AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170530 MtrunA17_Chr1g0188091 94.805 385 19 1 1 385 1 384 0.0 739
Msa0170530 MtrunA17_Chr1g0166241 56.883 385 128 11 1 382 1 350 9.32e-130 376
Msa0170530 MtrunA17_Chr1g0184881 50.646 387 137 14 4 383 5 344 9.31e-103 307
Msa0170530 MtrunA17_Chr7g0260551 49.482 386 147 15 4 382 5 349 3.67e-99 298
Msa0170530 MtrunA17_Chr7g0251511 45.578 147 74 2 174 315 129 274 1.18e-36 135
Msa0170530 MtrunA17_Chr4g0075591 42.975 121 69 0 176 296 118 238 1.38e-33 126
Msa0170530 MtrunA17_Chr4g0075611 42.063 126 73 0 171 296 131 256 1.59e-33 127
Msa0170530 MtrunA17_Chr8g0384101 39.024 164 85 4 160 310 60 221 2.50e-32 122
Msa0170530 MtrunA17_Chr2g0289701 46.018 113 61 0 184 296 142 254 3.78e-31 120
Msa0170530 MtrunA17_Chr2g0282301 39.716 141 77 4 173 307 140 278 4.64e-29 115
Msa0170530 MtrunA17_Chr4g0040171 37.324 142 80 3 180 314 123 262 4.09e-28 111
Msa0170530 MtrunA17_Chr4g0047231 36.220 127 75 2 174 294 147 273 9.69e-26 105
Msa0170530 MtrunA17_Chr7g0234691 32.489 237 124 9 79 303 92 304 1.31e-25 105
Msa0170530 MtrunA17_Chr4g0047221 37.190 121 70 2 180 294 206 326 1.56e-25 106
Msa0170530 MtrunA17_Chr8g0339051 28.205 234 146 5 77 303 47 265 9.05e-25 102
Msa0170530 MtrunA17_Chr5g0396281 35.252 139 79 2 176 308 97 230 2.15e-24 100
Msa0170530 MtrunA17_Chr2g0282311 30.719 153 99 3 173 319 140 291 4.84e-23 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170530 AT3G22970.1 60.534 337 118 8 4 337 5 329 8.62e-118 347
Msa0170530 AT4G14620.1 51.804 388 125 14 4 383 2 335 1.22e-105 315
Msa0170530 AT2G38820.2 50.333 300 117 11 4 296 5 279 1.78e-86 265
Msa0170530 AT3G22970.2 62.437 197 73 1 141 337 23 218 5.63e-74 231
Msa0170530 AT3G54550.1 42.568 296 131 9 5 295 6 267 8.69e-63 203
Msa0170530 AT2G38820.1 44.076 211 86 11 4 207 5 190 2.58e-35 129
Msa0170530 AT2G39650.2 41.045 134 73 1 176 303 48 181 9.00e-32 120
Msa0170530 AT2G39650.1 41.045 134 73 1 176 303 110 243 2.16e-31 121
Msa0170530 AT3G07350.1 40.580 138 75 2 177 308 137 273 2.24e-31 121
Msa0170530 AT4G32480.1 39.355 155 82 4 176 324 116 264 1.56e-30 118
Msa0170530 AT1G77160.1 33.149 181 100 3 141 300 42 222 1.85e-30 117
Msa0170530 AT1G77145.1 39.189 148 72 2 173 302 72 219 1.01e-29 115
Msa0170530 AT1G77160.2 39.041 146 71 2 173 300 22 167 1.09e-29 114
Msa0170530 AT3G25240.1 40.940 149 78 3 155 294 93 240 7.45e-29 114
Msa0170530 AT2G20670.1 39.394 132 72 3 176 300 117 247 5.48e-27 109
Msa0170530 AT1G12030.1 34.177 158 97 4 139 295 79 230 8.42e-25 103
Msa0170530 AT1G62420.1 38.596 114 67 1 184 294 116 229 1.62e-24 102
Msa0170530 AT1G77145.2 44.231 104 48 1 209 302 59 162 1.97e-23 97.1

Find 104 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTATTAGCGTTCTGGATT+AGG 0.250555 1_4:+54630287 None:intergenic
GGCGAGACGTGCATTGTTAA+TGG 0.255163 1_4:+54630151 None:intergenic
ACGGGATGTAATAATGAAAA+TGG 0.290817 1_4:-54628471 Msa0170530:three_prime_UTR
CGGTGAGAAAATATCTTTGC+AGG 0.298776 1_4:-54628818 Msa0170530:CDS
TATCTTCTCTATTAGCGTTC+TGG 0.320600 1_4:+54630281 None:intergenic
AATAGATGCAACTGCTTTAA+CGG 0.345730 1_4:-54629705 Msa0170530:CDS
GTGGTAATGACTACTGTTTA+TGG 0.349845 1_4:+54628492 None:intergenic
CTTCGATTTGCAAATCGAAA+TGG 0.365715 1_4:-54629345 Msa0170530:CDS
GACTTCCTCCACGGCGGGAC+AGG 0.368324 1_4:+54628985 None:intergenic
GTGGAGGAAGTCAGAGTATA+TGG 0.390934 1_4:-54628974 Msa0170530:CDS
GAAAATATCTTTGCAGGAAT+CGG 0.392848 1_4:-54628812 Msa0170530:CDS
ACACTCTTTACTTTCACTTC+CGG 0.395441 1_4:+54628730 None:intergenic
TTTGAGATTGCTCGATCGAC+GGG 0.423911 1_4:-54629129 Msa0170530:CDS
CGCCGGAATGTTCATTTCAC+CGG 0.425304 1_4:+54630190 None:intergenic
TTTCCTTCTTCTATGGTTTG+AGG 0.431240 1_4:+54628674 None:intergenic
TGTATTTCCTTTGAAACAAA+GGG 0.434432 1_4:-54628531 Msa0170530:three_prime_UTR
GAACACGTGGCGGCGATGAT+TGG 0.434740 1_4:+54630130 None:intergenic
GCCGGCGAAGTTCCACTTCC+CGG 0.448391 1_4:-54629840 Msa0170530:CDS
GACGAAGAACTTGATTTCTT+CGG 0.451688 1_4:-54629663 Msa0170530:CDS
GCAGAAAATCTTCAATCTCT+AGG 0.452854 1_4:-54629376 Msa0170530:CDS
