Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173080 | XP_003591201.2 | 95.610 | 615 | 17 | 2 | 1 | 615 | 1 | 605 | 0.0 | 1215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173080 | sp|Q9FT74|RQL1_ARATH | 66.558 | 616 | 179 | 5 | 14 | 613 | 2 | 606 | 0.0 | 825 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173080 | A0A396JRC9 | 95.610 | 615 | 17 | 2 | 1 | 615 | 1 | 605 | 0.0 | 1215 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032510 | Msa0173080 | 0.937281 | 4.472746e-98 | -8.615850e-47 |
| Msa0173080 | Msa1294960 | 0.805046 | 1.612654e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173080 | MtrunA17_Chr1g0192571 | 95.610 | 615 | 17 | 2 | 1 | 615 | 1 | 605 | 0.0 | 1215 |
| Msa0173080 | MtrunA17_Chr2g0277541 | 45.455 | 440 | 211 | 7 | 191 | 615 | 395 | 820 | 1.50e-125 | 398 |
| Msa0173080 | MtrunA17_Chr5g0409101 | 40.225 | 445 | 233 | 10 | 170 | 610 | 60 | 475 | 4.05e-103 | 328 |
| Msa0173080 | MtrunA17_Chr2g0300871 | 42.043 | 421 | 216 | 9 | 200 | 610 | 38 | 440 | 3.82e-102 | 326 |
| Msa0173080 | MtrunA17_Chr3g0108851 | 37.947 | 419 | 221 | 12 | 200 | 610 | 12 | 399 | 2.13e-74 | 255 |
| Msa0173080 | MtrunA17_Chr8g0377041 | 37.260 | 365 | 197 | 10 | 186 | 539 | 253 | 596 | 9.14e-56 | 203 |
| Msa0173080 | MtrunA17_Chr1g0192101 | 40.088 | 227 | 102 | 7 | 200 | 413 | 160 | 365 | 5.25e-37 | 147 |
| Msa0173080 | MtrunA17_Chr1g0192101 | 33.796 | 216 | 122 | 6 | 395 | 610 | 478 | 672 | 4.07e-24 | 107 |
| Msa0173080 | MtrunA17_Chr2g0293631 | 24.324 | 370 | 235 | 12 | 200 | 552 | 515 | 856 | 1.25e-13 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173080 | AT3G05740.1 | 66.558 | 616 | 179 | 5 | 14 | 613 | 2 | 606 | 0.0 | 825 |
| Msa0173080 | AT3G05740.2 | 69.472 | 511 | 142 | 4 | 106 | 613 | 22 | 521 | 0.0 | 721 |
| Msa0173080 | AT1G10930.1 | 44.035 | 461 | 231 | 6 | 168 | 615 | 417 | 863 | 1.97e-124 | 396 |
| Msa0173080 | AT1G31360.8 | 40.275 | 437 | 230 | 10 | 178 | 610 | 66 | 475 | 5.58e-105 | 327 |
| Msa0173080 | AT1G31360.4 | 40.275 | 437 | 230 | 10 | 178 | 610 | 66 | 475 | 5.58e-105 | 327 |
| Msa0173080 | AT1G31360.7 | 40.275 | 437 | 230 | 10 | 178 | 610 | 66 | 475 | 1.69e-104 | 327 |
| Msa0173080 | AT1G31360.5 | 40.275 | 437 | 230 | 10 | 178 | 610 | 66 | 475 | 1.98e-104 | 327 |
| Msa0173080 | AT1G31360.6 | 40.275 | 437 | 230 | 10 | 178 | 610 | 66 | 475 | 1.03e-103 | 328 |
| Msa0173080 | AT1G31360.1 | 40.271 | 442 | 223 | 10 | 178 | 610 | 66 | 475 | 3.82e-103 | 328 |
| Msa0173080 | AT1G31360.3 | 40.275 | 437 | 230 | 10 | 178 | 610 | 100 | 509 | 8.03e-103 | 328 |
| Msa0173080 | AT4G35740.1 | 43.099 | 413 | 216 | 9 | 200 | 610 | 32 | 427 | 2.27e-101 | 324 |
| Msa0173080 | AT1G31360.2 | 41.005 | 378 | 185 | 9 | 242 | 610 | 2 | 350 | 2.64e-88 | 286 |
| Msa0173080 | AT4G35740.2 | 42.151 | 344 | 181 | 8 | 269 | 610 | 7 | 334 | 2.52e-76 | 255 |
| Msa0173080 | AT1G27880.2 | 36.056 | 355 | 203 | 9 | 198 | 547 | 263 | 598 | 2.29e-53 | 196 |
| Msa0173080 | AT1G27880.1 | 36.056 | 355 | 203 | 9 | 198 | 547 | 263 | 598 | 2.33e-53 | 196 |
| Msa0173080 | AT5G27680.5 | 39.381 | 226 | 105 | 6 | 200 | 413 | 34 | 239 | 5.10e-37 | 147 |
| Msa0173080 | AT5G27680.5 | 38.857 | 175 | 93 | 6 | 438 | 610 | 371 | 533 | 2.62e-25 | 111 |
| Msa0173080 | AT5G27680.6 | 39.381 | 226 | 105 | 6 | 200 | 413 | 164 | 369 | 6.61e-37 | 147 |
| Msa0173080 | AT5G27680.1 | 39.381 | 226 | 105 | 6 | 200 | 413 | 164 | 369 | 6.95e-37 | 147 |
| Msa0173080 | AT5G27680.1 | 38.857 | 175 | 93 | 6 | 438 | 610 | 501 | 663 | 2.42e-25 | 112 |
| Msa0173080 | AT5G27680.4 | 39.381 | 226 | 105 | 6 | 200 | 413 | 164 | 369 | 6.95e-37 | 147 |
| Msa0173080 | AT5G27680.4 | 38.857 | 175 | 93 | 6 | 438 | 610 | 501 | 663 | 2.42e-25 | 112 |
| Msa0173080 | AT5G27680.3 | 39.381 | 226 | 105 | 6 | 200 | 413 | 164 | 369 | 6.95e-37 | 147 |
| Msa0173080 | AT5G27680.3 | 38.857 | 175 | 93 | 6 | 438 | 610 | 501 | 663 | 2.42e-25 | 112 |
| Msa0173080 | AT5G27680.2 | 39.381 | 226 | 105 | 6 | 200 | 413 | 164 | 369 | 6.95e-37 | 147 |
| Msa0173080 | AT5G27680.2 | 38.857 | 175 | 93 | 6 | 438 | 610 | 501 | 663 | 2.42e-25 | 112 |
| Msa0173080 | AT3G06480.1 | 23.040 | 421 | 270 | 14 | 158 | 560 | 420 | 804 | 9.01e-12 | 68.9 |
| Msa0173080 | AT2G33730.1 | 24.745 | 392 | 234 | 14 | 182 | 538 | 314 | 679 | 3.97e-11 | 66.6 |
Find 138 sgRNAs with CRISPR-Local
Find 361 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCGGAAACCAATCATTTAT+TGG | 0.185337 | 1_4:+58267839 | Msa0173080:CDS |
| CCCAATAAATGATTGGTTTC+CGG | 0.199025 | 1_4:-58267840 | None:intergenic |
| TCCCTTACTTTCACTCATTC+AGG | 0.226621 | 1_4:+58267498 | Msa0173080:CDS |
| GCCAATGGGGACATGATTTC+CGG | 0.262665 | 1_4:+58269295 | Msa0173080:intron |
| GCAACAGTACTGTGAATTAA+AGG | 0.283775 | 1_4:+58270699 | Msa0173080:CDS |
| CAGAATGCTATAGTATTTCT+TGG | 0.285673 | 1_4:+58271428 | Msa0173080:three_prime_UTR |
| AACTTGTTCCGTTGTTTCTT+AGG | 0.287375 | 1_4:-58266079 | None:intergenic |
| CCGGAAACCAATCATTTATT+GGG | 0.287539 | 1_4:+58267840 | Msa0173080:CDS |
| CGGCCTGATTATCGGGGATT+AGG | 0.296773 | 1_4:+58269315 | Msa0173080:CDS |
