AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1145410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1145410 MtrunA17_Chr1g0182811 97.305 371 8 2 1 369 1 371 0.0 724
Msa1145410 MtrunA17_Chr1g0189931 63.662 355 128 1 12 366 12 365 5.75e-179 501
Msa1145410 MtrunA17_Chr7g0275011 63.866 357 128 1 12 368 14 369 7.19e-178 498
Msa1145410 MtrunA17_Chr7g0274991 64.110 365 130 1 3 367 4 367 1.17e-173 488
Msa1145410 MtrunA17_Chr1g0189901 61.685 368 138 2 4 369 1 367 8.48e-172 483
Msa1145410 MtrunA17_Chr7g0275001 61.708 363 135 3 6 367 1 360 2.13e-168 474
Msa1145410 MtrunA17_Chr7g0275021 59.714 350 140 1 17 366 19 367 2.26e-167 472
Msa1145410 MtrunA17_Chr6g0457921 60.112 356 140 2 13 367 10 364 2.62e-166 469
Msa1145410 MtrunA17_Chr4g0008851 62.011 358 132 3 12 367 13 368 2.16e-165 467
Msa1145410 MtrunA17_Chr7g0215961 58.470 366 133 3 3 368 9 355 1.93e-160 454
Msa1145410 MtrunA17_Chr1g0189891 56.868 364 147 2 8 369 5 360 5.08e-150 427
Msa1145410 MtrunA17_Chr8g0374101 40.120 334 194 5 32 359 37 370 2.02e-79 248
Msa1145410 MtrunA17_Chr4g0068441 39.577 331 194 5 32 359 35 362 4.19e-78 244
Msa1145410 MtrunA17_Chr3g0131321 36.957 368 215 5 4 359 1 363 3.99e-77 242
Msa1145410 MtrunA17_Chr2g0294301 37.088 364 215 7 3 363 14 366 3.95e-76 239
Msa1145410 MtrunA17_Chr3g0077571 38.177 351 208 6 12 362 13 354 5.60e-75 236
Msa1145410 MtrunA17_Chr5g0434621 38.192 343 205 7 8 348 1 338 1.52e-73 232
Msa1145410 MtrunA17_Chr5g0438621 37.685 337 204 5 4 337 1 334 4.00e-73 231
Msa1145410 MtrunA17_Chr2g0294311 35.405 370 221 7 7 363 7 371 5.72e-73 231
Msa1145410 MtrunA17_Chr8g0380041 36.740 362 222 5 7 365 6 363 2.22e-71 227
Msa1145410 MtrunA17_Chr4g0017431 34.973 366 234 4 1 365 1 363 5.14e-71 226
Msa1145410 MtrunA17_Chr5g0432101 35.385 325 203 4 24 344 25 346 1.59e-68 219
Msa1145410 MtrunA17_Chr2g0285061 38.123 341 206 4 13 351 13 350 2.13e-68 219
Msa1145410 MtrunA17_Chr3g0092131 36.232 345 209 6 4 346 1 336 2.80e-68 219
Msa1145410 MtrunA17_Chr3g0099161 38.150 346 191 11 32 365 92 426 3.69e-68 220
Msa1145410 MtrunA17_Chr1g0156921 35.674 356 204 7 3 343 7 352 1.08e-67 217
Msa1145410 MtrunA17_Chr5g0444401 37.427 342 197 8 32 364 28 361 1.10e-67 217
Msa1145410 MtrunA17_Chr3g0086641 36.827 353 214 7 4 352 9 356 1.42e-67 217
Msa1145410 MtrunA17_Chr3g0105401 35.838 346 209 8 4 343 1 339 1.77e-67 216
Msa1145410 MtrunA17_Chr2g0330781 38.978 313 179 6 32 338 31 337 2.01e-67 216
Msa1145410 MtrunA17_Chr1g0156911 35.174 344 219 3 1 343 6 346 4.03e-66 213
Msa1145410 MtrunA17_Chr8g0371491 34.925 335 207 5 9 338 13 341 5.15e-66 213
Msa1145410 MtrunA17_Chr1g0156901 37.143 350 210 4 1 346 19 362 5.29e-66 213
Msa1145410 MtrunA17_Chr8g0341001 35.143 350 219 6 1 346 1 346 8.46e-66 212
Msa1145410 MtrunA17_Chr4g0060811 37.460 315 192 5 34 346 29 340 4.77e-65 211
Msa1145410 MtrunA17_Chr3g0077581 37.427 342 197 8 33 365 37 370 1.80e-64 209
Msa1145410 MtrunA17_Chr4g0046151 34.626 361 201 9 15 349 15 366 2.70e-64 209
Msa1145410 MtrunA17_Chr5g0438631 35.329 334 209 5 12 342 9 338 4.12e-64 207
Msa1145410 MtrunA17_Chr3g0099151 35.735 347 199 10 32 365 87 422 2.94e-63 207
Msa1145410 MtrunA17_Chr2g0320671 36.278 317 197 4 32 346 30 343 3.24e-63 205
Msa1145410 MtrunA17_Chr5g0438641 34.043 329 206 6 25 346 25 349 3.44e-63 205
Msa1145410 MtrunA17_Chr3g0120861 34.951 309 194 6 32 337 38 342 4.28e-63 205
Msa1145410 MtrunA17_Chr1g0156931 34.268 321 200 5 32 348 41 354 1.16e-62 204
Msa1145410 MtrunA17_Chr1g0156891 35.905 337 210 5 21 354 32 365 1.34e-62 204
Msa1145410 MtrunA17_Chr5g0405831 35.294 323 197 6 32 348 43 359 2.21e-62 204
Msa1145410 MtrunA17_Chr8g0371471 32.515 326 209 5 32 352 41 360 3.37e-62 203
Msa1145410 MtrunA17_Chr8g0371481 33.639 327 205 6 32 352 41 361 1.18e-61 202
Msa1145410 MtrunA17_Chr5g0405821 34.000 350 217 8 7 348 17 360 1.94e-61 201
Msa1145410 MtrunA17_Chr3g0099231 35.380 342 201 10 32 363 28 359 3.26e-61 201
Msa1145410 MtrunA17_Chr3g0142941 34.906 318 193 5 32 343 47 356 7.22e-61 200
Msa1145410 MtrunA17_Chr3g0085881 36.937 333 193 10 33 363 34 351 5.67e-60 197
Msa1145410 MtrunA17_Chr8g0370951 33.607 366 219 8 12 362 9 365 7.79e-60 197
Msa1145410 MtrunA17_Chr5g0396511 34.024 338 217 5 34 368 48 382 9.81e-60 197
Msa1145410 MtrunA17_Chr1g0157001 38.348 339 189 7 37 362 41 372 5.52e-58 192
Msa1145410 MtrunA17_Chr2g0283191 31.714 350 220 8 20 354 22 367 4.24e-57 190
Msa1145410 MtrunA17_Chr4g0027521 34.268 321 201 5 32 346 27 343 6.16e-57 189
Msa1145410 MtrunA17_Chr2g0301641 32.853 347 214 8 30 366 41 378 6.17e-56 188
Msa1145410 MtrunA17_Chr3g0142921 35.505 307 193 4 32 336 36 339 1.17e-55 186
Msa1145410 MtrunA17_Chr2g0284951 32.787 366 226 9 7 366 5 356 8.71e-55 184
Msa1145410 MtrunA17_Chr1g0189911 53.020 149 69 1 222 369 2 150 1.10e-54 177
Msa1145410 MtrunA17_Chr5g0437421 32.500 320 204 4 32 343 32 347 8.30e-54 181
Msa1145410 MtrunA17_Chr8g0370981 29.657 408 230 7 6 364 19 418 6.66e-52 178
Msa1145410 MtrunA17_Chr8g0380031 31.845 336 214 6 32 365 84 406 1.86e-51 176
Msa1145410 MtrunA17_Chr2g0284921 34.202 307 190 5 32 336 34 330 9.21e-51 173
Msa1145410 MtrunA17_Chr2g0285001 30.997 371 235 9 4 366 5 362 6.87e-50 171
Msa1145410 MtrunA17_Chr8g0344931 29.268 369 237 9 6 365 8 361 3.49e-49 169
Msa1145410 MtrunA17_Chr8g0349341 32.749 342 203 10 32 362 37 362 4.09e-49 169