TTTGCTAAGGCAACGGAGCT+AGG 0.455852 1_4:+54629792 None:intergenic
GGTTCATCGGACTTGTCGCC+GGG 0.456543 1_4:+54629822 None:intergenic
ACAGAGTCCCTTTGTTTCAA+AGG 0.458771 1_4:+54628524 None:intergenic
CAATAGAACAAACACATTGC+CGG 0.458931 1_4:-54630228 Msa0170530:five_prime_UTR
GAGTCTGTCACGAAGGTTGT+CGG 0.460032 1_4:+54628901 None:intergenic
TTCGGCGAATCTATCGCTAC+TGG 0.460109 1_4:-54629645 Msa0170530:CDS
TCGGACTTGTCGCCGGGAAG+TGG 0.462109 1_4:+54629828 None:intergenic
AAAGGAGCGACAGTGGTGAC+TGG 0.464611 1_4:-54628703 Msa0170530:CDS
GTTGCCGACGTGGCAATTAC+CGG 0.465887 1_4:-54628749 Msa0170530:CDS
AGGTTTCTCTGAGAAGTTAG+TGG 0.470712 1_4:+54629869 None:intergenic
TGAATATATCGATGTGTTTG+TGG 0.473335 1_4:-54629193 Msa0170530:CDS
AAAGTAAAGAGTGTTGAGAA+AGG 0.492470 1_4:-54628721 Msa0170530:CDS
GTTTGAGATTGCTCGATCGA+CGG 0.495268 1_4:-54629130 Msa0170530:CDS
TCGATCGACGGGAACGTTCA+AGG 0.497302 1_4:-54629118 Msa0170530:CDS
AAAGCATAATCAAAATCAAA+AGG 0.501310 1_4:-54628617 Msa0170530:three_prime_UTR
CGCCGGTGAAATGAACATTC+CGG 0.504576 1_4:-54630192 Msa0170530:five_prime_UTR
TTGTATTTCCTTTGAAACAA+AGG 0.510341 1_4:-54628532 Msa0170530:three_prime_UTR
AAGCAGAGTTTGAAGAAGAA+AGG 0.517627 1_4:-54629012 Msa0170530:CDS
CTGAATCGATGTCGATCGGT+TGG 0.517827 1_4:+54630000 None:intergenic
GCAACGGAGCTAGGCTCAAA+CGG 0.518520 1_4:+54629801 None:intergenic
CGGTTCATCGGACTTGTCGC+CGG 0.521847 1_4:+54629821 None:intergenic
TAGCCTCAAACCATAGAAGA+AGG 0.535681 1_4:-54628677 Msa0170530:exon
GATTTCCCGACGAAAATGTA+AGG 0.537019 1_4:+54629078 None:intergenic
GTCACGAAGGTTGTCGGTGA+CGG 0.537918 1_4:+54628907 None:intergenic
GCCGGGAAGTGGAACTTCGC+CGG 0.539650 1_4:+54629839 None:intergenic
CGACGGTGGTGTTGCCGACG+TGG 0.539789 1_4:-54628759 Msa0170530:CDS
CAGGAATCGGAAACTGTCTC+CGG 0.542143 1_4:-54628799 Msa0170530:CDS
AAAGACTCTTCGTGTTCGAC+CGG 0.544489 1_4:-54629917 Msa0170530:CDS
GGAACTTCGCCGGCGACGAT+AGG 0.549626 1_4:+54629849 None:intergenic
CGATGGCGGTGACGCACTCA+AGG 0.551605 1_4:-54629613 Msa0170530:intron
GCTAGGCTCAAACGGTTCAT+CGG 0.551711 1_4:+54629809 None:intergenic
CCGGCGAGTTTCACTATCGC+CGG 0.560249 1_4:+54630209 None:intergenic
TTGACGCGTTTGAAAACTGC+CGG 0.562462 1_4:+54629898 None:intergenic
TGTTGAGAAAGGAGCGACAG+TGG 0.564434 1_4:-54628710 Msa0170530:CDS
AATACCTTGTGCGAGTGTTG+CGG 0.566333 1_4:-54629485 Msa0170530:CDS
TTCAGACGAGATTTCAACAC+AGG 0.566428 1_4:+54629939 None:intergenic
TCAGATCGTCACCGTCGTAT+CGG 0.567992 1_4:-54629043 Msa0170530:CDS
CGTCACCGTCGTATCGGAGG+CGG 0.569275 1_4:-54629037 Msa0170530:CDS
AGACGGATTCACTCTGCTGC+AGG 0.574879 1_4:+54628930 None:intergenic
ATCACTCTCCGACGCAACGC+CGG 0.579926 1_4:+54628864 None:intergenic
GACTCGAAGGAGGATCTGAC+CGG 0.581417 1_4:-54628883 Msa0170530:CDS
TTCTCTGAATCGATGTCGAT+CGG 0.583729 1_4:+54629996 None:intergenic
GGTGAGTGGGAACTGATCTT+CGG 0.586732 1_4:-54628838 Msa0170530:CDS
CGGAGAGTGATTGTGGTGAG+TGG 0.590871 1_4:-54628852 Msa0170530:CDS
GAATGCCTGTCCCGCCGTGG+AGG 0.591996 1_4:-54628990 Msa0170530:CDS
AAAACAAAATCTCATCCAGC+TGG 0.593313 1_4:-54629319 Msa0170530:intron
GGATCTGACCGGCGTTGCGT+CGG 0.593452 1_4:-54628872 Msa0170530:CDS
AACCTTCGTGACAGACTCGA+AGG 0.593595 1_4:-54628896 Msa0170530:CDS
AAGGTTGTCGGTGACGGAGA+CGG 0.594096 1_4:+54628913 None:intergenic
TGCACTACAGTATTATCTCG+TGG 0.598652 1_4:+54630108 None:intergenic
ACTCTGACTTCCTCCACGGC+GGG 0.602994 1_4:+54628980 None:intergenic
ATGTGTTTGTGGAAGGTGAG+AGG 0.604456 1_4:-54629182 Msa0170530:CDS
CGGATTCACTCTGCTGCAGG+AGG 0.617962 1_4:+54628933 None:intergenic
GTATTATCTCGTGGAACACG+TGG 0.621242 1_4:+54630117 None:intergenic
GCTACTGGTTCTTTCAACGA+TGG 0.622237 1_4:-54629630 Msa0170530:CDS
CAGAGTATATGGTAGCTAAG+TGG 0.623568 1_4:-54628963 Msa0170530:CDS
CTCCTTCGAGTCTGTCACGA+AGG 0.623645 1_4:+54628894 None:intergenic
GTTGCGTCGGAGAGTGATTG+TGG 0.627922 1_4:-54628859 Msa0170530:CDS
AAGGAATGCCTGTCCCGCCG+TGG 0.630360 1_4:-54628993 Msa0170530:CDS
CTCTCCGCAACACTCGCACA+AGG 0.630481 1_4:+54629481 None:intergenic
GGAGAGTGATTGTGGTGAGT+GGG 0.630723 1_4:-54628851 Msa0170530:CDS
GAAGAAATCAAGTTCTTCGT+CGG 0.632676 1_4:+54629665 None:intergenic
