TGG 0.578142 1_4:-48854444 Msa0167110:CDS
GGTTGACACCATTGGAGAAG+CGG 0.578408 1_4:+48855354 None:intergenic
CAAGGACGTTTCAATGGCGT+GGG 0.579559 1_4:-48853121 Msa0167110:CDS
TCAGTATCGAAATATTCTTA+CGG 0.585575 1_4:-48853895 Msa0167110:intron
ACATCAAAGGTAGCTTGTTG+TGG 0.586343 1_4:-48853145 Msa0167110:CDS
ATGCAGCGGCTGTTTGACTT+GGG 0.589618 1_4:-48853659 Msa0167110:intron
TACCAGACAGAAAAGTCGAA+TGG 0.594742 1_4:+48852802 None:intergenic
CAATACAAACAAAGATTGAG+TGG 0.596842 1_4:-48854074 Msa0167110:CDS
AAAGACCTCAACTCCCAACT+GGG 0.615805 1_4:-48853494 Msa0167110:CDS
CATAGGGCTCATAAAATCAG+AGG 0.628535 1_4:+48852982 None:intergenic
GTCTTGAACGATAAATCTCA+AGG 0.633417 1_4:+48853018 None:intergenic
CCATTGGAGAAGCGGCCGGT+GGG 0.633585 1_4:+48855362 None:intergenic
CAATAATCATTTGCTAACCA+CGG 0.634313 1_4:-48855432 Msa0167110:CDS
AAGATTGAGTGGAGAAGTAG+GGG 0.634699 1_4:-48854063 Msa0167110:CDS
GCTACTTACCAATAAGGTCA+GGG 0.640350 1_4:+48855330 None:intergenic
ATTGGAATCCTTAATGACAC+CGG 0.650599 1_4:-48854399 Msa0167110:CDS
ATTAGGGCATATGTTTGACA+AGG 0.652973 1_4:+48853087 None:intergenic
CCATAGCTATGATGGTGCTG+AGG 0.653327 1_4:+48852957 None:intergenic
AGGACTCAAATATGGTAACG+TGG 0.655940 1_4:+48854473 None:intergenic
GGATAATCGATGCCATAAGG+AGG 0.661042 1_4:+48855395 None:intergenic
TGAGCAGGAATACAACCCAA+TGG 0.661729 1_4:+48853605 None:intergenic
ATAGGTGCAGTATTGTGGCA+CGG 0.671408 1_4:+48853926 None:intergenic
GATGCCATAAGGAGGAGAGT+CGG 0.673531 1_4:+48855403 None:intergenic
TGATGGTGACCAACACCAGA+GGG 0.674515 1_4:+48855537 None:intergenic
GGTGACTCACTTGTTGACAG+TGG 0.687156 1_4:-48855458 Msa0167110:CDS
GGACTCAAATATGGTAACGT+GGG 0.688159 1_4:+48854474 None:intergenic
ATGATGGTGACCAACACCAG+AGG 0.696249 1_4:+48855536 None:intergenic
ACTTACCAATAAGGTCAGGG+AGG 0.751522 1_4:+48855333 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATAAATATTAATT+AGG - chr1_4:48854205-48854224 Msa0167110:intron 0.0%
!!! TGTTTACTAAATTTTATTTA+TGG - chr1_4:48853238-48853257 Msa0167110:intron 10.0%
!!! GTTTACTAAATTTTATTTAT+GGG - chr1_4:48853239-48853258 Msa0167110:intron 10.0%
!!! TTTTAATTTTATAAATACCT+TGG - chr1_4:48853412-48853431 Msa0167110:intron 10.0%
!! TTTATTCTTAGAAATAAATT+TGG - chr1_4:48853473-48853492 Msa0167110:CDS 10.0%
!! GATAGTAAATAAATTTATAA+CGG + chr1_4:48854617-48854636 None:intergenic 10.0%
!!! TAAAAATTTTCTCAAAGAAA+AGG - chr1_4:48853283-48853302 Msa0167110:intron 15.0%
!!! AAAAATTTTCTCAAAGAAAA+GGG - chr1_4:48853284-48853303 Msa0167110:intron 15.0%
!! CTAAGAAAACATTAAAAATA+TGG + chr1_4:48853368-48853387 None:intergenic 15.0%
