AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074800 MtrunA17_Chr1g0182811 93.478 368 9 3 1 353 4 371 0.0 683
Msa0074800 MtrunA17_Chr1g0189931 61.127 355 124 2 9 350 12 365 1.30e-167 471
Msa0074800 MtrunA17_Chr7g0275011 61.517 356 123 2 9 351 14 368 5.80e-167 470
Msa0074800 MtrunA17_Chr7g0215961 61.449 345 131 2 9 353 14 356 1.05e-163 461
Msa0074800 MtrunA17_Chr7g0274991 61.773 361 124 2 4 351 8 367 2.74e-161 456
Msa0074800 MtrunA17_Chr1g0189901 59.239 368 134 3 1 353 1 367 1.75e-160 453
Msa0074800 MtrunA17_Chr7g0275001 58.953 363 132 4 3 351 1 360 1.54e-157 446
Msa0074800 MtrunA17_Chr7g0275021 56.695 351 138 2 14 351 19 368 3.74e-155 440
Msa0074800 MtrunA17_Chr6g0457921 57.584 356 136 3 10 351 10 364 6.12e-155 439
Msa0074800 MtrunA17_Chr4g0008851 59.218 358 129 4 9 351 13 368 1.06e-152 434
Msa0074800 MtrunA17_Chr1g0189891 54.247 365 142 4 5 353 5 360 1.30e-139 400
Msa0074800 MtrunA17_Chr8g0374101 38.611 360 201 8 3 343 12 370 6.23e-73 231
Msa0074800 MtrunA17_Chr4g0068441 37.764 331 187 6 29 343 35 362 2.96e-70 223
Msa0074800 MtrunA17_Chr2g0294301 36.232 345 197 7 19 347 29 366 6.48e-70 223
Msa0074800 MtrunA17_Chr3g0131321 34.783 368 210 5 1 343 1 363 2.10e-69 222
Msa0074800 MtrunA17_Chr2g0294311 34.324 370 212 7 4 347 7 371 4.11e-69 221
Msa0074800 MtrunA17_Chr3g0077571 36.390 349 204 6 9 346 13 354 1.48e-68 219
Msa0074800 MtrunA17_Chr5g0434621 37.135 342 197 9 5 332 1 338 1.09e-64 209
Msa0074800 MtrunA17_Chr5g0438621 34.758 351 206 7 1 331 1 348 5.49e-64 207
Msa0074800 MtrunA17_Chr8g0380041 34.807 362 216 6 4 349 6 363 1.41e-63 206
Msa0074800 MtrunA17_Chr5g0432101 33.538 325 196 5 21 328 25 346 1.12e-61 201
Msa0074800 MtrunA17_Chr2g0330781 37.700 313 170 7 29 322 31 337 1.26e-61 201
Msa0074800 MtrunA17_Chr4g0017431 33.240 358 220 5 9 349 8 363 3.93e-61 200
Msa0074800 MtrunA17_Chr2g0285061 36.657 341 198 6 10 335 13 350 1.68e-60 198
Msa0074800 MtrunA17_Chr3g0105401 33.815 346 203 9 1 327 1 339 2.15e-60 197
Msa0074800 MtrunA17_Chr1g0156921 33.333 345 202 6 3 327 16 352 6.28e-60 197
Msa0074800 MtrunA17_Chr3g0086641 35.511 352 207 9 1 336 9 356 1.30e-59 196
Msa0074800 MtrunA17_Chr1g0156901 35.652 345 199 5 3 330 24 362 1.77e-59 196
Msa0074800 MtrunA17_Chr3g0092131 33.913 345 204 7 1 330 1 336 4.03e-59 194
Msa0074800 MtrunA17_Chr8g0341001 33.918 342 205 7 6 330 9 346 4.11e-59 194
Msa0074800 MtrunA17_Chr1g0156911 33.038 339 210 4 3 327 11 346 1.38e-58 193
Msa0074800 MtrunA17_Chr5g0444401 35.380 342 191 9 29 348 28 361 2.50e-58 192
Msa0074800 MtrunA17_Chr3g0077581 36.283 339 186 9 30 346 37 367 7.22e-58 191
Msa0074800 MtrunA17_Chr3g0099161 35.549 346 187 12 29 349 92 426 1.53e-57 192
Msa0074800 MtrunA17_Chr8g0371491 32.836 335 201 6 6 322 13 341 1.75e-57 190
Msa0074800 MtrunA17_Chr8g0371471 30.982 326 201 6 29 336 41 360 8.75e-57 189
Msa0074800 MtrunA17_Chr2g0320671 33.828 337 202 6 9 330 13 343 1.18e-56 188
Msa0074800 MtrunA17_Chr4g0060811 34.921 315 187 6 31 330 29 340 2.71e-56 187
Msa0074800 MtrunA17_Chr8g0371481 32.110 327 197 7 29 336 41 361 3.26e-56 187
Msa0074800 MtrunA17_Chr1g0156931 32.710 321 192 6 29 332 41 354 3.69e-56 187
Msa0074800 MtrunA17_Chr1g0156891 33.828 337 204 6 18 338 32 365 5.28e-56 186
Msa0074800 MtrunA17_Chr4g0046151 32.213 357 202 10 12 333 15 366 5.90e-56 186
Msa0074800 MtrunA17_Chr5g0438641 31.915 329 200 7 22 330 25 349 9.89e-56 186
Msa0074800 MtrunA17_Chr3g0120861 33.117 308 188 7 29 321 38 342 1.27e-55 186
Msa0074800 MtrunA17_Chr5g0438631 32.934 334 204 6 9 326 9 338 2.30e-55 184
Msa0074800 MtrunA17_Chr1g0189911 53.020 149 69 1 206 353 2 150 6.10e-55 177
Msa0074800 MtrunA17_Chr5g0405831 33.127 323 191 7 29 332 43 359 5.13e-54 181
Msa0074800 MtrunA17_Chr5g0396511 32.641 337 210 6 31 352 48 382 5.54e-54 182
Msa0074800 MtrunA17_Chr3g0142941 32.704 318 187 6 29 327 47 356 2.55e-53 180
Msa0074800 MtrunA17_Chr5g0405821 32.000 350 211 9 4 332 17 360 4.26e-53 179
Msa0074800 MtrunA17_Chr3g0099151 32.754 345 199 11 29 349 87 422 2.49e-52 178
Msa0074800 MtrunA17_Chr8g0370951 31.694 366 213 9 9 346 9 365 2.78e-52 177
Msa0074800 MtrunA17_Chr3g0099231 32.448 339 202 9 29 347 28 359 4.93e-51 174
Msa0074800 MtrunA17_Chr2g0283191 30.286 350 212 9 17 338 22 367 1.06e-50 173
Msa0074800 MtrunA17_Chr3g0085881 34.545 330 192 11 30 347 34 351 1.63e-50 172
Msa0074800 MtrunA17_Chr4g0027521 33.022 321 192 7 29 330 27 343 2.11e-50 172
Msa0074800 MtrunA17_Chr3g0142921 33.550 307 186 5 29 320 36 339 1.39e-49 169
Msa0074800 MtrunA17_Chr1g0157001 35.988 339 184 8 34 346 41 372 3.84e-49 169
Msa0074800 MtrunA17_Chr2g0301641 31.304 345 209 9 27 350 41 378 8.58e-49 169
Msa0074800 MtrunA17_Chr2g0284951 31.940 335 200 8 31 350 35 356 1.90e-47 164
Msa0074800 MtrunA17_Chr5g0437421 30.938 320 196 5 29 327 32 347 3.70e-47 163
Msa0074800 MtrunA17_Chr8g0380031 29.940 334 206 7 31 349 86 406 1.02e-43 155
Msa0074800 MtrunA17_Chr8g0370981 28.186 408 223 9 3 348 19 418 2.19e-43 155
Msa0074800 MtrunA17_Chr8g0349341 32.143 336 200 11 29 346 37 362 3.83e-43 153
Msa0074800 MtrunA17_Chr8g0344931 28.767 365 231 10 3 349 8 361 3.93e-43 153
Msa0074800 MtrunA17_Chr5g0420811 31.909 351 195 12 5 331 6 336 7.13e-43 152
Msa0074800 MtrunA17_Chr2g0285001 29.189 370 230 10 1 350 5 362 4.45e-42 150
Msa0074800 MtrunA17_Chr2g0284921 31.803 305 183 6 31 320 36 330 1.37e-41 149
Msa0074800 MtrunA17_Chr7g0228261 64.130 92 33 0 260 351 3 94 7.47e-41 139
Msa0074800 MtrunA17_Chr2g0284991 28.487 337 216 8 31 351 35 362 2.78e-40 145
Msa0074800 MtrunA17_Chr8g0370961 32.759 232 144 4 119 346 19 242 3.19e-38 137
Msa0074800 MtrunA17_Chr8g0349321 29.377 337 208 10 29 346 37 362 6.09e-38 139