TCAGAGAAACCTATCGTCGC+CGG 0.637917 1_4:-54629858 Msa0170530:CDS
GATCGTCACCGTCGTATCGG+AGG 0.639360 1_4:-54629040 Msa0170530:CDS
CTTCGCCGCCTCCGATACGA+CGG 0.640176 1_4:+54629032 None:intergenic
ACTGGTTCTTTCAACGATGG+CGG 0.641644 1_4:-54629627 Msa0170530:CDS
ATATACTCTGACTTCCTCCA+CGG 0.643784 1_4:+54628976 None:intergenic
ATACGACGGTGACGATCTGA+CGG 0.644479 1_4:+54629046 None:intergenic
CCGGCGATAGTGAAACTCGC+CGG 0.645620 1_4:-54630209 Msa0170530:five_prime_UTR
CGATTCAGAGAAGTTAGCCG+TGG 0.646198 1_4:-54629985 Msa0170530:CDS
TATATCGATGTGTTTGTGGA+AGG 0.646530 1_4:-54629189 Msa0170530:CDS
TAAACAGTAGTCATTACCAC+GGG 0.649655 1_4:-54628489 Msa0170530:three_prime_UTR
TCGATCGGTTGGATCTTCAT+CGG 0.650602 1_4:+54630011 None:intergenic
CACGTCGGCAACACCACCGT+CGG 0.653432 1_4:+54628760 None:intergenic
GAATCGGAAACTGTCTCCGG+TGG 0.655145 1_4:-54628796 Msa0170530:CDS
ACTTCCGGTAATTGCCACGT+CGG 0.655991 1_4:+54628745 None:intergenic
TACTCTGACTTCCTCCACGG+CGG 0.656636 1_4:+54628979 None:intergenic
TGGTGAGAAAATCTCACCGA+CGG 0.675741 1_4:-54628776 Msa0170530:CDS
ATAAACAGTAGTCATTACCA+CGG 0.694310 1_4:-54628490 Msa0170530:three_prime_UTR
AAAACAAAGAGAAATCCGAA+AGG 0.696222 1_4:+54628561 None:intergenic
TTATCTCGTGGAACACGTGG+CGG 0.703524 1_4:+54630120 None:intergenic
CTTCGTGACAGACTCGAAGG+AGG 0.707524 1_4:-54628893 Msa0170530:CDS
TGAGAAAATCTCACCGACGG+TGG 0.711396 1_4:-54628773 Msa0170530:CDS
GACGTCGTTTCGAACAACCA+CGG 0.725989 1_4:+54629968 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTTTATTTAAATTTT+TGG - chr1_4:54629372-54629391 Msa0170530:CDS 0.0%
!!! AAATTTTTTATTTAAATTTT+TGG - chr1_4:54629372-54629391 Msa0170530:CDS 0.0%
!! AAAAAATTTCAAAAAAATTG+GGG + chr1_4:54629361-54629380 None:intergenic 10.0%
!! AAAAAATTTCAAAAAAATTG+GGG + chr1_4:54629361-54629380 None:intergenic 10.0%
!!! TTAGTTTAATTTTTACCTTT+CGG - chr1_4:54630069-54630088 Msa0170530:five_prime_UTR 15.0%
!!! TTAGTTTAATTTTTACCTTT+CGG - chr1_4:54630069-54630088 Msa0170530:five_prime_UTR 15.0%
!! TATTAAACTCTGCATAAAAA+AGG + chr1_4:54629144-54629163 None:intergenic 20.0%
!!! AAAAACAGTAAAGTTTTCAA+AGG - chr1_4:54629221-54629240 Msa0170530:intron 20.0%
!! AAAGCATAATCAAAATCAAA+AGG - chr1_4:54630028-54630047 Msa0170530:exon 20.0%
!! TATTAAACTCTGCATAAAAA+AGG + chr1_4:54629144-54629163 None:intergenic 20.0%
!!! AAAAACAGTAAAGTTTTCAA+AGG - chr1_4:54629221-54629240 Msa0170530:intron 20.0%
!! AAAGCATAATCAAAATCAAA+AGG - chr1_4:54630028-54630047 Msa0170530:exon 20.0%
!!! TGTAGTTTTACGAAGATTTT+CGG - chr1_4:54628561-54628580 Msa0170530:three_prime_UTR 25.0%
!!! ACTGTTTTTGTCAACTATTT+TGG + chr1_4:54629210-54629229 None:intergenic 25.0%
! AAAACCACAACATTCAAATT+AGG + chr1_4:54629412-54629431 None:intergenic 25.0%
!!! CATTGATATTGATTTTCGTT+CGG - chr1_4:54629491-54629510 Msa0170530:CDS 25.0%
!!! TTGTATTTCCTTTGAAACAA+AGG - chr1_4:54630113-54630132 Msa0170530:five_prime_UTR 25.0%
!!! TGTATTTCCTTTGAAACAAA+GGG - chr1_4:54630114-54630133 Msa0170530:five_prime_UTR 25.0%
!!! TGTAGTTTTACGAAGATTTT+CGG - chr1_4:54628561-54628580 Msa0170530:three_prime_UTR 25.0%
!!! ACTGTTTTTGTCAACTATTT+TGG + chr1_4:54629210-54629229 None:intergenic 25.0%
! AAAACCACAACATTCAAATT+AGG + chr1_4:54629412-54629431 None:intergenic 25.0%
!!! CATTGATATTGATTTTCGTT+CGG - chr1_4:54629491-54629510 Msa0170530:CDS 25.0%
!!! TTGTATTTCCTTTGAAACAA+AGG - chr1_4:54630113-54630132 Msa0170530:five_prime_UTR 25.0%
!!! TGTATTTCCTTTGAAACAAA+GGG - chr1_4:54630114-54630133 Msa0170530:five_prime_UTR 25.0%
AATAGATGCAACTGCTTTAA+CGG - chr1_4:54628940-54628959 Msa0170530:CDS 30.0%
AACACCTAATTTGAATGTTG+TGG - chr1_4:54629405-54629424 Msa0170530:CDS 30.0%
!!! TGTGGTTTTGATTTTGATTC+AGG - chr1_4:54629423-54629442 Msa0170530:CDS 30.0%
TGAATATATCGATGTGTTTG+TGG - chr1_4:54629452-54629471 Msa0170530:CDS 30.0%
! TTTCTTCCTTACATTTTCGT+CGG - chr1_4:54629561-54629580 Msa0170530:intron 30.0%
GAAAATATCTTTGCAGGAAT+CGG - chr1_4:54629833-54629852 Msa0170530:CDS 30.0%
!! AAAGTAAAGAGTGTTGAGAA+AGG - chr1_4:54629924-54629943 Msa0170530:CDS 30.0%