!! ATATATAATGTATAAGAACA+CGG + chr1_4:48853566-48853585 None:intergenic 15.0%
!! AGTAAAAAATCAAATGTATT+TGG + chr1_4:48853661-48853680 None:intergenic 15.0%
!!! AATTTGGTAGTAATATATTA+AGG - chr1_4:48854106-48854125 Msa0167110:CDS 15.0%
!!! CAAAAAAAGTTTTAAAAACA+AGG + chr1_4:48855003-48855022 None:intergenic 15.0%
!!! TTATTTTATTGATGAATGTA+TGG - chr1_4:48855506-48855525 Msa0167110:CDS 15.0%
!!! GTGATTTTGTTAAAATTGAT+TGG - chr1_4:48853140-48853159 Msa0167110:CDS 20.0%
!!! AAAATGTGAATTTTATTCCA+AGG + chr1_4:48853432-48853451 None:intergenic 20.0%
!! ACGTTAATTCTAAACAAATT+TGG - chr1_4:48854090-48854109 Msa0167110:CDS 20.0%
!! TTACAATTTACATACCATTT+AGG + chr1_4:48854683-48854702 None:intergenic 20.0%
!! ATCAACTAATCTTTAATTGT+TGG - chr1_4:48855176-48855195 Msa0167110:intron 20.0%
!!! GTTTTGAATGACAATGATTT+TGG - chr1_4:48853099-48853118 Msa0167110:CDS 25.0%
! AGTTATATTCATAGATTCCT+AGG - chr1_4:48853176-48853195 Msa0167110:intron 25.0%
! GTTTCTATCATTATATTCCT+AGG + chr1_4:48853196-48853215 None:intergenic 25.0%
! TAAATTTATTCTCATCTTCG+TGG + chr1_4:48853324-48853343 None:intergenic 25.0%
! TTCTGACATATGAAACATTA+TGG - chr1_4:48853821-48853840 Msa0167110:intron 25.0%
! TGAATTTACAAATTGAATGC+CGG + chr1_4:48853984-48854003 None:intergenic 25.0%
! TTAGGATTACAATTATATGC+AGG - chr1_4:48854223-48854242 Msa0167110:intron 25.0%
!! TCAGTATCGAAATATTCTTA+CGG - chr1_4:48854466-48854485 Msa0167110:CDS 25.0%
! ATTAATCTTGAGATGAAAGA+AGG + chr1_4:48854510-48854529 None:intergenic 25.0%
! TTCTTTCATCTCAAGATTAA+TGG - chr1_4:48854509-48854528 Msa0167110:intron 25.0%
! AATAGAGAAAGAGTGAAATT+AGG + chr1_4:48854980-48854999 None:intergenic 25.0%
! TTAAATATCATCACATGTGT+CGG + chr1_4:48855103-48855122 None:intergenic 25.0%
! GTCACGAAATAAATAATTGA+AGG + chr1_4:48855451-48855470 None:intergenic 25.0%
CATTATGACTAACATGAGAT+TGG - chr1_4:48852791-48852810 Msa0167110:three_prime_UTR 30.0%
! CAATAATCATTTGCTAACCA+CGG - chr1_4:48852929-48852948 Msa0167110:exon 30.0%
GAACTAACTAAAGATGAAGA+AGG + chr1_4:48853061-48853080 None:intergenic 30.0%
!!! CAATGATTTTGGCTAAAACA+TGG - chr1_4:48853110-48853129 Msa0167110:CDS 30.0%
ACATGATTCTGTCAAATTCA+TGG - chr1_4:48853527-48853546 Msa0167110:CDS 30.0%
!!! TTTTTTGCACAAATTATCCC+TGG - chr1_4:48853689-48853708 Msa0167110:intron 30.0%
GGTTGAATAATGAATGTTGT+AGG - chr1_4:48853842-48853861 Msa0167110:intron 30.0%
GATTACAATTATATGCAGGT+GGG - chr1_4:48854227-48854246 Msa0167110:intron 30.0%
CAATACAAACAAAGATTGAG+TGG - chr1_4:48854287-48854306 Msa0167110:intron 30.0%
