AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0835340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835340 MtrunA17_Chr5g0401291 93.743 879 32 4 26 887 25 897 0.0 1519
Msa0835340 MtrunA17_Chr4g0054001 54.478 938 296 25 8 898 4 857 0.0 818
Msa0835340 MtrunA17_Chr7g0249941 54.957 464 176 10 461 898 556 1012 2.72e-143 451
Msa0835340 MtrunA17_Chr8g0347491 46.828 536 194 13 394 878 554 1049 4.98e-121 393
Msa0835340 MtrunA17_Chr1g0192111 50.611 409 168 9 472 856 497 895 1.99e-115 374
Msa0835340 MtrunA17_Chr2g0319201 47.418 426 187 9 459 854 382 800 8.92e-107 350
Msa0835340 MtrunA17_Chr4g0042081 48.325 418 178 10 467 854 527 936 2.42e-104 346
Msa0835340 MtrunA17_Chr4g0023611 43.775 498 204 11 394 854 344 802 1.06e-100 333
Msa0835340 MtrunA17_Chr2g0323071 39.231 520 234 12 388 861 244 727 4.44e-86 292
Msa0835340 MtrunA17_Chr5g0414941 39.907 431 205 10 472 856 414 836 4.42e-82 282
Msa0835340 MtrunA17_Chr3g0118231 35.306 490 262 8 394 856 182 643 8.65e-76 261
Msa0835340 MtrunA17_Chr8g0364331 34.462 502 254 12 394 855 260 726 2.53e-75 261
Msa0835340 MtrunA17_Chr4g0074091 27.807 374 211 9 453 801 773 1112 6.15e-30 128
Msa0835340 MtrunA17_Chr4g0061111 27.473 364 193 12 473 804 1171 1495 1.62e-26 117
Msa0835340 MtrunA17_Chr1g0150261 26.776 366 202 10 465 801 1357 1685 3.54e-26 116
Msa0835340 MtrunA17_Chr5g0409151 27.225 191 108 4 613 801 25 186 7.55e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835340 AT5G67470.1 68.090 445 110 7 464 888 453 885 0.0 582
Msa0835340 AT3G25500.1 57.955 440 150 7 462 878 588 1015 3.83e-154 481
Msa0835340 AT2G43800.1 55.140 428 154 8 465 865 440 856 6.66e-138 434
Msa0835340 AT3G05470.1 48.301 412 173 9 471 854 469 868 5.82e-109 357
Msa0835340 AT5G54650.2 44.725 436 199 7 470 873 440 865 2.62e-95 320
Msa0835340 AT5G54650.1 44.725 436 199 7 470 873 440 865 2.62e-95 320
Msa0835340 AT5G48360.1 48.094 341 129 6 538 855 466 781 2.05e-84 288
Msa0835340 AT1G70140.1 39.813 427 214 8 472 863 305 723 1.93e-82 282
Msa0835340 AT1G59910.1 39.277 415 213 9 470 854 460 865 3.99e-76 268
Msa0835340 AT3G07540.1 38.983 413 178 7 466 854 472 834 3.66e-67 241
Msa0835340 AT1G24150.2 40.845 213 103 3 472 666 312 519 1.95e-37 148
Msa0835340 AT4G15200.4 47.651 149 69 4 464 610 321 462 7.26e-31 127
Msa0835340 AT4G15200.2 47.651 149 69 4 464 610 322 463 7.71e-31 127
Msa0835340 AT3G25493.1 50.909 110 52 1 769 878 30 137 2.34e-29 115
Msa0835340 AT5G58160.1 27.855 359 190 11 472 801 838 1156 4.26e-26 116
Msa0835340 AT5G07740.3 27.318 399 220 14 470 812 1222 1606 5.93e-26 116
Msa0835340 AT5G07740.1 27.318 399 220 14 470 812 1244 1628 6.66e-26 115
Msa0835340 AT1G31810.2 25.587 383 227 8 470 828 816 1164 2.10e-25 114
Msa0835340 AT1G31810.1 25.587 383 227 8 470 828 816 1164 2.10e-25 114
Msa0835340 AT5G07740.2 25.635 433 218 16 470 812 1244 1662 2.42e-21 101
Msa0835340 AT5G07770.3 22.340 376 221 8 473 822 199 529 9.40e-21 98.6
Msa0835340 AT5G07770.1 22.340 376 221 8 473 822 192 522 1.29e-20 98.2
Msa0835340 AT5G07770.4 26.641 259 149 6 473 707 58 299 2.05e-20 97.1
Msa0835340 AT3G32400.2 27.059 255 153 8 470 698 93 340 8.75e-19 91.3
Msa0835340 AT5G07770.2 23.256 301 183 4 541 822 224 495 1.59e-18 91.3
Msa0835340 AT4G15200.3 43.636 110 55 3 464 571 322 426 4.47e-18 88.6
Msa0835340 AT5G07760.2 27.397 219 140 4 541 741 523 740 1.22e-17 88.6
Msa0835340 AT5G07760.1 27.397 219 140 4 541 741 523 740 1.29e-17 88.6
Msa0835340 AT5G07650.2 28.977 176 108 1 540 698 468 643 1.27e-15 82.0
Msa0835340 AT2G25050.1 22.454 383 211 12 470 801 742 1089 2.42e-15 81.6
Msa0835340 AT3G32400.1 26.104 249 143 9 470 684 85 326 5.14e-13 72.8
Msa0835340 AT5G07780.1 24.521 261 149 7 470 698 75 319 1.38e-12 71.6

Find 238 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAATTCATGTCTGAATT+TGG 0.144023 5_4:+8640682 None:intergenic
CCTTTATATCTACGAGTTTC+AGG 0.157132 5_4:+8636867 None:intergenic
AAACTCTTCCTCGTTAAATT+TGG 0.167753 5_4:+8636736 None:intergenic
TGAAGTTTCTGAAGCTCTTT+TGG 0.202919 5_4:-8638831 Msa0835340:CDS
TTTCTAACACCTTGTTCTTT+TGG 0.224439 5_4:+8638953 None:intergenic
ACCACCGCCACCTCCGAATT+TGG 0.228198 5_4:-8639560 Msa0835340:CDS
ACAATCATGAAAATTCTTAA+AGG 0.232010 5_4:+8636401 None:intergenic
CTGTTCTGAGAACAGCTTCC+AGG 0.238609 5_4:+8636951 None:intergenic
TGAGGTTTCATGGTGAATTT+TGG 0.281268 5_4:+8640648 None:intergenic
CCTGAAACTCGTAGATATAA+AGG 0.289953 5_4:-8636867 Msa0835340:CDS
AAGAAATTGCCTCTCATATC+TGG 0.299218 5_4:+8636560 None:intergenic
GAAAGAGCAGATTTCGATTT+CGG 0.313337 5_4:+8639718 None:intergenic
CGAATTCTTCTGCATCTATA+AGG 0.316195 5_4:-8639393 Msa0835340:CDS
TTGCAAATTTGAACTCTCAT+TGG 0.320314 5_4:-8636139 Msa0835340:three_prime_UTR
ACGTATGCTATAGTCAAAAT+AGG 0.325006 5_4:-8635891 Msa0835340:three_prime_UTR
GGCGGTGGAGGTGGTGGTGG+TGG 0.325906 5_4:+8639460 None:intergenic
CACCATTGCCTGTTCTTAAC+AGG 0.326672 5_4:-8636274 Msa0835340:CDS
TAGTAGGAGCCATCTTTACT+AGG 0.328099 5_4:+8637288 None:intergenic
CATACAGTTGAACACTTTCC+TGG 0.329821 5_4:-8636013 Msa0835340:three_prime_UTR
AGGCAGCAAGTGAGGAATTA+AGG 0.331528 5_4:-8636997 Msa0835340:CDS
GGTGGAGGTGGTGGTGGTGG+TGG 0.333560 5_4:+8639463 None:intergenic
GGTGGCGGTGGAGGTGGTGG+TGG 0.334944 5_4:+8639457 None:intergenic
ACTTTCCTGGTTCACTCAAA+TGG 0.337820 5_4:-8636000 Msa0835340:three_prime_UTR
TTGTGGTCCAAGAGATCATT+AGG 0.342540 5_4:-8636814 Msa0835340:CDS
AGAAGAAATTGTGAGGATTA+AGG 0.351806 5_4:-8636504 Msa0835340:CDS
AGCTCAGCACCCAGACCTTC+AGG 0.352759 5_4:+8637320 None:intergenic
TTTATCTCTTCCTCTTTAGT+AGG 0.353661 5_4:+8637272 None:intergenic
AAAATATAGCTATACTGTTA+AGG 0.357268 5_4:-8638874 Msa0835340:CDS
GGAGGTGGCGGTGGAGGTGG+TGG 0.357279 5_4:+8639454 None:intergenic
TGATTCGACGGTGGTGCGTC+TGG 0.362482 5_4:+8640396 None:intergenic
CGTTAAATTTGGAGTCCATT+TGG 0.363903 5_4:+8636747 None:intergenic
GACGGCGACCTTTCGAAACT+TGG 0.364098 5_4:-8637236 Msa0835340:CDS
GAAGTTACTGAATACTTTCA+TGG 0.364864 5_4:-8636449 Msa0835340:CDS
AACAGGGAGTCCTGAAGGTC+TGG 0.371619 5_4:-8637330 Msa0835340:intron
TGCAAATTTGAACTCTCATT+GGG 0.373007 5_4:-8636138 Msa0835340:three_prime_UTR
CCGTTTGGAGGTTTACTTAA+CGG 0.379088 5_4:+8639955 None:intergenic
TGCCATTGTCCTCATTCAAA+TGG 0.385400 5_4:-8635957 Msa0835340:three_prime_UTR
GGCGGTGGTGCTGAGAATTT+CGG 0.385880 5_4:+8639574 None:intergenic
ATGATGACGTGTCGAATATC+AGG 0.389397 5_4:+8639685 None:intergenic
GACCACATTGCTACACTTTG+TGG 0.390580 5_4:-8636831 Msa0835340:CDS