Msa0074800 MtrunA17_Chr3g0085231 27.095 358 232 9 4 347 6 348 1.61e-37 137
Msa0074800 MtrunA17_Chr2g0284941 29.290 338 189 10 31 350 35 340 1.68e-37 137
Msa0074800 MtrunA17_Chr8g0344941 27.195 353 222 13 9 336 19 361 2.59e-35 132
Msa0074800 MtrunA17_Chr1g0189921 56.897 116 36 2 9 111 11 125 3.31e-35 125
Msa0074800 MtrunA17_Chr6g0459921 30.453 243 162 7 111 349 122 361 2.37e-33 127
Msa0074800 MtrunA17_Chr6g0455661 28.755 233 162 4 119 349 242 472 5.76e-33 127
Msa0074800 MtrunA17_Chr6g0455661 39.831 118 57 5 1 108 6 119 5.01e-12 67.0
Msa0074800 MtrunA17_Chr4g0027571 30.516 213 144 3 120 330 3 213 3.01e-31 117
Msa0074800 MtrunA17_Chr8g0349301 31.579 285 165 10 29 297 37 307 4.22e-31 120
Msa0074800 MtrunA17_Chr8g0349331 27.729 339 183 10 29 347 35 331 2.45e-29 115
Msa0074800 MtrunA17_Chr1g0160031 30.541 370 212 14 1 333 7 368 2.97e-28 113
Msa0074800 MtrunA17_Chr8g0381581 27.297 370 220 13 3 333 15 374 9.93e-26 106
Msa0074800 MtrunA17_Chr2g0283481 28.267 375 229 14 4 346 22 388 3.80e-25 105
Msa0074800 MtrunA17_Chr7g0229591 32.955 176 102 3 29 191 30 202 6.39e-23 95.1
Msa0074800 MtrunA17_Chr6g0450721 27.548 363 215 14 1 334 4 347 7.93e-23 97.8
Msa0074800 MtrunA17_Chr6g0450731 26.611 357 228 11 1 334 4 349 7.71e-22 95.1
Msa0074800 MtrunA17_Chr2g0283501 27.762 353 220 16 11 333 13 360 9.58e-22 95.1
Msa0074800 MtrunA17_Chr1g0160011 29.235 366 217 14 1 333 13 369 2.81e-21 94.0
Msa0074800 MtrunA17_Chr1g0159971 26.542 373 211 16 9 333 21 378 2.89e-21 94.0
Msa0074800 MtrunA17_Chr1g0198351 25.634 355 204 15 1 322 8 335 3.78e-21 93.2
Msa0074800 MtrunA17_Chr7g0275291 28.000 350 191 13 28 334 32 363 8.89e-21 92.4
Msa0074800 MtrunA17_Chr5g0440501 25.210 238 168 4 119 347 13 249 1.11e-20 90.1
Msa0074800 MtrunA17_Chr7g0254461 26.598 391 219 18 6 344 16 390 2.48e-20 91.3
Msa0074800 MtrunA17_Chr1g0159991 29.630 297 169 12 78 342 89 377 5.79e-20 90.1
Msa0074800 MtrunA17_Chr6g0450701 27.005 374 222 14 1 334 4 366 5.93e-20 90.1
Msa0074800 MtrunA17_Chr7g0229581 30.612 147 100 2 194 338 8 154 6.88e-20 85.5
Msa0074800 MtrunA17_Chr1g0160101 26.562 384 231 16 1 344 14 386 8.15e-20 89.7
Msa0074800 MtrunA17_Chr7g0266061 25.301 332 189 15 29 330 42 344 2.10e-19 88.2
Msa0074800 MtrunA17_Chr2g0283511 27.273 363 219 13 6 333 9 361 2.44e-19 88.2
Msa0074800 MtrunA17_Chr6g0450711 28.116 345 192 14 29 334 122 449 3.16e-19 88.6
Msa0074800 MtrunA17_Chr7g0271551 25.746 268 173 10 79 332 95 350 4.62e-19 87.4
Msa0074800 MtrunA17_Chr1g0191461 28.338 367 213 17 2 330 5 359 5.90e-19 87.0
Msa0074800 MtrunA17_Chr1g0178931 23.582 335 210 13 19 330 27 338 9.38e-18 83.2
Msa0074800 MtrunA17_Chr8g0352901 25.737 373 220 13 4 334 3 360 1.21e-17 83.2
Msa0074800 MtrunA17_Chr1g0178941 23.324 343 209 13 19 330 30 349 1.83e-17 82.4
Msa0074800 MtrunA17_Chr7g0273101 26.934 349 195 13 29 333 29 361 9.83e-17 80.5
Msa0074800 MtrunA17_Chr1g0159981 26.098 387 230 15 1 342 12 387 9.53e-16 77.8
Msa0074800 MtrunA17_Chr7g0226941 26.271 354 208 16 29 341 33 374 5.63e-15 75.5
Msa0074800 MtrunA17_Chr2g0283531 27.988 343 195 19 29 333 31 359 1.41e-14 74.3
Msa0074800 MtrunA17_Chr2g0321991 39.496 119 46 5 5 102 6 119 1.51e-14 69.7
Msa0074800 MtrunA17_Chr4g0027561 35.246 122 64 2 4 112 7 126 2.39e-14 69.7
Msa0074800 MtrunA17_Chr2g0301581 26.667 345 181 12 29 333 34 346 4.71e-14 72.4
Msa0074800 MtrunA17_Chr3g0112691 25.664 339 208 15 28 334 29 355 9.31e-14 71.6
Msa0074800 MtrunA17_Chr6g0469521 32.258 124 82 2 191 312 29 152 9.95e-14 68.2
Msa0074800 MtrunA17_Chr4g0018571 35.000 140 89 2 190 327 27 166 1.64e-13 68.2
Msa0074800 MtrunA17_Chr8g0339251 26.498 317 200 11 4 301 3 305 2.98e-13 69.7
Msa0074800 MtrunA17_Chr3g0093031 24.629 337 214 13 28 333 29 356 3.92e-13 69.7
Msa0074800 MtrunA17_Chr8g0370971 36.066 122 60 3 4 108 14 134 5.54e-13 66.2
Msa0074800 MtrunA17_Chr3g0112821 24.699 332 215 13 28 333 29 351 1.04e-12 68.6
Msa0074800 MtrunA17_Chr6g0469511 37.719 114 54 2 29 129 30 139 3.10e-12 63.5
Msa0074800 MtrunA17_Chr3g0104831 23.792 269 173 10 88 333 33 292 3.15e-11 63.5
Msa0074800 MtrunA17_Chr2g0301571 25.581 301 160 10 67 333 32 302 4.19e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074800 AT5G33370.1 60.942 361 127 2 4 351 5 364 2.43e-165 466
Msa0074800 AT3G04290.1 61.582 354 124 2 11 352 11 364 7.59e-160 452
Msa0074800 AT4G28780.1 60.388 361 123 5 11 353 9 367 1.85e-158 449
Msa0074800 AT5G18430.1 59.942 347 125 2 17 349 16 362 4.92e-151 430
Msa0074800 AT5G33370.2 58.188 287 106 2 4 277 5 290 2.03e-117 343
Msa0074800 AT2G23540.1 37.297 370 201 7 11 349 18 387 6.36e-74 234
Msa0074800 AT3G50400.1 38.793 348 193 7 16 343 21 368 1.84e-71 227
Msa0074800 AT5G37690.2 37.612 335 198 7 4 331 1 331 3.63e-69 220
Msa0074800 AT5G37690.1 36.735 343 198 7 4 331 1 339 8.86e-68 217
Msa0074800 AT5G15720.1 36.364 341 201 6 24 349 25 364 3.42e-67 216
Msa0074800 AT5G08460.1 36.826 334 195 5 29 346 49 382 1.79e-65 212
Msa0074800 AT1G29670.1 37.222 360 199 7 9 349 12 363 3.12e-64 208
Msa0074800 AT1G71250.1 35.196 358 214 5 4 346 16 370 7.65e-64 207
Msa0074800 AT1G29670.2 37.222 360 199 7 9 349 80 431 1.19e-63 209
Msa0074800 AT1G71691.2 37.126 334 194 6 29 350 55 384 2.97e-63 206
Msa0074800 AT1G33811.1 36.164 365 207 8 3 346 8 367 3.57e-63 206
Msa0074800 AT1G06990.1 32.869 359 203 6 9 332 2 357 1.01e-62 204
Msa0074800 AT1G29660.1 35.912 362 204 9 9 349 10 364 3.10e-62 203
Msa0074800 AT1G75890.2 34.384 349 202 9 4 332 22 363 3.76e-62 203
Msa0074800 AT2G30220.1 34.700 317 183 6 29 326 33 344 1.22e-61 201
Msa0074800 AT1G75890.3 34.384 349 202 9 4 332 51 392 1.38e-61 202
Msa0074800 AT2G04570.1 33.626 342 207 7 9 334 8 345 1.49e-61 201
Msa0074800 AT5G03810.1 33.621 348 211 6 1 331 1 345 2.58e-60 198