| CTTGCTTTCATTCAAAGTTT+TGG | 0.298169 | 1_4:-58271396 | None:intergenic |
| CGCAAGATTGAAAATTGAAT+TGG | 0.302772 | 1_4:+58265603 | Msa0173080:five_prime_UTR |
| TTGGGAAATGTTGTTATCTT+TGG | 0.306162 | 1_4:+58267054 | Msa0173080:CDS |
| AACTCTCAGGGACAACTTGC+AGG | 0.307906 | 1_4:+58267984 | Msa0173080:intron |
| ATAACACTTAACCTCAAGTT+TGG | 0.310775 | 1_4:+58267529 | Msa0173080:CDS |
| ATAGGATTGAAGCTACTAAT+TGG | 0.317162 | 1_4:-58271171 | None:intergenic |
| GTATGTGCAACTATTGCTTT+TGG | 0.328466 | 1_4:+58269819 | Msa0173080:CDS |
| GAATGAGAAATGTAAAATAA+AGG | 0.338559 | 1_4:+58269716 | Msa0173080:CDS |
| GGCGCTAGATGATATTGAAT+TGG | 0.341103 | 1_4:+58267035 | Msa0173080:CDS |
| AAAAGGTCCATTGAGATGTT+TGG | 0.351374 | 1_4:-58271223 | None:intergenic |
| AAACGGCCAAGGATATAAAA+AGG | 0.351546 | 1_4:+58270639 | Msa0173080:CDS |
| AGCTGTCCAAGCTGCTTTAG+TGG | 0.354506 | 1_4:-58269612 | None:intergenic |
| ATTCTAATTACCTCACGAAC+TGG | 0.355721 | 1_4:-58269399 | None:intergenic |
| ATCACTTCATACTTCAAATT+CGG | 0.357543 | 1_4:-58269573 | None:intergenic |
| GAAGCAACAACAACACGATT+TGG | 0.360900 | 1_4:+58265684 | Msa0173080:CDS |
| TTGGAGAACAGCTGCGGCTT+GGG | 0.368836 | 1_4:-58267590 | None:intergenic |
| CATTCAACACGTGTTTGCTT+TGG | 0.371800 | 1_4:+58271110 | Msa0173080:three_prime_UTR |
| TGATTTCCGGCCTGATTATC+GGG | 0.374955 | 1_4:+58269308 | Msa0173080:CDS |
| GAAAGCTATTATCAAGAATC+AGG | 0.385054 | 1_4:+58270532 | Msa0173080:CDS |
| CGGAACAAGTTTGTGGAGTT+GGG | 0.387829 | 1_4:+58266091 | Msa0173080:CDS |
| GATCCTAATCCCCGATAATC+AGG | 0.390569 | 1_4:-58269318 | None:intergenic |
| CTCTACTAAAATCCTTCTTC+TGG | 0.394859 | 1_4:-58270600 | None:intergenic |
| TGGTACAAATTACAAAATCT+AGG | 0.397316 | 1_4:-58271376 | None:intergenic |
| TTAGAATCCCAATAAATGAT+TGG | 0.397742 | 1_4:-58267847 | None:intergenic |
| ATACTAACTTTGATGTTTCA+AGG | 0.400385 | 1_4:+58266134 | Msa0173080:CDS |
| ATGATTTCCGGCCTGATTAT+CGG | 0.407709 | 1_4:+58269307 | Msa0173080:CDS |
| TTGATGAGGCACACTGTGTT+AGG | 0.415168 | 1_4:+58268015 | Msa0173080:CDS |
| ACCATAAAGACAACACAAAA+AGG | 0.416267 | 1_4:-58271240 | None:intergenic |
| ATGGGAAGATGTACACGAAA+TGG | 0.417081 | 1_4:+58265970 | Msa0173080:CDS |
| CTACTGTAACTCCGGGTTGA+AGG | 0.417144 | 1_4:-58267468 | None:intergenic |
| TTTAGTACCACTGAGTTTGT+AGG | 0.417440 | 1_4:-58266166 | None:intergenic |
| GAATGCTGTCACCGCATGAT+AGG | 0.419087 | 1_4:-58271189 | None:intergenic |
| GAGATGTTTGGAACCACGTC+AGG | 0.421298 | 1_4:-58271211 | None:intergenic |
| TGGTTTCCGGCAATTCTCTC+AGG | 0.421787 | 1_4:-58267827 | None:intergenic |
| TCAAGCATGTAAAGCAGCTT+TGG | 0.427504 | 1_4:+58267104 | Msa0173080:CDS |
| ACTCCGGGTTGAAGGGTTGC+TGG | 0.427909 | 1_4:-58267460 | None:intergenic |
| GTGACACCTGAGAGAATTGC+CGG | 0.429060 | 1_4:+58267821 | Msa0173080:CDS |
| ATTCTTATGCCCACTGGTGG+TGG | 0.438985 | 1_4:+58267144 | Msa0173080:CDS |
| TGGCAAATCTCTTTGCTATC+AGG | 0.441663 | 1_4:+58267164 | Msa0173080:CDS |
| ATCCTGAATGAGTGAAAGTA+AGG | 0.442420 | 1_4:-58267500 | None:intergenic |
| GACCGTCTCGTCTCTCTCTA+CGG | 0.444680 | 1_4:+58265781 | Msa0173080:CDS |
| GTGAATCTCGCCTTAGCTCT+TGG | 0.445529 | 1_4:-58267609 | None:intergenic |
| GCAGCTTGGACAGCTACTAA+TGG | 0.445735 | 1_4:+58269620 | Msa0173080:CDS |
| AAATCCTCCTTTGCTGCAAA+AGG | 0.447429 | 1_4:+58266979 | Msa0173080:CDS |
| CTTGGAGAACAGCTGCGGCT+TGG | 0.450143 | 1_4:-58267591 | None:intergenic |
| GGCGCAAGACACGGAGGAAT+GGG | 0.450232 | 1_4:+58265952 | Msa0173080:CDS |
| GATAGAAAGAACTGCAAATA+CGG | 0.451145 | 1_4:+58271013 | Msa0173080:CDS |
| ACGGAACAAGTTTGTGGAGT+TGG | 0.452790 | 1_4:+58266090 | Msa0173080:CDS |
| CATTGCTCTATACCAGAAGA+AGG | 0.455964 | 1_4:+58270588 | Msa0173080:CDS |
| GCGCTAGATGATATTGAATT+GGG | 0.462176 | 1_4:+58267036 | Msa0173080:CDS |
| ATTATTATTCAAGGTGATGA+TGG | 0.462579 | 1_4:+58265869 | Msa0173080:intron |
| GAGTTGCTGTTCAAAAGAAA+TGG | 0.464725 | 1_4:+58269775 | Msa0173080:CDS |
| TCTCAGTTATGAAGAATTGA+AGG | 0.464882 | 1_4:+58267014 | Msa0173080:CDS |
| AAAATAAAGTAGCGCGGGAA+TGG | 0.465302 | 1_4:+58265633 | Msa0173080:exon |
| TATCAAGAATCAGGAAGGGC+TGG | 0.472191 | 1_4:+58270541 | Msa0173080:CDS |
| TACTGTAACTCCGGGTTGAA+GGG | 0.482787 | 1_4:-58267467 | None:intergenic |
| AGCGTATTACCATGCTGGCT+TGG | 0.484130 | 1_4:+58269740 | Msa0173080:CDS |
| CGGCGCAAGACACGGAGGAA+TGG | 0.485105 | 1_4:+58265951 | Msa0173080:CDS |
| GTGCTTGACACGCGCGGTGA+TGG | 0.485473 | 1_4:+58266022 | Msa0173080:CDS |
| ATCAGTTTAGCTCTCGATCT+CGG | 0.488313 | 1_4:+58265727 | Msa0173080:CDS |
| CTTTCCACGTGTTCCTGTCA+TGG | 0.490156 | 1_4:+58269353 | Msa0173080:CDS |
| CAAACACTACTTGAACACTT+TGG | 0.494139 | 1_4:+58270980 | Msa0173080:CDS |
| GAAAAGTTAGAATAGCTCTC+TGG | 0.502597 | 1_4:+58271272 | Msa0173080:three_prime_UTR |
| AGATACAACTACTGTAACTC+CGG | 0.502948 | 1_4:-58267476 | None:intergenic |
| AAGTAGCGCGGGAATGGAAG+TGG | 0.505431 | 1_4:+58265639 | Msa0173080:exon |
| GAAACAACGGAACAAGTTTG+TGG | 0.524272 | 1_4:+58266084 | Msa0173080:CDS |
| GTTGTATGCATGATAAGAAA+CGG | 0.527572 | 1_4:+58270622 | Msa0173080:CDS |