! GCAAAATTTTCCTTCTTCTA+TGG + chr1_4:54629981-54630000 None:intergenic 30.0%
AAAACAAAGAGAAATCCGAA+AGG + chr1_4:54630087-54630106 None:intergenic 30.0%
!!! TTCGGATTTCTCTTTGTTTT+CGG - chr1_4:54630087-54630106 Msa0170530:five_prime_UTR 30.0%
ATAAACAGTAGTCATTACCA+CGG - chr1_4:54630155-54630174 Msa0170530:five_prime_UTR 30.0%
! ATTTTCATTATTACATCCCG+TGG + chr1_4:54630175-54630194 None:intergenic 30.0%
ACGGGATGTAATAATGAAAA+TGG - chr1_4:54630174-54630193 Msa0170530:five_prime_UTR 30.0%
AATAGATGCAACTGCTTTAA+CGG - chr1_4:54628940-54628959 Msa0170530:CDS 30.0%
AACACCTAATTTGAATGTTG+TGG - chr1_4:54629405-54629424 Msa0170530:CDS 30.0%
!!! TGTGGTTTTGATTTTGATTC+AGG - chr1_4:54629423-54629442 Msa0170530:CDS 30.0%
TGAATATATCGATGTGTTTG+TGG - chr1_4:54629452-54629471 Msa0170530:CDS 30.0%
! TTTCTTCCTTACATTTTCGT+CGG - chr1_4:54629561-54629580 Msa0170530:intron 30.0%
GAAAATATCTTTGCAGGAAT+CGG - chr1_4:54629833-54629852 Msa0170530:CDS 30.0%
!! AAAGTAAAGAGTGTTGAGAA+AGG - chr1_4:54629924-54629943 Msa0170530:CDS 30.0%
! GCAAAATTTTCCTTCTTCTA+TGG + chr1_4:54629981-54630000 None:intergenic 30.0%
AAAACAAAGAGAAATCCGAA+AGG + chr1_4:54630087-54630106 None:intergenic 30.0%
!!! TTCGGATTTCTCTTTGTTTT+CGG - chr1_4:54630087-54630106 Msa0170530:five_prime_UTR 30.0%
ATAAACAGTAGTCATTACCA+CGG - chr1_4:54630155-54630174 Msa0170530:five_prime_UTR 30.0%
! ATTTTCATTATTACATCCCG+TGG + chr1_4:54630175-54630194 None:intergenic 30.0%
ACGGGATGTAATAATGAAAA+TGG - chr1_4:54630174-54630193 Msa0170530:five_prime_UTR 30.0%
TATCTTCTCTATTAGCGTTC+TGG + chr1_4:54628367-54628386 None:intergenic 35.0%
CAATAGAACAAACACATTGC+CGG - chr1_4:54628417-54628436 Msa0170530:three_prime_UTR 35.0%
GAAGAAATCAAGTTCTTCGT+CGG + chr1_4:54628983-54629002 None:intergenic 35.0%
GACGAAGAACTTGATTTCTT+CGG - chr1_4:54628982-54629001 Msa0170530:CDS 35.0%
GCAGAAAATCTTCAATCTCT+AGG - chr1_4:54629269-54629288 Msa0170530:intron 35.0%
! CTTCGATTTGCAAATCGAAA+TGG - chr1_4:54629300-54629319 Msa0170530:intron 35.0%
AAAACAAAATCTCATCCAGC+TGG - chr1_4:54629326-54629345 Msa0170530:CDS 35.0%
TATATCGATGTGTTTGTGGA+AGG - chr1_4:54629456-54629475 Msa0170530:CDS 35.0%
! TTCTTCCTTACATTTTCGTC+GGG - chr1_4:54629562-54629581 Msa0170530:intron 35.0%
! TTACATTTTCGTCGGGAAAT+CGG - chr1_4:54629569-54629588 Msa0170530:intron 35.0%
AAGCAGAGTTTGAAGAAGAA+AGG - chr1_4:54629633-54629652 Msa0170530:CDS 35.0%
ACACTCTTTACTTTCACTTC+CGG + chr1_4:54629918-54629937 None:intergenic 35.0%
TTTCCTTCTTCTATGGTTTG+AGG + chr1_4:54629974-54629993 None:intergenic 35.0%
! GTGGTAATGACTACTGTTTA+TGG + chr1_4:54630156-54630175 None:intergenic 35.0%
TAAACAGTAGTCATTACCAC+GGG - chr1_4:54630156-54630175 Msa0170530:five_prime_UTR 35.0%
TATCTTCTCTATTAGCGTTC+TGG + chr1_4:54628367-54628386 None:intergenic 35.0%
CAATAGAACAAACACATTGC+CGG - chr1_4:54628417-54628436 Msa0170530:three_prime_UTR 35.0%
GAAGAAATCAAGTTCTTCGT+CGG + chr1_4:54628983-54629002 None:intergenic 35.0%
GACGAAGAACTTGATTTCTT+CGG - chr1_4:54628982-54629001 Msa0170530:CDS 35.0%
GCAGAAAATCTTCAATCTCT+AGG - chr1_4:54629269-54629288 Msa0170530:intron 35.0%
! CTTCGATTTGCAAATCGAAA+TGG - chr1_4:54629300-54629319 Msa0170530:intron 35.0%
AAAACAAAATCTCATCCAGC+TGG - chr1_4:54629326-54629345 Msa0170530:CDS 35.0%
TATATCGATGTGTTTGTGGA+AGG - chr1_4:54629456-54629475 Msa0170530:CDS 35.0%
! TTCTTCCTTACATTTTCGTC+GGG - chr1_4:54629562-54629581 Msa0170530:intron 35.0%
! TTACATTTTCGTCGGGAAAT+CGG - chr1_4:54629569-54629588 Msa0170530:intron 35.0%
AAGCAGAGTTTGAAGAAGAA+AGG - chr1_4:54629633-54629652 Msa0170530:CDS 35.0%
ACACTCTTTACTTTCACTTC+CGG + chr1_4:54629918-54629937 None:intergenic 35.0%
TTTCCTTCTTCTATGGTTTG+AGG + chr1_4:54629974-54629993 None:intergenic 35.0%
! GTGGTAATGACTACTGTTTA+TGG + chr1_4:54630156-54630175 None:intergenic 35.0%
TAAACAGTAGTCATTACCAC+GGG - chr1_4:54630156-54630175 Msa0170530:five_prime_UTR 35.0%
GAAAAAGAAGAAACGTTCGC+CGG + chr1_4:54628475-54628494 None:intergenic 40.0%
TGCACTACAGTATTATCTCG+TGG + chr1_4:54628540-54628559 None:intergenic 40.0%
TTCTCTGAATCGATGTCGAT+CGG + chr1_4:54628652-54628671 None:intergenic 40.0%