GCCGGTGGAATGTTTCCGTT+TGG 0.394668 5_4:+8639940 None:intergenic
GATTGAAGATGCGCCAAATT+CGG 0.397654 5_4:+8639547 None:intergenic
TCGGAGGAAGGTTGTGGTGG+TGG 0.398806 5_4:+8640444 None:intergenic
TACGTTACAAAGCTTGAAAC+GGG 0.399392 5_4:-8636620 Msa0835340:CDS
GTCATTGGAGGTGGCGGTGG+AGG 0.407110 5_4:+8639448 None:intergenic
CCGGTTATTCTTCAAACTCC+TGG 0.408210 5_4:-8636969 Msa0835340:CDS
ATTGGAGGTGGCGGTGGAGG+TGG 0.413991 5_4:+8639451 None:intergenic
CCAGGAGTTTGAAGAATAAC+CGG 0.416902 5_4:+8636969 None:intergenic
TTTCAATGATTCTAATGTAC+TGG 0.418156 5_4:+8635710 None:intergenic
GGAGGAGTTTGCTTGATAGA+AGG 0.418877 5_4:+8639661 None:intergenic
AGAAAAGAGGAAACTTCTTT+CGG 0.420368 5_4:+8640754 None:intergenic
ATAGCCATACCTCAAGGGTT+TGG 0.421616 5_4:+8637097 None:intergenic
ATACCGATCGGATCGCTTAA+CGG 0.423288 5_4:+8640008 None:intergenic
GATATGATGGAGTCTTTGTT+TGG 0.423986 5_4:-8639007 Msa0835340:CDS
CTGGAAGCTGTTCTCAGAAC+AGG 0.424510 5_4:-8636950 Msa0835340:CDS
GGTGGTGGTGCTGTACTCGC+TGG 0.429739 5_4:+8640489 None:intergenic
CTTTCCTGGTTCACTCAAAT+GGG 0.429777 5_4:-8635999 Msa0835340:three_prime_UTR
CGTGTCATTGGAGGTGGCGG+TGG 0.432189 5_4:+8639445 None:intergenic
CTTCAGACCTAATGATCTCT+TGG 0.432622 5_4:+8636807 None:intergenic
CAATGCAATGCTTTCAACTT+CGG 0.435102 5_4:+8639226 None:intergenic
CTGAAACTCGTAGATATAAA+GGG 0.436598 5_4:-8636866 Msa0835340:CDS
TCATTCGCCGCAGAATTCTT+CGG 0.436758 5_4:-8639869 Msa0835340:CDS
AAATATAGCTATACTGTTAA+GGG 0.440267 5_4:-8638873 Msa0835340:CDS
CAATCATGAAAATTCTTAAA+GGG 0.441745 5_4:+8636402 None:intergenic
GCTTGAATTATGAGGTTTCA+TGG 0.443793 5_4:+8640638 None:intergenic
GGTTTACTTAACGGCGGCAT+TGG 0.447145 5_4:+8639964 None:intergenic
GATTTGGTTTGCAAAGAAGT+TGG 0.447424 5_4:-8636356 Msa0835340:CDS
GCCAAATTCGGAGGTGGCGG+TGG 0.451685 5_4:+8639559 None:intergenic
GAGGAAGGTTGTGGTGGTGG+TGG 0.451868 5_4:+8640447 None:intergenic
GGCGGCATTGGCTGTAACTC+CGG 0.453098 5_4:+8639976 None:intergenic
GGTGGTGGTGGTGGAGTAGG+AGG 0.453954 5_4:+8639475 None:intergenic
GTTGTAGCGTTAGAAGTTAA+CGG 0.455696 5_4:+8640360 None:intergenic
GCTGTACTCGCTGGGAATAA+TGG 0.457255 5_4:+8640498 None:intergenic
TCGCTGGGAATAATGGTTGA+TGG 0.458107 5_4:+8640505 None:intergenic
AGGTCTGGGTGCTGAGCTAT+TGG 0.458304 5_4:-8637315 Msa0835340:CDS
CTACGTTACAAAGCTTGAAA+CGG 0.460088 5_4:-8636621 Msa0835340:CDS
TAGATTAAATGAAGATATGA+TGG 0.461193 5_4:-8639020 Msa0835340:CDS
TGGTGGTGGTATGACGGTGG+AGG 0.463215 5_4:+8640461 None:intergenic
AATTTGGAGTCCATTTGGTT+GGG 0.463510 5_4:+8636752 None:intergenic
CGAAGTTGAAAGCATTGCAT+TGG 0.466382 5_4:-8639225 Msa0835340:CDS
GATAGCTGACGTGGCGGTGG+AGG 0.466571 5_4:+8639643 None:intergenic
GCAGAATTCTTCGGTAAGTC+AGG 0.467099 5_4:-8639860 Msa0835340:CDS
TTCTCTCAGTAACGGTAGTC+CGG 0.470525 5_4:-8639797 Msa0835340:CDS
CGGAAGTATACCCAACCAAA+TGG 0.480730 5_4:-8636762 Msa0835340:CDS
GGTGGTGGTATGACGGTGGA+GGG 0.482879 5_4:+8640462 None:intergenic
CCATTGTACCTGTTAAGAAC+AGG 0.485981 5_4:+8636266 None:intergenic
TTATGATACGGTGAACGGTT+AGG 0.486732 5_4:+8640039 None:intergenic
CTGTTCTTAACAGGTACAAT+GGG 0.486759 5_4:-8636265 Msa0835340:CDS
CGATCGGTATCGACCGAGTC+CGG 0.487968 5_4:-8639995 Msa0835340:CDS
AAATTTGGAGTCCATTTGGT+TGG 0.488244 5_4:+8636751 None:intergenic
TTGTGGTGGTGGTGGTATGA+CGG 0.488419 5_4:+8640455 None:intergenic
TTGCTGTTTGATCTCAATGA+AGG 0.488965 5_4:+8636077 None:intergenic
CTCTCCATTGTTTCCCGCTG+AGG 0.489398 5_4:-8640729 Msa0835340:five_prime_UTR
TCTTTGTTTGGTTGCAACAA+TGG 0.489490 5_4:-8638995 Msa0835340:CDS
GGTATGACGGTGGAGGGTGA+TGG 0.489621 5_4:+8640468 None:intergenic
GGTGGAATGTTTCCGTTTGG+AGG 0.490417 5_4:+8639943 None:intergenic
TCCGATAGCTGACGTGGCGG+TGG 0.492256 5_4:+8639640 None:intergenic
ATTGGAAACCCTAGTAAAGA+TGG 0.492944 5_4:-8637297 Msa0835340:CDS
AGTGAAGGAGGTGGTTCTGT+TGG 0.496844 5_4:-8639364 Msa0835340:CDS
TTCATCAAATTCATCTGCTC+CGG 0.498145 5_4:-8640148 Msa0835340:CDS
ACACGCCGTATTCAGTTTCA+CGG 0.499766 5_4:-8639825 Msa0835340:CDS
ACGGCAACACAACCAGCAAA+AGG 0.504839 5_4:-8640327 Msa0835340:CDS
AATGGAATGTTGTCGGAGGA+AGG 0.505992 5_4:+8640432 None:intergenic
GAAGTTGAAAGCATTGCATT+GGG 0.508504 5_4:-8639224 Msa0835340:CDS
AGTAGGAGCCATCTTTACTA+GGG 0.508791 5_4:+8637289 None:intergenic
TCCGTTGGAATCGTAACGTT+AGG 0.508832 5_4:-8640279 Msa0835340:CDS
ATGGAAGAATGGAATGTTGT+CGG 0.509887 5_4:+8640425 None:intergenic
TTTGCTGGTTGTGTTGCCGT+TGG 0.510570 5_4:+8640330 None:intergenic
TCTGTTGGTAGTGTAAGAAA+AGG 0.511081 5_4:-8639349 Msa0835340:CDS
TCTTGAATGTCCTACTCCAT+CGG 0.512217 5_4:+8639600 None:intergenic
GTGGTGCGTCTGGATATTCA+TGG 0.512799 5_4:+8640406 None:intergenic
AGCTTCTTCAACAAGCCTCT+CGG 0.512915 5_4:+8639270 None:intergenic
GCCATTGTCCTCATTCAAAT+GGG 0.513310 5_4:-8635956 Msa0835340:three_prime_UTR
ATGACGGTGGAGGGTGATGG+TGG 0.514908 5_4:+8640471 None:intergenic
GTTGATTTCTGAATCGAAGT+TGG 0.517873 5_4:+8637137 None:intergenic
ACGGTGGAGGGTGATGGTGG+TGG 0.519524 5_4:+8640474 None:intergenic
ATTGGCTGTAACTCCGGACT+CGG 0.520143 5_4:+8639982 None:intergenic
TGGTATAAACATTAAAATGT+AGG 0.520292 5_4:+8635730 None:intergenic
TCTTCGGTAAGTCAGGAAGA+TGG 0.523226 5_4:-8639853 Msa0835340:CDS
TGCGCCAAATTCGGAGGTGG+CGG 0.523422 5_4:+8639556 None:intergenic
GGTGAACGGTTAGGCTTCTC+CGG 0.524180 5_4:+8640048 None:intergenic
GTTTCCCGCTGAGGAATTCA+CGG 0.524837 5_4:-8640720 Msa0835340:five_prime_UTR
AACGGATTGCATGTTGTGGC+TGG 0.524954 5_4:-8636707 Msa0835340:CDS
CGTTTCGTTACTTTCTTCGT+CGG 0.526269 5_4:+8639897 None:intergenic
ATTAAATGCATGTTCGTGGT+GGG 0.527872 5_4:-8636050 Msa0835340:three_prime_UTR
TCTTCTTGTGTGATGATGAT+CGG 0.529598 5_4:+8640533 None:intergenic
ACGGAATTCAGTTTATGATA+CGG 0.530304 5_4:+8640027 None:intergenic
AGAAAATTCGAAGCTACTAC+CGG 0.531207 5_4:+8640129 None:intergenic
GAATTACTTTCTTTCTTCGC+CGG 0.531635 5_4:+8639778 None:intergenic
ATAAGGAGGTTAAGTGAAGG+AGG 0.533192 5_4:-8639376 Msa0835340:CDS
CTTTCATGGGAATGCTGCAA+AGG 0.533599 5_4:-8636435 Msa0835340:CDS
TCTGGATATTCATGGAAGAA+TGG 0.534227 5_4:+8640414 None:intergenic
TGGTTTGCAAAGAAGTTGGA+AGG 0.536182 5_4:-8636352 Msa0835340:CDS
GCAGAAACTGCATCTGCAAA+CGG 0.538954 5_4:-8636782 Msa0835340:CDS
ATATACCTCCCATTTGAATG+AGG 0.539037 5_4:+8635948 None:intergenic
AGGATGCATGATAGAATTGT+TGG 0.540134 5_4:-8636332 Msa0835340:CDS
CCTGTTCTTAACAGGTACAA+TGG 0.541687 5_4:-8636266 Msa0835340:CDS
AAAGATGGCTCCTACTAAAG+AGG 0.542571 5_4:-8637282 Msa0835340:CDS
AAACATTAAATGCATGTTCG+TGG 0.544420 5_4:-8636054 Msa0835340:three_prime_UTR