Msa0074800 AT2G42990.1 35.294 340 198 9 8 331 8 341 3.54e-60 197
Msa0074800 AT5G03820.1 35.938 320 185 5 29 331 33 349 1.13e-59 196
Msa0074800 AT1G74460.1 35.913 323 188 7 31 338 25 343 2.72e-59 196
Msa0074800 AT5G03820.2 36.050 319 184 5 29 330 61 376 3.36e-59 196
Msa0074800 AT5G42170.1 33.648 318 190 5 29 331 50 361 4.36e-59 195
Msa0074800 AT2G30310.1 33.438 317 187 6 29 326 34 345 6.72e-59 194
Msa0074800 AT1G75890.1 32.964 361 204 9 4 332 22 376 7.69e-59 195
Msa0074800 AT1G75880.1 34.985 323 185 7 29 332 52 368 1.36e-58 194
Msa0074800 AT5G45670.1 35.905 337 195 6 1 322 4 334 3.72e-58 192
Msa0074800 AT3G16370.1 34.516 310 184 6 29 322 30 336 7.76e-58 191
Msa0074800 AT1G75880.2 34.675 323 185 8 29 332 52 367 1.07e-57 191
Msa0074800 AT5G41890.1 33.611 360 205 9 13 343 15 369 1.15e-56 189
Msa0074800 AT4G26790.1 33.117 308 188 5 29 321 29 333 2.52e-56 187
Msa0074800 AT4G26790.2 33.117 308 188 5 29 321 29 333 2.52e-56 187
Msa0074800 AT1G58430.1 32.399 321 199 5 22 326 28 346 3.73e-56 187
Msa0074800 AT5G45950.1 33.333 342 210 8 7 336 18 353 6.20e-56 186
Msa0074800 AT1G20120.1 32.911 316 192 7 29 328 78 389 7.54e-56 187
Msa0074800 AT2G24560.1 31.861 317 192 6 29 326 34 345 8.27e-55 184
Msa0074800 AT5G45960.1 31.776 321 195 6 22 322 40 356 8.29e-55 184
Msa0074800 AT2G31540.1 32.081 346 207 7 4 326 6 346 8.99e-55 184
Msa0074800 AT5G22810.1 32.641 337 204 7 14 331 19 351 9.85e-55 183
Msa0074800 AT1G75900.1 32.198 323 192 8 29 332 43 357 5.07e-53 179
Msa0074800 AT4G18970.1 34.853 307 184 5 30 322 29 333 7.35e-53 179
Msa0074800 AT4G18970.2 34.853 307 184 5 30 322 29 333 3.35e-52 178
Msa0074800 AT3G53100.1 33.766 308 184 6 29 320 29 332 4.13e-52 176
Msa0074800 AT5G15720.3 34.074 270 172 3 79 343 59 327 6.51e-52 175
Msa0074800 AT1G71691.1 35.842 279 175 4 73 350 8 283 1.36e-51 173
Msa0074800 AT4G10950.1 32.024 331 210 6 29 347 71 398 1.96e-51 176
Msa0074800 AT4G10950.2 31.532 333 213 5 29 347 71 402 1.37e-50 174
Msa0074800 AT2G40250.1 31.402 328 195 7 29 331 36 358 4.27e-49 169
Msa0074800 AT1G59406.1 29.310 348 217 7 4 332 5 342 5.54e-49 168
Msa0074800 AT1G59030.1 29.310 348 217 7 4 332 5 342 5.54e-49 168
Msa0074800 AT1G58725.1 29.310 348 217 7 4 332 5 342 5.54e-49 168
Msa0074800 AT1G73610.1 34.700 317 176 7 29 330 35 335 2.09e-48 166
Msa0074800 AT1G20130.2 31.579 323 190 7 29 326 184 500 4.73e-48 169
Msa0074800 AT1G20130.1 31.579 323 190 7 29 326 204 520 6.64e-48 169
Msa0074800 AT5G63170.1 31.845 336 195 9 3 322 4 321 3.18e-47 163
Msa0074800 AT3G43570.1 28.280 343 198 7 4 332 5 313 8.86e-47 162
Msa0074800 AT1G20135.1 31.065 338 195 11 10 327 8 327 9.22e-47 162
Msa0074800 AT5G55050.1 29.118 340 216 8 30 348 40 375 1.19e-46 163
Msa0074800 AT2G19060.1 31.322 348 208 11 2 333 4 336 2.22e-46 161
Msa0074800 AT3G14820.1 29.261 352 212 10 5 330 1 341 2.40e-46 161
Msa0074800 AT4G30140.1 33.333 330 192 8 30 347 34 347 1.30e-45 159
Msa0074800 AT5G15720.2 36.630 273 157 6 24 281 25 296 2.49e-45 157
Msa0074800 AT1G58520.3 29.042 334 201 8 18 332 19 335 1.45e-44 156
Msa0074800 AT1G58525.1 29.042 334 201 8 18 332 19 335 1.45e-44 156
Msa0074800 AT1G20132.1 29.503 322 203 9 29 332 61 376 1.01e-42 152
Msa0074800 AT1G71691.3 38.403 263 142 7 29 277 55 311 1.49e-42 150
Msa0074800 AT4G16230.1 39.352 216 114 4 29 229 30 243 5.92e-42 147
Msa0074800 AT2G24560.2 31.716 268 159 6 29 277 34 296 5.63e-41 146
Msa0074800 AT2G19010.1 29.310 348 213 8 2 333 4 334 1.25e-40 146
Msa0074800 AT2G19010.2 29.598 348 212 9 2 333 34 364 2.35e-40 146
Msa0074800 AT1G53990.1 28.302 371 236 10 1 349 2 364 3.16e-40 145
Msa0074800 AT2G19050.1 31.325 332 196 11 30 346 32 346 3.18e-40 145
Msa0074800 AT5G40990.1 29.446 343 216 11 29 350 37 374 3.61e-40 145
Msa0074800 AT1G71120.1 31.034 348 209 12 15 343 17 352 2.73e-39 143
Msa0074800 AT1G75910.1 31.728 353 201 10 5 333 5 341 3.42e-39 142
Msa0074800 AT3G14225.2 26.870 361 234 10 12 349 20 373 4.21e-39 142
Msa0074800 AT3G14225.1 26.796 362 237 9 12 349 20 377 1.27e-38 141
Msa0074800 AT1G75920.2 30.000 350 207 9 7 333 7 341 1.83e-37 137
Msa0074800 AT1G23500.1 32.716 324 186 9 26 333 32 339 2.34e-37 137
Msa0074800 AT1G75920.1 28.767 365 207 9 7 333 2 351 3.47e-35 132
Msa0074800 AT2G31550.1 32.020 203 129 3 123 320 1 199 9.12e-35 127
Msa0074800 AT3G43550.1 28.378 296 183 7 1 277 1 286 9.06e-34 126
Msa0074800 AT1G53920.1 29.969 327 197 13 29 333 48 364 1.58e-33 128
Msa0074800 AT1G53940.2 28.324 346 216 13 29 350 39 376 2.10e-33 127
Msa0074800 AT1G75920.3 29.377 337 195 9 7 333 7 310 1.53e-32 124
Msa0074800 AT2G19050.2 34.043 235 135 7 30 252 32 258 2.20e-32 122
Msa0074800 AT1G75930.1 30.523 344 199 12 9 330 9 334 6.13e-32 123
Msa0074800 AT2G03980.2 30.794 315 186 10 29 322 43 346 1.38e-31 122
Msa0074800 AT2G03980.3 30.794 315 186 10 29 322 43 346 1.38e-31 122
Msa0074800 AT2G03980.1 30.794 315 186 10 29 322 43 346 1.38e-31 122
Msa0074800 AT2G03980.4 30.794 315 186 10 29 322 43 346 1.38e-31 122
Msa0074800 AT1G75920.4 28.239 301 178 9 56 333 28 313 9.28e-26 105
Msa0074800 AT1G56670.1 27.901 362 192 17 6 322 10 347 2.92e-23 99.8
Msa0074800 AT1G54030.1 26.426 333 216 12 27 349 50 363 3.07e-23 100
Msa0074800 AT1G67830.1 27.731 357 206 15 20 335 21 366 5.92e-23 99.0
Msa0074800 AT1G54790.3 27.419 372 218 13 3 333 4 364 4.78e-22 96.3
Msa0074800 AT1G09390.1 27.717 368 203 15 3 332 12 354 7.00e-22 95.9
Msa0074800 AT5G03610.1 27.103 321 184 15 31 324 45 342 2.65e-21 94.0
Msa0074800 AT4G01130.1 25.806 372 219 14 10 337 13 371 1.02e-20 92.8
Msa0074800 AT2G04020.1 31.441 229 124 8 29 234 43 261 1.19e-20 90.5
Msa0074800 AT3G14220.1 25.208 361 227 12 9 348 14 352 3.95e-20 90.9