TTCAGACGAGATTTCAACAC+AGG + chr1_4:54628709-54628728 None:intergenic 40.0%
! AGGTTTCTCTGAGAAGTTAG+TGG + chr1_4:54628779-54628798 None:intergenic 40.0%
!! CACCATTTTTGCTAAGGCAA+CGG + chr1_4:54628863-54628882 None:intergenic 40.0%
!! ACTCTGCACCATTTTTGCTA+AGG + chr1_4:54628869-54628888 None:intergenic 40.0%
GATTTCCCGACGAAAATGTA+AGG + chr1_4:54629570-54629589 None:intergenic 40.0%
ATATACTCTGACTTCCTCCA+CGG + chr1_4:54629672-54629691 None:intergenic 40.0%
CAGAGTATATGGTAGCTAAG+TGG - chr1_4:54629682-54629701 Msa0170530:CDS 40.0%
CGGTGAGAAAATATCTTTGC+AGG - chr1_4:54629827-54629846 Msa0170530:CDS 40.0%
TAGCCTCAAACCATAGAAGA+AGG - chr1_4:54629968-54629987 Msa0170530:CDS 40.0%
! ACAGAGTCCCTTTGTTTCAA+AGG + chr1_4:54630124-54630143 None:intergenic 40.0%
! CAAGCACGCATTTTTAACAG+TGG + chr1_4:54630223-54630242 None:intergenic 40.0%
GAAAAAGAAGAAACGTTCGC+CGG + chr1_4:54628475-54628494 None:intergenic 40.0%
TGCACTACAGTATTATCTCG+TGG + chr1_4:54628540-54628559 None:intergenic 40.0%
TTCTCTGAATCGATGTCGAT+CGG + chr1_4:54628652-54628671 None:intergenic 40.0%
TTCAGACGAGATTTCAACAC+AGG + chr1_4:54628709-54628728 None:intergenic 40.0%
! AGGTTTCTCTGAGAAGTTAG+TGG + chr1_4:54628779-54628798 None:intergenic 40.0%
!! CACCATTTTTGCTAAGGCAA+CGG + chr1_4:54628863-54628882 None:intergenic 40.0%
!! ACTCTGCACCATTTTTGCTA+AGG + chr1_4:54628869-54628888 None:intergenic 40.0%
GATTTCCCGACGAAAATGTA+AGG + chr1_4:54629570-54629589 None:intergenic 40.0%
ATATACTCTGACTTCCTCCA+CGG + chr1_4:54629672-54629691 None:intergenic 40.0%
CAGAGTATATGGTAGCTAAG+TGG - chr1_4:54629682-54629701 Msa0170530:CDS 40.0%
CGGTGAGAAAATATCTTTGC+AGG - chr1_4:54629827-54629846 Msa0170530:CDS 40.0%
TAGCCTCAAACCATAGAAGA+AGG - chr1_4:54629968-54629987 Msa0170530:CDS 40.0%
! ACAGAGTCCCTTTGTTTCAA+AGG + chr1_4:54630124-54630143 None:intergenic 40.0%
! CAAGCACGCATTTTTAACAG+TGG + chr1_4:54630223-54630242 None:intergenic 40.0%
GTATTATCTCGTGGAACACG+TGG + chr1_4:54628531-54628550 None:intergenic 45.0%
TCGATCGGTTGGATCTTCAT+CGG + chr1_4:54628637-54628656 None:intergenic 45.0%
AAAGACTCTTCGTGTTCGAC+CGG - chr1_4:54628728-54628747 Msa0170530:CDS 45.0%
TTGACGCGTTTGAAAACTGC+CGG + chr1_4:54628750-54628769 None:intergenic 45.0%
CTCCGTTGCCTTAGCAAAAA+TGG - chr1_4:54628858-54628877 Msa0170530:CDS 45.0%
!!! TTGCGAGTGAGTTTTGAGAC+TGG + chr1_4:54628922-54628941 None:intergenic 45.0%
!! GCTACTGGTTCTTTCAACGA+TGG - chr1_4:54629015-54629034 Msa0170530:CDS 45.0%
! ACTGGTTCTTTCAACGATGG+CGG - chr1_4:54629018-54629037 Msa0170530:CDS 45.0%
! AATACCTTGTGCGAGTGTTG+CGG - chr1_4:54629160-54629179 Msa0170530:CDS 45.0%
TTGGGGAAAAATGTACCAGC+TGG + chr1_4:54629344-54629363 None:intergenic 45.0%
ATGTGTTTGTGGAAGGTGAG+AGG - chr1_4:54629463-54629482 Msa0170530:CDS 45.0%
! GTTTGAGATTGCTCGATCGA+CGG - chr1_4:54629515-54629534 Msa0170530:intron 45.0%
! TTTGAGATTGCTCGATCGAC+GGG - chr1_4:54629516-54629535 Msa0170530:intron 45.0%
GTGGAGGAAGTCAGAGTATA+TGG - chr1_4:54629671-54629690 Msa0170530:CDS 45.0%
TGGTGAGAAAATCTCACCGA+CGG - chr1_4:54629869-54629888 Msa0170530:CDS 45.0%
GTATTATCTCGTGGAACACG+TGG + chr1_4:54628531-54628550 None:intergenic 45.0%
TCGATCGGTTGGATCTTCAT+CGG + chr1_4:54628637-54628656 None:intergenic 45.0%
AAAGACTCTTCGTGTTCGAC+CGG - chr1_4:54628728-54628747 Msa0170530:CDS 45.0%
TTGACGCGTTTGAAAACTGC+CGG + chr1_4:54628750-54628769 None:intergenic 45.0%
CTCCGTTGCCTTAGCAAAAA+TGG - chr1_4:54628858-54628877 Msa0170530:CDS 45.0%
!!! TTGCGAGTGAGTTTTGAGAC+TGG + chr1_4:54628922-54628941 None:intergenic 45.0%
!! GCTACTGGTTCTTTCAACGA+TGG - chr1_4:54629015-54629034 Msa0170530:CDS 45.0%
! ACTGGTTCTTTCAACGATGG+CGG - chr1_4:54629018-54629037 Msa0170530:CDS 45.0%
! AATACCTTGTGCGAGTGTTG+CGG - chr1_4:54629160-54629179 Msa0170530:CDS 45.0%
TTGGGGAAAAATGTACCAGC+TGG + chr1_4:54629344-54629363 None:intergenic 45.0%
ATGTGTTTGTGGAAGGTGAG+AGG - chr1_4:54629463-54629482 Msa0170530:CDS 45.0%
! GTTTGAGATTGCTCGATCGA+CGG - chr1_4:54629515-54629534 Msa0170530:intron 45.0%
! TTTGAGATTGCTCGATCGAC+GGG - chr1_4:54629516-54629535 Msa0170530:intron 45.0%