TTCTGATCGTGCTACTGTGT+GGG 0.548187 5_4:-8639185 Msa0835340:CDS
GAATTCGAAACCACCGGTGT+CGG 0.548683 5_4:+8639409 None:intergenic
ATGTTGTCGGAGGAAGGTTG+TGG 0.549604 5_4:+8640438 None:intergenic
GTAGCTATAGCAATCTCCGT+TGG 0.550002 5_4:-8640294 Msa0835340:CDS
GGTCAACGATCAGAATCAAC+CGG 0.551067 5_4:-8640067 Msa0835340:CDS
TGGTGGTGGTGGTATGACGG+TGG 0.551222 5_4:+8640458 None:intergenic
ACAGGGAGTCCTGAAGGTCT+GGG 0.553891 5_4:-8637329 Msa0835340:intron
CTCTGCCGTGAAACTGAATA+CGG 0.554150 5_4:+8639820 None:intergenic
GTGAGGAATTAAGGAATAGC+CGG 0.557672 5_4:-8636988 Msa0835340:CDS
GTAGATATAAAGGGAACAGA+TGG 0.558654 5_4:-8636857 Msa0835340:CDS
CAAGAGATCATTAGGTCTGA+AGG 0.560003 5_4:-8636806 Msa0835340:CDS
TCCACCGCCACGTCAGCTAT+CGG 0.561384 5_4:-8639641 Msa0835340:CDS
AATTCCTCAGCGGGAAACAA+TGG 0.562807 5_4:+8640725 None:intergenic
CATTAAATGCATGTTCGTGG+TGG 0.563145 5_4:-8636051 Msa0835340:three_prime_UTR
GTAGCCCATTTGAGTGAACC+AGG 0.565511 5_4:+8635995 None:intergenic
AATGAAACAGGGAGTCCTGA+AGG 0.566792 5_4:-8637335 Msa0835340:intron
AAGTTACTGAATACTTTCAT+GGG 0.566826 5_4:-8636448 Msa0835340:CDS
ATGTTGAAGCTTGAATTATG+AGG 0.571481 5_4:+8640630 None:intergenic
CGTAACGTTAGGAATGTTGT+CGG 0.572626 5_4:-8640268 Msa0835340:CDS
CGACGAAGAAAGTAACGAAA+CGG 0.573818 5_4:-8639896 Msa0835340:CDS
TCTTCTTCCGACGACATCGC+CGG 0.574108 5_4:+8639922 None:intergenic
TGTTGAAGAAGCTAATGAAA+CGG 0.574348 5_4:-8639260 Msa0835340:CDS
TCTGCGGTCCAAGTTTCGAA+AGG 0.575439 5_4:+8637228 None:intergenic
TCTTCCGTGAATTCCTCAGC+GGG 0.576175 5_4:+8640716 None:intergenic
GAGGAAGAGTTTAAGAAGAA+CGG 0.577887 5_4:-8636725 Msa0835340:CDS
CGCTACAACAGCGAATCCAA+CGG 0.578077 5_4:-8640346 Msa0835340:CDS
ACCGTCGTTGACCTTCTCGA+AGG 0.578810 5_4:+8640087 None:intergenic
TTTCGTGTCATTGGAGGTGG+CGG 0.578958 5_4:+8639442 None:intergenic
ACAGGAAATAGAATGAATGT+TGG 0.583758 5_4:-8636932 Msa0835340:CDS
AGGAGGTTAAGTGAAGGAGG+TGG 0.584698 5_4:-8639373 Msa0835340:CDS
ATGTCCTACTCCATCGGAGG+AGG 0.584834 5_4:+8639606 None:intergenic
AAAATCAGTGTCGCCGACAC+CGG 0.585534 5_4:-8639422 Msa0835340:CDS
ATTCACATCATTAAAATGTG+TGG 0.585641 5_4:+8635844 None:intergenic
TTCTGTTGATCATGAGAACA+AGG 0.586576 5_4:-8638918 Msa0835340:CDS
ACAATGGAGAGAGAGAAAAG+AGG 0.588865 5_4:+8640741 None:intergenic
TCAGTTTATGATACGGTGAA+CGG 0.589581 5_4:+8640034 None:intergenic
CCGTTAAGTAAACCTCCAAA+CGG 0.593283 5_4:-8639955 Msa0835340:CDS
GTGGTGGTGCTGTACTCGCT+GGG 0.594657 5_4:+8640490 None:intergenic
GGGTTTGGAAAGACTTCTTG+AGG 0.594870 5_4:+8637112 None:intergenic
TATCTGCCAGGCAGCAAGTG+AGG 0.597764 5_4:-8637005 Msa0835340:intron
AAGAGAATTGTTCCTCTGTG+TGG 0.598217 5_4:+8640176 None:intergenic
GCTGCTTGATTCTGATTCGA+CGG 0.600193 5_4:+8640384 None:intergenic
TTAAATGCATGTTCGTGGTG+GGG 0.603383 5_4:-8636049 Msa0835340:three_prime_UTR
GAAGATGATGAAGATTATGA+TGG 0.603988 5_4:+8640605 None:intergenic
GAAAGATAGCCATACCTCAA+GGG 0.604920 5_4:+8637092 None:intergenic
GCAGAAGAATTCGAAACCAC+CGG 0.605400 5_4:+8639403 None:intergenic
CATTCCACCGGCGATGTCGT+CGG 0.605871 5_4:-8639929 Msa0835340:CDS
GATTAAGGCTCATGAGAGAG+AGG 0.608378 5_4:-8636489 Msa0835340:CDS
TGTTTCTCCGATAGCTGACG+TGG 0.609728 5_4:+8639634 None:intergenic
TGCTTTAAGAAATCTTTCTG+CGG 0.610044 5_4:+8637212 None:intergenic
ATGAATGTTGGTACTAATCG+AGG 0.613150 5_4:-8636920 Msa0835340:CDS
TTGTCGGAGGAAGGTTGTGG+TGG 0.614144 5_4:+8640441 None:intergenic
ACAAGATAGAAGCTCAGATG+AGG 0.615718 5_4:-8636240 Msa0835340:CDS
AAACAGTTAACCTCCTCCGA+TGG 0.618020 5_4:-8639616 Msa0835340:CDS
TTCACTAGTAGCAAAAGTGA+AGG 0.618040 5_4:-8636104 Msa0835340:three_prime_UTR
ATTCTTCTGCATCTATAAGG+AGG 0.618549 5_4:-8639390 Msa0835340:CDS
ATCAGTGTCGCCGACACCGG+TGG 0.619955 5_4:-8639419 Msa0835340:CDS
AGATGCGCCAAATTCGGAGG+TGG 0.620461 5_4:+8639553 None:intergenic
TTGTTCTCATGATCAACAGA+AGG 0.625101 5_4:+8638920 None:intergenic
CGGCAGAGTTCTCTCAGTAA+CGG 0.625992 5_4:-8639805 Msa0835340:CDS
TTAACCTCCTCCGATGGAGT+AGG 0.628605 5_4:-8639610 Msa0835340:CDS
CTTCTGATCGTGCTACTGTG+TGG 0.628803 5_4:-8639186 Msa0835340:CDS
GAAGAACGGATTGCATGTTG+TGG 0.629538 5_4:-8636711 Msa0835340:CDS
TCTTCCGACGACATCGCCGG+TGG 0.630955 5_4:+8639925 None:intergenic
TCCAAACGGAAACATTCCAC+CGG 0.631230 5_4:-8639941 Msa0835340:CDS
TGAGATCTTCTTCTTCCGAG+AGG 0.632668 5_4:-8639285 Msa0835340:CDS
TACCTGTTAAGAACAGGCAA+TGG 0.632916 5_4:+8636272 None:intergenic
GCTGGTCTCAGTAAAGACCT+TGG 0.636005 5_4:-8636689 Msa0835340:CDS
TTTGTATTCACAATACTAAG+GGG 0.636042 5_4:+8636208 None:intergenic
GAAGCTAATGAAACGGAAGG+TGG 0.641793 5_4:-8639253 Msa0835340:CDS
GAAGAAAGAAAGTAATTCGA+CGG 0.642566 5_4:-8639773 Msa0835340:CDS
GCTTGATTCTGATTCGACGG+TGG 0.642616 5_4:+8640387 None:intergenic
ATTCCGTTAAGCGATCCGAT+CGG 0.645648 5_4:-8640011 Msa0835340:CDS
TGAAGATGCGCCAAATTCGG+AGG 0.650181 5_4:+8639550 None:intergenic
GAAGTCTTTCCAAACCCTTG+AGG 0.654822 5_4:-8637106 Msa0835340:intron
GAAGAAGCTAATGAAACGGA+AGG 0.657154 5_4:-8639256 Msa0835340:CDS
ATTCAGTAACTTCTTTCACG+AGG 0.657593 5_4:+8636459 None:intergenic
TCCTAACGTTACGATTCCAA+CGG 0.658338 5_4:+8640278 None:intergenic
TATGAGAAACCAGATATGAG+AGG 0.659545 5_4:-8636569 Msa0835340:CDS
ATTGTCCTCATTCAAATGGG+AGG 0.660660 5_4:-8635953 Msa0835340:three_prime_UTR
GAACTGTGGAACCTTCGAGA+AGG 0.666216 5_4:-8640098 Msa0835340:CDS
ACGCAGAAGAAGAAATTGTG+AGG 0.668122 5_4:-8636511 Msa0835340:CDS
ATGCATGATAGAATTGTTGG+TGG 0.671664 5_4:-8636329 Msa0835340:CDS
TCTATAAGGAGGTTAAGTGA+AGG 0.672605 5_4:-8639379 Msa0835340:CDS
TCCCATTTGAATGAGGACAA+TGG 0.672995 5_4:+8635955 None:intergenic
CGGACTCGGTCGATACCGAT+CGG 0.675727 5_4:+8639996 None:intergenic
TTCTTCCGTGAATTCCTCAG+CGG 0.676446 5_4:+8640715 None:intergenic
GCTCCAAAACCAAAAGAACA+AGG 0.677455 5_4:-8638962 Msa0835340:CDS
GAAGAATGGAATGTTGTCGG+AGG 0.679549 5_4:+8640428 None:intergenic
TGAATGTCCTACTCCATCGG+AGG 0.684539 5_4:+8639603 None:intergenic
TGACTTACCGAAGAATTCTG+CGG 0.688640 5_4:+8639862 None:intergenic
TTTGGAGGTTTACTTAACGG+CGG 0.693198 5_4:+8639958 None:intergenic
ATTGTGATGACGGAATCTGT+CGG 0.696376 5_4:-8640808 None:intergenic
GACCACAAAGTGTAGCAATG+TGG 0.710439 5_4:+8636829 None:intergenic
TTCTCCGATAGCTGACGTGG+CGG 0.720484 5_4:+8639637 None:intergenic
ACGTTACAAAGCTTGAAACG+GGG 0.722165 5_4:-8636619 Msa0835340:CDS
ACCTTCGAGAAGGTCAACGA+CGG 0.731915 5_4:-8640088 Msa0835340:CDS
AATGGACTCCAAATTTAACG+AGG 0.750084 5_4:-8636744 Msa0835340:CDS
TAGTGAGTACTTCCACACAG+AGG 0.774217 5_4:-8640188 Msa0835340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAAAAAAATTTTTT+GGG + chr5_4:8638712-8638731 None:intergenic 0.0%