Msa1145410 MtrunA17_Chr5g0420811 32.764 351 205 11 8 347 6 336 7.92e-48 165
Msa1145410 MtrunA17_Chr2g0284991 30.473 338 221 7 34 367 35 362 8.15e-48 166
Msa1145410 MtrunA17_Chr1g0189921 64.655 116 40 1 12 127 11 125 2.00e-46 155
Msa1145410 MtrunA17_Chr2g0284941 31.268 339 194 9 34 366 35 340 1.44e-45 159
Msa1145410 MtrunA17_Chr3g0085231 27.945 365 233 9 7 363 6 348 4.16e-44 155
Msa1145410 MtrunA17_Chr8g0349321 30.702 342 210 10 32 362 37 362 1.00e-43 155
Msa1145410 MtrunA17_Chr8g0344941 28.090 356 228 12 12 352 19 361 2.68e-41 149
Msa1145410 MtrunA17_Chr7g0228261 63.043 92 34 0 276 367 3 94 3.89e-40 137
Msa1145410 MtrunA17_Chr8g0349301 32.639 288 171 8 32 313 37 307 4.49e-38 139
Msa1145410 MtrunA17_Chr8g0370961 32.328 232 145 4 135 362 19 242 7.48e-38 136
Msa1145410 MtrunA17_Chr8g0349331 29.032 341 189 8 32 363 35 331 1.51e-35 132
Msa1145410 MtrunA17_Chr1g0160031 30.871 379 218 14 1 349 4 368 3.45e-33 127
Msa1145410 MtrunA17_Chr6g0459921 30.041 243 163 7 127 365 122 361 2.09e-32 124
Msa1145410 MtrunA17_Chr6g0455661 28.326 233 163 4 135 365 242 472 3.49e-32 125
Msa1145410 MtrunA17_Chr6g0455661 42.063 126 62 4 1 124 3 119 1.12e-19 90.1
Msa1145410 MtrunA17_Chr8g0381581 27.926 376 223 13 6 349 15 374 3.20e-31 122
Msa1145410 MtrunA17_Chr4g0027571 30.516 213 144 3 136 346 3 213 3.95e-31 118
Msa1145410 MtrunA17_Chr2g0283481 28.457 376 240 12 7 362 22 388 3.95e-30 119
Msa1145410 MtrunA17_Chr7g0229591 31.884 207 136 3 1 207 1 202 2.70e-28 110
Msa1145410 MtrunA17_Chr7g0266061 27.744 328 191 14 32 342 42 340 5.71e-28 112
Msa1145410 MtrunA17_Chr1g0159971 27.882 373 219 15 12 349 21 378 6.63e-28 113
Msa1145410 MtrunA17_Chr1g0160011 30.688 378 215 14 1 349 10 369 7.14e-28 112
Msa1145410 MtrunA17_Chr1g0198351 27.195 353 210 14 4 336 8 333 1.36e-27 111
Msa1145410 MtrunA17_Chr2g0283501 27.577 359 226 14 14 349 13 360 1.40e-26 108
Msa1145410 MtrunA17_Chr7g0275291 28.158 380 221 13 2 350 5 363 7.18e-26 107
Msa1145410 MtrunA17_Chr1g0178931 25.373 335 217 11 22 346 27 338 7.41e-26 106
Msa1145410 MtrunA17_Chr2g0283511 28.150 373 232 15 1 349 1 361 1.66e-25 106
Msa1145410 MtrunA17_Chr1g0159991 29.487 390 224 16 1 358 7 377 1.69e-25 106
Msa1145410 MtrunA17_Chr7g0254461 27.494 411 226 19 1 360 1 390 3.28e-25 105
Msa1145410 MtrunA17_Chr1g0160101 27.551 392 236 16 1 360 11 386 7.90e-25 104
Msa1145410 MtrunA17_Chr1g0178941 25.223 337 223 10 22 346 30 349 8.40e-25 103
Msa1145410 MtrunA17_Chr6g0450731 26.703 367 234 11 1 350 1 349 3.12e-24 102
Msa1145410 MtrunA17_Chr6g0450701 27.415 383 228 13 1 350 1 366 7.78e-24 101
Msa1145410 MtrunA17_Chr8g0347751 27.273 374 228 14 7 350 11 370 7.98e-24 101
Msa1145410 MtrunA17_Chr3g0104821 26.531 343 216 13 31 349 43 373 9.06e-24 101
Msa1145410 MtrunA17_Chr6g0450721 27.419 372 223 14 1 350 1 347 9.91e-24 100
Msa1145410 MtrunA17_Chr1g0198381 26.126 333 197 14 32 346 2 303 1.00e-23 100
Msa1145410 MtrunA17_Chr7g0271551 27.515 338 197 15 34 348 38 350 1.79e-23 100
Msa1145410 MtrunA17_Chr1g0191461 28.647 377 220 17 1 346 1 359 1.01e-22 98.2
Msa1145410 MtrunA17_Chr1g0159981 27.481 393 230 15 4 358 12 387 3.74e-22 96.7
Msa1145410 MtrunA17_Chr8g0370971 42.063 126 68 2 3 124 10 134 5.67e-22 91.7
Msa1145410 MtrunA17_Chr6g0450711 28.490 351 196 14 32 350 122 449 3.20e-21 94.7
Msa1145410 MtrunA17_Chr8g0352901 26.542 373 230 13 7 350 3 360 6.32e-20 90.1
Msa1145410 MtrunA17_Chr4g0027561 38.281 128 77 1 1 128 1 126 6.97e-20 85.1
Msa1145410 MtrunA17_Chr7g0229581 30.612 147 100 2 210 354 8 154 9.98e-20 85.1
Msa1145410 MtrunA17_Chr5g0440501 24.481 241 166 5 135 363 13 249 1.00e-19 87.4
Msa1145410 MtrunA17_Chr7g0273101 27.042 355 200 13 32 349 29 361 6.01e-19 87.4
Msa1145410 MtrunA17_Chr2g0301581 27.586 348 187 12 32 349 34 346 6.16e-19 87.0
Msa1145410 MtrunA17_Chr2g0283531 28.940 349 197 18 32 349 31 359 1.00e-18 86.7
Msa1145410 MtrunA17_Chr2g0321991 42.857 119 55 4 8 118 6 119 2.11e-18 80.5
Msa1145410 MtrunA17_Chr2g0317271 26.377 345 219 12 21 349 19 344 2.27e-18 85.5
Msa1145410 MtrunA17_Chr0c01g0489581 25.507 345 222 11 21 349 19 344 2.48e-18 85.5
Msa1145410 MtrunA17_Chr0c01g0489571 25.507 345 222 11 21 349 19 344 4.30e-18 84.7
Msa1145410 MtrunA17_Chr2g0317261 26.316 361 229 13 7 349 3 344 6.34e-18 84.0
Msa1145410 MtrunA17_Chr6g0469511 42.105 114 62 1 32 145 30 139 1.85e-17 78.6
Msa1145410 MtrunA17_Chr2g0301541 27.011 348 189 12 32 349 34 346 3.81e-17 82.0
Msa1145410 MtrunA17_Chr3g0112691 25.797 345 213 15 31 350 29 355 3.74e-16 79.0
Msa1145410 MtrunA17_Chr8g0339251 26.316 323 206 10 7 317 3 305 2.48e-15 76.3
Msa1145410 MtrunA17_Chr1g0178951 38.235 102 56 4 23 121 8 105 1.71e-13 66.2
Msa1145410 MtrunA17_Chr6g0469521 32.231 121 80 2 210 328 32 152 2.09e-13 67.4
Msa1145410 MtrunA17_Chr4g0018571 35.461 141 87 3 206 343 27 166 3.03e-13 67.4
Msa1145410 MtrunA17_Chr3g0104831 24.627 268 172 11 104 349 33 292 5.13e-11 63.2
Msa1145410 MtrunA17_Chr2g0308201 55.556 54 23 1 32 85 35 87 7.16e-11 58.5
Msa1145410 MtrunA17_Chr4g0018561 57.778 45 19 0 32 76 30 74 7.57e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1145410 AT5G33370.1 64.033 367 129 2 1 367 1 364 1.01e-178 501
Msa1145410 AT3G04290.1 63.944 355 127 1 14 368 11 364 4.04e-172 484
Msa1145410 AT4G28780.1 62.881 361 127 4 14 369 9 367 1.85e-169 477
Msa1145410 AT5G18430.1 62.536 347 129 1 20 365 16 362 5.26e-163 461