Msa0074800 AT1G54010.1 25.410 366 230 12 4 347 11 355 1.00e-19 89.7
Msa0074800 AT3G14210.1 26.822 343 206 13 29 347 36 357 1.11e-19 89.7
Msa0074800 AT2G04020.2 32.850 207 112 7 29 218 43 239 1.19e-19 89.0
Msa0074800 AT4G16233.1 32.500 120 80 1 225 343 5 124 3.10e-19 83.2
Msa0074800 AT3G26430.1 26.667 345 205 11 29 334 31 366 9.27e-19 87.0
Msa0074800 AT5G14450.1 24.798 371 225 13 4 333 16 373 1.28e-18 86.7
Msa0074800 AT4G01130.3 25.424 295 175 10 78 337 1 285 3.63e-18 84.3
Msa0074800 AT1G53940.1 27.715 267 167 12 29 277 39 297 6.19e-18 83.6
Msa0074800 AT1G28600.1 26.471 340 206 16 28 333 30 359 1.29e-17 83.6
Msa0074800 AT3G09930.2 25.305 328 188 14 30 326 40 341 2.04e-17 82.8
Msa0074800 AT3G09930.1 25.305 328 188 14 30 326 40 341 2.04e-17 82.8
Msa0074800 AT1G54790.1 24.119 369 220 9 9 333 11 363 2.36e-17 82.8
Msa0074800 AT1G54020.2 22.865 363 248 8 4 352 8 352 4.56e-17 82.0
Msa0074800 AT1G28610.2 25.070 359 222 14 11 333 12 359 1.49e-16 80.5
Msa0074800 AT3G62280.1 26.807 332 209 12 33 342 40 359 1.92e-16 80.1
Msa0074800 AT3G05180.1 27.614 373 215 15 13 343 20 379 2.75e-16 79.7
Msa0074800 AT3G27950.1 25.405 370 223 14 2 334 5 358 8.56e-16 78.2
Msa0074800 AT1G28580.1 26.542 373 217 19 4 333 8 366 1.73e-15 77.4
Msa0074800 AT1G31550.2 27.177 379 224 22 9 349 15 379 3.57e-15 76.6
Msa0074800 AT1G28590.1 25.635 394 234 18 1 347 10 391 3.90e-15 76.3
Msa0074800 AT1G56670.2 26.603 312 165 14 6 277 10 297 5.02e-15 75.1
Msa0074800 AT1G28670.1 26.230 366 229 16 2 333 7 365 5.44e-15 75.9
Msa0074800 AT1G28650.1 25.691 362 231 16 5 333 10 366 7.29e-15 75.5
Msa0074800 AT5G03600.2 24.695 328 207 12 30 339 50 355 1.97e-14 73.9
Msa0074800 AT5G03600.1 24.695 328 207 12 30 339 15 320 2.53e-14 73.6
Msa0074800 AT3G48460.1 22.343 367 235 13 4 334 12 364 7.35e-14 72.4
Msa0074800 AT1G28570.1 25.886 367 229 18 1 333 6 363 7.76e-14 72.4
Msa0074800 AT3G14210.2 25.472 212 146 5 144 347 22 229 1.73e-13 70.1
Msa0074800 AT4G16220.1 47.312 93 34 2 29 108 30 120 1.93e-13 69.7
Msa0074800 AT1G28660.1 26.757 370 221 20 2 333 7 364 2.43e-13 70.9
Msa0074800 AT1G54020.1 21.831 284 202 5 71 352 1 266 4.47e-13 69.3
Msa0074800 AT1G54020.5 21.831 284 202 5 71 352 1 266 4.47e-13 69.3
Msa0074800 AT1G54020.3 21.831 284 202 5 71 352 1 266 4.47e-13 69.3
Msa0074800 AT1G28580.2 26.641 259 167 10 93 333 32 285 9.02e-13 68.6
Msa0074800 AT1G54020.4 21.801 211 160 2 144 352 10 217 1.14e-12 67.4
Msa0074800 AT1G54030.2 27.966 236 143 10 27 252 50 268 1.30e-12 68.2
Msa0074800 AT1G54790.2 22.532 395 220 10 9 333 11 389 1.49e-12 68.6
Msa0074800 AT1G31550.1 26.913 379 222 23 9 349 15 376 1.75e-12 68.6
Msa0074800 AT1G28660.2 26.757 370 220 21 2 333 7 363 6.90e-12 66.6

Find 90 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGTTCAAGACATCTTTAA+TGG 0.232528 1_2:-49751648 Msa0074800:CDS
CTTGCTACTAGGAGCATAAA+TGG 0.270220 1_2:-49752185 Msa0074800:CDS
ATTGAATGCCGGTGTCATTA+AGG 0.296620 1_2:+49752927 None:intergenic
AATCCCAGCTGAAGCAAAAT+TGG 0.299331 1_2:+49752955 None:intergenic
GGACTCCAACGTCTAATAAA+AGG 0.304629 1_2:-49751577 Msa0074800:exon
ATCGTGATCTCTATGCCTTT+TGG 0.307769 1_2:-49751707 Msa0074800:CDS
GTCAATTGAGGACTCAAATA+TGG 0.330097 1_2:+49753001 None:intergenic
TGACGAGACCTAGCTGAAAA+TGG 0.335216 1_2:+49752557 None:intergenic
CAGTTGGGAGTTGAGGTCTT+TGG 0.346612 1_2:+49752100 None:intergenic
CGTGCCGACTCTCCTCCTTA+TGG 0.353508 1_2:-49754889 Msa0074800:CDS
ATGATGGTGCTGAGGTTCAT+AGG 0.355461 1_2:+49751606 None:intergenic
TAGAATTGTTAAAGGAGCTT+TGG 0.361991 1_2:-49752630 Msa0074800:CDS
CAAAGACCTCAACTCCCAAC+TGG 0.388782 1_2:-49752099 Msa0074800:CDS
GCACGTTCAGTTGGATGAAA+AGG 0.389234 1_2:+49751681 None:intergenic
GAGGCAAATAGAATTGTTAA+AGG 0.389893 1_2:-49752638 Msa0074800:CDS
GAGTGGAGAAGTAGGGGCTG+AGG 0.418109 1_2:-49752660 Msa0074800:CDS
GTGACTGGAGTTGGTCCATT+GGG 0.419810 1_2:-49752224 Msa0074800:CDS
CATTATGACTAACATGAGAT+TGG 0.424433 1_2:-49755052 None:intergenic
AAGGCATAGAGATCACGATT+AGG 0.430298 1_2:+49751711 None:intergenic
ATTGACCGGACAAAGACTAT+TGG 0.431236 1_2:-49752984 Msa0074800:CDS
GCTAGAAGGGTGCTTGTGAC+TGG 0.431825 1_2:-49752239 Msa0074800:CDS
CATGTTCATTTGATAAGCAT+TGG 0.443194 1_2:+49752055 None:intergenic
AGGCATAGAGATCACGATTA+GGG 0.444839 1_2:+49751712 None:intergenic
TCTCACTCTCCCTCTGGTGT+TGG 0.455464 1_2:-49755028 Msa0074800:CDS
GTCACAAAATAAATAATTGA+AGG 0.463058 1_2:+49751554 None:intergenic
TGTTTGACTTGGGAGCTAGA+AGG 0.465863 1_2:-49752253 Msa0074800:CDS
CCGGGATAATCGATGCCATA+AGG 0.469097 1_2:+49754874 None:intergenic
ATTGGTTCTCACTCTCCCTC+TGG 0.471530 1_2:-49755034 Msa0074800:CDS
GTTTGACTTGGGAGCTAGAA+GGG 0.473565 1_2:-49752252 Msa0074800:CDS
TGTGACTGGAGTTGGTCCAT+TGG 0.477476 1_2:-49752225 Msa0074800:CDS
CAAAGATTGAGTGGAGAAGT+AGG 0.478630 1_2:-49752668 Msa0074800:CDS
TGAATTTACAAATTGAATGC+CGG 0.480031 1_2:+49752916 None:intergenic
AATGTTGTAGGCCAGCATAT+TGG 0.489326 1_2:-49753043 Msa0074800:intron
AATGCAGCGGTTGTTTGACT+TGG 0.491036 1_2:-49752264 Msa0074800:intron
TACCAGACAGAAAAGTCAAA+TGG 0.492117 1_2:+49751446 None:intergenic
TGTGGTCAAGGACGTTTCAA+TGG 0.492649 1_2:-49751768 Msa0074800:CDS
AGTCTTTGTCCGGTCAATTG+AGG 0.493197 1_2:+49752989 None:intergenic
CACATCCCAGTTGGGAGTTG+AGG 0.499260 1_2:+49752093 None:intergenic
TCCAACCAATAGTCTTTGTC+CGG 0.503373 1_2:+49752979 None:intergenic
AATCTCAAGGCACGTTCAGT+TGG 0.504819 1_2:+49751672 None:intergenic
TGGTCATTTGAAGCAAAAGC+TGG 0.507639 1_2:+49752120 None:intergenic
CACGTTCAGTTGGATGAAAA+GGG 0.515016 1_2:+49751682 None:intergenic
TGATGGTGCTGAGGTTCATA+GGG 0.520237 1_2:+49751607 None:intergenic
TTCCTGCTCAACTTGCTACT+AGG 0.521510 1_2:-49752196 Msa0074800:CDS
CTCCTAGTAGCAAGTTGAGC+AGG 0.524518 1_2:+49752194 None:intergenic