GAGGCAAATAGAATTGTTAA+TGG - chr1_4:48854326-48854345 Msa0167110:intron 30.0%
TAGAATTGTTAATGGAGCTT+TGG - chr1_4:48854334-48854353 Msa0167110:intron 30.0%
! CTCTCTTCAGTAAAAAGTAT+CGG + chr1_4:48854660-48854679 None:intergenic 30.0%
GTATGTAAATTGTAATGCAG+CGG - chr1_4:48854688-48854707 Msa0167110:intron 30.0%
CATGTTCATTTGATAAGCAT+TGG + chr1_4:48854913-48854932 None:intergenic 30.0%
TTATTTGTAGCAATGACACT+TGG - chr1_4:48855041-48855060 Msa0167110:intron 30.0%
ATCGTTCAAGACATCTTTAA+TGG - chr1_4:48855354-48855373 Msa0167110:CDS 30.0%
!!! TCTCGTGCTTTCTTTGTTTT+TGG - chr1_4:48852882-48852901 Msa0167110:three_prime_UTR 35.0%
TTTCATAAGTGTAGCTGAGT+TGG + chr1_4:48853721-48853740 None:intergenic 35.0%
GTTCAGATAATCCAATATGC+TGG + chr1_4:48853868-48853887 None:intergenic 35.0%
GTCAATTGAGGACTCAAATA+TGG + chr1_4:48853899-48853918 None:intergenic 35.0%
TATTTGAGTCCTCAATTGAC+CGG - chr1_4:48853899-48853918 Msa0167110:CDS 35.0%
ATTGGAATCCTTAATGACAC+CGG - chr1_4:48853962-48853981 Msa0167110:CDS 35.0%
GGATTACAATTATATGCAGG+TGG - chr1_4:48854226-48854245 Msa0167110:intron 35.0%
AAAGATTGAGTGGAGAAGTA+GGG - chr1_4:48854297-48854316 Msa0167110:intron 35.0%
GCTTTGGTACTTATAACACT+TGG - chr1_4:48854350-48854369 Msa0167110:intron 35.0%
TTGGTACTTATAACACTTGG+TGG - chr1_4:48854353-48854372 Msa0167110:intron 35.0%
TTTACTGAAGAGAGCCTAAA+TGG - chr1_4:48854666-48854685 Msa0167110:intron 35.0%
ATCACCAATCCTCAAAACTT+CGG - chr1_4:48854939-48854958 Msa0167110:intron 35.0%
!! TTGATGATACCGAAGTTTTG+AGG + chr1_4:48854951-48854970 None:intergenic 35.0%
!!! AGCAGGTTTTGTTACATCAA+AGG - chr1_4:48855203-48855222 Msa0167110:intron 35.0%
ATTAGGGCATATGTTTGACA+AGG + chr1_4:48855277-48855296 None:intergenic 35.0%
GTCTTGAACGATAAATCTCA+AGG + chr1_4:48855346-48855365 None:intergenic 35.0%
TGTCACAACCAAGCTTATGA+TGG + chr1_4:48852844-48852863 None:intergenic 40.0%
GCTACTTACCAATAAGGTCA+GGG + chr1_4:48853034-48853053 None:intergenic 40.0%
AGCTACTTACCAATAAGGTC+AGG + chr1_4:48853035-48853054 None:intergenic 40.0%
GGTGAAGCTACTTACCAATA+AGG + chr1_4:48853040-48853059 None:intergenic 40.0%
CTTGAAAACCCTATAGTGTG+TGG - chr1_4:48853500-48853519 Msa0167110:CDS 40.0%
ATGTTGTGCCACACACTATA+GGG + chr1_4:48853511-48853530 None:intergenic 40.0%
AATGTTGTAGGCCAGCATAT+TGG - chr1_4:48853854-48853873 Msa0167110:intron 40.0%
! GGACTCAAATATGGTAACGT+GGG + chr1_4:48853890-48853909 None:intergenic 40.0%
! AGGACTCAAATATGGTAACG+TGG + chr1_4:48853891-48853910 None:intergenic 40.0%
ATTGACCGGACAAAGACTAT+TGG - chr1_4:48853913-48853932 Msa0167110:CDS 40.0%