Msa1145410 AT5G33370.2 61.775 293 109 2 1 293 1 290 5.45e-130 376
Msa1145410 AT2G23540.1 38.378 370 210 6 14 365 18 387 2.50e-81 253
Msa1145410 AT3G50400.1 40.230 348 201 6 19 359 21 368 1.47e-79 249
Msa1145410 AT5G37690.1 38.484 343 205 6 7 347 1 339 1.03e-75 238
Msa1145410 AT5G08460.1 38.393 336 200 4 32 362 49 382 1.93e-74 236
Msa1145410 AT5G15720.1 37.681 345 204 6 27 365 25 364 3.06e-72 229
Msa1145410 AT1G71250.1 37.151 358 220 4 7 362 16 370 4.48e-72 229
Msa1145410 AT1G06990.1 34.819 359 209 5 12 348 2 357 1.37e-71 228
Msa1145410 AT5G37690.2 37.901 343 199 7 7 347 1 331 2.70e-71 226
Msa1145410 AT1G29670.1 38.781 361 205 6 12 365 12 363 3.45e-71 227
Msa1145410 AT1G29670.2 38.781 361 205 6 12 365 80 431 2.46e-70 226
Msa1145410 AT2G30220.1 37.224 317 188 5 32 342 33 344 2.83e-70 224
Msa1145410 AT1G71691.2 38.988 336 198 6 32 366 55 384 8.45e-70 224
Msa1145410 AT1G74460.1 38.390 323 193 6 34 354 25 343 2.12e-68 219
Msa1145410 AT1G29660.1 37.293 362 212 8 12 365 10 364 2.28e-68 219
Msa1145410 AT1G33811.1 36.585 369 219 7 6 365 8 370 2.58e-68 219
Msa1145410 AT1G75890.2 35.817 349 210 8 7 348 22 363 3.63e-68 219
Msa1145410 AT1G75890.3 35.817 349 210 8 7 348 51 392 6.41e-68 219
Msa1145410 AT2G04570.1 35.088 342 215 6 12 350 8 345 8.95e-68 218
Msa1145410 AT5G45670.1 37.941 340 203 5 1 338 1 334 2.71e-67 217
Msa1145410 AT5G03810.1 35.345 348 218 5 4 347 1 345 5.31e-67 216
Msa1145410 AT2G30310.1 34.615 338 204 6 17 342 13 345 7.07e-67 215
Msa1145410 AT5G03820.1 37.812 320 192 4 32 347 33 349 3.41e-66 214
Msa1145410 AT5G03820.2 37.931 319 191 4 32 346 61 376 7.57e-66 214
Msa1145410 AT2G42990.1 36.765 340 206 8 11 347 8 341 1.45e-65 212
Msa1145410 AT1G75880.1 36.533 323 193 6 32 348 52 368 2.61e-65 212
Msa1145410 AT5G42170.1 35.016 317 198 4 33 347 51 361 5.06e-65 211
Msa1145410 AT1G75890.1 34.349 361 212 8 7 348 22 376 5.13e-65 211
Msa1145410 AT1G58430.1 34.891 321 204 4 25 342 28 346 9.73e-65 210
Msa1145410 AT4G26790.1 35.390 308 194 4 32 337 29 333 1.99e-64 209
Msa1145410 AT4G26790.2 35.390 308 194 4 32 337 29 333 1.99e-64 209
Msa1145410 AT1G75880.2 36.223 323 193 7 32 348 52 367 2.23e-64 209
Msa1145410 AT5G41890.1 34.722 360 214 8 16 359 15 369 2.61e-64 209
Msa1145410 AT3G16370.1 35.806 310 193 5 32 338 30 336 7.77e-64 207
Msa1145410 AT1G20120.1 35.127 316 198 6 32 344 78 389 7.98e-64 209
Msa1145410 AT2G31540.1 34.393 346 212 6 7 342 6 346 1.41e-63 207
Msa1145410 AT5G45950.1 34.884 344 215 8 10 352 18 353 8.30e-63 205
Msa1145410 AT2G24560.1 33.438 317 200 5 32 342 34 345 1.62e-61 202
Msa1145410 AT5G45960.1 33.645 321 202 5 25 338 40 356 1.69e-61 202
Msa1145410 AT5G22810.1 34.125 337 212 6 17 347 19 351 6.65e-61 200
Msa1145410 AT4G18970.1 37.013 308 189 4 33 338 29 333 5.27e-60 197
Msa1145410 AT4G18970.2 37.013 308 189 4 33 338 29 333 2.46e-59 197
Msa1145410 AT1G75900.1 33.127 323 202 6 32 348 43 357 4.66e-58 193
Msa1145410 AT3G53100.1 34.049 326 208 5 14 336 11 332 7.94e-58 192
Msa1145410 AT1G59406.1 31.322 348 223 6 7 348 5 342 1.77e-56 188
Msa1145410 AT1G59030.1 31.322 348 223 6 7 348 5 342 1.77e-56 188
Msa1145410 AT1G58725.1 31.322 348 223 6 7 348 5 342 1.77e-56 188
Msa1145410 AT2G19060.1 32.857 350 213 10 5 349 4 336 2.46e-56 188
Msa1145410 AT1G20130.2 33.437 323 197 6 32 342 184 500 3.00e-56 192
Msa1145410 AT4G10950.2 33.134 335 218 5 32 363 71 402 5.23e-56 189
Msa1145410 AT1G20130.1 33.437 323 197 6 32 342 204 520 5.62e-56 192
Msa1145410 AT1G73610.1 36.593 317 183 6 32 346 35 335 1.39e-55 186
Msa1145410 AT5G55050.1 31.765 340 220 7 33 364 40 375 5.71e-55 185
Msa1145410 AT2G40250.1 32.927 328 203 6 32 347 36 358 1.11e-54 184
Msa1145410 AT4G10950.1 32.836 335 215 5 32 363 71 398 2.77e-54 184
Msa1145410 AT1G20135.1 32.840 338 202 9 13 343 8 327 3.15e-54 182
Msa1145410 AT3G43570.1 30.321 343 204 6 7 348 5 313 4.63e-54 181
Msa1145410 AT5G63170.1 33.631 336 202 8 6 338 4 321 8.37e-54 181
Msa1145410 AT4G30140.1 35.347 331 197 7 33 363 34 347 1.51e-53 181
Msa1145410 AT3G14820.1 30.966 352 219 9 8 346 1 341 4.10e-53 179
Msa1145410 AT1G58520.3 31.138 334 207 7 21 348 19 335 6.10e-52 176
Msa1145410 AT1G58525.1 31.138 334 207 7 21 348 19 335 6.10e-52 176
Msa1145410 AT1G20132.1 31.269 323 209 7 32 348 61 376 2.69e-51 176
Msa1145410 AT1G71691.1 35.664 286 178 5 82 366 3 283 4.34e-51 172
Msa1145410 AT5G15720.3 34.074 270 172 3 95 359 59 327 5.50e-51 173
Msa1145410 AT2G19050.1 33.033 333 202 8 33 362 32 346 7.03e-51 174
Msa1145410 AT5G15720.2 38.267 277 160 6 27 297 25 296 4.14e-50 171
Msa1145410 AT2G19010.1 31.322 348 219 7 5 349 4 334 4.97e-50 171
Msa1145410 AT2G19010.2 31.609 348 218 8 5 349 34 364 8.20e-50 172
Msa1145410 AT1G71691.3 40.304 263 150 6 32 293 55 311 8.93e-49 167
Msa1145410 AT4G16230.1 41.204 216 123 3 32 245 30 243 4.96e-48 163
Msa1145410 AT2G24560.2 33.582 268 167 5 32 293 34 296 1.64e-47 164
Msa1145410 AT1G75910.1 33.144 353 209 9 8 349 5 341 3.88e-47 164
Msa1145410 AT5G40990.1 29.581 382 245 10 1 366 1 374 3.97e-47 164
Msa1145410 AT1G71120.1 32.578 353 220 11 18 364 17 357 6.28e-47 164
Msa1145410 AT1G23500.1 32.486 354 216 7 3 349 2 339 1.71e-45 159
Msa1145410 AT1G75920.2 31.143 350 216 8 10 349 7 341 4.82e-44 155
Msa1145410 AT3G14225.2 28.297 364 238 10 15 365 20 373 5.62e-44 156
Msa1145410 AT3G14225.1 28.219 365 241 9 15 365 20 377 1.55e-43 155
Msa1145410 AT2G19050.2 36.910 233 138 4 33 265 32 255 6.84e-43 150