TATCCCGGTCGTCGTCCCAC+CGG 0.525761 1_2:-49754859 Msa0074800:intron
TGGATTCAAGACACATATGA+TGG 0.526941 1_2:+49751466 None:intergenic
TCGATACTGAGAGACAAGAT+AGG 0.536530 1_2:+49752511 None:intergenic
TGGAGAAGTAGGGGCTGAGG+AGG 0.538793 1_2:-49752657 Msa0074800:CDS
ATCACCAATCCTCAAAACTT+CGG 0.541610 1_2:-49752026 Msa0074800:intron
ACAAGATAGGTGCAGTATTG+TGG 0.542334 1_2:+49752524 None:intergenic
AAAGATTGAGTGGAGAAGTA+GGG 0.542697 1_2:-49752667 Msa0074800:CDS
AGGGTGCTTGTGACTGGAGT+TGG 0.543782 1_2:-49752233 Msa0074800:CDS
TATTTGAGTCCTCAATTGAC+CGG 0.547556 1_2:-49752998 Msa0074800:CDS
GTTGGAGTCCATAGCTATGA+TGG 0.547853 1_2:+49751590 None:intergenic
TTGGTACTTATAACACTTGG+TGG 0.548357 1_2:-49752611 Msa0074800:CDS
AAGGTAGCTTGTTGTGGTCA+AGG 0.548628 1_2:-49751780 Msa0074800:CDS
GTTGGTCACCATCATAAGCT+TGG 0.551961 1_2:-49755010 Msa0074800:CDS
TAAACACATCACATCCCAGT+TGG 0.553329 1_2:+49752084 None:intergenic
TCAAGGACGTTTCAATGGCG+TGG 0.557216 1_2:-49751763 Msa0074800:CDS
AAACACATCACATCCCAGTT+GGG 0.558231 1_2:+49752085 None:intergenic
TGTCACAACCAAGCTTATGA+TGG 0.558351 1_2:+49755002 None:intergenic
CCTCAGCACCATCATAGCTA+TGG 0.565595 1_2:-49751598 Msa0074800:CDS
ATGCAGCGGTTGTTTGACTT+GGG 0.570346 1_2:-49752263 Msa0074800:intron
GTTCAGATAATCCAATATGC+TGG 0.572094 1_2:+49753032 None:intergenic
AGGAGAGTCGGCACGAGCCG+TGG 0.572338 1_2:+49754897 None:intergenic
TGGATGAAAAGGGTCCCAAA+AGG 0.574768 1_2:+49751692 None:intergenic
GCTTTGGTACTTATAACACT+TGG 0.576416 1_2:-49752614 Msa0074800:CDS
ACCGGACAAAGACTATTGGT+TGG 0.578142 1_2:-49752980 Msa0074800:CDS
CAAGGACGTTTCAATGGCGT+GGG 0.579559 1_2:-49751762 Msa0074800:CDS
TCAGTATCGAAATATTCTTA+CGG 0.585575 1_2:-49752498 Msa0074800:intron
ACATCAAAGGTAGCTTGTTG+TGG 0.586343 1_2:-49751786 Msa0074800:CDS
CAATACAAACAAAGATTGAG+TGG 0.596842 1_2:-49752677 Msa0074800:CDS
CAATAATTATTTGCTAACCA+CGG 0.601650 1_2:-49754914 Msa0074800:CDS
CCTTATGGCATCGATTATCC+CGG 0.610524 1_2:-49754874 Msa0074800:CDS
AAAGACCTCAACTCCCAACT+GGG 0.615805 1_2:-49752098 Msa0074800:CDS
CATAGGGCTCATAAAATCAG+AGG 0.628535 1_2:+49751623 None:intergenic
GTCTTGAACGATAAATCTCA+AGG 0.633417 1_2:+49751659 None:intergenic
AAGATTGAGTGGAGAAGTAG+GGG 0.634699 1_2:-49752666 Msa0074800:CDS
ATTGGAATCCTTAATGACAC+CGG 0.645495 1_2:-49752935 Msa0074800:CDS
ATTAGGGCATATGTTTGACA+AGG 0.652973 1_2:+49751728 None:intergenic
CCATAGCTATGATGGTGCTG+AGG 0.653327 1_2:+49751598 None:intergenic
AGGACTCAAATATGGTAACG+TGG 0.655940 1_2:+49753009 None:intergenic
GGATAATCGATGCCATAAGG+AGG 0.661042 1_2:+49754877 None:intergenic
TGAGCAGGAATACAACCCAA+TGG 0.661729 1_2:+49752209 None:intergenic
GATGCCATAAGGAGGAGAGT+CGG 0.673531 1_2:+49754885 None:intergenic
TGATGGTGACCAACACCAGA+GGG 0.674515 1_2:+49755019 None:intergenic
GGTGACTCACTTGTTGACAG+TGG 0.687156 1_2:-49754940 Msa0074800:CDS
GGACTCAAATATGGTAACGT+GGG 0.688159 1_2:+49753010 None:intergenic
ATGATGGTGACCAACACCAG+AGG 0.696249 1_2:+49755018 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAAAATATTAATT+AGG - chr1_2:49753668-49753687 Msa0074800:intron 0.0%
!! AAGTTTACTAAAAAAATTTA+TGG - chr1_2:49751921-49751940 Msa0074800:intron 10.0%
!! AGTTTACTAAAAAAATTTAT+GGG - chr1_2:49751922-49751941 Msa0074800:intron 10.0%
!!! ATCCAATTTTTTTTTTTTTT+TGG - chr1_2:49752159-49752178 Msa0074800:CDS 10.0%
!!! TCCAATTTTTTTTTTTTTTT+GGG - chr1_2:49752160-49752179 Msa0074800:CDS 10.0%
!!! AATATGTTTTTTTGTAATTT+TGG - chr1_2:49752518-49752537 Msa0074800:CDS 10.0%
!! TTTATAAAATTAAAGATGTT+TGG + chr1_2:49752651-49752670 None:intergenic 10.0%
!! TATTCTTAAGAATATAAATT+TGG - chr1_2:49752719-49752738 Msa0074800:CDS 10.0%
!! TTTAATACATATACAAATAA+AGG - chr1_2:49752984-49753003 Msa0074800:CDS 10.0%
!!! TTTTTATTTTATTGAATGTA+TGG - chr1_2:49754928-49754947 Msa0074800:CDS 10.0%
!! AATAAAATTTCTCAAAGAAA+AGG - chr1_2:49751967-49751986 Msa0074800:intron 15.0%
!! ATAAAATTTCTCAAAGAAAA+GGG - chr1_2:49751968-49751987 Msa0074800:intron 15.0%
!! AAAAAAAAATTGGATATGTT+TGG + chr1_2:49752154-49752173 None:intergenic 15.0%
!! ACCCAAAAAAAAAAAAAAAT+TGG + chr1_2:49752164-49752183 None:intergenic 15.0%
!! TAAGTTAGTAGTATTAATTA+GGG + chr1_2:49752942-49752961 None:intergenic 15.0%
!! ATAAGTTAGTAGTATTAATT+AGG + chr1_2:49752943-49752962 None:intergenic 15.0%
!! AGTAAAAAATCAAATGTATT+TGG + chr1_2:49753194-49753213 None:intergenic 15.0%
!!! GTGATTTTGTTAAAATTGAT+TGG - chr1_2:49751824-49751843 Msa0074800:intron 20.0%
!! GTTAACATTATAATATTCCA+AGG + chr1_2:49752083-49752102 None:intergenic 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG + chr1_2:49752941-49752960 None:intergenic 20.0%
!! TATACAAATAAAGGACAATA+TGG - chr1_2:49752993-49753012 Msa0074800:CDS 20.0%
!! ACGTTAATTCTAAACAAATT+TGG - chr1_2:49753620-49753639 Msa0074800:intron 20.0%
!!! CAAAGAAAGTTTTAAAAACA+AGG + chr1_2:49754465-49754484 None:intergenic 20.0%
!! ATCAACTAATCTTTAATTGT+TGG - chr1_2:49754601-49754620 Msa0074800:intron 20.0%
!! GTCACAAAATAAATAATTGA+AGG + chr1_2:49754876-49754895 None:intergenic 20.0%
!! CAATAATTATTTGCTAACCA+CGG - chr1_2:49751513-49751532 Msa0074800:three_prime_UTR 25.0%
!!! GTTTTGAATGACAATGATTT+TGG - chr1_2:49751783-49751802 Msa0074800:CDS 25.0%
! AGTTATATTCATAGATTCCT+AGG - chr1_2:49751860-49751879 Msa0074800:intron 25.0%
! GTTTCTATCATTATATTCCT+AGG + chr1_2:49751880-49751899 None:intergenic 25.0%
! GAATTTATTCTCATCTTTGT+GGG + chr1_2:49752007-49752026 None:intergenic 25.0%
! TGAATTTATTCTCATCTTTG+TGG + chr1_2:49752008-49752027 None:intergenic 25.0%
! CCAAGGAAACATTAAAAATA+TGG + chr1_2:49752066-49752085 None:intergenic 25.0%
!!! CCATATTTTTAATGTTTCCT+TGG - chr1_2:49752063-49752082 Msa0074800:CDS 25.0%
! TTATAATGTTAACCAAACAC+AGG - chr1_2:49752090-49752109 Msa0074800:CDS 25.0%