!!! AAAAAAAAAAAAAAATTTTT+TGG + chr5_4:8638713-8638732 None:intergenic 0.0%
!!! AAAAAATTTTTTTTTTTTTT+TGG - chr5_4:8638712-8638731 Msa0835340:intron 0.0%
!!! TTTTATTTTTTAATGAAACA+GGG - chr5_4:8639139-8639158 Msa0835340:intron 10.0%
!!! TCTATATATCTATCATTTTT+GGG - chr5_4:8637374-8637393 Msa0835340:intron 15.0%
!!! TCAGTTCATTTTTTTTTTTT+AGG - chr5_4:8637961-8637980 Msa0835340:intron 15.0%
!!! CAGTTCATTTTTTTTTTTTA+GGG - chr5_4:8637962-8637981 Msa0835340:intron 15.0%
!!! AAAAAATTTTTTGGGAATAA+TGG + chr5_4:8638704-8638723 None:intergenic 15.0%
!! TAAATAAACTTTAAATTGTG+TGG - chr5_4:8638760-8638779 Msa0835340:intron 15.0%
!!! GTTTTATTTTTTAATGAAAC+AGG - chr5_4:8639138-8639157 Msa0835340:intron 15.0%
!! ATAAAATTGAAAAACTATGA+CGG - chr5_4:8639231-8639250 Msa0835340:CDS 15.0%
!!! CTCTATATATCTATCATTTT+TGG - chr5_4:8637373-8637392 Msa0835340:intron 20.0%
!! TAGATTAAATGAAGATATGA+TGG - chr5_4:8637465-8637484 Msa0835340:intron 20.0%
!! AAAATATAGCTATACTGTTA+AGG - chr5_4:8637611-8637630 Msa0835340:intron 20.0%
!! AAATATAGCTATACTGTTAA+GGG - chr5_4:8637612-8637631 Msa0835340:intron 20.0%
!!! CAAATCACATTTTCTAATTT+TGG - chr5_4:8637750-8637769 Msa0835340:intron 20.0%
!!! TTTTGGTAAAACATACAAAT+TGG - chr5_4:8637767-8637786 Msa0835340:intron 20.0%
!! TTTGGTAAAACATACAAATT+GGG - chr5_4:8637768-8637787 Msa0835340:intron 20.0%
!!! TCATTATGTTATTTTAAGAG+AGG - chr5_4:8638152-8638171 Msa0835340:intron 20.0%
!! GTTTAATGACAAAAATTCTT+CGG + chr5_4:8638333-8638352 None:intergenic 20.0%
!!! GAACATAAGTTAGTTAATTT+TGG + chr5_4:8638374-8638393 None:intergenic 20.0%
!!! TTCTGATATTTCACATATTT+TGG + chr5_4:8639027-8639046 None:intergenic 20.0%
!! CAATCATGAAAATTCTTAAA+GGG + chr5_4:8640086-8640105 None:intergenic 20.0%
!! ACAATCATGAAAATTCTTAA+AGG + chr5_4:8640087-8640106 None:intergenic 20.0%
!!! TTTTCTAAACATTTTGGATT+TGG - chr5_4:8640113-8640132 Msa0835340:CDS 20.0%
!!! TTTTGTATTCACAATACTAA+GGG + chr5_4:8640281-8640300 None:intergenic 20.0%
!!! TTTTTGTATTCACAATACTA+AGG + chr5_4:8640282-8640301 None:intergenic 20.0%
!!! TTTTAATGATGTGAATGTTT+TGG - chr5_4:8640648-8640667 Msa0835340:exon 20.0%
!! TGGTATAAACATTAAAATGT+AGG + chr5_4:8640758-8640777 None:intergenic 20.0%
! GAAAATGTGATTTGAAAGTT+TGG + chr5_4:8637744-8637763 None:intergenic 25.0%
! TTGGTAAAACATACAAATTG+GGG - chr5_4:8637769-8637788 Msa0835340:intron 25.0%
!! GATTTTATTGTGTTAACCAA+AGG - chr5_4:8637830-8637849 Msa0835340:intron 25.0%
! TGATATAGAAAAAGTTGTGT+AGG - chr5_4:8638007-8638026 Msa0835340:intron 25.0%
! AAATTTAGGTATTCTTGTAC+TGG - chr5_4:8638178-8638197 Msa0835340:intron 25.0%
! TGAGAACAAAGAATAAAACA+AGG - chr5_4:8638254-8638273 Msa0835340:intron 25.0%
!! CATAAGTTAGTTAATTTTGG+TGG + chr5_4:8638371-8638390 None:intergenic 25.0%
!! TGATAAAATAGTCCATCTTT+TGG + chr5_4:8638537-8638556 None:intergenic 25.0%
!! TTACAATTAACTGTCATTTG+AGG + chr5_4:8638875-8638894 None:intergenic 25.0%
! TCAAATGACAGTTAATTGTA+AGG - chr5_4:8638874-8638893 Msa0835340:CDS 25.0%
! TATTGGCAAAATGAAAACAT+AGG + chr5_4:8639100-8639119 None:intergenic 25.0%
! TTTGCCAATATGTTAATTCA+TGG - chr5_4:8639110-8639129 Msa0835340:intron 25.0%
! TTGCCAATATGTTAATTCAT+GGG - chr5_4:8639111-8639130 Msa0835340:intron 25.0%
! GATAGATATTAACAACTCAT+AGG + chr5_4:8639464-8639483 None:intergenic 25.0%
! AAGTTACTGAATACTTTCAT+GGG - chr5_4:8640037-8640056 Msa0835340:CDS 25.0%
!! GAGAGATTTTCTAAACATTT+TGG - chr5_4:8640107-8640126 Msa0835340:CDS 25.0%
! TTTGTATTCACAATACTAAG+GGG + chr5_4:8640280-8640299 None:intergenic 25.0%
! ATTCACATCATTAAAATGTG+TGG + chr5_4:8640644-8640663 None:intergenic 25.0%
! TTTCAATGATTCTAATGTAC+TGG + chr5_4:8640778-8640797 None:intergenic 25.0%
AGAAAAGAGGAAACTTCTTT+CGG + chr5_4:8635734-8635753 None:intergenic 30.0%
GCAAAATTCATGTCTGAATT+TGG + chr5_4:8635806-8635825 None:intergenic 30.0%
ATGTTGAAGCTTGAATTATG+AGG + chr5_4:8635858-8635877 None:intergenic 30.0%
GAAGATGATGAAGATTATGA+TGG + chr5_4:8635883-8635902 None:intergenic 30.0%
!!! ACTTTTTTTGTTCCTTTTGC+TGG + chr5_4:8636173-8636192 None:intergenic 30.0%
ACGGAATTCAGTTTATGATA+CGG + chr5_4:8636461-8636480 None:intergenic 30.0%
GAAGAAAGAAAGTAATTCGA+CGG - chr5_4:8636712-8636731 Msa0835340:CDS 30.0%
TGTTGAAGAAGCTAATGAAA+CGG - chr5_4:8637225-8637244 Msa0835340:CDS 30.0%
! GAAACGAGCTTGATTTTATT+TGG + chr5_4:8637327-8637346 None:intergenic 30.0%
! TTTCTAACACCTTGTTCTTT+TGG + chr5_4:8637535-8637554 None:intergenic 30.0%
! GCTATATTTTGTGACTTCTT+AGG + chr5_4:8637601-8637620 None:intergenic 30.0%
TATAAACTCCAAAAAGGGAA+AGG + chr5_4:8637701-8637720 None:intergenic 30.0%
GCAAGTATAAACTCCAAAAA+GGG + chr5_4:8637706-8637725 None:intergenic 30.0%
AGCAAGTATAAACTCCAAAA+AGG + chr5_4:8637707-8637726 None:intergenic 30.0%
TTCATATTACTAAGGTCCTT+TGG + chr5_4:8637849-8637868 None:intergenic 30.0%
AGTCGAACTTCATATTACTA+AGG + chr5_4:8637857-8637876 None:intergenic 30.0%
GACAAACAATTGTTTCACTT+TGG - chr5_4:8637895-8637914 Msa0835340:intron 30.0%
ATAGAAAAAGTTGTGTAGGA+AGG - chr5_4:8638011-8638030 Msa0835340:intron 30.0%
TAGAAAAAGTTGTGTAGGAA+GGG - chr5_4:8638012-8638031 Msa0835340:intron 30.0%
! TTTAAGAGAGGTGCAAATTT+AGG - chr5_4:8638164-8638183 Msa0835340:intron 30.0%
GTACTGGAAATTTCAAATTG+TGG - chr5_4:8638194-8638213 Msa0835340:intron 30.0%
CTTATGTTCCTTAACAACTT+AGG - chr5_4:8638385-8638404 Msa0835340:intron 30.0%
AGAATGCATAGATGATGATT+TGG + chr5_4:8638502-8638521 None:intergenic 30.0%
TTGATTCTTATATCAGCTGA+GGG - chr5_4:8638631-8638650 Msa0835340:intron 30.0%
TGTGTGGATGTCTAAATATA+TGG - chr5_4:8638776-8638795 Msa0835340:intron 30.0%
GTAACGTGATTTATCAGTTA+AGG + chr5_4:8638839-8638858 None:intergenic 30.0%
TGCCAATATGTTAATTCATG+GGG - chr5_4:8639112-8639131 Msa0835340:intron 30.0%
TTTATCTCTTCCTCTTTAGT+AGG + chr5_4:8639216-8639235 None:intergenic 30.0%
!! TGCTTTAAGAAATCTTTCTG+CGG + chr5_4:8639276-8639295 None:intergenic 30.0%
! CAACTCTTTTGAATGCAAAA+GGG + chr5_4:8639310-8639329 None:intergenic 30.0%
! TCAACTCTTTTGAATGCAAA+AGG + chr5_4:8639311-8639330 None:intergenic 30.0%
TCAAGAGATCAAAGATAACA+AGG + chr5_4:8639423-8639442 None:intergenic 30.0%
ACAGGAAATAGAATGAATGT+TGG - chr5_4:8639553-8639572 Msa0835340:CDS 30.0%
CTGAAACTCGTAGATATAAA+GGG - chr5_4:8639619-8639638 Msa0835340:CDS 30.0%
AAACTCTTCCTCGTTAAATT+TGG + chr5_4:8639752-8639771 None:intergenic 30.0%
GTATTTCAAAAAGAGCTTTG+TGG + chr5_4:8639956-8639975 None:intergenic 30.0%