Msa1145410 AT3G43550.1 30.743 296 189 6 4 293 1 286 4.01e-41 146
Msa1145410 AT1G75920.1 30.137 365 215 9 10 349 2 351 7.13e-41 147
Msa1145410 AT1G53920.1 31.325 332 199 14 32 349 48 364 2.94e-40 146
Msa1145410 AT1G53990.1 28.609 381 235 11 4 365 2 364 5.35e-40 145
Msa1145410 AT1G53940.2 29.830 352 216 13 32 366 39 376 1.19e-39 145
Msa1145410 AT2G03980.2 33.016 315 192 9 32 338 43 346 3.69e-39 143
Msa1145410 AT2G03980.3 33.016 315 192 9 32 338 43 346 3.69e-39 143
Msa1145410 AT2G03980.1 33.016 315 192 9 32 338 43 346 3.69e-39 143
Msa1145410 AT2G03980.4 33.016 315 192 9 32 338 43 346 3.69e-39 143
Msa1145410 AT1G75930.1 31.250 352 199 11 12 346 9 334 4.11e-39 142
Msa1145410 AT1G75920.3 29.429 350 191 9 10 349 7 310 2.29e-35 132
Msa1145410 AT2G31550.1 32.512 203 128 3 139 336 1 199 5.06e-35 128
Msa1145410 AT1G75920.4 29.568 301 187 8 59 349 28 313 3.39e-32 123
Msa1145410 AT1G54030.1 27.059 340 218 11 30 365 50 363 3.59e-29 117
Msa1145410 AT1G56670.1 29.444 360 202 16 9 338 10 347 8.47e-28 112
Msa1145410 AT5G03610.1 28.660 321 192 14 34 340 45 342 1.09e-27 112
Msa1145410 AT3G14220.1 26.648 364 229 12 12 363 14 351 3.02e-27 110
Msa1145410 AT2G04020.1 34.199 231 128 8 32 250 43 261 3.34e-27 108
Msa1145410 AT1G67830.1 27.701 361 214 13 23 351 21 366 9.24e-27 109
Msa1145410 AT1G54000.1 25.676 370 243 11 3 362 7 354 2.36e-26 108
Msa1145410 AT2G04020.2 35.885 209 116 7 32 234 43 239 4.59e-26 107
Msa1145410 AT1G09390.1 28.962 366 214 14 6 348 12 354 5.02e-26 107
Msa1145410 AT4G01130.1 26.425 386 229 14 3 353 6 371 9.28e-26 107
Msa1145410 AT3G14210.1 27.666 347 211 13 32 363 36 357 9.14e-25 104
Msa1145410 AT1G54010.1 25.676 370 245 10 3 363 7 355 1.27e-24 103
Msa1145410 AT3G26430.1 27.042 355 204 11 32 350 31 366 2.50e-24 103
Msa1145410 AT3G09930.2 26.994 326 198 12 33 342 40 341 3.38e-24 102
Msa1145410 AT3G09930.1 26.994 326 198 12 33 342 40 341 3.38e-24 102
Msa1145410 AT1G53940.1 29.670 273 167 12 32 293 39 297 4.91e-24 100
Msa1145410 AT1G54790.3 27.056 377 226 12 6 349 4 364 8.16e-24 101
Msa1145410 AT5G14450.1 26.064 376 227 13 7 349 16 373 3.07e-23 100
Msa1145410 AT1G54020.2 24.110 365 254 7 7 368 8 352 3.27e-23 99.8
Msa1145410 AT1G28610.2 26.593 361 227 14 14 349 12 359 5.01e-23 99.4
Msa1145410 AT1G28580.1 28.150 373 224 18 7 349 8 366 4.14e-22 97.1
Msa1145410 AT1G28640.1 27.778 378 232 16 5 356 7 369 7.10e-22 96.3
Msa1145410 AT2G27360.1 25.127 394 256 15 1 368 1 381 9.48e-22 95.9
Msa1145410 AT1G28650.1 26.525 377 238 15 1 349 1 366 5.86e-21 93.6
Msa1145410 AT1G28670.1 26.882 372 232 15 5 349 7 365 1.89e-20 92.0
Msa1145410 AT4G16220.1 53.763 93 41 1 32 124 30 120 2.18e-20 89.7
Msa1145410 AT1G28570.1 26.882 372 232 17 4 349 6 363 3.31e-20 91.7
Msa1145410 AT3G62280.1 27.219 338 213 12 36 358 40 359 3.47e-20 91.3
Msa1145410 AT1G28590.1 26.065 399 239 17 4 363 10 391 4.28e-20 91.3
Msa1145410 AT3G05180.1 28.042 378 220 14 16 359 20 379 6.78e-20 90.5
Msa1145410 AT1G56670.2 28.387 310 175 13 9 293 10 297 2.18e-19 87.8
Msa1145410 AT1G54790.1 25.397 378 236 11 1 349 3 363 3.94e-19 88.2
Msa1145410 AT4G16233.1 30.952 126 86 1 241 365 5 130 4.32e-19 83.2
Msa1145410 AT5G03600.1 25.152 330 216 11 33 355 15 320 5.30e-19 87.0
Msa1145410 AT5G03600.2 25.152 330 216 11 33 355 50 355 5.75e-19 87.4
Msa1145410 AT3G27950.1 26.121 379 230 14 1 350 1 358 7.37e-19 87.4
Msa1145410 AT4G01130.2 25.688 327 197 13 13 312 13 320 1.15e-18 86.3
Msa1145410 AT1G54030.2 28.740 254 147 10 30 273 50 279 1.31e-18 85.9
Msa1145410 AT4G01130.3 25.763 295 174 10 94 353 1 285 1.62e-18 85.5
Msa1145410 AT1G31550.1 26.963 382 231 19 12 365 15 376 2.51e-18 85.9
Msa1145410 AT3G48460.1 23.848 369 240 14 7 350 12 364 1.06e-17 84.0
Msa1145410 AT1G28660.2 27.128 376 224 20 5 349 7 363 3.39e-16 79.7
Msa1145410 AT1G54790.2 23.762 404 236 12 1 349 3 389 2.97e-14 73.9
Msa1145410 AT2G36325.1 25.926 324 195 12 34 340 49 344 4.59e-14 73.2
Msa1145410 AT3G14210.2 25.000 212 147 5 160 363 22 229 1.75e-13 70.5
Msa1145410 AT1G54020.1 21.831 284 202 5 87 368 1 266 2.28e-12 67.4
Msa1145410 AT1G54020.5 21.831 284 202 5 87 368 1 266 2.28e-12 67.4
Msa1145410 AT1G54020.3 21.831 284 202 5 87 368 1 266 2.28e-12 67.4
Msa1145410 AT1G28580.2 26.641 259 167 10 109 349 32 285 2.86e-12 67.4
Msa1145410 AT1G54020.4 21.801 211 160 2 160 368 10 217 6.03e-12 65.5
Msa1145410 AT3G62280.2 25.746 268 173 9 36 293 40 291 7.35e-11 62.8

Find 102 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGTTCAAGACATCTTTAA+TGG 0.232528 7_4:+22208905 Msa1145410:CDS
ATTGAATGCCGGTGTCATTA+AGG 0.296620 7_4:-22207647 None:intergenic
AATCCCAGCTGAAGCAAAAT+TGG 0.298077 7_4:-22207619 None:intergenic
GGACTCCAACGTCTAATAAA+AGG 0.304629 7_4:+22208976 Msa1145410:exon
GTCAACCTCCCTGACCTTAT+TGG 0.307047 7_4:+22206714 Msa1145410:CDS
ATCGTGATCTCTATGCCTTT+TGG 0.307769 7_4:+22208846 Msa1145410:CDS
CTTGCTACTAGGAGCATAAA+TGG 0.311041 7_4:+22208426 Msa1145410:CDS
GTCAATTGAGGACTCAAATA+TGG 0.330097 7_4:-22207573 None:intergenic
TGACGAGACCTAGCTGAAAA+TGG 0.335216 7_4:-22208060 None:intergenic
GTGACTGGAGTTGGCCCATT+GGG 0.349993 7_4:+22208387 Msa1145410:CDS
TAAAGACCTCAACACTCAAT+TGG 0.353311 7_4:+22208512 Msa1145410:CDS
CGTGCCGACTCTCCTCCTTA+TGG 0.353508 7_4:+22206645 Msa1145410:CDS
ATGATGGTGCTGAGGTTCAT+AGG 0.357633 7_4:-22208947 None:intergenic