! TATAATGTTAACCAAACACA+GGG - chr1_2:49752091-49752110 Msa0074800:CDS 25.0%
!!! CTACACTAGTTTAAAGTTTT+TGG + chr1_2:49752204-49752223 None:intergenic 25.0%
! ATAAATAAGTGAACAACATG+AGG + chr1_2:49752295-49752314 None:intergenic 25.0%
! AAATTAAAGATGTTTGGTCA+GGG + chr1_2:49752645-49752664 None:intergenic 25.0%
! AAAATTAAAGATGTTTGGTC+AGG + chr1_2:49752646-49752665 None:intergenic 25.0%
! CAAAAATAAAGTCAAATGAG+TGG + chr1_2:49752856-49752875 None:intergenic 25.0%
! TGCAAAAGGGTTTAAATATA+GGG + chr1_2:49752880-49752899 None:intergenic 25.0%
! TTGCAAAAGGGTTTAAATAT+AGG + chr1_2:49752881-49752900 None:intergenic 25.0%
!! GCATCTAATAATTTGCAAAA+GGG + chr1_2:49752893-49752912 None:intergenic 25.0%
!! TGCATCTAATAATTTGCAAA+AGG + chr1_2:49752894-49752913 None:intergenic 25.0%
!!! TATTAATTAGGGGTATCTTT+AGG + chr1_2:49752931-49752950 None:intergenic 25.0%
! AAGAACTGTGAAAAAAGTAA+AGG - chr1_2:49753066-49753085 Msa0074800:intron 25.0%
! AGAACTGTGAAAAAAGTAAA+GGG - chr1_2:49753067-49753086 Msa0074800:intron 25.0%
! TTCTGACATATGAAACATTA+TGG - chr1_2:49753351-49753370 Msa0074800:intron 25.0%
! TGAATTTACAAATTGAATGC+CGG + chr1_2:49753514-49753533 None:intergenic 25.0%
! TTAGGATTACAATTATATGC+AGG - chr1_2:49753686-49753705 Msa0074800:intron 25.0%
!! TCAGTATCGAAATATTCTTA+CGG - chr1_2:49753929-49753948 Msa0074800:intron 25.0%
! ATTAATCTTGAGATGAAAGA+AGG + chr1_2:49753973-49753992 None:intergenic 25.0%
! TTCTTTCATCTCAAGATTAA+TGG - chr1_2:49753972-49753991 Msa0074800:intron 25.0%
! AATAGAGAAAGAGTGAAATT+AGG + chr1_2:49754442-49754461 None:intergenic 25.0%
GAACTAACTAAAGATGAAGA+AGG + chr1_2:49751745-49751764 None:intergenic 30.0%
!!! CAATGATTTTGGCTAAAACA+CGG - chr1_2:49751794-49751813 Msa0074800:CDS 30.0%
ATAATGTTAACCAAACACAG+GGG - chr1_2:49752092-49752111 Msa0074800:CDS 30.0%
! AAAATTGGATATGTTTGGTG+TGG + chr1_2:49752149-49752168 None:intergenic 30.0%
GTAACAAGATGAGTGATTAA+TGG - chr1_2:49752416-49752435 Msa0074800:intron 30.0%
AATTAAAGATGTTTGGTCAG+GGG + chr1_2:49752644-49752663 None:intergenic 30.0%
ACATGATTCTGTCAAATTCA+TGG - chr1_2:49752773-49752792 Msa0074800:intron 30.0%
TGAGTGGTTAGATATATGAA+CGG + chr1_2:49752840-49752859 None:intergenic 30.0%
AGTAAAGGGAGGTTATATTA+AGG - chr1_2:49753081-49753100 Msa0074800:intron 30.0%
GTAAAGGGAGGTTATATTAA+GGG - chr1_2:49753082-49753101 Msa0074800:intron 30.0%
! TTTTCTTCACAAATTATCCC+TGG - chr1_2:49753221-49753240 Msa0074800:intron 30.0%
GGTTGAATAATGAATGTTGT+AGG - chr1_2:49753372-49753391 Msa0074800:intron 30.0%
GATTACAATTATATGCAGGT+GGG - chr1_2:49753690-49753709 Msa0074800:intron 30.0%
CAATACAAACAAAGATTGAG+TGG - chr1_2:49753750-49753769 Msa0074800:intron 30.0%
GAGGCAAATAGAATTGTTAA+AGG - chr1_2:49753789-49753808 Msa0074800:intron 30.0%
TAGAATTGTTAAAGGAGCTT+TGG - chr1_2:49753797-49753816 Msa0074800:intron 30.0%
GATATGTAATTGTAATGCAG+CGG - chr1_2:49754150-49754169 Msa0074800:intron 30.0%
CATGTTCATTTGATAAGCAT+TGG + chr1_2:49754375-49754394 None:intergenic 30.0%
TTATTTGTACCAATGACACT+TGG - chr1_2:49754503-49754522 Msa0074800:intron 30.0%
ATCGTTCAAGACATCTTTAA+TGG - chr1_2:49754779-49754798 Msa0074800:intron 30.0%
!!! TCTCGTGCTTTCTTTGTTTT+TGG - chr1_2:49751466-49751485 Msa0074800:three_prime_UTR 35.0%
!! TTTTGGCTATGCTTGTGTTT+TGG + chr1_2:49752187-49752206 None:intergenic 35.0%
ATAAGTGAACAACATGAGGT+AGG + chr1_2:49752291-49752310 None:intergenic 35.0%
ATAGATACTAAGTCCCACAT+CGG + chr1_2:49752351-49752370 None:intergenic 35.0%
TACAGAGCATATGCAGAATA+TGG - chr1_2:49752379-49752398 Msa0074800:intron 35.0%
TGGTTAGATATATGAACGGA+GGG + chr1_2:49752836-49752855 None:intergenic 35.0%
ACTGTGAAAAAAGTAAAGGG+AGG - chr1_2:49753070-49753089 Msa0074800:intron 35.0%
TTTCATAAGTGTAGCTGAGT+TGG + chr1_2:49753253-49753272 None:intergenic 35.0%
GTTCAGATAATCCAATATGC+TGG + chr1_2:49753398-49753417 None:intergenic 35.0%
GTCAATTGAGGACTCAAATA+TGG + chr1_2:49753429-49753448 None:intergenic 35.0%
TATTTGAGTCCTCAATTGAC+CGG - chr1_2:49753429-49753448 Msa0074800:intron 35.0%
ATTGGAATCCTTAATGACAC+CGG - chr1_2:49753492-49753511 Msa0074800:intron 35.0%
! CAACTACTAGTAGCATTGAA+GGG - chr1_2:49753586-49753605 Msa0074800:intron 35.0%
GGATTACAATTATATGCAGG+TGG - chr1_2:49753689-49753708 Msa0074800:intron 35.0%
AAAGATTGAGTGGAGAAGTA+GGG - chr1_2:49753760-49753779 Msa0074800:intron 35.0%
GCTTTGGTACTTATAACACT+TGG - chr1_2:49753813-49753832 Msa0074800:intron 35.0%
TTGGTACTTATAACACTTGG+TGG - chr1_2:49753816-49753835 Msa0074800:intron 35.0%
! CTCTGTTCGGTAAAAAGTAT+CGG + chr1_2:49754123-49754142 None:intergenic 35.0%
CATATCACTTAGACTCTGTT+CGG + chr1_2:49754136-49754155 None:intergenic 35.0%
ATCACCAATCCTCAAAACTT+CGG - chr1_2:49754401-49754420 Msa0074800:intron 35.0%
!! TTGATGATACCGAAGTTTTG+AGG + chr1_2:49754413-49754432 None:intergenic 35.0%
!!! AGCAGGTTTTGTTACATCAA+AGG - chr1_2:49754628-49754647 Msa0074800:intron 35.0%
ATTAGGGCATATGTTTGACA+AGG + chr1_2:49754702-49754721 None:intergenic 35.0%
GTCTTGAACGATAAATCTCA+AGG + chr1_2:49754771-49754790 None:intergenic 35.0%
TGGATTCAAGACACATATGA+TGG + chr1_2:49754964-49754983 None:intergenic 35.0%
!! ATCCATTTGACTTTTCTGTC+TGG - chr1_2:49754979-49754998 Msa0074800:CDS 35.0%
TACCAGACAGAAAAGTCAAA+TGG + chr1_2:49754984-49755003 None:intergenic 35.0%
! TTGACTTTTCTGTCTGGTAA+TGG - chr1_2:49754985-49755004 Msa0074800:CDS 35.0%
TGTCACAACCAAGCTTATGA+TGG + chr1_2:49751428-49751447 None:intergenic 40.0%
GCTACTTACCAATAAGGTCA+GGG + chr1_2:49751718-49751737 None:intergenic 40.0%
AGCTACTTACCAATAAGGTC+AGG + chr1_2:49751719-49751738 None:intergenic 40.0%
GGTGAAGCTACTTACCAATA+AGG + chr1_2:49751724-49751743 None:intergenic 40.0%
CTGGACTTATAATGTTGGTG+AGG + chr1_2:49752616-49752635 None:intergenic 40.0%