TCCAACCAATAGTCTTTGTC+CGG + chr1_4:48853921-48853940 None:intergenic 40.0%
AATCCCTGCTGAAGCAAAAT+TGG + chr1_4:48853945-48853964 None:intergenic 40.0%
! AATTTTGCTTCAGCAGGGAT+TGG - chr1_4:48853944-48853963 Msa0167110:CDS 40.0%
!! ATTGAATGCCGGTGTCATTA+AGG + chr1_4:48853973-48853992 None:intergenic 40.0%
! CAGCTACTAGTAGCATTGAA+GGG - chr1_4:48854056-48854075 Msa0167110:CDS 40.0%
CAAAGATTGAGTGGAGAAGT+AGG - chr1_4:48854296-48854315 Msa0167110:intron 40.0%
AAGATTGAGTGGAGAAGTAG+GGG - chr1_4:48854298-48854317 Msa0167110:intron 40.0%
! TTCTCACTCCATTTTCAGCT+AGG - chr1_4:48854399-48854418 Msa0167110:CDS 40.0%
ACAAGATAGGTGCAGTATTG+TGG + chr1_4:48854443-48854462 None:intergenic 40.0%
TCGATACTGAGAGACAAGAT+AGG + chr1_4:48854456-48854475 None:intergenic 40.0%
! CTTGCTACTAGGAGCATAAA+TGG - chr1_4:48854780-48854799 Msa0167110:intron 40.0%
! TGGTCATTTGAAGCAAAAGC+TGG + chr1_4:48854848-48854867 None:intergenic 40.0%
AAACACATCACATCCCAGTT+GGG + chr1_4:48854883-48854902 None:intergenic 40.0%
TAAACACATCACATCCCAGT+TGG + chr1_4:48854884-48854903 None:intergenic 40.0%
!!! GATACCGAAGTTTTGAGGAT+TGG + chr1_4:48854946-48854965 None:intergenic 40.0%
CTTTAATTGTTGGTGTGAGC+AGG - chr1_4:48855186-48855205 Msa0167110:intron 40.0%
!! ACATCAAAGGTAGCTTGTTG+TGG - chr1_4:48855216-48855235 Msa0167110:intron 40.0%
AGGCATAGAGATCACGATTA+GGG + chr1_4:48855293-48855312 None:intergenic 40.0%
AAGGCATAGAGATCACGATT+AGG + chr1_4:48855294-48855313 None:intergenic 40.0%
! ATCGTGATCTCTATGCCTTT+TGG - chr1_4:48855295-48855314 Msa0167110:intron 40.0%
! TCGTGATCTCTATGCCTTTT+GGG - chr1_4:48855296-48855315 Msa0167110:intron 40.0%
CACGTTCAGTTGGATGAAAA+GGG + chr1_4:48855323-48855342 None:intergenic 40.0%
CATAGGGCTCATAAAATCAG+AGG + chr1_4:48855382-48855401 None:intergenic 40.0%
GGACTCCAACGTCTAATAAA+AGG - chr1_4:48855425-48855444 Msa0167110:CDS 40.0%
! GAAGGCCTTTTATTAGACGT+TGG + chr1_4:48855433-48855452 None:intergenic 40.0%
! ATCCATTCGACTTTTCTGTC+TGG - chr1_4:48855557-48855576 Msa0167110:CDS 40.0%
TACCAGACAGAAAAGTCGAA+TGG + chr1_4:48855562-48855581 None:intergenic 40.0%
! TCGACTTTTCTGTCTGGTAA+TGG - chr1_4:48855563-48855582 Msa0167110:CDS 40.0%
GTTGGTCACCATCATAAGCT+TGG - chr1_4:48852833-48852852 Msa0167110:three_prime_UTR 45.0%
GGATAATCGATGCCATAAGG+AGG + chr1_4:48852969-48852988 None:intergenic 45.0%
CCAGGATAATCGATGCCATA+AGG + chr1_4:48852972-48852991 None:intergenic 45.0%
!! CCTTATGGCATCGATTATCC+TGG - chr1_4:48852969-48852988 Msa0167110:CDS 45.0%
ACTTACCAATAAGGTCAGGG+AGG + chr1_4:48853031-48853050 None:intergenic 45.0%