TAGAATTGTTAATGGAGCTT+TGG 0.366372 7_4:+22207987 Msa1145410:CDS
GAGGCAAATAGAATTGTTAA+TGG 0.381254 7_4:+22207979 Msa1145410:CDS
CCTCAGCACCATCATAACTA+TGG 0.388121 7_4:+22208955 Msa1145410:CDS
GCACGTTCAGTTGGATGAAA+AGG 0.389234 7_4:-22208872 None:intergenic
GGTGAAGCTACTTACCAATA+AGG 0.392338 7_4:-22206728 None:intergenic
TCAGTATCGAAATATTCTTA+TGG 0.407584 7_4:+22208119 Msa1145410:CDS
GAGTGGAGAAGTAGGGGCTG+AGG 0.418109 7_4:+22207957 Msa1145410:CDS
CATTATGACTAACATGAGAT+TGG 0.424433 7_4:+22206482 Msa1145410:exon
TGTTTGACTTGGGAGCTAGA+AGG 0.425182 7_4:+22208358 Msa1145410:CDS
CCGGACAAAGACTATTGGTT+GGG 0.430199 7_4:+22207595 Msa1145410:CDS
AAGGCATAGAGATCACGATT+AGG 0.430298 7_4:-22208842 None:intergenic
ATTGACCGGACAAAGACTAT+TGG 0.431236 7_4:+22207590 Msa1145410:CDS
GCTAGAAGGGTGCTTGTGAC+TGG 0.431825 7_4:+22208372 Msa1145410:CDS
CATGTTCATTTGATAAGCAT+TGG 0.443194 7_4:-22208556 None:intergenic
AGGCATAGAGATCACGATTA+GGG 0.444839 7_4:-22208841 None:intergenic
TCTCACTCTCCCTCTGGTGT+TGG 0.455464 7_4:+22206506 Msa1145410:CDS
CCCACTGGCCGCTTCTCCAA+TGG 0.459515 7_4:+22206690 Msa1145410:CDS
TGTGACTGGAGTTGGCCCAT+TGG 0.460401 7_4:+22208386 Msa1145410:CDS
GTCACAAAATAAATAATTGA+AGG 0.463058 7_4:-22208999 None:intergenic
GCGGCCAGTGGGACGACGAC+CGG 0.464832 7_4:-22206679 None:intergenic
AGCTACTTACCAATAAGGTC+AGG 0.468494 7_4:-22206723 None:intergenic
CCGGGATAATCGATGCCATA+AGG 0.469097 7_4:-22206660 None:intergenic
TATCCCGGTCGTCGTCCCAC+TGG 0.471227 7_4:+22206675 Msa1145410:CDS
ATTGGTTCTCACTCTCCCTC+TGG 0.471530 7_4:+22206500 Msa1145410:CDS
AAAGACCTCAACACTCAATT+GGG 0.472936 7_4:+22208513 Msa1145410:CDS
GTTTGACTTGGGAGCTAGAA+GGG 0.473565 7_4:+22208359 Msa1145410:CDS
CAAAGATTGAGTGGAGAAGT+AGG 0.478630 7_4:+22207949 Msa1145410:CDS
CGGCCAGTGGGACGACGACC+GGG 0.479390 7_4:-22206678 None:intergenic
TGAATTTACAAATTGAATGC+CGG 0.480031 7_4:-22207658 None:intergenic
ATCACCAATCCTCAAAACTT+TGG 0.485944 7_4:+22208585 Msa1145410:CDS
AATGTTGTAGGCCAGCATAT+TGG 0.489326 7_4:+22207531 Msa1145410:intron
TAGTCATTTGAAGCAAAAGT+TGG 0.489387 7_4:-22208491 None:intergenic
GTCAGGGAGGTTGACACCAT+TGG 0.491565 7_4:-22206706 None:intergenic
TGTGGTCAAGGACGTTTCAA+TGG 0.492649 7_4:+22208785 Msa1145410:CDS
AGTCTTTGTCCGGTCAATTG+AGG 0.493197 7_4:-22207585 None:intergenic
GCGCAGGAATACAGCCCAAT+GGG 0.494022 7_4:-22208401 None:intergenic
CCCAACCAATAGTCTTTGTC+CGG 0.498329 7_4:-22207595 None:intergenic
AATCTCAAGGCACGTTCAGT+TGG 0.504819 7_4:-22208881 None:intergenic
TTCCTGCGCAACTTGCTACT+AGG 0.514387 7_4:+22208415 Msa1145410:CDS
CACGTTCAGTTGGATGAAAA+GGG 0.515016 7_4:-22208871 None:intergenic
AATGCAGAGGTTGTTTGACT+TGG 0.531483 7_4:+22208347 Msa1145410:intron
TGGATTCAAGACACATATGA+TGG 0.533761 7_4:-22209087 None:intergenic
TGATGGTGCTGAGGTTCATA+GGG 0.534811 7_4:-22208946 None:intergenic
TCGATACTGAGAGACAAGAT+AGG 0.536530 7_4:-22208106 None:intergenic
TGGAGAAGTAGGGGCTGAGG+AGG 0.538793 7_4:+22207960 Msa1145410:CDS
AGGGTGCTTGTGACTGGAGT+TGG 0.539050 7_4:+22208378 Msa1145410:CDS
ACAAGATAGGTGCAGTATTG+TGG 0.542334 7_4:-22208093 None:intergenic
AAAGATTGAGTGGAGAAGTA+GGG 0.542697 7_4:+22207950 Msa1145410:CDS
TATTTGAGTCCTCAATTGAC+CGG 0.547556 7_4:+22207576 Msa1145410:CDS
TTGGTACTTATAACACTTGG+TGG 0.548357 7_4:+22208006 Msa1145410:CDS
AAGGTAGCTTGTTGTGGTCA+AGG 0.548628 7_4:+22208773 Msa1145410:CDS
GTTGGTCACCATCATAAGCT+TGG 0.551961 7_4:+22206524 Msa1145410:CDS
TCAAGGACGTTTCAATGGCG+TGG 0.557216 7_4:+22208790 Msa1145410:CDS
GTTGGAGTCCATAGTTATGA+TGG 0.557455 7_4:-22208963 None:intergenic
TGTCACAACCAAGCTTATGA+TGG 0.558351 7_4:-22206532 None:intergenic
CTCCTAGTAGCAAGTTGCGC+AGG 0.561256 7_4:-22208417 None:intergenic
ATGCAGAGGTTGTTTGACTT+GGG 0.569527 7_4:+22208348 Msa1145410:intron
GCTTTGGTACTTATAACACT+TGG 0.569707 7_4:+22208003 Msa1145410:CDS
ACCGGACAAAGACTATTGGT+TGG 0.571235 7_4:+22207594 Msa1145410:CDS
GTTCAGATAATCCAATATGC+TGG 0.572094 7_4:-22207542 None:intergenic
AGGAGAGTCGGCACGAGCCG+TGG 0.572338 7_4:-22206637 None:intergenic
GGTTGACACCATTGGAGAAG+CGG 0.573504 7_4:-22206698 None:intergenic
TGGATGAAAAGGGTCCCAAA+AGG 0.574768 7_4:-22208861 None:intergenic
CAAGGACGTTTCAATGGCGT+GGG 0.579559 7_4:+22208791 Msa1145410:CDS
ACATCAAAGGTAGCTTGTTG+TGG 0.586343 7_4:+22208767 Msa1145410:CDS
CAATACAAACAAAGATTGAG+TGG 0.596842 7_4:+22207940 Msa1145410:CDS
CAATAATTATTTGCTAACCA+CGG 0.601650 7_4:+22206620 Msa1145410:CDS
TGCGCAGGAATACAGCCCAA+TGG 0.603938 7_4:-22208402 None:intergenic
CCATTGGAGAAGCGGCCAGT+GGG 0.605225 7_4:-22206690 None:intergenic
ACCATTGGAGAAGCGGCCAG+TGG 0.610286 7_4:-22206691 None:intergenic
CCTTATGGCATCGATTATCC+CGG 0.610524 7_4:+22206660 Msa1145410:CDS
CAGACAGAAGAAAAGTCGAA+TGG 0.621321 7_4:-22209107 None:intergenic
CATATCCCAATTGAGTGTTG+AGG 0.627543 7_4:-22208518 None:intergenic
CATAGGGCTCATAAAATCAG+AGG 0.628535 7_4:-22208930 None:intergenic
CGGACAAAGACTATTGGTTG+GGG 0.631902 7_4:+22207596 Msa1145410:CDS
GTCTTGAACGATAAATCTCA+AGG 0.633417 7_4:-22208894 None:intergenic
AAGATTGAGTGGAGAAGTAG+GGG 0.634699 7_4:+22207951 Msa1145410:CDS
GCTACTTACCAATAAGGTCA+GGG 0.640350 7_4:-22206722 None:intergenic
ATTGGAATCCTTAATGACAC+CGG 0.645495 7_4:+22207639 Msa1145410:CDS
ATTAGGGCATATGTTTGACA+AGG 0.652973 7_4:-22208825 None:intergenic
CCATAGTTATGATGGTGCTG+AGG 0.653513 7_4:-22208955 None:intergenic
AGGACTCAAATATGGTAACG+TGG 0.655940 7_4:-22207565 None:intergenic
GGATAATCGATGCCATAAGG+AGG 0.661042 7_4:-22206657 None:intergenic