AGAAGAAATTGTGAGGATTA+AGG - chr5_4:8639981-8640000 Msa0835340:CDS 30.0%
GAAGTTACTGAATACTTTCA+TGG - chr5_4:8640036-8640055 Msa0835340:CDS 30.0%
!!! ACTTTCACTGTTATTTTGAG+AGG + chr5_4:8640315-8640334 None:intergenic 30.0%
TTGCAAATTTGAACTCTCAT+TGG - chr5_4:8640346-8640365 Msa0835340:CDS 30.0%
TGCAAATTTGAACTCTCATT+GGG - chr5_4:8640347-8640366 Msa0835340:CDS 30.0%
! ACTTTTGCTACTAGTGAAAT+GGG + chr5_4:8640379-8640398 None:intergenic 30.0%
AAACATTAAATGCATGTTCG+TGG - chr5_4:8640431-8640450 Msa0835340:CDS 30.0%
!! CTATAGCATACGTATTTTAG+TGG + chr5_4:8640587-8640606 None:intergenic 30.0%
ACGTATGCTATAGTCAAAAT+AGG - chr5_4:8640594-8640613 Msa0835340:CDS 30.0%
!!! AATGTTTTGGTTTACGTAAG+AGG - chr5_4:8640661-8640680 Msa0835340:five_prime_UTR 30.0%
! TGAGGTTTCATGGTGAATTT+TGG + chr5_4:8635840-8635859 None:intergenic 35.0%
GCTTGAATTATGAGGTTTCA+TGG + chr5_4:8635850-8635869 None:intergenic 35.0%
! TCTTCTTGTGTGATGATGAT+CGG + chr5_4:8635955-8635974 None:intergenic 35.0%
ATGGAAGAATGGAATGTTGT+CGG + chr5_4:8636063-8636082 None:intergenic 35.0%
TCTGGATATTCATGGAAGAA+TGG + chr5_4:8636074-8636093 None:intergenic 35.0%
GTTGTAGCGTTAGAAGTTAA+CGG + chr5_4:8636128-8636147 None:intergenic 35.0%
TTCATCAAATTCATCTGCTC+CGG - chr5_4:8636337-8636356 Msa0835340:CDS 35.0%
AGAAAATTCGAAGCTACTAC+CGG + chr5_4:8636359-8636378 None:intergenic 35.0%
! GCTTCGAATTTTCTCTACAT+TGG - chr5_4:8636365-8636384 Msa0835340:CDS 35.0%
! TTTTCTCTACATTGGAACTG+TGG - chr5_4:8636373-8636392 Msa0835340:CDS 35.0%
TCAGTTTATGATACGGTGAA+CGG + chr5_4:8636454-8636473 None:intergenic 35.0%
GAATTACTTTCTTTCTTCGC+CGG + chr5_4:8636710-8636729 None:intergenic 35.0%
GAAAGAGCAGATTTCGATTT+CGG + chr5_4:8636770-8636789 None:intergenic 35.0%
CGAATTCTTCTGCATCTATA+AGG - chr5_4:8637092-8637111 Msa0835340:intron 35.0%
ATTCTTCTGCATCTATAAGG+AGG - chr5_4:8637095-8637114 Msa0835340:intron 35.0%
TCTATAAGGAGGTTAAGTGA+AGG - chr5_4:8637106-8637125 Msa0835340:intron 35.0%
!! TCTGTTGGTAGTGTAAGAAA+AGG - chr5_4:8637136-8637155 Msa0835340:CDS 35.0%
CAATGCAATGCTTTCAACTT+CGG + chr5_4:8637262-8637281 None:intergenic 35.0%
!! GAAGTTGAAAGCATTGCATT+GGG - chr5_4:8637261-8637280 Msa0835340:CDS 35.0%
! GATATGATGGAGTCTTTGTT+TGG - chr5_4:8637478-8637497 Msa0835340:intron 35.0%
! TCTTTGTTTGGTTGCAACAA+TGG - chr5_4:8637490-8637509 Msa0835340:intron 35.0%
!!! ACACCTTGTTCTTTTGGTTT+TGG + chr5_4:8637529-8637548 None:intergenic 35.0%
TTGTTCTCATGATCAACAGA+AGG + chr5_4:8637568-8637587 None:intergenic 35.0%
TTCTGTTGATCATGAGAACA+AGG - chr5_4:8637567-8637586 Msa0835340:intron 35.0%
!!! TGAAGTTTCTGAAGCTCTTT+TGG - chr5_4:8637654-8637673 Msa0835340:intron 35.0%
! ACTTCATTCCTTTCCCTTTT+TGG - chr5_4:8637690-8637709 Msa0835340:intron 35.0%
GTATTAGTCATAGAGAAGCA+TGG - chr5_4:8638041-8638060 Msa0835340:intron 35.0%
ACATGTGTGATGATTCAGTA+TGG - chr5_4:8638098-8638117 Msa0835340:intron 35.0%
GTTCTCAAGTACATTGTATG+AGG + chr5_4:8638241-8638260 None:intergenic 35.0%
GTTCCTTAACAACTTAGGTT+TGG - chr5_4:8638390-8638409 Msa0835340:intron 35.0%
AAGCCAAACCTAAGTTGTTA+AGG + chr5_4:8638396-8638415 None:intergenic 35.0%
GGATATATCATCTGTGATCA+CGG + chr5_4:8638481-8638500 None:intergenic 35.0%
!! CCATCTTTTGGATTAGAACA+TGG + chr5_4:8638525-8638544 None:intergenic 35.0%
CCATGTTCTAATCCAAAAGA+TGG - chr5_4:8638522-8638541 Msa0835340:intron 35.0%
CTCAGCTGATATAAGAATCA+AGG + chr5_4:8638632-8638651 None:intergenic 35.0%
CTTGATTCTTATATCAGCTG+AGG - chr5_4:8638630-8638649 Msa0835340:intron 35.0%
TGATTCTTATATCAGCTGAG+GGG - chr5_4:8638632-8638651 Msa0835340:intron 35.0%
! CAATTAACTGTCATTTGAGG+TGG + chr5_4:8638872-8638891 None:intergenic 35.0%
ATAGGATGCAAATAAGCGAT+TGG + chr5_4:8639082-8639101 None:intergenic 35.0%
GCCAATATGTTAATTCATGG+GGG - chr5_4:8639113-8639132 Msa0835340:intron 35.0%
ACCCCCATGAATTAACATAT+TGG + chr5_4:8639117-8639136 None:intergenic 35.0%
AATATGTTAATTCATGGGGG+TGG - chr5_4:8639116-8639135 Msa0835340:intron 35.0%
ATTGGAAACCCTAGTAAAGA+TGG - chr5_4:8639188-8639207 Msa0835340:CDS 35.0%
AGTTGAAGCTATGCTATACA+GGG - chr5_4:8639325-8639344 Msa0835340:CDS 35.0%
! GTTGATTTCTGAATCGAAGT+TGG + chr5_4:8639351-8639370 None:intergenic 35.0%
GTTGTTAATATCTATCTGCC+AGG - chr5_4:8639468-8639487 Msa0835340:CDS 35.0%
ATGAATGTTGGTACTAATCG+AGG - chr5_4:8639565-8639584 Msa0835340:CDS 35.0%
CCTTTATATCTACGAGTTTC+AGG + chr5_4:8639621-8639640 None:intergenic 35.0%
CCTGAAACTCGTAGATATAA+AGG - chr5_4:8639618-8639637 Msa0835340:CDS 35.0%
GTAGATATAAAGGGAACAGA+TGG - chr5_4:8639628-8639647 Msa0835340:CDS 35.0%
! AATTTGGAGTCCATTTGGTT+GGG + chr5_4:8639736-8639755 None:intergenic 35.0%
! AAATTTGGAGTCCATTTGGT+TGG + chr5_4:8639737-8639756 None:intergenic 35.0%
! CGTTAAATTTGGAGTCCATT+TGG + chr5_4:8639741-8639760 None:intergenic 35.0%
! AATGGACTCCAAATTTAACG+AGG - chr5_4:8639741-8639760 Msa0835340:CDS 35.0%
GAGGAAGAGTTTAAGAAGAA+CGG - chr5_4:8639760-8639779 Msa0835340:CDS 35.0%
!!! CTGCTTTTTTGACATTACCA+AGG + chr5_4:8639816-8639835 None:intergenic 35.0%
CTACGTTACAAAGCTTGAAA+CGG - chr5_4:8639864-8639883 Msa0835340:CDS 35.0%
TACGTTACAAAGCTTGAAAC+GGG - chr5_4:8639865-8639884 Msa0835340:CDS 35.0%
TATGAGAAACCAGATATGAG+AGG - chr5_4:8639916-8639935 Msa0835340:CDS 35.0%
AAGAAATTGCCTCTCATATC+TGG + chr5_4:8639928-8639947 None:intergenic 35.0%
ATTCAGTAACTTCTTTCACG+AGG + chr5_4:8640029-8640048 None:intergenic 35.0%
!! GATTTGGTTTGCAAAGAAGT+TGG - chr5_4:8640129-8640148 Msa0835340:CDS 35.0%
AGGATGCATGATAGAATTGT+TGG - chr5_4:8640153-8640172 Msa0835340:CDS 35.0%
ATGCATGATAGAATTGTTGG+TGG - chr5_4:8640156-8640175 Msa0835340:CDS 35.0%
CTGTTCTTAACAGGTACAAT+GGG - chr5_4:8640220-8640239 Msa0835340:CDS 35.0%
! CACTTTTGCTACTAGTGAAA+TGG + chr5_4:8640380-8640399 None:intergenic 35.0%
TTCACTAGTAGCAAAAGTGA+AGG - chr5_4:8640381-8640400 Msa0835340:CDS 35.0%
!! TTGCTGTTTGATCTCAATGA+AGG + chr5_4:8640411-8640430 None:intergenic 35.0%
ATTAAATGCATGTTCGTGGT+GGG - chr5_4:8640435-8640454 Msa0835340:CDS 35.0%
ATATACCTCCCATTTGAATG+AGG + chr5_4:8640540-8640559 None:intergenic 35.0%
ACAATGGAGAGAGAGAAAAG+AGG + chr5_4:8635747-8635766 None:intergenic 40.0%
TCCTAACGTTACGATTCCAA+CGG + chr5_4:8636210-8636229 None:intergenic 40.0%
CGTAACGTTAGGAATGTTGT+CGG - chr5_4:8636217-8636236 Msa0835340:exon 40.0%
AAGAGAATTGTTCCTCTGTG+TGG + chr5_4:8636312-8636331 None:intergenic 40.0%
TTATGATACGGTGAACGGTT+AGG + chr5_4:8636449-8636468 None:intergenic 40.0%
TTTGGAGGTTTACTTAACGG+CGG + chr5_4:8636530-8636549 None:intergenic 40.0%