CATGTTGTGCCACACACTAT+AGG + chr1_4:48853512-48853531 None:intergenic 45.0%
AGTCTTTGTCCGGTCAATTG+AGG + chr1_4:48853911-48853930 None:intergenic 45.0%
ACCGGACAAAGACTATTGGT+TGG - chr1_4:48853917-48853936 Msa0167110:CDS 45.0%
! GAGCCAATTTTGCTTCAGCA+GGG - chr1_4:48853939-48853958 Msa0167110:CDS 45.0%
CCTTCAATGCTACTAGTAGC+TGG + chr1_4:48854058-48854077 None:intergenic 45.0%
! CCAGCTACTAGTAGCATTGA+AGG - chr1_4:48854055-48854074 Msa0167110:CDS 45.0%
TGACGAGACCTAGCTGAAAA+TGG + chr1_4:48854410-48854429 None:intergenic 45.0%
ATAGGTGCAGTATTGTGGCA+CGG + chr1_4:48854438-48854457 None:intergenic 45.0%
!! TGTTTGACTTGGGAGCTAGA+AGG - chr1_4:48854712-48854731 Msa0167110:intron 45.0%
!! GTTTGACTTGGGAGCTAGAA+GGG - chr1_4:48854713-48854732 Msa0167110:intron 45.0%
TGAGCAGGAATACAACCCAA+TGG + chr1_4:48854759-48854778 None:intergenic 45.0%
!! TTCCTGCTCAACTTGCTACT+AGG - chr1_4:48854769-48854788 Msa0167110:intron 45.0%
AAAGACCTCAACTCCCAACT+GGG - chr1_4:48854867-48854886 Msa0167110:intron 45.0%
!! GTAGCAATGACACTTGGTGT+CGG - chr1_4:48855047-48855066 Msa0167110:intron 45.0%
!! AAGGTAGCTTGTTGTGGTCA+AGG - chr1_4:48855222-48855241 Msa0167110:intron 45.0%
TGTGGTCAAGGACGTTTCAA+TGG - chr1_4:48855234-48855253 Msa0167110:intron 45.0%
TGGATGAAAAGGGTCCCAAA+AGG + chr1_4:48855313-48855332 None:intergenic 45.0%
GCACGTTCAGTTGGATGAAA+AGG + chr1_4:48855324-48855343 None:intergenic 45.0%
AATCTCAAGGCACGTTCAGT+TGG + chr1_4:48855333-48855352 None:intergenic 45.0%
! TGATGGTGCTGAGGTTCATA+GGG + chr1_4:48855398-48855417 None:intergenic 45.0%
! ATGATGGTGCTGAGGTTCAT+AGG + chr1_4:48855399-48855418 None:intergenic 45.0%
GTTGGAGTCCATAGCTATGA+TGG + chr1_4:48855415-48855434 None:intergenic 45.0%
!! TTTATAAAATTAAAAATGTT+TGG + chr1_4:48853407-48853426 None:intergenic 5.0%
! ATTGGTTCTCACTCTCCCTC+TGG - chr1_4:48852809-48852828 Msa0167110:three_prime_UTR 50.0%
! TGATGGTGACCAACACCAGA+GGG + chr1_4:48852827-48852846 None:intergenic 50.0%
! ATGATGGTGACCAACACCAG+AGG + chr1_4:48852828-48852847 None:intergenic 50.0%
! GGTGACTCACTTGTTGACAG+TGG - chr1_4:48852903-48852922 Msa0167110:three_prime_UTR 50.0%
GATGCCATAAGGAGGAGAGT+CGG + chr1_4:48852961-48852980 None:intergenic 50.0%
GGTTGACACCATTGGAGAAG+CGG + chr1_4:48853010-48853029 None:intergenic 50.0%
GTCAACCTCCCTGACCTTAT+TGG - chr1_4:48853023-48853042 Msa0167110:CDS 50.0%
!! AGCTGAGTTGGTAGCTACCA+GGG + chr1_4:48853709-48853728 None:intergenic 50.0%
!! TAGCTGAGTTGGTAGCTACC+AGG + chr1_4:48853710-48853729 None:intergenic 50.0%
! GGAGCCAATTTTGCTTCAGC+AGG - chr1_4:48853938-48853957 Msa0167110:CDS 50.0%