| TATAGAGCAATGCAAACTGC+TGG | 0.530222 | 1_4:-58270577 | None:intergenic |
| GTTCAAGTAGTGTTTGTCTC+CGG | 0.535138 | 1_4:-58270973 | None:intergenic |
| GTGGCGGTCAATGCCATGAC+AGG | 0.535402 | 1_4:-58269366 | None:intergenic |
| AACTGGGTGAGTTGCAGTGG+CGG | 0.535579 | 1_4:-58269382 | None:intergenic |
| CGTGGTTCCAAACATCTCAA+TGG | 0.535830 | 1_4:+58271216 | Msa0173080:three_prime_UTR |
| AAGTGGCATCACTCAGGGCT+CGG | 0.537050 | 1_4:+58266933 | Msa0173080:CDS |
| CAGCTGTTCTCCAAGAGCTA+AGG | 0.539604 | 1_4:+58267599 | Msa0173080:CDS |
| TACTAACTTTGATGTTTCAA+GGG | 0.539715 | 1_4:+58266135 | Msa0173080:CDS |
| TGGTAGAAGTGGCATCACTC+AGG | 0.540653 | 1_4:+58266927 | Msa0173080:CDS |
| CTTTCAAGAACAATTGCATG+TGG | 0.541349 | 1_4:-58269537 | None:intergenic |
| TTGAACAGCAACTCTCTGGC+GGG | 0.542476 | 1_4:-58269766 | None:intergenic |
| GGCGGGCAGCCAAGCCAGCA+TGG | 0.542973 | 1_4:-58269749 | None:intergenic |
| TGAATGTTTAGGATGAATGC+CGG | 0.543032 | 1_4:+58270954 | Msa0173080:intron |
| GAAATGGAATCGCAAGCTGT+TGG | 0.548293 | 1_4:+58265986 | Msa0173080:CDS |
| TCTAAAATGCATGCATCAGA+AGG | 0.553934 | 1_4:+58267865 | Msa0173080:CDS |
| ACGAACTGGGTGAGTTGCAG+TGG | 0.556223 | 1_4:-58269385 | None:intergenic |
| TTTATTCTTATGCCCACTGG+TGG | 0.556990 | 1_4:+58267141 | Msa0173080:CDS |
| CGGTGACAGCATTCCTGACG+TGG | 0.558121 | 1_4:+58271198 | Msa0173080:three_prime_UTR |
| GCTATTATCAAGAATCAGGA+AGG | 0.558903 | 1_4:+58270536 | Msa0173080:CDS |
| TTTGAACAGCAACTCTCTGG+CGG | 0.561773 | 1_4:-58269767 | None:intergenic |
| TAGCAGGTATTCCAAACTTG+AGG | 0.570780 | 1_4:-58267540 | None:intergenic |
| GCCGGAAATCATGTCCCCAT+TGG | 0.571092 | 1_4:-58269296 | None:intergenic |
| TGGAAGTGGGAAACAGTAGC+AGG | 0.572342 | 1_4:+58265653 | Msa0173080:CDS |
| AAGGCAGCGTATTACCATGC+TGG | 0.576504 | 1_4:+58269735 | Msa0173080:CDS |
| AAGAGATTTGCCACCACCAG+TGG | 0.577435 | 1_4:-58267154 | None:intergenic |
| AGACGAGACGGTCAAAACAT+TGG | 0.581676 | 1_4:-58265771 | None:intergenic |
| TTCTAATTACCTCACGAACT+GGG | 0.585727 | 1_4:-58269398 | None:intergenic |
| TACTAATTGGAGCTTCACAT+TGG | 0.587265 | 1_4:-58271158 | None:intergenic |
| AAGGAACCACTAAAGCAGCT+TGG | 0.588455 | 1_4:+58269606 | Msa0173080:CDS |
| GTGTTATAGAATGGTAGAAG+TGG | 0.590785 | 1_4:+58266916 | Msa0173080:intron |
| AAAGAAATGGCACGATGGAG+AGG | 0.599308 | 1_4:+58269788 | Msa0173080:CDS |
| CTTCCAGCAACCCTTCAACC+CGG | 0.599992 | 1_4:+58267457 | Msa0173080:CDS |
| TGAAGTGATTGTTAAGACAA+AGG | 0.602910 | 1_4:+58269587 | Msa0173080:CDS |
| TCCTGAATGAGTGAAAGTAA+GGG | 0.604891 | 1_4:-58267499 | None:intergenic |
| GTCTTGAGACAGTTATCACA+AGG | 0.608540 | 1_4:-58271043 | None:intergenic |
| TTACATGCTTGATGCTGCAG+TGG | 0.613311 | 1_4:-58267093 | None:intergenic |
| CTAATCCCCGATAATCAGGC+CGG | 0.622423 | 1_4:-58269314 | None:intergenic |
| GGTAGAAGTGGCATCACTCA+GGG | 0.624179 | 1_4:+58266928 | Msa0173080:CDS |
| GATTTCCGGCCTGATTATCG+GGG | 0.626285 | 1_4:+58269309 | Msa0173080:CDS |
| TGCAACTCACCCAGTTCGTG+AGG | 0.628045 | 1_4:+58269389 | Msa0173080:CDS |
| GGGTTCTAGTGACGATGAGG+AGG | 0.628459 | 1_4:+58266111 | Msa0173080:CDS |
| GATACAACTACTGTAACTCC+GGG | 0.636084 | 1_4:-58267475 | None:intergenic |
| AGTAGCGCGGGAATGGAAGT+GGG | 0.637797 | 1_4:+58265640 | Msa0173080:exon |
| AATCACGTGCTTGACACGCG+CGG | 0.639782 | 1_4:+58266016 | Msa0173080:CDS |
| TAGCTCTTGGAGAACAGCTG+CGG | 0.652447 | 1_4:-58267596 | None:intergenic |
| TGCATGATAAGAAACGGCCA+AGG | 0.654530 | 1_4:+58270628 | Msa0173080:CDS |
| AGAGATTTGCCACCACCAGT+GGG | 0.661715 | 1_4:-58267153 | None:intergenic |
| ACGGTCAAAACATTGGTTTG+CGG | 0.666254 | 1_4:-58265764 | None:intergenic |
| GTTGGGTTCTAGTGACGATG+AGG | 0.673093 | 1_4:+58266108 | Msa0173080:CDS |
| CTATTATCAAGAATCAGGAA+GGG | 0.675476 | 1_4:+58270537 | Msa0173080:CDS |
| TACCGTAGAGAGAGACGAGA+CGG | 0.684216 | 1_4:-58265783 | None:intergenic |
| GTAGCTTCAATCCTATCATG+CGG | 0.684431 | 1_4:+58271178 | Msa0173080:three_prime_UTR |
| GGAGTCGGCGCAAGACACGG+AGG | 0.687461 | 1_4:+58265946 | Msa0173080:CDS |
| GTTCAAAAGAAATGGCACGA+TGG | 0.689785 | 1_4:+58269783 | Msa0173080:CDS |
| ACGATTCGCCTAAGAAACAA+CGG | 0.697214 | 1_4:+58266071 | Msa0173080:CDS |
| ATGATACACAAGAATAGACA+AGG | 0.699589 | 1_4:-58267634 | None:intergenic |
| AATGCCATGACAGGAACACG+TGG | 0.700267 | 1_4:-58269357 | None:intergenic |
| TTTATCACTGTTGAACACTG+CGG | 0.701936 | 1_4:+58265899 | Msa0173080:CDS |
| GATCGTTTCAAGAGTCAGTG+TGG | 0.718119 | 1_4:+58269642 | Msa0173080:CDS |
| TCAACATCCTACAAACTCAG+TGG | 0.729434 | 1_4:+58266159 | Msa0173080:CDS |
| ACATACAAAAGCTTGCACGA+AGG | 0.751325 | 1_4:-58267800 | None:intergenic |
| TCTTGAGACAGTTATCACAA+GGG | 0.756422 | 1_4:-58271042 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCATTAGTAATTAAAATTT+TGG | - | chr1_4:58268215-58268234 | None:intergenic | 10.0% |
| !! | TAAATGATACTAATACTAAT+AGG | - | chr1_4:58267695-58267714 | None:intergenic | 15.0% |
| !! | ATTTAAAAAAAAAACCTTTC+AGG | + | chr1_4:58267710-58267729 | Msa0173080:intron | 15.0% |
| !! | TAGTGATATCTTAAAATTAA+AGG | + | chr1_4:58268278-58268297 | Msa0173080:intron | 15.0% |