CTCACCAACATTATAAGTCC+AGG - chr1_2:49752614-49752633 Msa0074800:CDS 40.0%
GTGGTTAGATATATGAACGG+AGG + chr1_2:49752837-49752856 None:intergenic 40.0%
AGGGAGGTTATATTAAGGGA+CGG - chr1_2:49753086-49753105 Msa0074800:intron 40.0%
AGGTTATATTAAGGGACGGA+GGG - chr1_2:49753090-49753109 Msa0074800:intron 40.0%
AATGTTGTAGGCCAGCATAT+TGG - chr1_2:49753384-49753403 Msa0074800:intron 40.0%
! GGACTCAAATATGGTAACGT+GGG + chr1_2:49753420-49753439 None:intergenic 40.0%
! AGGACTCAAATATGGTAACG+TGG + chr1_2:49753421-49753440 None:intergenic 40.0%
ATTGACCGGACAAAGACTAT+TGG - chr1_2:49753443-49753462 Msa0074800:intron 40.0%
TCCAACCAATAGTCTTTGTC+CGG + chr1_2:49753451-49753470 None:intergenic 40.0%
AATCCCAGCTGAAGCAAAAT+TGG + chr1_2:49753475-49753494 None:intergenic 40.0%
! AATTTTGCTTCAGCTGGGAT+TGG - chr1_2:49753474-49753493 Msa0074800:intron 40.0%
!! ATTGAATGCCGGTGTCATTA+AGG + chr1_2:49753503-49753522 None:intergenic 40.0%
CAATGCTACTAGTAGTTGGT+TGG + chr1_2:49753584-49753603 None:intergenic 40.0%
CCTTCAATGCTACTAGTAGT+TGG + chr1_2:49753588-49753607 None:intergenic 40.0%
! CCAACTACTAGTAGCATTGA+AGG - chr1_2:49753585-49753604 Msa0074800:intron 40.0%
CAAAGATTGAGTGGAGAAGT+AGG - chr1_2:49753759-49753778 Msa0074800:intron 40.0%
AAGATTGAGTGGAGAAGTAG+GGG - chr1_2:49753761-49753780 Msa0074800:intron 40.0%
! TTCTCACTCCATTTTCAGCT+AGG - chr1_2:49753862-49753881 Msa0074800:intron 40.0%
ACAAGATAGGTGCAGTATTG+TGG + chr1_2:49753906-49753925 None:intergenic 40.0%
TCGATACTGAGAGACAAGAT+AGG + chr1_2:49753919-49753938 None:intergenic 40.0%
! CTTGCTACTAGGAGCATAAA+TGG - chr1_2:49754242-49754261 Msa0074800:intron 40.0%
! TGGTCATTTGAAGCAAAAGC+TGG + chr1_2:49754310-49754329 None:intergenic 40.0%
AAACACATCACATCCCAGTT+GGG + chr1_2:49754345-49754364 None:intergenic 40.0%
TAAACACATCACATCCCAGT+TGG + chr1_2:49754346-49754365 None:intergenic 40.0%
!!! GATACCGAAGTTTTGAGGAT+TGG + chr1_2:49754408-49754427 None:intergenic 40.0%
CTTTAATTGTTGGTGTGAGC+AGG - chr1_2:49754611-49754630 Msa0074800:intron 40.0%
!! ACATCAAAGGTAGCTTGTTG+TGG - chr1_2:49754641-49754660 Msa0074800:intron 40.0%
AGGCATAGAGATCACGATTA+GGG + chr1_2:49754718-49754737 None:intergenic 40.0%
AAGGCATAGAGATCACGATT+AGG + chr1_2:49754719-49754738 None:intergenic 40.0%
! ATCGTGATCTCTATGCCTTT+TGG - chr1_2:49754720-49754739 Msa0074800:intron 40.0%
! TCGTGATCTCTATGCCTTTT+GGG - chr1_2:49754721-49754740 Msa0074800:intron 40.0%
CACGTTCAGTTGGATGAAAA+GGG + chr1_2:49754748-49754767 None:intergenic 40.0%
CATAGGGCTCATAAAATCAG+AGG + chr1_2:49754807-49754826 None:intergenic 40.0%
GGACTCCAACGTCTAATAAA+AGG - chr1_2:49754850-49754869 Msa0074800:intron 40.0%
! GAAGGCCTTTTATTAGACGT+TGG + chr1_2:49754858-49754877 None:intergenic 40.0%
GTTGGTCACCATCATAAGCT+TGG - chr1_2:49751417-49751436 Msa0074800:three_prime_UTR 45.0%
GGATAATCGATGCCATAAGG+AGG + chr1_2:49751553-49751572 None:intergenic 45.0%
!! CCTTATGGCATCGATTATCC+CGG - chr1_2:49751553-49751572 Msa0074800:three_prime_UTR 45.0%
ACTTACCAATAAGGTCAGGG+AGG + chr1_2:49751715-49751734 None:intergenic 45.0%
ATGTTAACCAAACACAGGGG+CGG - chr1_2:49752095-49752114 Msa0074800:CDS 45.0%
GTGCTGCATCAAATGCATGT+GGG + chr1_2:49752252-49752271 None:intergenic 45.0%
TGTGCTGCATCAAATGCATG+TGG + chr1_2:49752253-49752272 None:intergenic 45.0%
CGGACCTGGACTTATAATGT+TGG + chr1_2:49752621-49752640 None:intergenic 45.0%
TAAAGATGTTTGGTCAGGGG+CGG + chr1_2:49752641-49752660 None:intergenic 45.0%
CTTGAAAACCCTGTAGTGTG+TGG - chr1_2:49752746-49752765 Msa0074800:intron 45.0%
ATGTTGTGCCACACACTACA+GGG + chr1_2:49752757-49752776 None:intergenic 45.0%
GAGGTTATATTAAGGGACGG+AGG - chr1_2:49753089-49753108 Msa0074800:intron 45.0%
AGTCTTTGTCCGGTCAATTG+AGG + chr1_2:49753441-49753460 None:intergenic 45.0%
ACCGGACAAAGACTATTGGT+TGG - chr1_2:49753447-49753466 Msa0074800:intron 45.0%
! GAGCCAATTTTGCTTCAGCT+GGG - chr1_2:49753469-49753488 Msa0074800:intron 45.0%
TGACGAGACCTAGCTGAAAA+TGG + chr1_2:49753873-49753892 None:intergenic 45.0%
AATGCAGCGGTTGTTTGACT+TGG - chr1_2:49754163-49754182 Msa0074800:intron 45.0%
! ATGCAGCGGTTGTTTGACTT+GGG - chr1_2:49754164-49754183 Msa0074800:intron 45.0%
!! TGTTTGACTTGGGAGCTAGA+AGG - chr1_2:49754174-49754193 Msa0074800:intron 45.0%
!! GTTTGACTTGGGAGCTAGAA+GGG - chr1_2:49754175-49754194 Msa0074800:intron 45.0%
TGAGCAGGAATACAACCCAA+TGG + chr1_2:49754221-49754240 None:intergenic 45.0%
!! TTCCTGCTCAACTTGCTACT+AGG - chr1_2:49754231-49754250 Msa0074800:intron 45.0%
AAAGACCTCAACTCCCAACT+GGG - chr1_2:49754329-49754348 Msa0074800:intron 45.0%
!! GTACCAATGACACTTGGTGT+CGG - chr1_2:49754509-49754528 Msa0074800:intron 45.0%
!! AAGGTAGCTTGTTGTGGTCA+AGG - chr1_2:49754647-49754666 Msa0074800:intron 45.0%
TGTGGTCAAGGACGTTTCAA+TGG - chr1_2:49754659-49754678 Msa0074800:intron 45.0%
TGGATGAAAAGGGTCCCAAA+AGG + chr1_2:49754738-49754757 None:intergenic 45.0%
GCACGTTCAGTTGGATGAAA+AGG + chr1_2:49754749-49754768 None:intergenic 45.0%
AATCTCAAGGCACGTTCAGT+TGG + chr1_2:49754758-49754777 None:intergenic 45.0%
! TGATGGTGCTGAGGTTCATA+GGG + chr1_2:49754823-49754842 None:intergenic 45.0%
! ATGATGGTGCTGAGGTTCAT+AGG + chr1_2:49754824-49754843 None:intergenic 45.0%
GTTGGAGTCCATAGCTATGA+TGG + chr1_2:49754840-49754859 None:intergenic 45.0%
!! TATAGTAAATAAATTTATAA+CGG + chr1_2:49754080-49754099 None:intergenic 5.0%
! ATTGGTTCTCACTCTCCCTC+TGG - chr1_2:49751393-49751412 Msa0074800:three_prime_UTR 50.0%
! TGATGGTGACCAACACCAGA+GGG + chr1_2:49751411-49751430 None:intergenic 50.0%
! ATGATGGTGACCAACACCAG+AGG + chr1_2:49751412-49751431 None:intergenic 50.0%
! GGTGACTCACTTGTTGACAG+TGG - chr1_2:49751487-49751506 Msa0074800:three_prime_UTR 50.0%
GATGCCATAAGGAGGAGAGT+CGG + chr1_2:49751545-49751564 None:intergenic 50.0%