AATGCAGCGGCTGTTTGACT+TGG - chr1_4:48854701-48854720 Msa0167110:intron 50.0%
! ATGCAGCGGCTGTTTGACTT+GGG - chr1_4:48854702-48854721 Msa0167110:intron 50.0%
! TGTGACTGGAGTTGGTCCAT+TGG - chr1_4:48854740-48854759 Msa0167110:intron 50.0%
! GTGACTGGAGTTGGTCCATT+GGG - chr1_4:48854741-48854760 Msa0167110:intron 50.0%
! CTCCTAGTAGCAAGTTGAGC+AGG + chr1_4:48854774-48854793 None:intergenic 50.0%
CAGTTGGGAGTTGAGGTCTT+TGG + chr1_4:48854868-48854887 None:intergenic 50.0%
CAAAGACCTCAACTCCCAAC+TGG - chr1_4:48854866-48854885 Msa0167110:intron 50.0%
TCAAGGACGTTTCAATGGCG+TGG - chr1_4:48855239-48855258 Msa0167110:intron 50.0%
CAAGGACGTTTCAATGGCGT+GGG - chr1_4:48855240-48855259 Msa0167110:intron 50.0%
! CCATAGCTATGATGGTGCTG+AGG + chr1_4:48855407-48855426 None:intergenic 50.0%
CCTCAGCACCATCATAGCTA+TGG - chr1_4:48855404-48855423 Msa0167110:CDS 50.0%
TCTCACTCTCCCTCTGGTGT+TGG - chr1_4:48852815-48852834 Msa0167110:three_prime_UTR 55.0%
GTCAGGGAGGTTGACACCAT+TGG + chr1_4:48853018-48853037 None:intergenic 55.0%
!! GCTAGAAGGGTGCTTGTGAC+TGG - chr1_4:48854726-48854745 Msa0167110:intron 55.0%
! AGGGTGCTTGTGACTGGAGT+TGG - chr1_4:48854732-48854751 Msa0167110:intron 55.0%
CACATCCCAGTTGGGAGTTG+AGG + chr1_4:48854875-48854894 None:intergenic 55.0%
! CACATGTGTCGGCATCGTCA+AGG + chr1_4:48855092-48855111 None:intergenic 55.0%
!! CGTGCCGACTCTCCTCCTTA+TGG - chr1_4:48852954-48852973 Msa0167110:CDS 60.0%
TATCCTGGTCGTCGTCCCAC+CGG - chr1_4:48852984-48853003 Msa0167110:CDS 60.0%
GACACCATTGGAGAAGCGGC+CGG + chr1_4:48853006-48853025 None:intergenic 60.0%
GAGTGGAGAAGTAGGGGCTG+AGG - chr1_4:48854304-48854323 Msa0167110:intron 60.0%
TGGAGAAGTAGGGGCTGAGG+AGG - chr1_4:48854307-48854326 Msa0167110:intron 60.0%
CCATTGGAGAAGCGGCCGGT+GGG + chr1_4:48853002-48853021 None:intergenic 65.0%
ACCATTGGAGAAGCGGCCGG+TGG + chr1_4:48853003-48853022 None:intergenic 65.0%
AGGAGAGTCGGCACGAGCCG+TGG + chr1_4:48852949-48852968 None:intergenic 70.0%
CCCACCGGCCGCTTCTCCAA+TGG - chr1_4:48852999-48853018 Msa0167110:CDS 70.0%
! CGGCCGGTGGGACGACGACC+AGG + chr1_4:48852990-48853009 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 48852753 48855630 48852753 ID=Msa0167110;Name=Msa0167110
chr1_4 mRNA 48852753 48855630 48852753 ID=Msa0167110-mRNA-1;Parent=Msa0167110;Name=Msa0167110-mRNA-1;_AED=0.13;_eAED=0.13;_QI=42|1|1|1|1|1|5|190|369
chr1_4 exon 48852753 48853175 48852753 ID=Msa0167110-mRNA-1:exon:14279;Parent=Msa0167110-mRNA-1
chr1_4 exon 48853423 48853675 48853423 ID=Msa0167110-mRNA-1:exon:14278;Parent=Msa0167110-mRNA-1