GATGCCATAAGGAGGAGAGT+CGG 0.673531 7_4:-22206649 None:intergenic
TGATGGTGACCAACACCAGA+GGG 0.674515 7_4:-22206515 None:intergenic
GGTGACTCACTTGTTGACAG+TGG 0.687156 7_4:+22206594 Msa1145410:CDS
GGACTCAAATATGGTAACGT+GGG 0.688159 7_4:-22207564 None:intergenic
ATGATGGTGACCAACACCAG+AGG 0.696249 7_4:-22206516 None:intergenic
ACTTACCAATAAGGTCAGGG+AGG 0.751522 7_4:-22206719 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAAAATATTAATT+AGG + chr7_4:22207858-22207877 Msa1145410:intron 0.0%
!!! GTTTACTAAATTTTATTTAT+AGG + chr7_4:22206930-22206949 Msa1145410:intron 10.0%
!! TTTATAAAATTAAAGATGTT+TGG - chr7_4:22207098-22207117 None:intergenic 10.0%
!!! AAAAATTTTCTCAAAGAAAA+GGG + chr7_4:22206975-22206994 Msa1145410:intron 15.0%
!!! AAAATGTGAATTTTATTCTA+AGG - chr7_4:22207123-22207142 None:intergenic 15.0%
!! GTTATTCTTAGAAATAAATT+TGG + chr7_4:22207159-22207178 Msa1145410:intron 15.0%
!! AGTAAAAAATCAAATGTATT+TGG - chr7_4:22207347-22207366 None:intergenic 15.0%
!!! TTTTTTTCACAAATTATCAT+CGG + chr7_4:22207368-22207387 Msa1145410:intron 15.0%
!!! GTGATTTTGTTAAAATTGAT+TGG + chr7_4:22206831-22206850 Msa1145410:intron 20.0%
!!! GAAAAATTTTCTCAAAGAAA+AGG + chr7_4:22206974-22206993 Msa1145410:intron 20.0%
!! GTTAACATTATAATATTCCA+AGG - chr7_4:22207076-22207095 None:intergenic 20.0%
!! ATATGTAATGTATAAGAACA+CGG - chr7_4:22207252-22207271 None:intergenic 20.0%
!! ACTTCTATGTATAATTAGAT+AGG + chr7_4:22207429-22207448 Msa1145410:intron 20.0%
!! CTTCTATGTATAATTAGATA+GGG + chr7_4:22207430-22207449 Msa1145410:intron 20.0%
!! ACGTTAATTCTAAACAAATT+TGG + chr7_4:22207767-22207786 Msa1145410:intron 20.0%
!!! TTATAAGTTGGCATTAAAAT+TGG - chr7_4:22208198-22208217 None:intergenic 20.0%
!! CAAATGAAAACATTATAAGT+TGG - chr7_4:22208210-22208229 None:intergenic 20.0%
!!! ACTTATAATGTTTTCATTTG+TGG + chr7_4:22208210-22208229 Msa1145410:intron 20.0%
!! TTACAATTTACATACCATTT+AGG - chr7_4:22208329-22208348 None:intergenic 20.0%
!! GTCACAAAATAAATAATTGA+AGG - chr7_4:22209002-22209021 None:intergenic 20.0%
!! CAATAATTATTTGCTAACCA+CGG + chr7_4:22206620-22206639 Msa1145410:CDS 25.0%
!!! GTTTTGAATGACAATGATTT+TGG + chr7_4:22206790-22206809 Msa1145410:intron 25.0%
! AGTAAACTTCTAACAAACAT+AGG - chr7_4:22206917-22206936 None:intergenic 25.0%
! CCAAGGAAACATTAAAAATA+TGG - chr7_4:22207059-22207078 None:intergenic 25.0%
!!! CCATATTTTTAATGTTTCCT+TGG + chr7_4:22207056-22207075 Msa1145410:intron 25.0%
! TTCTGACATATGAAACATTA+TGG + chr7_4:22207498-22207517 Msa1145410:intron 25.0%
! TGAATTTACAAATTGAATGC+CGG - chr7_4:22207661-22207680 None:intergenic 25.0%
! TTAGGATTACAATTATATGC+AGG + chr7_4:22207876-22207895 Msa1145410:intron 25.0%
!! TCAGTATCGAAATATTCTTA+TGG + chr7_4:22208119-22208138 Msa1145410:CDS 25.0%
! ATTAATCTTGAGATGAAAGA+AGG - chr7_4:22208163-22208182 None:intergenic 25.0%
! TTCTTTCATCTCAAGATTAA+TGG + chr7_4:22208162-22208181 Msa1145410:intron 25.0%
!! TTTATTACGACACTTTGTTT+CGG + chr7_4:22208650-22208669 Msa1145410:intron 25.0%
!!! TTTTAATTGTTTGTGTAAGC+AGG + chr7_4:22208737-22208756 Msa1145410:intron 25.0%
CATTATGACTAACATGAGAT+TGG + chr7_4:22206482-22206501 Msa1145410:exon 30.0%
GAACTATCTAAAGATGAAGA+AGG - chr7_4:22206752-22206771 None:intergenic 30.0%
!!! CAATGATTTTGGCTAAAACA+TGG + chr7_4:22206801-22206820 Msa1145410:intron 30.0%
GAATTTATTCTCATGTTCGT+GGG - chr7_4:22207014-22207033 None:intergenic 30.0%
TGAATTTATTCTCATGTTCG+TGG - chr7_4:22207015-22207034 None:intergenic 30.0%
ACATGATTCTGTCAAATTCA+TGG + chr7_4:22207213-22207232 Msa1145410:intron 30.0%
GGTTGAATAATGAATGTTGT+AGG + chr7_4:22207519-22207538 Msa1145410:intron 30.0%
GATTACAATTATATGCAGGT+GGG + chr7_4:22207880-22207899 Msa1145410:intron 30.0%
CAATACAAACAAAGATTGAG+TGG + chr7_4:22207940-22207959 Msa1145410:CDS 30.0%
GAGGCAAATAGAATTGTTAA+TGG + chr7_4:22207979-22207998 Msa1145410:CDS 30.0%
TAGAATTGTTAATGGAGCTT+TGG + chr7_4:22207987-22208006 Msa1145410:CDS 30.0%
GTATGTAAATTGTAATGCAG+AGG + chr7_4:22208334-22208353 Msa1145410:intron 30.0%
! TAGTCATTTGAAGCAAAAGT+TGG - chr7_4:22208494-22208513 None:intergenic 30.0%
CATGTTCATTTGATAAGCAT+TGG - chr7_4:22208559-22208578 None:intergenic 30.0%
!! TTGATGATACCAAAGTTTTG+AGG - chr7_4:22208597-22208616 None:intergenic 30.0%
ATCAATGTCATCACATGTAT+CGG - chr7_4:22208706-22208725 None:intergenic 30.0%
ATCGTTCAAGACATCTTTAA+TGG + chr7_4:22208905-22208924 Msa1145410:CDS 30.0%
!!! TCTCGTGCTTTCTTTGTTTT+TGG + chr7_4:22206573-22206592 Msa1145410:CDS 35.0%
GTTCAGATAATCCAATATGC+TGG - chr7_4:22207545-22207564 None:intergenic 35.0%
GTCAATTGAGGACTCAAATA+TGG - chr7_4:22207576-22207595 None:intergenic 35.0%
TATTTGAGTCCTCAATTGAC+CGG + chr7_4:22207576-22207595 Msa1145410:CDS 35.0%
ATTGGAATCCTTAATGACAC+CGG + chr7_4:22207639-22207658 Msa1145410:CDS 35.0%
ACACTAATCTAACCAACTAC+TGG + chr7_4:22207720-22207739 Msa1145410:intron 35.0%
CAACTACTGGTATCATTGAA+GGG + chr7_4:22207733-22207752 Msa1145410:intron 35.0%
GGATTACAATTATATGCAGG+TGG + chr7_4:22207879-22207898 Msa1145410:intron 35.0%
AAAGATTGAGTGGAGAAGTA+GGG + chr7_4:22207950-22207969 Msa1145410:CDS 35.0%
GCTTTGGTACTTATAACACT+TGG + chr7_4:22208003-22208022 Msa1145410:CDS 35.0%
TTGGTACTTATAACACTTGG+TGG + chr7_4:22208006-22208025 Msa1145410:CDS 35.0%
! CTCTGTTCGGTAAAAAGTAT+CGG - chr7_4:22208306-22208325 None:intergenic 35.0%
TAAAGACCTCAACACTCAAT+TGG + chr7_4:22208512-22208531 Msa1145410:CDS 35.0%