GTGGAGGAAGTCAGAGTATA+TGG - chr1_4:54629671-54629690 Msa0170530:CDS 45.0%
TGGTGAGAAAATCTCACCGA+CGG - chr1_4:54629869-54629888 Msa0170530:CDS 45.0%
!! TAAAAAATTTCAAAAAAATT+GGG + chr1_4:54629362-54629381 None:intergenic 5.0%
!! ATAAAAAATTTCAAAAAAAT+TGG + chr1_4:54629363-54629382 None:intergenic 5.0%
!! TAAAAAATTTCAAAAAAATT+GGG + chr1_4:54629362-54629381 None:intergenic 5.0%
!! ATAAAAAATTTCAAAAAAAT+TGG + chr1_4:54629363-54629382 None:intergenic 5.0%
CGCCGGTGAAATGAACATTC+CGG - chr1_4:54628453-54628472 Msa0170530:three_prime_UTR 50.0%
CGCCGGAATGTTCATTTCAC+CGG + chr1_4:54628458-54628477 None:intergenic 50.0%
GGCGAGACGTGCATTGTTAA+TGG + chr1_4:54628497-54628516 None:intergenic 50.0%
TTATCTCGTGGAACACGTGG+CGG + chr1_4:54628528-54628547 None:intergenic 50.0%
CTGAATCGATGTCGATCGGT+TGG + chr1_4:54628648-54628667 None:intergenic 50.0%
CGATTCAGAGAAGTTAGCCG+TGG - chr1_4:54628660-54628679 Msa0170530:three_prime_UTR 50.0%
GACGTCGTTTCGAACAACCA+CGG + chr1_4:54628680-54628699 None:intergenic 50.0%
TCAGAGAAACCTATCGTCGC+CGG - chr1_4:54628787-54628806 Msa0170530:CDS 50.0%
GCTAGGCTCAAACGGTTCAT+CGG + chr1_4:54628839-54628858 None:intergenic 50.0%
TTTGCTAAGGCAACGGAGCT+AGG + chr1_4:54628856-54628875 None:intergenic 50.0%
TTCGGCGAATCTATCGCTAC+TGG - chr1_4:54629000-54629019 Msa0170530:CDS 50.0%
ATACGACGGTGACGATCTGA+CGG + chr1_4:54629602-54629621 None:intergenic 50.0%
TCAGATCGTCACCGTCGTAT+CGG - chr1_4:54629602-54629621 Msa0170530:intron 50.0%
GAGTCTGTCACGAAGGTTGT+CGG + chr1_4:54629747-54629766 None:intergenic 50.0%
AACCTTCGTGACAGACTCGA+AGG - chr1_4:54629749-54629768 Msa0170530:CDS 50.0%
GGAGAGTGATTGTGGTGAGT+GGG - chr1_4:54629794-54629813 Msa0170530:CDS 50.0%
GGTGAGTGGGAACTGATCTT+CGG - chr1_4:54629807-54629826 Msa0170530:CDS 50.0%
CAGGAATCGGAAACTGTCTC+CGG - chr1_4:54629846-54629865 Msa0170530:CDS 50.0%
! CGGTGAGATTTTCTCACCAC+CGG + chr1_4:54629868-54629887 None:intergenic 50.0%
TGAGAAAATCTCACCGACGG+TGG - chr1_4:54629872-54629891 Msa0170530:CDS 50.0%
ACTTCCGGTAATTGCCACGT+CGG + chr1_4:54629903-54629922 None:intergenic 50.0%
TGTTGAGAAAGGAGCGACAG+TGG - chr1_4:54629935-54629954 Msa0170530:CDS 50.0%
CGCCGGTGAAATGAACATTC+CGG - chr1_4:54628453-54628472 Msa0170530:three_prime_UTR 50.0%
CGCCGGAATGTTCATTTCAC+CGG + chr1_4:54628458-54628477 None:intergenic 50.0%
GGCGAGACGTGCATTGTTAA+TGG + chr1_4:54628497-54628516 None:intergenic 50.0%
TTATCTCGTGGAACACGTGG+CGG + chr1_4:54628528-54628547 None:intergenic 50.0%
CTGAATCGATGTCGATCGGT+TGG + chr1_4:54628648-54628667 None:intergenic 50.0%
CGATTCAGAGAAGTTAGCCG+TGG - chr1_4:54628660-54628679 Msa0170530:three_prime_UTR 50.0%
GACGTCGTTTCGAACAACCA+CGG + chr1_4:54628680-54628699 None:intergenic 50.0%
TCAGAGAAACCTATCGTCGC+CGG - chr1_4:54628787-54628806 Msa0170530:CDS 50.0%
GCTAGGCTCAAACGGTTCAT+CGG + chr1_4:54628839-54628858 None:intergenic 50.0%
TTTGCTAAGGCAACGGAGCT+AGG + chr1_4:54628856-54628875 None:intergenic 50.0%
TTCGGCGAATCTATCGCTAC+TGG - chr1_4:54629000-54629019 Msa0170530:CDS 50.0%
ATACGACGGTGACGATCTGA+CGG + chr1_4:54629602-54629621 None:intergenic 50.0%
TCAGATCGTCACCGTCGTAT+CGG - chr1_4:54629602-54629621 Msa0170530:intron 50.0%
GAGTCTGTCACGAAGGTTGT+CGG + chr1_4:54629747-54629766 None:intergenic 50.0%
AACCTTCGTGACAGACTCGA+AGG - chr1_4:54629749-54629768 Msa0170530:CDS 50.0%
GGAGAGTGATTGTGGTGAGT+GGG - chr1_4:54629794-54629813 Msa0170530:CDS 50.0%
GGTGAGTGGGAACTGATCTT+CGG - chr1_4:54629807-54629826 Msa0170530:CDS 50.0%
CAGGAATCGGAAACTGTCTC+CGG - chr1_4:54629846-54629865 Msa0170530:CDS 50.0%
! CGGTGAGATTTTCTCACCAC+CGG + chr1_4:54629868-54629887 None:intergenic 50.0%
TGAGAAAATCTCACCGACGG+TGG - chr1_4:54629872-54629891 Msa0170530:CDS 50.0%
ACTTCCGGTAATTGCCACGT+CGG + chr1_4:54629903-54629922 None:intergenic 50.0%
TGTTGAGAAAGGAGCGACAG+TGG - chr1_4:54629935-54629954 Msa0170530:CDS 50.0%
GCAACGGAGCTAGGCTCAAA+CGG + chr1_4:54628847-54628866 None:intergenic 55.0%
TCGATCGACGGGAACGTTCA+AGG - chr1_4:54629527-54629546 Msa0170530:intron 55.0%
TACTCTGACTTCCTCCACGG+CGG + chr1_4:54629669-54629688 None:intergenic 55.0%