| !! | ATATCTTAAAATTAAAGGTA+TGG | + | chr1_4:58268283-58268302 | Msa0173080:intron | 15.0% |
| !! | TTCAAAAAGTTATGAAATTT+AGG | - | chr1_4:58268313-58268332 | None:intergenic | 15.0% |
| !!! | TATAAAACATTTTCTTCTTT+AGG | + | chr1_4:58268567-58268586 | Msa0173080:intron | 15.0% |
| !!! | AGTAACACTATAATATTTTA+TGG | - | chr1_4:58268940-58268959 | None:intergenic | 15.0% |
| !!! | TAGTAAATTGCTATTATATA+TGG | + | chr1_4:58269421-58269440 | Msa0173080:intron | 15.0% |
| !!! | ATTTTTAGTGATGAATTTTA+CGG | + | chr1_4:58270421-58270440 | Msa0173080:intron | 15.0% |
| !! | AATAATTATATGAATCCAAA+TGG | - | chr1_4:58270901-58270920 | None:intergenic | 15.0% |
| !! | TAAGCGATTATTATTATTCA+AGG | + | chr1_4:58265860-58265879 | Msa0173080:intron | 20.0% |
| !!! | ATTCACAAATATTTGAAACT+GGG | - | chr1_4:58266226-58266245 | None:intergenic | 20.0% |
| !!! | TATTCACAAATATTTGAAAC+TGG | - | chr1_4:58266227-58266246 | None:intergenic | 20.0% |
| !!! | TTTACCTTTTGTTATAGAAA+TGG | + | chr1_4:58266530-58266549 | Msa0173080:intron | 20.0% |
| !! | TATTCCATTTCTATAACAAA+AGG | - | chr1_4:58266537-58266556 | None:intergenic | 20.0% |
| !! | AGATAGAGAAGAATATAAAA+TGG | + | chr1_4:58266737-58266756 | Msa0173080:intron | 20.0% |
| !! | TTTGTTTAATCTATTTGCAT+TGG | + | chr1_4:58266827-58266846 | Msa0173080:intron | 20.0% |
| !! | CAAAACAATATAATCATCAT+TGG | - | chr1_4:58267272-58267291 | None:intergenic | 20.0% |
| !! | AAGCACAAAATAAAATTAAC+AGG | - | chr1_4:58267433-58267452 | None:intergenic | 20.0% |
| !!! | TAATTACTAATGAAGTATCA+TGG | + | chr1_4:58268221-58268240 | Msa0173080:intron | 20.0% |
| !! | AAAAGTTATGAAATTTAGGA+AGG | - | chr1_4:58268309-58268328 | None:intergenic | 20.0% |
| !!! | GAAGAAAATGTTTTATATTC+AGG | - | chr1_4:58268564-58268583 | None:intergenic | 20.0% |
| !!! | GTTATCTGAAATTAAGTTAA+GGG | - | chr1_4:58268663-58268682 | None:intergenic | 20.0% |
| !!! | TTCAAATCGTAGAAATTTTT+CGG | + | chr1_4:58268752-58268771 | Msa0173080:intron | 20.0% |
| !! | CTAAATTGTTACCTAAAATT+AGG | + | chr1_4:58268889-58268908 | Msa0173080:intron | 20.0% |
| !!! | ATATTATAGTGTTACTACAA+AGG | + | chr1_4:58268944-58268963 | Msa0173080:intron | 20.0% |
| !! | GAATGAGAAATGTAAAATAA+AGG | + | chr1_4:58269716-58269735 | Msa0173080:CDS | 20.0% |
| !! | TTATAAAGAACATGTATACA+AGG | + | chr1_4:58270121-58270140 | Msa0173080:intron | 20.0% |
| !!! | AAAATTTTGCAAAATTGCAA+AGG | - | chr1_4:58270214-58270233 | None:intergenic | 20.0% |
| !! | AGTTTATTACCATTGAAAAT+GGG | + | chr1_4:58270853-58270872 | Msa0173080:intron | 20.0% |
| !!! | ATTTTTCAGATCTAATTTTG+AGG | + | chr1_4:58271305-58271324 | Msa0173080:three_prime_UTR | 20.0% |
| ! | AGAAAAAAAATAAAGTAGCG+CGG | + | chr1_4:58265627-58265646 | Msa0173080:five_prime_UTR | 25.0% |
| ! | ATTATTATTCAAGGTGATGA+TGG | + | chr1_4:58265869-58265888 | Msa0173080:intron | 25.0% |
| ! | ATACTAACTTTGATGTTTCA+AGG | + | chr1_4:58266134-58266153 | Msa0173080:CDS | 25.0% |
| ! | TACTAACTTTGATGTTTCAA+GGG | + | chr1_4:58266135-58266154 | Msa0173080:CDS | 25.0% |
| ! | CTATGGATGAAAAATTAGTA+TGG | + | chr1_4:58266624-58266643 | Msa0173080:intron | 25.0% |
| ! | TATTCTAATGCTTATATGTC+AGG | + | chr1_4:58266657-58266676 | Msa0173080:intron | 25.0% |
| ! | AAAATGGATGTAAGCATATT+TGG | + | chr1_4:58266753-58266772 | Msa0173080:intron | 25.0% |
| !! | TAACTTGTGAAAAAACTTTC+AGG | + | chr1_4:58266786-58266805 | Msa0173080:intron | 25.0% |
| ! | TGAAATAGTGTGTTATAGAA+TGG | + | chr1_4:58266907-58266926 | Msa0173080:intron | 25.0% |
| !!! | AAAGGAGGATTTTATTTTTC+TGG | - | chr1_4:58266971-58266990 | None:intergenic | 25.0% |
| ! | TCATTGGTATTACTATTAAG+TGG | - | chr1_4:58267256-58267275 | None:intergenic | 25.0% |
| !!! | CAACTTTAGCATTTTTTAGA+AGG | - | chr1_4:58267311-58267330 | None:intergenic | 25.0% |
| ! | TTCTTTGTATCAAACAGTAT+TGG | + | chr1_4:58267366-58267385 | Msa0173080:intron | 25.0% |
| ! | TGAGAATTTAAAAAAGTAGC+AGG | - | chr1_4:58267559-58267578 | None:intergenic | 25.0% |
| ! | TAAATCAATTGTTACCTGAA+AGG | - | chr1_4:58267727-58267746 | None:intergenic | 25.0% |
| ! | TTAGAATCCCAATAAATGAT+TGG | - | chr1_4:58267850-58267869 | None:intergenic | 25.0% |
| !! | TCATAACTTTTTGAACTGAA+TGG | + | chr1_4:58268318-58268337 | Msa0173080:intron | 25.0% |
| !! | ATTTTCATCAATCCAAATCA+CGG | - | chr1_4:58268619-58268638 | None:intergenic | 25.0% |
| !! | TGATTTGGATTGATGAAAAT+AGG | + | chr1_4:58268619-58268638 | Msa0173080:intron | 25.0% |
| !! | CGTTATCTGAAATTAAGTTA+AGG | - | chr1_4:58268664-58268683 | None:intergenic | 25.0% |
| !! | TCAAATCGTAGAAATTTTTC+GGG | + | chr1_4:58268753-58268772 | Msa0173080:intron | 25.0% |
| !! | ATCTTTTTCTTACGTCATTT+TGG | - | chr1_4:58268863-58268882 | None:intergenic | 25.0% |
| ! | TGTTACCTAAAATTAGGTTA+AGG | + | chr1_4:58268895-58268914 | Msa0173080:intron | 25.0% |
| ! | GTTACCTAAAATTAGGTTAA+GGG | + | chr1_4:58268896-58268915 | Msa0173080:intron | 25.0% |
| !! | CAATTTAAGGCAAAGAAAAA+GGG | - | chr1_4:58269481-58269500 | None:intergenic | 25.0% |
| ! | ATCACTTCATACTTCAAATT+CGG | - | chr1_4:58269576-58269595 | None:intergenic | 25.0% |