CCGTTTGGAGGTTTACTTAA+CGG + chr5_4:8636533-8636552 None:intergenic 40.0%
CCGTTAAGTAAACCTCCAAA+CGG - chr5_4:8636530-8636549 Msa0835340:CDS 40.0%
! CGTTTCGTTACTTTCTTCGT+CGG + chr5_4:8636591-8636610 None:intergenic 40.0%
CGACGAAGAAAGTAACGAAA+CGG - chr5_4:8636589-8636608 Msa0835340:CDS 40.0%
TGACTTACCGAAGAATTCTG+CGG + chr5_4:8636626-8636645 None:intergenic 40.0%
! GTTCTTTTCGATTTCGGAAG+CGG + chr5_4:8636743-8636762 None:intergenic 40.0%
! GGCGAAGTTCTTTTCGATTT+CGG + chr5_4:8636749-8636768 None:intergenic 40.0%
! ATGATGACGTGTCGAATATC+AGG + chr5_4:8636803-8636822 None:intergenic 40.0%
TCTTGAATGTCCTACTCCAT+CGG + chr5_4:8636888-8636907 None:intergenic 40.0%
GATTGAAGATGCGCCAAATT+CGG + chr5_4:8636941-8636960 None:intergenic 40.0%
!! ACTGATTTTCGTGTCATTGG+AGG + chr5_4:8637052-8637071 None:intergenic 40.0%
!!! GACACTGATTTTCGTGTCAT+TGG + chr5_4:8637055-8637074 None:intergenic 40.0%
ATAAGGAGGTTAAGTGAAGG+AGG - chr5_4:8637109-8637128 Msa0835340:CDS 40.0%
GAAGAAGCTAATGAAACGGA+AGG - chr5_4:8637229-8637248 Msa0835340:CDS 40.0%
!! CGAAGTTGAAAGCATTGCAT+TGG - chr5_4:8637260-8637279 Msa0835340:CDS 40.0%
GCTCCAAAACCAAAAGAACA+AGG - chr5_4:8637523-8637542 Msa0835340:intron 40.0%
!!! GTTTCTGAAGCTCTTTTGGA+TGG - chr5_4:8637658-8637677 Msa0835340:intron 40.0%
! CATACAAATTGGGGTGTCTA+TGG - chr5_4:8637778-8637797 Msa0835340:intron 40.0%
! TACATTGTATGAGGTGGACT+TGG + chr5_4:8638232-8638251 None:intergenic 40.0%
CTCAAGTACATTGTATGAGG+TGG + chr5_4:8638238-8638257 None:intergenic 40.0%
!!! AGGTTTGGCTTTTTGCTCTA+AGG - chr5_4:8638405-8638424 Msa0835340:intron 40.0%
!!! GGTTTGGCTTTTTGCTCTAA+GGG - chr5_4:8638406-8638425 Msa0835340:intron 40.0%
AGTAGACTGTAAGGGAAGTT+AGG + chr5_4:8638672-8638691 None:intergenic 40.0%
TAACTTCCCTTACAGTCTAC+TGG - chr5_4:8638671-8638690 Msa0835340:intron 40.0%
CAACAACCAGTAGACTGTAA+GGG + chr5_4:8638680-8638699 None:intergenic 40.0%
! TTAACTGTCATTTGAGGTGG+AGG + chr5_4:8638869-8638888 None:intergenic 40.0%
ACATCCAAGTCTAACTGACA+TGG - chr5_4:8638941-8638960 Msa0835340:CDS 40.0%
TTCTCCATGTCAGTTAGACT+TGG + chr5_4:8638948-8638967 None:intergenic 40.0%
! GCAAATAAGCGATTGGTTCA+AGG + chr5_4:8639075-8639094 None:intergenic 40.0%
AGTAGGAGCCATCTTTACTA+GGG + chr5_4:8639199-8639218 None:intergenic 40.0%
TAGTAGGAGCCATCTTTACT+AGG + chr5_4:8639200-8639219 None:intergenic 40.0%
AAAGATGGCTCCTACTAAAG+AGG - chr5_4:8639203-8639222 Msa0835340:CDS 40.0%
GAGTTGAAGCTATGCTATAC+AGG - chr5_4:8639324-8639343 Msa0835340:CDS 40.0%
GAAAGATAGCCATACCTCAA+GGG + chr5_4:8639396-8639415 None:intergenic 40.0%
TGAAAGATAGCCATACCTCA+AGG + chr5_4:8639397-8639416 None:intergenic 40.0%
GTGAGGAATTAAGGAATAGC+CGG - chr5_4:8639497-8639516 Msa0835340:CDS 40.0%
CCAGGAGTTTGAAGAATAAC+CGG + chr5_4:8639519-8639538 None:intergenic 40.0%
TTGTGGTCCAAGAGATCATT+AGG - chr5_4:8639671-8639690 Msa0835340:CDS 40.0%
CTTCAGACCTAATGATCTCT+TGG + chr5_4:8639681-8639700 None:intergenic 40.0%
CAAGAGATCATTAGGTCTGA+AGG - chr5_4:8639679-8639698 Msa0835340:CDS 40.0%
GGTAATGTCAAAAAAGCAGC+AGG - chr5_4:8639817-8639836 Msa0835340:CDS 40.0%
TGTCAAAAAAGCAGCAGGAA+TGG - chr5_4:8639822-8639841 Msa0835340:CDS 40.0%
ACGTTACAAAGCTTGAAACG+GGG - chr5_4:8639866-8639885 Msa0835340:CDS 40.0%
ACGCAGAAGAAGAAATTGTG+AGG - chr5_4:8639974-8639993 Msa0835340:CDS 40.0%
! TGGTTTGCAAAGAAGTTGGA+AGG - chr5_4:8640133-8640152 Msa0835340:CDS 40.0%
TACCTGTTAAGAACAGGCAA+TGG + chr5_4:8640216-8640235 None:intergenic 40.0%
CCATTGTACCTGTTAAGAAC+AGG + chr5_4:8640222-8640241 None:intergenic 40.0%
CCTGTTCTTAACAGGTACAA+TGG - chr5_4:8640219-8640238 Msa0835340:CDS 40.0%
ACAAGATAGAAGCTCAGATG+AGG - chr5_4:8640245-8640264 Msa0835340:CDS 40.0%
CATTAAATGCATGTTCGTGG+TGG - chr5_4:8640434-8640453 Msa0835340:CDS 40.0%
TTAAATGCATGTTCGTGGTG+GGG - chr5_4:8640436-8640455 Msa0835340:CDS 40.0%
CATACAGTTGAACACTTTCC+TGG - chr5_4:8640472-8640491 Msa0835340:CDS 40.0%
ACTTTCCTGGTTCACTCAAA+TGG - chr5_4:8640485-8640504 Msa0835340:CDS 40.0%
CTTTCCTGGTTCACTCAAAT+GGG - chr5_4:8640486-8640505 Msa0835340:CDS 40.0%
TGCCATTGTCCTCATTCAAA+TGG - chr5_4:8640528-8640547 Msa0835340:CDS 40.0%
GCCATTGTCCTCATTCAAAT+GGG - chr5_4:8640529-8640548 Msa0835340:CDS 40.0%
TCCCATTTGAATGAGGACAA+TGG + chr5_4:8640533-8640552 None:intergenic 40.0%
ATTGTCCTCATTCAAATGGG+AGG - chr5_4:8640532-8640551 Msa0835340:CDS 40.0%
AATTCCTCAGCGGGAAACAA+TGG + chr5_4:8635763-8635782 None:intergenic 45.0%
TTCTTCCGTGAATTCCTCAG+CGG + chr5_4:8635773-8635792 None:intergenic 45.0%
TCGCTGGGAATAATGGTTGA+TGG + chr5_4:8635983-8636002 None:intergenic 45.0%
AATGGAATGTTGTCGGAGGA+AGG + chr5_4:8636056-8636075 None:intergenic 45.0%
GAAGAATGGAATGTTGTCGG+AGG + chr5_4:8636060-8636079 None:intergenic 45.0%
! GCTGCTTGATTCTGATTCGA+CGG + chr5_4:8636104-8636123 None:intergenic 45.0%
GTAGCTATAGCAATCTCCGT+TGG - chr5_4:8636191-8636210 Msa0835340:three_prime_UTR 45.0%
TCCGTTGGAATCGTAACGTT+AGG - chr5_4:8636206-8636225 Msa0835340:exon 45.0%
ACACAGAGCAAAAAACGCTG+CGG - chr5_4:8636262-8636281 Msa0835340:CDS 45.0%
TAGTGAGTACTTCCACACAG+AGG - chr5_4:8636297-8636316 Msa0835340:CDS 45.0%
GGTCAACGATCAGAATCAAC+CGG - chr5_4:8636418-8636437 Msa0835340:CDS 45.0%
ATTCCGTTAAGCGATCCGAT+CGG - chr5_4:8636474-8636493 Msa0835340:CDS 45.0%
ATACCGATCGGATCGCTTAA+CGG + chr5_4:8636480-8636499 None:intergenic 45.0%
TCCAAACGGAAACATTCCAC+CGG - chr5_4:8636544-8636563 Msa0835340:CDS 45.0%
TCATTCGCCGCAGAATTCTT+CGG - chr5_4:8636616-8636635 Msa0835340:CDS 45.0%
GCAGAATTCTTCGGTAAGTC+AGG - chr5_4:8636625-8636644 Msa0835340:CDS 45.0%
TCTTCGGTAAGTCAGGAAGA+TGG - chr5_4:8636632-8636651 Msa0835340:CDS 45.0%
ACACGCCGTATTCAGTTTCA+CGG - chr5_4:8636660-8636679 Msa0835340:CDS 45.0%
CTCTGCCGTGAAACTGAATA+CGG + chr5_4:8636668-8636687 None:intergenic 45.0%
TTCTCTCAGTAACGGTAGTC+CGG - chr5_4:8636688-8636707 Msa0835340:CDS 45.0%
! GGAGGAGTTTGCTTGATAGA+AGG + chr5_4:8636827-8636846 None:intergenic 45.0%
AAACAGTTAACCTCCTCCGA+TGG - chr5_4:8636869-8636888 Msa0835340:CDS 45.0%
!! GATTTTCGTGTCATTGGAGG+TGG + chr5_4:8637049-8637068 None:intergenic 45.0%
GCAGAAGAATTCGAAACCAC+CGG + chr5_4:8637085-8637104 None:intergenic 45.0%
TGAGATCTTCTTCTTCCGAG+AGG - chr5_4:8637200-8637219 Msa0835340:intron 45.0%
AGCTTCTTCAACAAGCCTCT+CGG + chr5_4:8637218-8637237 None:intergenic 45.0%
GAAGCTAATGAAACGGAAGG+TGG - chr5_4:8637232-8637251 Msa0835340:CDS 45.0%
! TTCTGATCGTGCTACTGTGT+GGG - chr5_4:8637300-8637319 Msa0835340:CDS 45.0%
!! AGTTGTGTAGGAAGGGCATT+AGG - chr5_4:8638019-8638038 Msa0835340:intron 45.0%