! AGACGGATTCACTCTGCTGC+AGG + chr1_4:54629718-54629737 None:intergenic 55.0%
!! AAGGTTGTCGGTGACGGAGA+CGG + chr1_4:54629735-54629754 None:intergenic 55.0%
GTCACGAAGGTTGTCGGTGA+CGG + chr1_4:54629741-54629760 None:intergenic 55.0%
CTCCTTCGAGTCTGTCACGA+AGG + chr1_4:54629754-54629773 None:intergenic 55.0%
CTTCGTGACAGACTCGAAGG+AGG - chr1_4:54629752-54629771 Msa0170530:CDS 55.0%
GACTCGAAGGAGGATCTGAC+CGG - chr1_4:54629762-54629781 Msa0170530:CDS 55.0%
GTTGCGTCGGAGAGTGATTG+TGG - chr1_4:54629786-54629805 Msa0170530:CDS 55.0%
CGGAGAGTGATTGTGGTGAG+TGG - chr1_4:54629793-54629812 Msa0170530:CDS 55.0%
GAATCGGAAACTGTCTCCGG+TGG - chr1_4:54629849-54629868 Msa0170530:CDS 55.0%
GTTGCCGACGTGGCAATTAC+CGG - chr1_4:54629896-54629915 Msa0170530:CDS 55.0%
AAAGGAGCGACAGTGGTGAC+TGG - chr1_4:54629942-54629961 Msa0170530:CDS 55.0%
GCAACGGAGCTAGGCTCAAA+CGG + chr1_4:54628847-54628866 None:intergenic 55.0%
TCGATCGACGGGAACGTTCA+AGG - chr1_4:54629527-54629546 Msa0170530:intron 55.0%
TACTCTGACTTCCTCCACGG+CGG + chr1_4:54629669-54629688 None:intergenic 55.0%
! AGACGGATTCACTCTGCTGC+AGG + chr1_4:54629718-54629737 None:intergenic 55.0%
!! AAGGTTGTCGGTGACGGAGA+CGG + chr1_4:54629735-54629754 None:intergenic 55.0%
GTCACGAAGGTTGTCGGTGA+CGG + chr1_4:54629741-54629760 None:intergenic 55.0%
CTCCTTCGAGTCTGTCACGA+AGG + chr1_4:54629754-54629773 None:intergenic 55.0%
CTTCGTGACAGACTCGAAGG+AGG - chr1_4:54629752-54629771 Msa0170530:CDS 55.0%
GACTCGAAGGAGGATCTGAC+CGG - chr1_4:54629762-54629781 Msa0170530:CDS 55.0%
GTTGCGTCGGAGAGTGATTG+TGG - chr1_4:54629786-54629805 Msa0170530:CDS 55.0%
CGGAGAGTGATTGTGGTGAG+TGG - chr1_4:54629793-54629812 Msa0170530:CDS 55.0%
GAATCGGAAACTGTCTCCGG+TGG - chr1_4:54629849-54629868 Msa0170530:CDS 55.0%
GTTGCCGACGTGGCAATTAC+CGG - chr1_4:54629896-54629915 Msa0170530:CDS 55.0%
AAAGGAGCGACAGTGGTGAC+TGG - chr1_4:54629942-54629961 Msa0170530:CDS 55.0%
CCGGCGAGTTTCACTATCGC+CGG + chr1_4:54628439-54628458 None:intergenic 60.0%
CCGGCGATAGTGAAACTCGC+CGG - chr1_4:54628436-54628455 Msa0170530:three_prime_UTR 60.0%
GAACACGTGGCGGCGATGAT+TGG + chr1_4:54628518-54628537 None:intergenic 60.0%
GGTTCATCGGACTTGTCGCC+GGG + chr1_4:54628826-54628845 None:intergenic 60.0%
CGGTTCATCGGACTTGTCGC+CGG + chr1_4:54628827-54628846 None:intergenic 60.0%
CTCTCCGCAACACTCGCACA+AGG + chr1_4:54629167-54629186 None:intergenic 60.0%
GATCGTCACCGTCGTATCGG+AGG - chr1_4:54629605-54629624 Msa0170530:intron 60.0%
ACTCTGACTTCCTCCACGGC+GGG + chr1_4:54629668-54629687 None:intergenic 60.0%
CGGATTCACTCTGCTGCAGG+AGG + chr1_4:54629715-54629734 None:intergenic 60.0%
ATCACTCTCCGACGCAACGC+CGG + chr1_4:54629784-54629803 None:intergenic 60.0%
CCGGCGAGTTTCACTATCGC+CGG + chr1_4:54628439-54628458 None:intergenic 60.0%
CCGGCGATAGTGAAACTCGC+CGG - chr1_4:54628436-54628455 Msa0170530:three_prime_UTR 60.0%
GAACACGTGGCGGCGATGAT+TGG + chr1_4:54628518-54628537 None:intergenic 60.0%
GGTTCATCGGACTTGTCGCC+GGG + chr1_4:54628826-54628845 None:intergenic 60.0%
CGGTTCATCGGACTTGTCGC+CGG + chr1_4:54628827-54628846 None:intergenic 60.0%
CTCTCCGCAACACTCGCACA+AGG + chr1_4:54629167-54629186 None:intergenic 60.0%
GATCGTCACCGTCGTATCGG+AGG - chr1_4:54629605-54629624 Msa0170530:intron 60.0%
ACTCTGACTTCCTCCACGGC+GGG + chr1_4:54629668-54629687 None:intergenic 60.0%
CGGATTCACTCTGCTGCAGG+AGG + chr1_4:54629715-54629734 None:intergenic 60.0%
ATCACTCTCCGACGCAACGC+CGG + chr1_4:54629784-54629803 None:intergenic 60.0%
GGAACTTCGCCGGCGACGAT+AGG + chr1_4:54628799-54628818 None:intergenic 65.0%
GCCGGCGAAGTTCCACTTCC+CGG - chr1_4:54628805-54628824 Msa0170530:CDS 65.0%
GCCGGGAAGTGGAACTTCGC+CGG + chr1_4:54628809-54628828 None:intergenic 65.0%
TCGGACTTGTCGCCGGGAAG+TGG + chr1_4:54628820-54628839 None:intergenic 65.0%
! CGATGGCGGTGACGCACTCA+AGG - chr1_4:54629032-54629051 Msa0170530:CDS 65.0%
CGTCACCGTCGTATCGGAGG+CGG - chr1_4:54629608-54629627 Msa0170530:intron 65.0%
CTTCGCCGCCTCCGATACGA+CGG + chr1_4:54629616-54629635 None:intergenic 65.0%
AAGGAATGCCTGTCCCGCCG+TGG - chr1_4:54629652-54629671 Msa0170530:CDS 65.0%