| !!! | TTTTATGATTGACTTTGTTC+AGG | + | chr1_4:58269920-58269939 | Msa0173080:intron | 25.0% |
| ! | TAGTTAATAAACAAGCTGAA+TGG | + | chr1_4:58269999-58270018 | Msa0173080:intron | 25.0% |
| !! | TGGTCTTTTTATCATTTTGT+AGG | - | chr1_4:58270070-58270089 | None:intergenic | 25.0% |
| !! | AGATTTTGCATTTATACTTG+AGG | - | chr1_4:58270265-58270284 | None:intergenic | 25.0% |
| ! | ACATTCAAATGCTGAATTAA+CGG | - | chr1_4:58270352-58270371 | None:intergenic | 25.0% |
| !!! | TTGATTTTGACATTGTATTG+TGG | - | chr1_4:58270510-58270529 | None:intergenic | 25.0% |
| !! | AACTTTCCTTTTTATATCCT+TGG | - | chr1_4:58270648-58270667 | None:intergenic | 25.0% |
| ! | CAGTTTATTACCATTGAAAA+TGG | + | chr1_4:58270852-58270871 | Msa0173080:intron | 25.0% |
| !! | AATTTTTCACCCATTTTATC+TGG | + | chr1_4:58270929-58270948 | Msa0173080:intron | 25.0% |
| ! | ACATTCAAACCAGATAAAAT+GGG | - | chr1_4:58270941-58270960 | None:intergenic | 25.0% |
| ! | AACATTCAAACCAGATAAAA+TGG | - | chr1_4:58270942-58270961 | None:intergenic | 25.0% |
| !! | TTTATCTGGTTTGAATGTTT+AGG | + | chr1_4:58270943-58270962 | Msa0173080:intron | 25.0% |
| !!! | TTTTACTTTTGTATACTCTG+CGG | - | chr1_4:58271347-58271366 | None:intergenic | 25.0% |
| ! | TGGTACAAATTACAAAATCT+AGG | - | chr1_4:58271379-58271398 | None:intergenic | 25.0% |
| CGCAAGATTGAAAATTGAAT+TGG | + | chr1_4:58265603-58265622 | Msa0173080:five_prime_UTR | 30.0% | |
| GAAAAAAAATAAAGTAGCGC+GGG | + | chr1_4:58265628-58265647 | Msa0173080:five_prime_UTR | 30.0% | |
| GAGTGAAAATGAAAGTGAAA+TGG | - | chr1_4:58265821-58265840 | None:intergenic | 30.0% | |
| ACAATCACATGTATCAGTAT+CGG | + | chr1_4:58266306-58266325 | Msa0173080:intron | 30.0% | |
| CATTTATGTTTCCTCACTTA+AGG | - | chr1_4:58266382-58266401 | None:intergenic | 30.0% | |
| CTTAAGTGAGGAAACATAAA+TGG | + | chr1_4:58266380-58266399 | Msa0173080:intron | 30.0% | |
| ACTTATAGCATCAGTGTTTA+TGG | + | chr1_4:58266566-58266585 | Msa0173080:intron | 30.0% | |
| AATTAAGCTGTTTACCGAAA+CGG | + | chr1_4:58266600-58266619 | Msa0173080:intron | 30.0% | |
| TCTCAGTTATGAAGAATTGA+AGG | + | chr1_4:58267014-58267033 | Msa0173080:CDS | 30.0% | |
| TTGGGAAATGTTGTTATCTT+TGG | + | chr1_4:58267054-58267073 | Msa0173080:CDS | 30.0% | |
| ACGTGCAAAAAGAAAAATCA+GGG | - | chr1_4:58267208-58267227 | None:intergenic | 30.0% | |
| AACGTGCAAAAAGAAAAATC+AGG | - | chr1_4:58267209-58267228 | None:intergenic | 30.0% | |
| ATAACACTTAACCTCAAGTT+TGG | + | chr1_4:58267529-58267548 | Msa0173080:CDS | 30.0% | |
| ATGATACACAAGAATAGACA+AGG | - | chr1_4:58267637-58267656 | None:intergenic | 30.0% | |
| ! | TATTTTCGTGGGAAAGTTAT+AGG | - | chr1_4:58267671-58267690 | None:intergenic | 30.0% |
| !! | TACTAATAGGCTATTTTCGT+GGG | - | chr1_4:58267682-58267701 | None:intergenic | 30.0% |
| !! | ATACTAATAGGCTATTTTCG+TGG | - | chr1_4:58267683-58267702 | None:intergenic | 30.0% |
| !!! | TGTCATTTTGAATTGAACTC+TGG | + | chr1_4:58268252-58268271 | Msa0173080:intron | 30.0% |
| TATAAAGAACAGCATGTGAA+AGG | + | chr1_4:58268365-58268384 | Msa0173080:intron | 30.0% | |
| ATAAAGAACAGCATGTGAAA+GGG | + | chr1_4:58268366-58268385 | Msa0173080:intron | 30.0% | |
| TTATTACAAGAACCGTGATT+TGG | + | chr1_4:58268604-58268623 | Msa0173080:intron | 30.0% | |
| AATAGGCAAAATTACTTCTG+TGG | + | chr1_4:58268636-58268655 | Msa0173080:intron | 30.0% | |
| CTTAATTTCAGATAACGATG+TGG | + | chr1_4:58268667-58268686 | Msa0173080:intron | 30.0% | |
| !!! | TTTTTTACTTCCCGTCATAT+TGG | + | chr1_4:58268695-58268714 | Msa0173080:intron | 30.0% |
| !! | AGCTGGTCTTAAATATGATA+TGG | - | chr1_4:58268779-58268798 | None:intergenic | 30.0% |
| TTGAAATCCATATCCAAACA+TGG | + | chr1_4:58268829-58268848 | Msa0173080:intron | 30.0% | |
| TGAAATCCATATCCAAACAT+GGG | + | chr1_4:58268830-58268849 | Msa0173080:intron | 30.0% | |
| ! | GTTAAAGTACCAAGTAGTAA+AGG | + | chr1_4:58268980-58268999 | Msa0173080:intron | 30.0% |
| !!! | GGGAATGGAGATTTTATTTT+TGG | + | chr1_4:58269018-58269037 | Msa0173080:intron | 30.0% |
| ! | CCAATTTAAGGCAAAGAAAA+AGG | - | chr1_4:58269482-58269501 | None:intergenic | 30.0% |
| ! | CCTTTTTCTTTGCCTTAAAT+TGG | + | chr1_4:58269479-58269498 | Msa0173080:intron | 30.0% |
| CCTGAAACAAATCCAATTTA+AGG | - | chr1_4:58269494-58269513 | None:intergenic | 30.0% | |
| ! | CCTTAAATTGGATTTGTTTC+AGG | + | chr1_4:58269491-58269510 | Msa0173080:intron | 30.0% |
| TGAAGTGATTGTTAAGACAA+AGG | + | chr1_4:58269587-58269606 | Msa0173080:CDS | 30.0% | |
| GCATAATTTCTTTCATAGTG+TGG | - | chr1_4:58269950-58269969 | None:intergenic | 30.0% | |
| ACGGGATAATTTACAAAGAA+GGG | - | chr1_4:58269972-58269991 | None:intergenic | 30.0% | |
| TACGGGATAATTTACAAAGA+AGG | - | chr1_4:58269973-58269992 | None:intergenic | 30.0% | |
| TTTATTAACTATCAGGCTAC+GGG | - | chr1_4:58269990-58270009 | None:intergenic | 30.0% | |
| GTTTATTAACTATCAGGCTA+CGG | - | chr1_4:58269991-58270010 | None:intergenic | 30.0% | |
| ! | CAGCTTGTTTATTAACTATC+AGG | - | chr1_4:58269997-58270016 | None:intergenic | 30.0% |
| CATTCAAATGCTGAATTAAC+GGG | - | chr1_4:58270351-58270370 | None:intergenic | 30.0% | |