AAAGACCTCAACACTCAATT+GGG + chr7_4:22208513-22208532 Msa1145410:CDS 35.0%
ATCACCAATCCTCAAAACTT+TGG + chr7_4:22208585-22208604 Msa1145410:CDS 35.0%
!!! GATACCAAAGTTTTGAGGAT+TGG - chr7_4:22208592-22208611 None:intergenic 35.0%
!!! AGCAGGTTTTGTTACATCAA+AGG + chr7_4:22208754-22208773 Msa1145410:intron 35.0%
ATTAGGGCATATGTTTGACA+AGG - chr7_4:22208828-22208847 None:intergenic 35.0%
GTCTTGAACGATAAATCTCA+AGG - chr7_4:22208897-22208916 None:intergenic 35.0%
TGGATTCAAGACACATATGA+TGG - chr7_4:22209090-22209109 None:intergenic 35.0%
! ACTTTTCTTCTGTCTGGTAA+TGG + chr7_4:22209114-22209133 Msa1145410:three_prime_UTR 35.0%
TGTCACAACCAAGCTTATGA+TGG - chr7_4:22206535-22206554 None:intergenic 40.0%
GCTACTTACCAATAAGGTCA+GGG - chr7_4:22206725-22206744 None:intergenic 40.0%
AGCTACTTACCAATAAGGTC+AGG - chr7_4:22206726-22206745 None:intergenic 40.0%
GGTGAAGCTACTTACCAATA+AGG - chr7_4:22206731-22206750 None:intergenic 40.0%
CTTGAAAACCCTATAGTGTG+TGG + chr7_4:22207186-22207205 Msa1145410:intron 40.0%
ATGTTGTGCCACACACTATA+GGG - chr7_4:22207197-22207216 None:intergenic 40.0%
TCTCATAAGTGTAGCTCAGT+TGG - chr7_4:22207400-22207419 None:intergenic 40.0%
AATGTTGTAGGCCAGCATAT+TGG + chr7_4:22207531-22207550 Msa1145410:intron 40.0%
! GGACTCAAATATGGTAACGT+GGG - chr7_4:22207567-22207586 None:intergenic 40.0%
! AGGACTCAAATATGGTAACG+TGG - chr7_4:22207568-22207587 None:intergenic 40.0%
ATTGACCGGACAAAGACTAT+TGG + chr7_4:22207590-22207609 Msa1145410:CDS 40.0%
AATCCCAGCTGAAGCAAAAT+TGG - chr7_4:22207622-22207641 None:intergenic 40.0%
! AATTTTGCTTCAGCTGGGAT+TGG + chr7_4:22207621-22207640 Msa1145410:CDS 40.0%
!! ATTGAATGCCGGTGTCATTA+AGG - chr7_4:22207650-22207669 None:intergenic 40.0%
CCTTCAATGATACCAGTAGT+TGG - chr7_4:22207735-22207754 None:intergenic 40.0%
CCAACTACTGGTATCATTGA+AGG + chr7_4:22207732-22207751 Msa1145410:intron 40.0%
CAAAGATTGAGTGGAGAAGT+AGG + chr7_4:22207949-22207968 Msa1145410:CDS 40.0%
AAGATTGAGTGGAGAAGTAG+GGG + chr7_4:22207951-22207970 Msa1145410:CDS 40.0%
! TTCTCACTCCATTTTCAGCT+AGG + chr7_4:22208052-22208071 Msa1145410:CDS 40.0%
ACAAGATAGGTGCAGTATTG+TGG - chr7_4:22208096-22208115 None:intergenic 40.0%
TCGATACTGAGAGACAAGAT+AGG - chr7_4:22208109-22208128 None:intergenic 40.0%
TTTACCGAACAGAGCCTAAA+TGG + chr7_4:22208312-22208331 Msa1145410:intron 40.0%
CATACCATTTAGGCTCTGTT+CGG - chr7_4:22208319-22208338 None:intergenic 40.0%
AATGCAGAGGTTGTTTGACT+TGG + chr7_4:22208347-22208366 Msa1145410:intron 40.0%
! ATGCAGAGGTTGTTTGACTT+GGG + chr7_4:22208348-22208367 Msa1145410:intron 40.0%
! CTTGCTACTAGGAGCATAAA+TGG + chr7_4:22208426-22208445 Msa1145410:CDS 40.0%
! CATATCCCAATTGAGTGTTG+AGG - chr7_4:22208521-22208540 None:intergenic 40.0%
!! ACATCAAAGGTAGCTTGTTG+TGG + chr7_4:22208767-22208786 Msa1145410:CDS 40.0%
AGGCATAGAGATCACGATTA+GGG - chr7_4:22208844-22208863 None:intergenic 40.0%
AAGGCATAGAGATCACGATT+AGG - chr7_4:22208845-22208864 None:intergenic 40.0%
! ATCGTGATCTCTATGCCTTT+TGG + chr7_4:22208846-22208865 Msa1145410:CDS 40.0%
! TCGTGATCTCTATGCCTTTT+GGG + chr7_4:22208847-22208866 Msa1145410:CDS 40.0%
CACGTTCAGTTGGATGAAAA+GGG - chr7_4:22208874-22208893 None:intergenic 40.0%
CATAGGGCTCATAAAATCAG+AGG - chr7_4:22208933-22208952 None:intergenic 40.0%
GTTGGAGTCCATAGTTATGA+TGG - chr7_4:22208966-22208985 None:intergenic 40.0%
GGACTCCAACGTCTAATAAA+AGG + chr7_4:22208976-22208995 Msa1145410:exon 40.0%
! GAAGGCCTTTTATTAGACGT+TGG - chr7_4:22208984-22209003 None:intergenic 40.0%
CAGACAGAAGAAAAGTCGAA+TGG - chr7_4:22209110-22209129 None:intergenic 40.0%
! CATTCGACTTTTCTTCTGTC+TGG + chr7_4:22209108-22209127 Msa1145410:three_prime_UTR 40.0%
GTTGGTCACCATCATAAGCT+TGG + chr7_4:22206524-22206543 Msa1145410:CDS 45.0%
GGATAATCGATGCCATAAGG+AGG - chr7_4:22206660-22206679 None:intergenic 45.0%
!! CCTTATGGCATCGATTATCC+CGG + chr7_4:22206660-22206679 Msa1145410:CDS 45.0%
ACTTACCAATAAGGTCAGGG+AGG - chr7_4:22206722-22206741 None:intergenic 45.0%
CATGTTGTGCCACACACTAT+AGG - chr7_4:22207198-22207217 None:intergenic 45.0%
AGTCTTTGTCCGGTCAATTG+AGG - chr7_4:22207588-22207607 None:intergenic 45.0%
ACCGGACAAAGACTATTGGT+TGG + chr7_4:22207594-22207613 Msa1145410:CDS 45.0%
CCCAACCAATAGTCTTTGTC+CGG - chr7_4:22207598-22207617 None:intergenic 45.0%
! CCGGACAAAGACTATTGGTT+GGG + chr7_4:22207595-22207614 Msa1145410:CDS 45.0%
! CGGACAAAGACTATTGGTTG+GGG + chr7_4:22207596-22207615 Msa1145410:CDS 45.0%
TGACGAGACCTAGCTGAAAA+TGG - chr7_4:22208063-22208082 None:intergenic 45.0%
!! TGTTTGACTTGGGAGCTAGA+AGG + chr7_4:22208358-22208377 Msa1145410:CDS 45.0%
!! GTTTGACTTGGGAGCTAGAA+GGG + chr7_4:22208359-22208378 Msa1145410:CDS 45.0%
!! AAGGTAGCTTGTTGTGGTCA+AGG + chr7_4:22208773-22208792 Msa1145410:CDS 45.0%
TGTGGTCAAGGACGTTTCAA+TGG + chr7_4:22208785-22208804 Msa1145410:CDS 45.0%
TGGATGAAAAGGGTCCCAAA+AGG - chr7_4:22208864-22208883 None:intergenic 45.0%
GCACGTTCAGTTGGATGAAA+AGG - chr7_4:22208875-22208894 None:intergenic 45.0%
AATCTCAAGGCACGTTCAGT+TGG - chr7_4:22208884-22208903 None:intergenic 45.0%
! TGATGGTGCTGAGGTTCATA+GGG - chr7_4:22208949-22208968 None:intergenic 45.0%
! ATGATGGTGCTGAGGTTCAT+AGG - chr7_4:22208950-22208969 None:intergenic 45.0%
! CCATAGTTATGATGGTGCTG+AGG - chr7_4:22208958-22208977 None:intergenic 45.0%
CCTCAGCACCATCATAACTA+TGG + chr7_4:22208955-22208974 Msa1145410:CDS 45.0%
! ATTGGTTCTCACTCTCCCTC+TGG + chr7_4:22206500-22206519 Msa1145410:CDS 50.0%