CCGGGATAATCGATGCCATA+AGG + chr1_2:49751556-49751575 None:intergenic 50.0%
GTCAACCTCCCTGACCTTAT+TGG - chr1_2:49751707-49751726 Msa0074800:CDS 50.0%
AGCTTGCAATGTAGCCGATG+TGG - chr1_2:49752334-49752353 Msa0074800:intron 50.0%
GCTTGCAATGTAGCCGATGT+GGG - chr1_2:49752335-49752354 Msa0074800:intron 50.0%
CATGTTGTGCCACACACTAC+AGG + chr1_2:49752758-49752777 None:intergenic 50.0%
!! AGCTGAGTTGGTAGCTACCA+GGG + chr1_2:49753241-49753260 None:intergenic 50.0%
!! TAGCTGAGTTGGTAGCTACC+AGG + chr1_2:49753242-49753261 None:intergenic 50.0%
! GGAGCCAATTTTGCTTCAGC+TGG - chr1_2:49753468-49753487 Msa0074800:intron 50.0%
! TGTGACTGGAGTTGGTCCAT+TGG - chr1_2:49754202-49754221 Msa0074800:intron 50.0%
! GTGACTGGAGTTGGTCCATT+GGG - chr1_2:49754203-49754222 Msa0074800:intron 50.0%
! CTCCTAGTAGCAAGTTGAGC+AGG + chr1_2:49754236-49754255 None:intergenic 50.0%
CAGTTGGGAGTTGAGGTCTT+TGG + chr1_2:49754330-49754349 None:intergenic 50.0%
CAAAGACCTCAACTCCCAAC+TGG - chr1_2:49754328-49754347 Msa0074800:intron 50.0%
TAGCCGACACCAAGTGTCAT+TGG + chr1_2:49754515-49754534 None:intergenic 50.0%
TCAAGGACGTTTCAATGGCG+TGG - chr1_2:49754664-49754683 Msa0074800:intron 50.0%
CAAGGACGTTTCAATGGCGT+GGG - chr1_2:49754665-49754684 Msa0074800:intron 50.0%
! CCATAGCTATGATGGTGCTG+AGG + chr1_2:49754832-49754851 None:intergenic 50.0%
CCTCAGCACCATCATAGCTA+TGG - chr1_2:49754829-49754848 Msa0074800:intron 50.0%
TCTCACTCTCCCTCTGGTGT+TGG - chr1_2:49751399-49751418 Msa0074800:three_prime_UTR 55.0%
GTCAGGGAGGTTGACACCAT+TGG + chr1_2:49751702-49751721 None:intergenic 55.0%
GACCTGTTAAGGTCCTGGTG+TGG - chr1_2:49752117-49752136 Msa0074800:CDS 55.0%
TGCCACACCAGGACCTTAAC+AGG + chr1_2:49752122-49752141 None:intergenic 55.0%
!! GCTAGAAGGGTGCTTGTGAC+TGG - chr1_2:49754188-49754207 Msa0074800:intron 55.0%
! AGGGTGCTTGTGACTGGAGT+TGG - chr1_2:49754194-49754213 Msa0074800:intron 55.0%
CACATCCCAGTTGGGAGTTG+AGG + chr1_2:49754337-49754356 None:intergenic 55.0%
!! CGTGCCGACTCTCCTCCTTA+TGG - chr1_2:49751538-49751557 Msa0074800:three_prime_UTR 60.0%
AACAGGTCCGCCCCTGTGTT+TGG + chr1_2:49752105-49752124 None:intergenic 60.0%
ACACAGGGGCGGACCTGTTA+AGG - chr1_2:49752106-49752125 Msa0074800:CDS 60.0%
GAGTGGAGAAGTAGGGGCTG+AGG - chr1_2:49753767-49753786 Msa0074800:intron 60.0%
TGGAGAAGTAGGGGCTGAGG+AGG - chr1_2:49753770-49753789 Msa0074800:intron 60.0%
TATCCCGGTCGTCGTCCCAC+CGG - chr1_2:49751568-49751587 Msa0074800:exon 65.0%
GGGCGGACCTGTTAAGGTCC+TGG - chr1_2:49752112-49752131 Msa0074800:CDS 65.0%
GGTGTGGCACTTGCCACACC+AGG + chr1_2:49752133-49752152 None:intergenic 65.0%
TGTTTGGTCAGGGGCGGACC+TGG + chr1_2:49752635-49752654 None:intergenic 65.0%
AGGAGAGTCGGCACGAGCCG+TGG + chr1_2:49751533-49751552 None:intergenic 70.0%
! CGGCCGGTGGGACGACGACC+GGG + chr1_2:49751574-49751593 None:intergenic 80.0%
! GCGGCCGGTGGGACGACGAC+CGG + chr1_2:49751575-49751594 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 49751388 49755061 49751388 ID=Msa0074800;Name=Msa0074800
chr1_2 mRNA 49751388 49755061 49751388 ID=Msa0074800-mRNA-1;Parent=Msa0074800;Name=Msa0074800-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.75|0.8|1|1|1|5|196|353
chr1_2 exon 49751388 49751816 49751388 ID=Msa0074800-mRNA-1:exon:15201;Parent=Msa0074800-mRNA-1
chr1_2 exon 49752027 49752279 49752027 ID=Msa0074800-mRNA-1:exon:15200;Parent=Msa0074800-mRNA-1
chr1_2 exon 49752499 49752741 49752499 ID=Msa0074800-mRNA-1:exon:15199;Parent=Msa0074800-mRNA-1
chr1_2 exon 49752925 49753055 49752925 ID=Msa0074800-mRNA-1:exon:15198;Parent=Msa0074800-mRNA-1
chr1_2 exon 49754860 49755061 49754860 ID=Msa0074800-mRNA-1:exon:15197;Parent=Msa0074800-mRNA-1
chr1_2 CDS 49754860 49755061 49754860 ID=Msa0074800-mRNA-1:cds;Parent=Msa0074800-mRNA-1
chr1_2 CDS 49752925 49753055 49752925 ID=Msa0074800-mRNA-1:cds;Parent=Msa0074800-mRNA-1
chr1_2 CDS 49752499 49752741 49752499 ID=Msa0074800-mRNA-1:cds;Parent=Msa0074800-mRNA-1
chr1_2 CDS 49752027 49752279 49752027 ID=Msa0074800-mRNA-1:cds;Parent=Msa0074800-mRNA-1
chr1_2 CDS 49751584 49751816 49751584 ID=Msa0074800-mRNA-1:cds;Parent=Msa0074800-mRNA-1
chr1_2 three_prime_UTR 49751388 49751583 49751388 ID=Msa0074800-mRNA-1:three_prime_utr;Parent=Msa0074800-mRNA-1
Gene Sequence

>Msa0074800

ATGAGATTGGTTCTCACTCTCCCTCTGGTGTTGGTCACCATCATAAGCTTGGTTGTGACAATGAGAGTTCAAGCTGCATCTCGTGCTTTCTTTGTTTTTGGTGACTCACTTGTTGACAGTGGCAACAATAATTATTTGCTAACCACGGCTCGTGCCGACTCTCCTCCTTATGGCATCGATTATCCCGGTCGTCGTCCCACCGGCCAGCATATTGGATTATCTGAACCCACGTTACCATATTTGAGTCCTCAATTGACCGGACAAAGACTATTGGTTGGAGCCAATTTTGCTTCAGCTGGGATTGGAATCCTTAATGACACCGGCATTCAATTTGTGGGAATATTAAGAATGTTTCAACAGTTTTCGTTGTTTGAGCAATACAAACAAAGATTGAGTGGAGAAGTAGGGGCTGAGGAGGCAAATAGAATTGTTAAAGGAGCTTTGGTACTTATAACACTTGGTGGTAATGATTTTGTCAACAACTATTTTCTCACTCCATTTTCAGCTAGGTCTCGTCAATTCAACGTGCCACAATACTGCACCTATCTTGTCTCTCAGTATCGAAATATTCTTACGCGGTTGTTTGACTTGGGAGCTAGAAGGGTGCTTGTGACTGGAGTTGGTCCATTGGGTTGTATTCCTGCTCAACTTGCTACTAGGAGCATAAATGGAGAGTGTGTAAATGAGATACAACAAGCTGCTCAATTTTTCAACCAGCTTTTGCTTCAAATGACCAAAGACCTCAACTCCCAACTGGGATGTGATGTGTTTATTGTTGCCAATGCTTATCAAATGAACATGAATTTAATCACCAATCCTCAAAACTTCGGTTTTGTTACATCAAAGGTAGCTTGTTGTGGTCAAGGACGTTTCAATGGCGTGGGACTATGCACTGCCTTGTCAAACATATGCCCTAATCGTGATCTCTATGCCTTTTGGGACCCTTTTCATCCAACTGAACGTGCCTTGAGATTTATCGTTCAAGACATCTTTAATGGAACCTCTGATTTTATGAGCCCTATGAACCTCAGCACCATCATAGCTATGGACTCCAACGTCTAA
Protein sequence

>Msa0074800

MRLVLTLPLVLVTIISLVVTMRVQAASRAFFVFGDSLVDSGNNNYLLTTARADSPPYGIDYPGRRPTGQHIGLSEPTLPYLSPQLTGQRLLVGANFASAGIGILNDTGIQFVGILRMFQQFSLFEQYKQRLSGEVGAEEANRIVKGALVLITLGGNDFVNNYFLTPFSARSRQFNVPQYCTYLVSQYRNILTRLFDLGARRVLVTGVGPLGCIPAQLATRSINGECVNEIQQAAQFFNQLLLQMTKDLNSQLGCDVFIVANAYQMNMNLITNPQNFGFVTSKVACCGQGRFNGVGLCTALSNICPNRDLYAFWDPFHPTERALRFIVQDIFNGTSDFMSPMNLSTIIAMDSNV*