| GAAAGCTATTATCAAGAATC+AGG | + | chr1_4:58270532-58270551 | Msa0173080:CDS | 30.0% | |
| CTATTATCAAGAATCAGGAA+GGG | + | chr1_4:58270537-58270556 | Msa0173080:CDS | 30.0% | |
| GTTGTATGCATGATAAGAAA+CGG | + | chr1_4:58270622-58270641 | Msa0173080:CDS | 30.0% | |
| GAGCAGATGTTGAAATTTAA+GGG | - | chr1_4:58270735-58270754 | None:intergenic | 30.0% | |
| AGAGCAGATGTTGAAATTTA+AGG | - | chr1_4:58270736-58270755 | None:intergenic | 30.0% | |
| ! | GACTTTTATCCCATTTTCAA+TGG | - | chr1_4:58270865-58270884 | None:intergenic | 30.0% |
| GATAGAAAGAACTGCAAATA+CGG | + | chr1_4:58271013-58271032 | Msa0173080:CDS | 30.0% | |
| ATAGGATTGAAGCTACTAAT+TGG | - | chr1_4:58271174-58271193 | None:intergenic | 30.0% | |
| ! | ACCTTTTTGTGTTGTCTTTA+TGG | + | chr1_4:58271239-58271258 | Msa0173080:three_prime_UTR | 30.0% |
| ACCATAAAGACAACACAAAA+AGG | - | chr1_4:58271243-58271262 | None:intergenic | 30.0% | |
| ! | AGCTATTCTAACTTTTCAAC+AGG | - | chr1_4:58271269-58271288 | None:intergenic | 30.0% |
| ! | CTTGCTTTCATTCAAAGTTT+TGG | - | chr1_4:58271399-58271418 | None:intergenic | 30.0% |
| CAGAATGCTATAGTATTTCT+TGG | + | chr1_4:58271428-58271447 | Msa0173080:three_prime_UTR | 30.0% | |
| TTTATCACTGTTGAACACTG+CGG | + | chr1_4:58265899-58265918 | Msa0173080:CDS | 35.0% | |
| ! | GATGATTTTCTTGCGGTATT+GGG | + | chr1_4:58265923-58265942 | Msa0173080:CDS | 35.0% |
| ! | ATGATTTTCTTGCGGTATTG+GGG | + | chr1_4:58265924-58265943 | Msa0173080:CDS | 35.0% |
| !! | AACTTGTTCCGTTGTTTCTT+AGG | - | chr1_4:58266082-58266101 | None:intergenic | 35.0% |
| TTTAGTACCACTGAGTTTGT+AGG | - | chr1_4:58266169-58266188 | None:intergenic | 35.0% | |
| TAATTGTGCTTCCTTAAGTG+AGG | + | chr1_4:58266368-58266387 | Msa0173080:intron | 35.0% | |
| AGCTTTCTAGGTATAGCTTA+TGG | + | chr1_4:58266468-58266487 | Msa0173080:intron | 35.0% | |
| ATTAAGCTGTTTACCGAAAC+GGG | + | chr1_4:58266601-58266620 | Msa0173080:intron | 35.0% | |
| ! | GTTAGTTTAATCTCTGTGCA+TGG | - | chr1_4:58266694-58266713 | None:intergenic | 35.0% |
| TGCACAGAGATTAAACTAAC+TGG | + | chr1_4:58266694-58266713 | Msa0173080:intron | 35.0% | |
| TGGATGTAAGCATATTTGGA+TGG | + | chr1_4:58266757-58266776 | Msa0173080:intron | 35.0% | |
| CACATTGATACCAGAAAATC+TGG | - | chr1_4:58266853-58266872 | None:intergenic | 35.0% | |
| GTGTTATAGAATGGTAGAAG+TGG | + | chr1_4:58266916-58266935 | Msa0173080:intron | 35.0% | |
| GCGCTAGATGATATTGAATT+GGG | + | chr1_4:58267036-58267055 | Msa0173080:CDS | 35.0% | |
| !!! | AGTTTTATTCTTATGCCCAC+TGG | + | chr1_4:58267138-58267157 | Msa0173080:CDS | 35.0% |
| AGATACAACTACTGTAACTC+CGG | - | chr1_4:58267479-58267498 | None:intergenic | 35.0% | |
| TCCTGAATGAGTGAAAGTAA+GGG | - | chr1_4:58267502-58267521 | None:intergenic | 35.0% | |
| ATCCTGAATGAGTGAAAGTA+AGG | - | chr1_4:58267503-58267522 | None:intergenic | 35.0% | |
| !! | CCCAATAAATGATTGGTTTC+CGG | - | chr1_4:58267843-58267862 | None:intergenic | 35.0% |
| CCGGAAACCAATCATTTATT+GGG | + | chr1_4:58267840-58267859 | Msa0173080:CDS | 35.0% | |
| ! | TCTAAAATGCATGCATCAGA+AGG | + | chr1_4:58267865-58267884 | Msa0173080:CDS | 35.0% |
| AAAGATCTCACGTGCATATT+TGG | + | chr1_4:58267946-58267965 | Msa0173080:intron | 35.0% | |
| !!! | TGATTTTGAGTTCTGACATG+TGG | + | chr1_4:58268423-58268442 | Msa0173080:intron | 35.0% |
| ACATACCAACTACTTCAAAG+AGG | - | chr1_4:58268449-58268468 | None:intergenic | 35.0% | |
| CAAGACATAATACAGACTTC+TGG | - | chr1_4:58268483-58268502 | None:intergenic | 35.0% | |
| ATTATGTCTTGTCTCTGTAC+TGG | + | chr1_4:58268492-58268511 | Msa0173080:intron | 35.0% | |
| TGAGAGAAAGACCAATATGA+CGG | - | chr1_4:58268709-58268728 | None:intergenic | 35.0% | |
| TCACAGGAAAAGAAAACCAT+TGG | + | chr1_4:58268798-58268817 | Msa0173080:intron | 35.0% | |
| GATTTCAAGCTTCAAACCAA+TGG | - | chr1_4:58268817-58268836 | None:intergenic | 35.0% | |
| CTTTAACCCATGTTTGGATA+TGG | - | chr1_4:58268839-58268858 | None:intergenic | 35.0% | |
| ! | TTTGGTCTTTAACCCATGTT+TGG | - | chr1_4:58268845-58268864 | None:intergenic | 35.0% |
| ! | TGGTCCCTTAACCTAATTTT+AGG | - | chr1_4:58268903-58268922 | None:intergenic | 35.0% |
| ! | TGTCAGGCTCTAATTATGTT+GGG | - | chr1_4:58269046-58269065 | None:intergenic | 35.0% |
| TTAGCAATCTCCATCCTAAA+CGG | - | chr1_4:58269211-58269230 | None:intergenic | 35.0% | |
| TTCTAATTACCTCACGAACT+GGG | - | chr1_4:58269401-58269420 | None:intergenic | 35.0% | |
| ATTCTAATTACCTCACGAAC+TGG | - | chr1_4:58269402-58269421 | None:intergenic | 35.0% | |
| CTTTCAAGAACAATTGCATG+TGG | - | chr1_4:58269540-58269559 | None:intergenic | 35.0% | |
| !!! | CGACACATTCACTTTTTGAA+AGG | - | chr1_4:58269680-58269699 | None:intergenic | 35.0% |
| ! | GAGTTGCTGTTCAAAAGAAA+TGG | + | chr1_4:58269775-58269794 | Msa0173080:CDS | 35.0% |
| ! | GTATGTGCAACTATTGCTTT+TGG | + | chr1_4:58269819-58269838 | Msa0173080:CDS | 35.0% |
| !! | TGCAACTATTGCTTTTGGAA+TGG | + | chr1_4:58269824-58269843 | Msa0173080:CDS | 35.0% |
| !!! | GCAACTATTGCTTTTGGAAT+GGG | + | chr1_4:58269825-58269844 | Msa0173080:CDS | 35.0% |
| !!! | CAACTATTGCTTTTGGAATG+GGG | + | chr1_4:58269826-58269845 | Msa0173080:CDS | 35.0% |