! TGATGGTGACCAACACCAGA+GGG - chr7_4:22206518-22206537 None:intergenic 50.0%
! ATGATGGTGACCAACACCAG+AGG - chr7_4:22206519-22206538 None:intergenic 50.0%
! GGTGACTCACTTGTTGACAG+TGG + chr7_4:22206594-22206613 Msa1145410:CDS 50.0%
GATGCCATAAGGAGGAGAGT+CGG - chr7_4:22206652-22206671 None:intergenic 50.0%
CCGGGATAATCGATGCCATA+AGG - chr7_4:22206663-22206682 None:intergenic 50.0%
GGTTGACACCATTGGAGAAG+CGG - chr7_4:22206701-22206720 None:intergenic 50.0%
GTCAACCTCCCTGACCTTAT+TGG + chr7_4:22206714-22206733 Msa1145410:CDS 50.0%
! GGGCCAATTTTGCTTCAGCT+GGG + chr7_4:22207616-22207635 Msa1145410:CDS 50.0%
!! TTCCTGCGCAACTTGCTACT+AGG + chr7_4:22208415-22208434 Msa1145410:CDS 50.0%
! CACATGTATCGGCATCGTCA+AGG - chr7_4:22208695-22208714 None:intergenic 50.0%
TCAAGGACGTTTCAATGGCG+TGG + chr7_4:22208790-22208809 Msa1145410:CDS 50.0%
CAAGGACGTTTCAATGGCGT+GGG + chr7_4:22208791-22208810 Msa1145410:CDS 50.0%
TCTCACTCTCCCTCTGGTGT+TGG + chr7_4:22206506-22206525 Msa1145410:CDS 55.0%
GTCAGGGAGGTTGACACCAT+TGG - chr7_4:22206709-22206728 None:intergenic 55.0%
! GGGGCCAATTTTGCTTCAGC+TGG + chr7_4:22207615-22207634 Msa1145410:CDS 55.0%
!! GCTAGAAGGGTGCTTGTGAC+TGG + chr7_4:22208372-22208391 Msa1145410:CDS 55.0%
! AGGGTGCTTGTGACTGGAGT+TGG + chr7_4:22208378-22208397 Msa1145410:CDS 55.0%
TGTGACTGGAGTTGGCCCAT+TGG + chr7_4:22208386-22208405 Msa1145410:CDS 55.0%
GTGACTGGAGTTGGCCCATT+GGG + chr7_4:22208387-22208406 Msa1145410:CDS 55.0%
GCGCAGGAATACAGCCCAAT+GGG - chr7_4:22208404-22208423 None:intergenic 55.0%
TGCGCAGGAATACAGCCCAA+TGG - chr7_4:22208405-22208424 None:intergenic 55.0%
CTCCTAGTAGCAAGTTGCGC+AGG - chr7_4:22208420-22208439 None:intergenic 55.0%
!! CGTGCCGACTCTCCTCCTTA+TGG + chr7_4:22206645-22206664 Msa1145410:CDS 60.0%
CCATTGGAGAAGCGGCCAGT+GGG - chr7_4:22206693-22206712 None:intergenic 60.0%
ACCATTGGAGAAGCGGCCAG+TGG - chr7_4:22206694-22206713 None:intergenic 60.0%
GAGTGGAGAAGTAGGGGCTG+AGG + chr7_4:22207957-22207976 Msa1145410:CDS 60.0%
TGGAGAAGTAGGGGCTGAGG+AGG + chr7_4:22207960-22207979 Msa1145410:CDS 60.0%
TATCCCGGTCGTCGTCCCAC+TGG + chr7_4:22206675-22206694 Msa1145410:CDS 65.0%
CCCACTGGCCGCTTCTCCAA+TGG + chr7_4:22206690-22206709 Msa1145410:CDS 65.0%
AGGAGAGTCGGCACGAGCCG+TGG - chr7_4:22206640-22206659 None:intergenic 70.0%
CGGCCAGTGGGACGACGACC+GGG - chr7_4:22206681-22206700 None:intergenic 75.0%
GCGGCCAGTGGGACGACGAC+CGG - chr7_4:22206682-22206701 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 22206444 22209185 22206444 ID=Msa1145410;Name=Msa1145410
chr7_4 mRNA 22206444 22209185 22206444 ID=Msa1145410-mRNA-1;Parent=Msa1145410;Name=Msa1145410-mRNA-1;_AED=0.10;_eAED=0.10;_QI=42|1|1|1|1|1|5|194|369
chr7_4 exon 22206444 22206735 22206444 ID=Msa1145410-mRNA-1:exon:5459;Parent=Msa1145410-mRNA-1
chr7_4 exon 22207541 22207671 22207541 ID=Msa1145410-mRNA-1:exon:5460;Parent=Msa1145410-mRNA-1
chr7_4 exon 22207898 22208140 22207898 ID=Msa1145410-mRNA-1:exon:5461;Parent=Msa1145410-mRNA-1
chr7_4 exon 22208354 22208606 22208354 ID=Msa1145410-mRNA-1:exon:5462;Parent=Msa1145410-mRNA-1
chr7_4 exon 22208759 22209185 22208759 ID=Msa1145410-mRNA-1:exon:5463;Parent=Msa1145410-mRNA-1
chr7_4 five_prime_UTR 22206444 22206485 22206444 ID=Msa1145410-mRNA-1:five_prime_utr;Parent=Msa1145410-mRNA-1
chr7_4 CDS 22206486 22206735 22206486 ID=Msa1145410-mRNA-1:cds;Parent=Msa1145410-mRNA-1
chr7_4 CDS 22207541 22207671 22207541 ID=Msa1145410-mRNA-1:cds;Parent=Msa1145410-mRNA-1
chr7_4 CDS 22207898 22208140 22207898 ID=Msa1145410-mRNA-1:cds;Parent=Msa1145410-mRNA-1
chr7_4 CDS 22208354 22208606 22208354 ID=Msa1145410-mRNA-1:cds;Parent=Msa1145410-mRNA-1
chr7_4 CDS 22208759 22208991 22208759 ID=Msa1145410-mRNA-1:cds;Parent=Msa1145410-mRNA-1
chr7_4 three_prime_UTR 22208992 22209185 22208992 ID=Msa1145410-mRNA-1:three_prime_utr;Parent=Msa1145410-mRNA-1
Gene Sequence

>Msa1145410

ATGACTAACATGAGATTGGTTCTCACTCTCCCTCTGGTGTTGGTCACCATCATAAGCTTGGTTGTGACAATGAGAGTTCAAGCTGCATCTCGTGCTTTCTTTGTTTTTGGTGACTCACTTGTTGACAGTGGCAACAATAATTATTTGCTAACCACGGCTCGTGCCGACTCTCCTCCTTATGGCATCGATTATCCCGGTCGTCGTCCCACTGGCCGCTTCTCCAATGGTGTCAACCTCCCTGACCTTATTGGCCAGCATATTGGATTATCTGAACCCACGTTACCATATTTGAGTCCTCAATTGACCGGACAAAGACTATTGGTTGGGGCCAATTTTGCTTCAGCTGGGATTGGAATCCTTAATGACACCGGCATTCAATTTGTGGGAATATTAAGAATGTTTCAACAGTTTTCGTTGTTTGAGCAATACAAACAAAGATTGAGTGGAGAAGTAGGGGCTGAGGAGGCAAATAGAATTGTTAATGGAGCTTTGGTACTTATAACACTTGGTGGTAATGATTTTGTCAACAACTATTTTCTCACTCCATTTTCAGCTAGGTCTCGTCAATTCAACGTGCCACAATACTGCACCTATCTTGTCTCTCAGTATCGAAATATTCTTATGAGGTTGTTTGACTTGGGAGCTAGAAGGGTGCTTGTGACTGGAGTTGGCCCATTGGGCTGTATTCCTGCGCAACTTGCTACTAGGAGCATAAATGGAGAGTGTGTGAATGAGATACAACAAGCTGCTCAATTTTTCAACCAACTTTTGCTTCAAATGACTAAAGACCTCAACACTCAATTGGGATATGATGTGTTTATTGTTGCCAATGCTTATCAAATGAACATGAATCTCATCACCAATCCTCAAAACTTTGGTTTTGTTACATCAAAGGTAGCTTGTTGTGGTCAAGGACGTTTCAATGGCGTGGGACTATGCACTGCCTTGTCAAACATATGCCCTAATCGTGATCTCTATGCCTTTTGGGACCCTTTTCATCCAACTGAACGTGCCTTGAGATTTATCGTTCAAGACATCTTTAATGGAACCTCTGATTTTATGAGCCCTATGAACCTCAGCACCATCATAACTATGGACTCCAACGTCTAA
Protein sequence

>Msa1145410

MTNMRLVLTLPLVLVTIISLVVTMRVQAASRAFFVFGDSLVDSGNNNYLLTTARADSPPYGIDYPGRRPTGRFSNGVNLPDLIGQHIGLSEPTLPYLSPQLTGQRLLVGANFASAGIGILNDTGIQFVGILRMFQQFSLFEQYKQRLSGEVGAEEANRIVNGALVLITLGGNDFVNNYFLTPFSARSRQFNVPQYCTYLVSQYRNILMRLFDLGARRVLVTGVGPLGCIPAQLATRSINGECVNEIQQAAQFFNQLLLQMTKDLNTQLGYDVFIVANAYQMNMNLITNPQNFGFVTSKVACCGQGRFNGVGLCTALSNICPNRDLYAFWDPFHPTERALRFIVQDIFNGTSDFMSPMNLSTIITMDSNV*