! GTATGAGGTGGACTTGGATT+TGG + chr5_4:8638226-8638245 None:intergenic 45.0%
ATCACGGCTCTCACTAAACT+AGG + chr5_4:8638465-8638484 None:intergenic 45.0%
CCAACAACCAGTAGACTGTA+AGG + chr5_4:8638681-8638700 None:intergenic 45.0%
! CCTTACAGTCTACTGGTTGT+TGG - chr5_4:8638678-8638697 Msa0835340:intron 45.0%
AATGAAACAGGGAGTCCTGA+AGG - chr5_4:8639150-8639169 Msa0835340:intron 45.0%
GGGTTTGGAAAGACTTCTTG+AGG + chr5_4:8639376-8639395 None:intergenic 45.0%
GAAGTCTTTCCAAACCCTTG+AGG - chr5_4:8639379-8639398 Msa0835340:CDS 45.0%
CTTTCCAAACCCTTGAGGTA+TGG - chr5_4:8639384-8639403 Msa0835340:CDS 45.0%
ATAGCCATACCTCAAGGGTT+TGG + chr5_4:8639391-8639410 None:intergenic 45.0%
! TTAATTCCTCACTTGCTGCC+TGG + chr5_4:8639489-8639508 None:intergenic 45.0%
AGGCAGCAAGTGAGGAATTA+AGG - chr5_4:8639488-8639507 Msa0835340:CDS 45.0%
CCGGTTATTCTTCAAACTCC+TGG - chr5_4:8639516-8639535 Msa0835340:CDS 45.0%
GACCACATTGCTACACTTTG+TGG - chr5_4:8639654-8639673 Msa0835340:CDS 45.0%
GACCACAAAGTGTAGCAATG+TGG + chr5_4:8639659-8639678 None:intergenic 45.0%
GCAGAAACTGCATCTGCAAA+CGG - chr5_4:8639703-8639722 Msa0835340:CDS 45.0%
! CGGAAGTATACCCAACCAAA+TGG - chr5_4:8639723-8639742 Msa0835340:CDS 45.0%
!! GAAGAACGGATTGCATGTTG+TGG - chr5_4:8639774-8639793 Msa0835340:CDS 45.0%
GATTAAGGCTCATGAGAGAG+AGG - chr5_4:8639996-8640015 Msa0835340:CDS 45.0%
CTTTCATGGGAATGCTGCAA+AGG - chr5_4:8640050-8640069 Msa0835340:CDS 45.0%
CACCATTGCCTGTTCTTAAC+AGG - chr5_4:8640211-8640230 Msa0835340:CDS 45.0%
!!! TATTTACTTTTAAAAAATTT+GGG + chr5_4:8638746-8638765 None:intergenic 5.0%
!!! TTATTTACTTTTAAAAAATT+TGG + chr5_4:8638747-8638766 None:intergenic 5.0%
GTTTCCCGCTGAGGAATTCA+CGG - chr5_4:8635765-8635784 Msa0835340:three_prime_UTR 50.0%
TCTTCCGTGAATTCCTCAGC+GGG + chr5_4:8635772-8635791 None:intergenic 50.0%
GCTGTACTCGCTGGGAATAA+TGG + chr5_4:8635990-8636009 None:intergenic 50.0%
!! TTGTGGTGGTGGTGGTATGA+CGG + chr5_4:8636033-8636052 None:intergenic 50.0%
ATGTTGTCGGAGGAAGGTTG+TGG + chr5_4:8636050-8636069 None:intergenic 50.0%
GTGGTGCGTCTGGATATTCA+TGG + chr5_4:8636082-8636101 None:intergenic 50.0%
! GCTTGATTCTGATTCGACGG+TGG + chr5_4:8636101-8636120 None:intergenic 50.0%
CGCTACAACAGCGAATCCAA+CGG - chr5_4:8636139-8636158 Msa0835340:three_prime_UTR 50.0%
! TTTGCTGGTTGTGTTGCCGT+TGG + chr5_4:8636158-8636177 None:intergenic 50.0%
ACGGCAACACAACCAGCAAA+AGG - chr5_4:8636158-8636177 Msa0835340:three_prime_UTR 50.0%
GAACTGTGGAACCTTCGAGA+AGG - chr5_4:8636387-8636406 Msa0835340:CDS 50.0%
ACCTTCGAGAAGGTCAACGA+CGG - chr5_4:8636397-8636416 Msa0835340:CDS 50.0%
ATTGGCTGTAACTCCGGACT+CGG + chr5_4:8636506-8636525 None:intergenic 50.0%
GGTTTACTTAACGGCGGCAT+TGG + chr5_4:8636524-8636543 None:intergenic 50.0%
GGTGGAATGTTTCCGTTTGG+AGG + chr5_4:8636545-8636564 None:intergenic 50.0%
CGGCAGAGTTCTCTCAGTAA+CGG - chr5_4:8636680-8636699 Msa0835340:CDS 50.0%
TGTTTCTCCGATAGCTGACG+TGG + chr5_4:8636854-8636873 None:intergenic 50.0%
TTAACCTCCTCCGATGGAGT+AGG - chr5_4:8636875-8636894 Msa0835340:CDS 50.0%
TGAATGTCCTACTCCATCGG+AGG + chr5_4:8636885-8636904 None:intergenic 50.0%
TGAAGATGCGCCAAATTCGG+AGG + chr5_4:8636938-8636957 None:intergenic 50.0%
! TTTCGTGTCATTGGAGGTGG+CGG + chr5_4:8637046-8637065 None:intergenic 50.0%
AAAATCAGTGTCGCCGACAC+CGG - chr5_4:8637063-8637082 Msa0835340:intron 50.0%
GAATTCGAAACCACCGGTGT+CGG + chr5_4:8637079-8637098 None:intergenic 50.0%
AGGAGGTTAAGTGAAGGAGG+TGG - chr5_4:8637112-8637131 Msa0835340:CDS 50.0%
! AGTGAAGGAGGTGGTTCTGT+TGG - chr5_4:8637121-8637140 Msa0835340:CDS 50.0%
! CTTCTGATCGTGCTACTGTG+TGG - chr5_4:8637299-8637318 Msa0835340:CDS 50.0%
TCTGCGGTCCAAGTTTCGAA+AGG + chr5_4:8639260-8639279 None:intergenic 50.0%
!! CTGTTCTGAGAACAGCTTCC+AGG + chr5_4:8639537-8639556 None:intergenic 50.0%
CTGGAAGCTGTTCTCAGAAC+AGG - chr5_4:8639535-8639554 Msa0835340:CDS 50.0%
!! AACGGATTGCATGTTGTGGC+TGG - chr5_4:8639778-8639797 Msa0835340:CDS 50.0%
! GCTGGTCTCAGTAAAGACCT+TGG - chr5_4:8639796-8639815 Msa0835340:CDS 50.0%
GTAGCCCATTTGAGTGAACC+AGG + chr5_4:8640493-8640512 None:intergenic 50.0%
CTCTCCATTGTTTCCCGCTG+AGG - chr5_4:8635756-8635775 Msa0835340:three_prime_UTR 55.0%
TTGTCGGAGGAAGGTTGTGG+TGG + chr5_4:8636047-8636066 None:intergenic 55.0%
ACCGTCGTTGACCTTCTCGA+AGG + chr5_4:8636401-8636420 None:intergenic 55.0%
GGTGAACGGTTAGGCTTCTC+CGG + chr5_4:8636440-8636459 None:intergenic 55.0%
GCCGGTGGAATGTTTCCGTT+TGG + chr5_4:8636548-8636567 None:intergenic 55.0%
TCTTCTTCCGACGACATCGC+CGG + chr5_4:8636566-8636585 None:intergenic 55.0%
TTCTCCGATAGCTGACGTGG+CGG + chr5_4:8636851-8636870 None:intergenic 55.0%
ATGTCCTACTCCATCGGAGG+AGG + chr5_4:8636882-8636901 None:intergenic 55.0%
! GGCGGTGGTGCTGAGAATTT+CGG + chr5_4:8636914-8636933 None:intergenic 55.0%
AGATGCGCCAAATTCGGAGG+TGG + chr5_4:8636935-8636954 None:intergenic 55.0%
AACAGGGAGTCCTGAAGGTC+TGG - chr5_4:8639155-8639174 Msa0835340:intron 55.0%
ACAGGGAGTCCTGAAGGTCT+GGG - chr5_4:8639156-8639175 Msa0835340:intron 55.0%
!! AGGTCTGGGTGCTGAGCTAT+TGG - chr5_4:8639170-8639189 Msa0835340:CDS 55.0%
GACGGCGACCTTTCGAAACT+TGG - chr5_4:8639249-8639268 Msa0835340:CDS 55.0%
TATCTGCCAGGCAGCAAGTG+AGG - chr5_4:8639480-8639499 Msa0835340:CDS 55.0%
!! GTGGTGGTGCTGTACTCGCT+GGG + chr5_4:8635998-8636017 None:intergenic 60.0%
! ATGACGGTGGAGGGTGATGG+TGG + chr5_4:8636017-8636036 None:intergenic 60.0%
GGTATGACGGTGGAGGGTGA+TGG + chr5_4:8636020-8636039 None:intergenic 60.0%
! GGTGGTGGTATGACGGTGGA+GGG + chr5_4:8636026-8636045 None:intergenic 60.0%
!! TGGTGGTGGTATGACGGTGG+AGG + chr5_4:8636027-8636046 None:intergenic 60.0%
!! TGGTGGTGGTGGTATGACGG+TGG + chr5_4:8636030-8636049 None:intergenic 60.0%
!! GAGGAAGGTTGTGGTGGTGG+TGG + chr5_4:8636041-8636060 None:intergenic 60.0%
TCGGAGGAAGGTTGTGGTGG+TGG + chr5_4:8636044-8636063 None:intergenic 60.0%
TGATTCGACGGTGGTGCGTC+TGG + chr5_4:8636092-8636111 None:intergenic 60.0%
! CGGACTCGGTCGATACCGAT+CGG + chr5_4:8636492-8636511 None:intergenic 60.0%
!! CGATCGGTATCGACCGAGTC+CGG - chr5_4:8636490-8636509 Msa0835340:CDS 60.0%
!! GGCGGCATTGGCTGTAACTC+CGG + chr5_4:8636512-8636531 None:intergenic 60.0%
CATTCCACCGGCGATGTCGT+CGG - chr5_4:8636556-8636575 Msa0835340:CDS 60.0%
TCCACCGCCACGTCAGCTAT+CGG - chr5_4:8636844-8636863 Msa0835340:CDS 60.0%
ACCACCGCCACCTCCGAATT+TGG - chr5_4:8636925-8636944 Msa0835340:CDS 60.0%
TGCGCCAAATTCGGAGGTGG+CGG + chr5_4:8636932-8636951 None:intergenic 60.0%
AGCTCAGCACCCAGACCTTC+AGG + chr5_4:8639168-8639187 None:intergenic 60.0%