| AAACAAGCTGAATGGTCTAT+TGG | + | chr1_4:58270007-58270026 | Msa0173080:intron | 35.0% | |
| TATGTCCACCATAAGTAGAA+AGG | - | chr1_4:58270168-58270187 | None:intergenic | 35.0% | |
| GCATTTAAACACATTGCATG+TGG | - | chr1_4:58270394-58270413 | None:intergenic | 35.0% | |
| GCTATTATCAAGAATCAGGA+AGG | + | chr1_4:58270536-58270555 | Msa0173080:CDS | 35.0% | |
| CTCTACTAAAATCCTTCTTC+TGG | - | chr1_4:58270603-58270622 | None:intergenic | 35.0% | |
| AAACGGCCAAGGATATAAAA+AGG | + | chr1_4:58270639-58270658 | Msa0173080:CDS | 35.0% | |
| !!! | GGAAAGTTTTAAGACAGCAA+TGG | + | chr1_4:58270660-58270679 | Msa0173080:CDS | 35.0% |
| ! | ACAGTACTGTTGCATCTTTT+TGG | - | chr1_4:58270692-58270711 | None:intergenic | 35.0% |
| GCAACAGTACTGTGAATTAA+AGG | + | chr1_4:58270699-58270718 | Msa0173080:CDS | 35.0% | |
| ! | TCAAGTACAAGTTGACCATT+TGG | + | chr1_4:58270883-58270902 | Msa0173080:intron | 35.0% |
| ! | TGAATGTTTAGGATGAATGC+CGG | + | chr1_4:58270954-58270973 | Msa0173080:intron | 35.0% |
| CAAACACTACTTGAACACTT+TGG | + | chr1_4:58270980-58270999 | Msa0173080:CDS | 35.0% | |
| TCTTGAGACAGTTATCACAA+GGG | - | chr1_4:58271045-58271064 | None:intergenic | 35.0% | |
| TACTAATTGGAGCTTCACAT+TGG | - | chr1_4:58271161-58271180 | None:intergenic | 35.0% | |
| AAAAGGTCCATTGAGATGTT+TGG | - | chr1_4:58271226-58271245 | None:intergenic | 35.0% | |
| GAAAAGTTAGAATAGCTCTC+TGG | + | chr1_4:58271272-58271291 | Msa0173080:three_prime_UTR | 35.0% | |
| AAAATAAAGTAGCGCGGGAA+TGG | + | chr1_4:58265633-58265652 | Msa0173080:exon | 40.0% | |
| GAAGCAACAACAACACGATT+TGG | + | chr1_4:58265684-58265703 | Msa0173080:CDS | 40.0% | |
| !! | ATCAGTTTAGCTCTCGATCT+CGG | + | chr1_4:58265727-58265746 | Msa0173080:CDS | 40.0% |
| !! | ACGGTCAAAACATTGGTTTG+CGG | - | chr1_4:58265767-58265786 | None:intergenic | 40.0% |
| ! | CGATGATTTTCTTGCGGTAT+TGG | + | chr1_4:58265922-58265941 | Msa0173080:CDS | 40.0% |
| !! | TGATTTTCTTGCGGTATTGG+GGG | + | chr1_4:58265925-58265944 | Msa0173080:CDS | 40.0% |
| ATGGGAAGATGTACACGAAA+TGG | + | chr1_4:58265970-58265989 | Msa0173080:CDS | 40.0% | |
| ACGATTCGCCTAAGAAACAA+CGG | + | chr1_4:58266071-58266090 | Msa0173080:CDS | 40.0% | |
| GAAACAACGGAACAAGTTTG+TGG | + | chr1_4:58266084-58266103 | Msa0173080:CDS | 40.0% | |
| TCAACATCCTACAAACTCAG+TGG | + | chr1_4:58266159-58266178 | Msa0173080:CDS | 40.0% | |
| ! | AATCTACGAAGCACTAACAC+TGG | + | chr1_4:58266249-58266268 | Msa0173080:intron | 40.0% |
| GTCACAAGTGCTTATGTCAA+TGG | - | chr1_4:58266443-58266462 | None:intergenic | 40.0% | |
| ! | TTGTGACTTGTGAGCTTTCT+AGG | + | chr1_4:58266456-58266475 | Msa0173080:intron | 40.0% |
| ! | TTTTCATCCATAGCCCGTTT+CGG | - | chr1_4:58266617-58266636 | None:intergenic | 40.0% |
| !! | TTTGCATTGGCCAGATTTTC+TGG | + | chr1_4:58266840-58266859 | Msa0173080:intron | 40.0% |
| AAATCCTCCTTTGCTGCAAA+AGG | + | chr1_4:58266979-58266998 | Msa0173080:CDS | 40.0% | |
| ! | ATTTCTGCCTTTTGCAGCAA+AGG | - | chr1_4:58266989-58267008 | None:intergenic | 40.0% |
| GGCGCTAGATGATATTGAAT+TGG | + | chr1_4:58267035-58267054 | Msa0173080:CDS | 40.0% | |
| TCAAGCATGTAAAGCAGCTT+TGG | + | chr1_4:58267104-58267123 | Msa0173080:CDS | 40.0% | |
| TTTATTCTTATGCCCACTGG+TGG | + | chr1_4:58267141-58267160 | Msa0173080:CDS | 40.0% | |
| ! | TGGCAAATCTCTTTGCTATC+AGG | + | chr1_4:58267164-58267183 | Msa0173080:CDS | 40.0% |
| GATACAACTACTGTAACTCC+GGG | - | chr1_4:58267478-58267497 | None:intergenic | 40.0% | |
| TCCCTTACTTTCACTCATTC+AGG | + | chr1_4:58267498-58267517 | Msa0173080:CDS | 40.0% | |
| TAGCAGGTATTCCAAACTTG+AGG | - | chr1_4:58267543-58267562 | None:intergenic | 40.0% | |
| ACATACAAAAGCTTGCACGA+AGG | - | chr1_4:58267803-58267822 | None:intergenic | 40.0% | |
| GCCGGAAACCAATCATTTAT+TGG | + | chr1_4:58267839-58267858 | Msa0173080:CDS | 40.0% | |
| ATCTCACGTGCATATTTGGT+TGG | + | chr1_4:58267950-58267969 | Msa0173080:intron | 40.0% | |
| !!! | TGCAGGTTTTGTTGTTGATG+AGG | + | chr1_4:58268001-58268020 | Msa0173080:CDS | 40.0% |
| ! | ACAACATATCAGAGGCACAT+GGG | - | chr1_4:58268161-58268180 | None:intergenic | 40.0% |
| GTCATGAGACAACATATCAG+AGG | - | chr1_4:58268169-58268188 | None:intergenic | 40.0% | |
| GGTTCGAATGTGAAACAGTA+AGG | + | chr1_4:58268390-58268409 | Msa0173080:intron | 40.0% | |
| GAGAGAAAGACCAATATGAC+GGG | - | chr1_4:58268708-58268727 | None:intergenic | 40.0% | |
| ! | CATATTTAAGACCAGCTCAC+AGG | + | chr1_4:58268782-58268801 | Msa0173080:intron | 40.0% |
| AAATTAGGTTAAGGGACCAC+AGG | + | chr1_4:58268904-58268923 | Msa0173080:intron | 40.0% | |
| TTATGGCTAAACTACTCCTG+TGG | - | chr1_4:58268923-58268942 | None:intergenic | 40.0% | |
| TGAGGTATGCCTTTACTACT+TGG | - | chr1_4:58268992-58269011 | None:intergenic | 40.0% | |
| ! | TAAAGGCATACCTCAACAGT+CGG | + | chr1_4:58268997-58269016 | Msa0173080:intron | 40.0% |
| ! | GTGTCAGGCTCTAATTATGT+TGG | - | chr1_4:58269047-58269066 | None:intergenic | 40.0% |
| ! | TGGTTGAGCAAGATTTTCGT+TGG | + | chr1_4:58269141-58269160 | Msa0173080:intron | 40.0% |
| ! | TAAACGGGTTCAAATCCTAG+TGG | - | chr1_4:58269195-58269214 | None:intergenic | 40.0% |