GGATCTGACCGGCGTTGCGT+CGG - chr1_4:54629773-54629792 Msa0170530:CDS 65.0%
CACGTCGGCAACACCACCGT+CGG + chr1_4:54629888-54629907 None:intergenic 65.0%
GGAACTTCGCCGGCGACGAT+AGG + chr1_4:54628799-54628818 None:intergenic 65.0%
GCCGGCGAAGTTCCACTTCC+CGG - chr1_4:54628805-54628824 Msa0170530:CDS 65.0%
GCCGGGAAGTGGAACTTCGC+CGG + chr1_4:54628809-54628828 None:intergenic 65.0%
TCGGACTTGTCGCCGGGAAG+TGG + chr1_4:54628820-54628839 None:intergenic 65.0%
! CGATGGCGGTGACGCACTCA+AGG - chr1_4:54629032-54629051 Msa0170530:CDS 65.0%
CGTCACCGTCGTATCGGAGG+CGG - chr1_4:54629608-54629627 Msa0170530:intron 65.0%
CTTCGCCGCCTCCGATACGA+CGG + chr1_4:54629616-54629635 None:intergenic 65.0%
AAGGAATGCCTGTCCCGCCG+TGG - chr1_4:54629652-54629671 Msa0170530:CDS 65.0%
GGATCTGACCGGCGTTGCGT+CGG - chr1_4:54629773-54629792 Msa0170530:CDS 65.0%
CACGTCGGCAACACCACCGT+CGG + chr1_4:54629888-54629907 None:intergenic 65.0%
GAATGCCTGTCCCGCCGTGG+AGG - chr1_4:54629655-54629674 Msa0170530:CDS 70.0%
GACTTCCTCCACGGCGGGAC+AGG + chr1_4:54629663-54629682 None:intergenic 70.0%
!! CGACGGTGGTGTTGCCGACG+TGG - chr1_4:54629886-54629905 Msa0170530:CDS 70.0%
GAATGCCTGTCCCGCCGTGG+AGG - chr1_4:54629655-54629674 Msa0170530:CDS 70.0%
GACTTCCTCCACGGCGGGAC+AGG + chr1_4:54629663-54629682 None:intergenic 70.0%
!! CGACGGTGGTGTTGCCGACG+TGG - chr1_4:54629886-54629905 Msa0170530:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 54628361 54630306 54628361 ID=Msa0170530;Name=Msa0170530
chr1_4 mRNA 54628361 54630306 54628361 ID=Msa0170530-mRNA-1;Parent=Msa0170530;Name=Msa0170530-mRNA-1;_AED=0.03;_eAED=0.03;_QI=267|1|1|1|1|1|3|323|385
chr1_4 exon 54628361 54629222 54628361 ID=Msa0170530-mRNA-1:exon:16351;Parent=Msa0170530-mRNA-1
chr1_4 exon 54629320 54629512 54629320 ID=Msa0170530-mRNA-1:exon:16350;Parent=Msa0170530-mRNA-1
chr1_4 exon 54629614 54630306 54629614 ID=Msa0170530-mRNA-1:exon:16349;Parent=Msa0170530-mRNA-1
chr1_4 five_prime_UTR 54630040 54630306 54630040 ID=Msa0170530-mRNA-1:five_prime_utr;Parent=Msa0170530-mRNA-1
chr1_4 CDS 54629614 54630039 54629614 ID=Msa0170530-mRNA-1:cds;Parent=Msa0170530-mRNA-1
chr1_4 CDS 54629320 54629512 54629320 ID=Msa0170530-mRNA-1:cds;Parent=Msa0170530-mRNA-1
chr1_4 CDS 54628684 54629222 54628684 ID=Msa0170530-mRNA-1:cds;Parent=Msa0170530-mRNA-1
chr1_4 three_prime_UTR 54628361 54628683 54628361 ID=Msa0170530-mRNA-1:three_prime_utr;Parent=Msa0170530-mRNA-1
Gene Sequence

>Msa0170530

ATGTCTCCGATGAAGATCCAACCGATCGACATCGATTCAGAGAAGTTAGCCGTGGTTGTTCGAAACGACGTCGTTAAGCCTGTGTTGAAATCTCGTCTGAAAAGACTCTTCGTGTTCGACCGGCAGTTTTCAAACGCGTCAAAAACTTCCACTAACTTCTCAGAGAAACCTATCGTCGCCGGCGAAGTTCCACTTCCCGGCGACAAGTCCGATGAACCGTTTGAGCCTAGCTCCGTTGCCTTAGCAAAAATGGTGCAGAGTTTCATCGAAGAGAGTAACGAGAAACAAAATCCAGTCTCAAAACTCACTCGCAATAGATGCAACTGCTTTAACGGTAACAGTAACGATAGCTCCGACGAAGAACTTGATTTCTTCGGCGAATCTATCGCTACTGGTTCTTTCAACGATGGCGGTGACGCACTCAAGAGTTTAATACCTTGTGCGAGTGTTGCGGAGAGAAATCTCTTAGCTGATGCATCCAAAATAGTTGACAAAAACAGTAAAGTTTTCAAAGGAAAAAATGATTTGAGAAAAATCGTTGCAGAAAATCTTCAATCTCTAGGTTACGATTCTTCGATTTGCAAATCGAAATGGCACAAAACAAAATCTCATCCAGCTGGTGACTATGAATATATCGATGTGTTTGTGGAAGGTGAGAGGTTGATCATTGATATTGATTTTCGTTCGGAGTTTGAGATTGCTCGATCGACGGGAACGTTCAAGGCGATTCTTCAGTTTCTTCCTTACATTTTCGTCGGGAAATCGGATCGTCTCCGTCAGATCGTCACCGTCGTATCGGAGGCGGCGAAGCAGAGTTTGAAGAAGAAAGGAATGCCTGTCCCGCCGTGGAGGAAGTCAGAGTATATGGTAGCTAAGTGGCTCTCAACCTCCTGCAGCAGAGTGAATCCGTCTCCGTCACCGACAACCTTCGTGACAGACTCGAAGGAGGATCTGACCGGCGTTGCGTCGGAGAGTGATTGTGGTGAGTGGGAACTGATCTTCGGTGAGAAAATATCTTTGCAGGAATCGGAAACTGTCTCCGGTGGTGAGAAAATCTCACCGACGGTGGTGTTGCCGACGTGGCAATTACCGGAAGTGAAAGTAAAGAGTGTTGAGAAAGGAGCGACAGTGGTGACTGGATTTAGCCTCAAACCATAG
Protein sequence

>Msa0170530

MSPMKIQPIDIDSEKLAVVVRNDVVKPVLKSRLKRLFVFDRQFSNASKTSTNFSEKPIVAGEVPLPGDKSDEPFEPSSVALAKMVQSFIEESNEKQNPVSKLTRNRCNCFNGNSNDSSDEELDFFGESIATGSFNDGGDALKSLIPCASVAERNLLADASKIVDKNSKVFKGKNDLRKIVAENLQSLGYDSSICKSKWHKTKSHPAGDYEYIDVFVEGERLIIDIDFRSEFEIARSTGTFKAILQFLPYIFVGKSDRLRQIVTVVSEAAKQSLKKKGMPVPPWRKSEYMVAKWLSTSCSRVNPSPSPTTFVTDSKEDLTGVASESDCGEWELIFGEKISLQESETVSGGEKISPTVVLPTWQLPEVKVKSVEKGATVVTGFSLKP*