chr1_4 exon 48853896 48854138 48853896 ID=Msa0167110-mRNA-1:exon:14277;Parent=Msa0167110-mRNA-1
chr1_4 exon 48854389 48854519 48854389 ID=Msa0167110-mRNA-1:exon:14276;Parent=Msa0167110-mRNA-1
chr1_4 exon 48855339 48855630 48855339 ID=Msa0167110-mRNA-1:exon:14275;Parent=Msa0167110-mRNA-1
chr1_4 five_prime_UTR 48855589 48855630 48855589 ID=Msa0167110-mRNA-1:five_prime_utr;Parent=Msa0167110-mRNA-1
chr1_4 CDS 48855339 48855588 48855339 ID=Msa0167110-mRNA-1:cds;Parent=Msa0167110-mRNA-1
chr1_4 CDS 48854389 48854519 48854389 ID=Msa0167110-mRNA-1:cds;Parent=Msa0167110-mRNA-1
chr1_4 CDS 48853896 48854138 48853896 ID=Msa0167110-mRNA-1:cds;Parent=Msa0167110-mRNA-1
chr1_4 CDS 48853423 48853675 48853423 ID=Msa0167110-mRNA-1:cds;Parent=Msa0167110-mRNA-1
chr1_4 CDS 48852943 48853175 48852943 ID=Msa0167110-mRNA-1:cds;Parent=Msa0167110-mRNA-1
chr1_4 three_prime_UTR 48852753 48852942 48852753 ID=Msa0167110-mRNA-1:three_prime_utr;Parent=Msa0167110-mRNA-1
Gene Sequence

>Msa0167110

ATGACTAACATGAGATTGGTTCTCACTCTCCCTCTGGTGTTGGTCACCATCATAAGCTTGGTTGTGACAATGAGAGTTCAAGCTGCATCTCGTGCTTTCTTTGTTTTTGGTGACTCACTTGTTGACAGTGGCAACAATAATCATTTGCTAACCACGGCTCGTGCCGACTCTCCTCCTTATGGCATCGATTATCCTGGTCGTCGTCCCACCGGCCGCTTCTCCAATGGTGTCAACCTCCCTGACCTTATTGGCCAGCATATTGGATTATCTGAACCCACGTTACCATATTTGAGTCCTCAATTGACCGGACAAAGACTATTGGTTGGAGCCAATTTTGCTTCAGCAGGGATTGGAATCCTTAATGACACCGGCATTCAATTTGTGGGAATATTAAGAATGTTTCAACAGTTTTCGTTGTTTGAGCAATACAAACAAAGATTGAGTGGAGAAGTAGGGGCTGAGGAGGCAAATAGAATTGTTAATGGAGCTTTGGTACTTATAACACTTGGTGGTAATGATTTTGTCAACAACTATTTTCTCACTCCATTTTCAGCTAGGTCTCGTCAATTCACCGTGCCACAATACTGCACCTATCTTGTCTCTCAGTATCGAAATATTCTTACGCGGCTGTTTGACTTGGGAGCTAGAAGGGTGCTTGTGACTGGAGTTGGTCCATTGGGTTGTATTCCTGCTCAACTTGCTACTAGGAGCATAAATGGAGAGTGTGTAAATGAGATACAACAAGCTGCTCAATTTTTCAACCAGCTTTTGCTTCAAATGACCAAAGACCTCAACTCCCAACTGGGATGTGATGTGTTTATTGTTGCCAATGCTTATCAAATGAACATGAATTTAATCACCAATCCTCAAAACTTCGGTTTTGTTACATCAAAGGTAGCTTGTTGTGGTCAAGGACGTTTCAATGGCGTGGGACTATGCACTGCCTTGTCAAACATATGCCCTAATCGTGATCTCTATGCCTTTTGGGACCCTTTTCATCCAACTGAACGTGCCTTGAGATTTATCGTTCAAGACATCTTTAATGGAACCTCTGATTTTATGAGCCCTATGAACCTCAGCACCATCATAGCTATGGACTCCAACGTCTAA
Protein sequence

>Msa0167110

MTNMRLVLTLPLVLVTIISLVVTMRVQAASRAFFVFGDSLVDSGNNNHLLTTARADSPPYGIDYPGRRPTGRFSNGVNLPDLIGQHIGLSEPTLPYLSPQLTGQRLLVGANFASAGIGILNDTGIQFVGILRMFQQFSLFEQYKQRLSGEVGAEEANRIVNGALVLITLGGNDFVNNYFLTPFSARSRQFTVPQYCTYLVSQYRNILTRLFDLGARRVLVTGVGPLGCIPAQLATRSINGECVNEIQQAAQFFNQLLLQMTKDLNSQLGCDVFIVANAYQMNMNLITNPQNFGFVTSKVACCGQGRFNGVGLCTALSNICPNRDLYAFWDPFHPTERALRFIVQDIFNGTSDFMSPMNLSTIIAMDSNV*