!! GGTGGTGGTGCTGTACTCGC+TGG + chr5_4:8635999-8636018 None:intergenic 65.0%
!! ACGGTGGAGGGTGATGGTGG+TGG + chr5_4:8636014-8636033 None:intergenic 65.0%
TCTTCCGACGACATCGCCGG+TGG + chr5_4:8636563-8636582 None:intergenic 65.0%
GATAGCTGACGTGGCGGTGG+AGG + chr5_4:8636845-8636864 None:intergenic 65.0%
TCCGATAGCTGACGTGGCGG+TGG + chr5_4:8636848-8636867 None:intergenic 65.0%
! GCCAAATTCGGAGGTGGCGG+TGG + chr5_4:8636929-8636948 None:intergenic 65.0%
!! GGTGGTGGTGGTGGAGTAGG+AGG + chr5_4:8637013-8637032 None:intergenic 65.0%
!! GGTGGTGGTGGTGGTGGAGT+AGG + chr5_4:8637016-8637035 None:intergenic 65.0%
! ATTGGAGGTGGCGGTGGAGG+TGG + chr5_4:8637037-8637056 None:intergenic 65.0%
! GTCATTGGAGGTGGCGGTGG+AGG + chr5_4:8637040-8637059 None:intergenic 65.0%
! CGTGTCATTGGAGGTGGCGG+TGG + chr5_4:8637043-8637062 None:intergenic 65.0%
ATCAGTGTCGCCGACACCGG+TGG - chr5_4:8637066-8637085 Msa0835340:intron 65.0%
!! GGAGGTGGTGGTGGTGGTGG+TGG + chr5_4:8637022-8637041 None:intergenic 70.0%
!! GGTGGAGGTGGTGGTGGTGG+TGG + chr5_4:8637025-8637044 None:intergenic 70.0%
!! GGCGGTGGAGGTGGTGGTGG+TGG + chr5_4:8637028-8637047 None:intergenic 75.0%
! GGTGGCGGTGGAGGTGGTGG+TGG + chr5_4:8637031-8637050 None:intergenic 75.0%
! GGAGGTGGCGGTGGAGGTGG+TGG + chr5_4:8637034-8637053 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 8635685 8640822 8635685 ID=Msa0835340;Name=Msa0835340
chr5_4 mRNA 8635685 8640822 8635685 ID=Msa0835340-mRNA-1;Parent=Msa0835340;Name=Msa0835340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=164|0.75|0.6|1|1|1|5|538|898
chr5_4 exon 8635685 8637017 8635685 ID=Msa0835340-mRNA-1:exon:3821;Parent=Msa0835340-mRNA-1
chr5_4 exon 8637107 8637161 8637107 ID=Msa0835340-mRNA-1:exon:3820;Parent=Msa0835340-mRNA-1
chr5_4 exon 8637212 8637347 8637212 ID=Msa0835340-mRNA-1:exon:3819;Parent=Msa0835340-mRNA-1
chr5_4 exon 8638828 8639039 8638828 ID=Msa0835340-mRNA-1:exon:3818;Parent=Msa0835340-mRNA-1
chr5_4 exon 8639160 8640822 8639160 ID=Msa0835340-mRNA-1:exon:3817;Parent=Msa0835340-mRNA-1
chr5_4 five_prime_UTR 8640659 8640822 8640659 ID=Msa0835340-mRNA-1:five_prime_utr;Parent=Msa0835340-mRNA-1
chr5_4 CDS 8639160 8640658 8639160 ID=Msa0835340-mRNA-1:cds;Parent=Msa0835340-mRNA-1
chr5_4 CDS 8638828 8639039 8638828 ID=Msa0835340-mRNA-1:cds;Parent=Msa0835340-mRNA-1
chr5_4 CDS 8637212 8637347 8637212 ID=Msa0835340-mRNA-1:cds;Parent=Msa0835340-mRNA-1
chr5_4 CDS 8637107 8637161 8637107 ID=Msa0835340-mRNA-1:cds;Parent=Msa0835340-mRNA-1
chr5_4 CDS 8636223 8637017 8636223 ID=Msa0835340-mRNA-1:cds;Parent=Msa0835340-mRNA-1
chr5_4 three_prime_UTR 8635685 8636222 8635685 ID=Msa0835340-mRNA-1:three_prime_utr;Parent=Msa0835340-mRNA-1
Gene Sequence

>Msa0835340

ATGAAACCTCATAATTCAAGCTTCAACATCACCATCATAATCTTCATCATCTTCTTCTTCTTCTCATCACTCTCTGTTAACACTGCAAAACGTTTCAATGAATCCGATCATCATCACACAAGAAGAATTCTCCATCAACCATTATTCCCAGCGAGTACAGCACCACCACCATCACCCTCCACCGTCATACCACCACCACCACAACCTTCCTCCGACAACATTCCATTCTTCCATGAATATCCAGACGCACCACCGTCGAATCAGAATCAAGCAGCACCGTTAACTTCTAACGCTACAACAGCGAATCCAACGGCAACACAACCAGCAAAAGGAACAAAAAAAGTAGCTATAGCAATCTCCGTTGGAATCGTAACGTTAGGAATGTTGTCGGCGTTAGCTTTCTTTTTATACAAACACAGAGCAAAAAACGCTGCGGATACACAGAAGCTAGTGAGTACTTCCACACAGAGGAACAATTCTCTTCAAGATTCATCAAATTCATCTGCTCCGGTAGTAGCTTCGAATTTTCTCTACATTGGAACTGTGGAACCTTCGAGAAGGTCAACGACGGTCAACGATCAGAATCAACCGGAGAAGCCTAACCGTTCACCGTATCATAAACTGAATTCCGTTAAGCGATCCGATCGGTATCGACCGAGTCCGGAGTTACAGCCAATGCCGCCGTTAAGTAAACCTCCAAACGGAAACATTCCACCGGCGATGTCGTCGGAAGAAGATTCCGACGAAGAAAGTAACGAAACGGCGTTTCATTCGCCGCAGAATTCTTCGGTAAGTCAGGAAGATGGATTTTACACGCCGTATTCAGTTTCACGGCAGAGTTCTCTCAGTAACGGTAGTCCGGCGAAGAAAGAAAGTAATTCGACGGTTACACCGCTTCCGAAATCGAAAAGAACTTCGCCGAAATCGAAATCTGCTCTTTCTGCTTCTTCTCCTGATATTCGACACGTCATCATTCCTTCTATCAAGCAAACTCCTCCACCGCCACGTCAGCTATCGGAGAAACAGTTAACCTCCTCCGATGGAGTAGGACATTCAAGAAAACCGAAATTCTCAGCACCACCGCCACCTCCGAATTTGGCGCATCTTCAATCAACAACTAATACATTTTCACACGTGTCTAAAACTTCACATAATCATCATCCTCCTACTCCACCACCACCACCACCACCTCCACCGCCACCTCCAATGACACGAAAATCAGTGTCGCCGACACCGGTGGTTTCGAATTCTTCTGCATCTATAAGGAGGTTAAGTGAAGGAGGTGGTTCTGTTGGTAGTGTAAGAAAAGGTTCAGAATCAGTTTCAGATCACGTTGATGAGAGTTTGAATTTGAGATCTTCTTCTTCCGAGAGGCTTGTTGAAGAAGCTAATGAAACGGAAGGTGGAAAACCGAAGTTGAAAGCATTGCATTGGGACAAAGTTCGTGCAACTTCTGATCGTGCTACTGTGTGGGACCAAATAAAATCAAGCTCGTTTCAATTAAATGAAGATATGATGGAGTCTTTGTTTGGTTGCAACAATGGAACAAATTCAGCTCCAAAACCAAAAGAACAAGGTGTTAGAAAATCAGTTCTTCCTTCTGTTGATCATGAGAACAAGGTGTTAGATCCTAAGAAGTCACAAAATATAGCTATACTGTTAAGGGCACTGAATGTGACAAGAGATGAAGTTTCTGAAGCTCTTTTGGATGGGAGTCCTGAAGGTCTGGGTGCTGAGCTATTGGAAACCCTAGTAAAGATGGCTCCTACTAAAGAGGAAGAGATAAAATTGAAAAACTATGACGGCGACCTTTCGAAACTTGGACCGCAGAAAGATTTCTTAAAGCAGGCCAACTTCGATTCAGAAATCAACTACCTCAAGAAGTCTTTCCAAACCCTTGAGGCAGCAAGTGAGGAATTAAGGAATAGCCGGTTATTCTTCAAACTCCTGGAAGCTGTTCTCAGAACAGGAAATAGAATGAATGTTGGTACTAATCGAGGTGACGCTAAAGCTTTCAAACTCGACACACTCCTGAAACTCGTAGATATAAAGGGAACAGATGGAAAGACCACATTGCTACACTTTGTGGTCCAAGAGATCATTAGGTCTGAAGGTGCAGAAACTGCATCTGCAAACGGAAGTATACCCAACCAAATGGACTCCAAATTTAACGAGGAAGAGTTTAAGAAGAACGGATTGCATGTTGTGGCTGGTCTCAGTAAAGACCTTGGTAATGTCAAAAAAGCAGCAGGAATGGACTCAGATGTCTTAAGCAGCTACGTTACAAAGCTTGAAACGGGGCTTGAAAAAGTGCGATCAGTTTTGCAATATGAGAAACCAGATATGAGAGGCAATTTCTTCAACTCCACAAAGCTCTTTTTGAAATACGCAGAAGAAGAAATTGTGAGGATTAAGGCTCATGAGAGAGAGGCTTTATTCCTCGTGAAAGAAGTTACTGAATACTTTCATGGGAATGCTGCAAAGGAAGAAGCGCACCCTTTAAGAATTTTCATGATTGTGAGAGATTTTCTAAACATTTTGGATTTGGTTTGCAAAGAAGTTGGAAGGATGCATGATAGAATTGTTGGTGGTGCTTCAAGATCATTCAGAATAGCTTCAAATGCACCATTGCCTGTTCTTAACAGGTACAATGGGAGACAAGATAGAAGCTCAGATGAGGAAAGCTCATCCCCTTAG
Protein sequence

>Msa0835340

MKPHNSSFNITIIIFIIFFFFSSLSVNTAKRFNESDHHHTRRILHQPLFPASTAPPPSPSTVIPPPPQPSSDNIPFFHEYPDAPPSNQNQAAPLTSNATTANPTATQPAKGTKKVAIAISVGIVTLGMLSALAFFLYKHRAKNAADTQKLVSTSTQRNNSLQDSSNSSAPVVASNFLYIGTVEPSRRSTTVNDQNQPEKPNRSPYHKLNSVKRSDRYRPSPELQPMPPLSKPPNGNIPPAMSSEEDSDEESNETAFHSPQNSSVSQEDGFYTPYSVSRQSSLSNGSPAKKESNSTVTPLPKSKRTSPKSKSALSASSPDIRHVIIPSIKQTPPPPRQLSEKQLTSSDGVGHSRKPKFSAPPPPPNLAHLQSTTNTFSHVSKTSHNHHPPTPPPPPPPPPPPPMTRKSVSPTPVVSNSSASIRRLSEGGGSVGSVRKGSESVSDHVDESLNLRSSSSERLVEEANETEGGKPKLKALHWDKVRATSDRATVWDQIKSSSFQLNEDMMESLFGCNNGTNSAPKPKEQGVRKSVLPSVDHENKVLDPKKSQNIAILLRALNVTRDEVSEALLDGSPEGLGAELLETLVKMAPTKEEEIKLKNYDGDLSKLGPQKDFLKQANFDSEINYLKKSFQTLEAASEELRNSRLFFKLLEAVLRTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGAETASANGSIPNQMDSKFNEEEFKKNGLHVVAGLSKDLGNVKKAAGMDSDVLSSYVTKLETGLEKVRSVLQYEKPDMRGNFFNSTKLFLKYAEEEIVRIKAHEREALFLVKEVTEYFHGNAAKEEAHPLRIFMIVRDFLNILDLVCKEVGRMHDRIVGGASRSFRIASNAPLPVLNRYNGRQDRSSDEESSSP*