| ACTAGGATTTGAACCCGTTT+AGG | + | chr1_4:58269194-58269213 | Msa0173080:intron | 40.0% | |
| TAGCAATCTCCATCCTAAAC+GGG | - | chr1_4:58269210-58269229 | None:intergenic | 40.0% | |
| !! | AAACCACGTTTTTCAGCCAA+TGG | + | chr1_4:58269280-58269299 | Msa0173080:intron | 40.0% |
| !! | AACCACGTTTTTCAGCCAAT+GGG | + | chr1_4:58269281-58269300 | Msa0173080:intron | 40.0% |
| ATGATTTCCGGCCTGATTAT+CGG | + | chr1_4:58269307-58269326 | Msa0173080:CDS | 40.0% | |
| ! | TCTTTTGAACAGCAACTCTC+TGG | - | chr1_4:58269773-58269792 | None:intergenic | 40.0% |
| GTTCAAAAGAAATGGCACGA+TGG | + | chr1_4:58269783-58269802 | Msa0173080:CDS | 40.0% | |
| ! | CATTTTGTAGGTCATCAGAC+TGG | - | chr1_4:58270058-58270077 | None:intergenic | 40.0% |
| GCTAGAAAAATGCTACACGA+GGG | - | chr1_4:58270094-58270113 | None:intergenic | 40.0% | |
| AGCTAGAAAAATGCTACACG+AGG | - | chr1_4:58270095-58270114 | None:intergenic | 40.0% | |
| TCTCCAAGCCTTTCTACTTA+TGG | + | chr1_4:58270157-58270176 | Msa0173080:intron | 40.0% | |
| GGAAGATCAACAAGATCTCT+GGG | - | chr1_4:58270244-58270263 | None:intergenic | 40.0% | |
| AGGAAGATCAACAAGATCTC+TGG | - | chr1_4:58270245-58270264 | None:intergenic | 40.0% | |
| TATAGAGCAATGCAAACTGC+TGG | - | chr1_4:58270580-58270599 | None:intergenic | 40.0% | |
| CATTGCTCTATACCAGAAGA+AGG | + | chr1_4:58270588-58270607 | Msa0173080:CDS | 40.0% | |
| GTTCAAGTAGTGTTTGTCTC+CGG | - | chr1_4:58270976-58270995 | None:intergenic | 40.0% | |
| GTCTTGAGACAGTTATCACA+AGG | - | chr1_4:58271046-58271065 | None:intergenic | 40.0% | |
| CATTCAACACGTGTTTGCTT+TGG | + | chr1_4:58271110-58271129 | Msa0173080:three_prime_UTR | 40.0% | |
| GTAGCTTCAATCCTATCATG+CGG | + | chr1_4:58271178-58271197 | Msa0173080:three_prime_UTR | 40.0% | |
| ! | TACTTTTGTATACTCTGCGG+TGG | - | chr1_4:58271344-58271363 | None:intergenic | 40.0% |
| AGACGAGACGGTCAAAACAT+TGG | - | chr1_4:58265774-58265793 | None:intergenic | 45.0% | |
| GAAATGGAATCGCAAGCTGT+TGG | + | chr1_4:58265986-58266005 | Msa0173080:CDS | 45.0% | |
| ACGGAACAAGTTTGTGGAGT+TGG | + | chr1_4:58266090-58266109 | Msa0173080:CDS | 45.0% | |
| CGGAACAAGTTTGTGGAGTT+GGG | + | chr1_4:58266091-58266110 | Msa0173080:CDS | 45.0% | |
| ! | ATCTTTCTAGCACCAACGCT+AGG | - | chr1_4:58266335-58266354 | None:intergenic | 45.0% |
| !! | AGCGTTGGTGCTAGAAAGAT+AGG | + | chr1_4:58266335-58266354 | Msa0173080:intron | 45.0% |
| TTACATGCTTGATGCTGCAG+TGG | - | chr1_4:58267096-58267115 | None:intergenic | 45.0% | |
| ! | TACTGTAACTCCGGGTTGAA+GGG | - | chr1_4:58267470-58267489 | None:intergenic | 45.0% |
| GTTGTCCCTGAGAGTTAAGA+GGG | - | chr1_4:58267980-58267999 | None:intergenic | 45.0% | |
| AGTTGTCCCTGAGAGTTAAG+AGG | - | chr1_4:58267981-58268000 | None:intergenic | 45.0% | |
| TTGATGAGGCACACTGTGTT+AGG | + | chr1_4:58268015-58268034 | Msa0173080:CDS | 45.0% | |
| TGGGAAGAGCTACTTCAAGA+AGG | - | chr1_4:58268142-58268161 | None:intergenic | 45.0% | |
| ! | GACAACATATCAGAGGCACA+TGG | - | chr1_4:58268162-58268181 | None:intergenic | 45.0% |
| AAGAACAGCATGTGAAAGGG+TGG | + | chr1_4:58268369-58268388 | Msa0173080:intron | 45.0% | |
| !! | TGTGGCCTCTTTGAAGTAGT+TGG | + | chr1_4:58268441-58268460 | Msa0173080:intron | 45.0% |
| ! | TCTTGTCTCTGTACTGGTAC+TGG | + | chr1_4:58268498-58268517 | Msa0173080:intron | 45.0% |
| ! | GGTTTTCTTTTCCTGTGAGC+TGG | - | chr1_4:58268796-58268815 | None:intergenic | 45.0% |
| ! | AAAGGCATACCTCAACAGTC+GGG | + | chr1_4:58268998-58269017 | Msa0173080:intron | 45.0% |
| ATTAGAGCCTGACACTCTAG+TGG | + | chr1_4:58269052-58269071 | Msa0173080:intron | 45.0% | |
| TTAGAGCCTGACACTCTAGT+GGG | + | chr1_4:58269053-58269072 | Msa0173080:intron | 45.0% | |
| TTGTCAGCCTCTCTTGATGT+GGG | + | chr1_4:58269164-58269183 | Msa0173080:intron | 45.0% | |
| GGATTTGAACCCGTTTAGGA+TGG | + | chr1_4:58269198-58269217 | Msa0173080:intron | 45.0% | |
| !! | ACCACGTTTTTCAGCCAATG+GGG | + | chr1_4:58269282-58269301 | Msa0173080:intron | 45.0% |
| TGATTTCCGGCCTGATTATC+GGG | + | chr1_4:58269308-58269327 | Msa0173080:CDS | 45.0% | |
| GATCCTAATCCCCGATAATC+AGG | - | chr1_4:58269321-58269340 | None:intergenic | 45.0% | |
| AAGGAACCACTAAAGCAGCT+TGG | + | chr1_4:58269606-58269625 | Msa0173080:CDS | 45.0% | |
| GATCGTTTCAAGAGTCAGTG+TGG | + | chr1_4:58269642-58269661 | Msa0173080:CDS | 45.0% | |
| TTTGAACAGCAACTCTCTGG+CGG | - | chr1_4:58269770-58269789 | None:intergenic | 45.0% | |
| AAAGAAATGGCACGATGGAG+AGG | + | chr1_4:58269788-58269807 | Msa0173080:CDS | 45.0% | |
| TAGGTCATCAGACTGGTAGT+CGG | - | chr1_4:58270051-58270070 | None:intergenic | 45.0% | |
| GAAAAATGCTACACGAGGGT+TGG | - | chr1_4:58270090-58270109 | None:intergenic | 45.0% | |
| CCACCATAAGTAGAAAGGCT+TGG | - | chr1_4:58270163-58270182 | None:intergenic | 45.0% | |
| CCAAGCCTTTCTACTTATGG+TGG | + | chr1_4:58270160-58270179 | Msa0173080:intron | 45.0% | |
| TATCAAGAATCAGGAAGGGC+TGG | + | chr1_4:58270541-58270560 | Msa0173080:CDS | 45.0% | |
| TGCATGATAAGAAACGGCCA+AGG | + | chr1_4:58270628-58270647 | Msa0173080:CDS | 45.0% | |
| CGTGGTTCCAAACATCTCAA+TGG | + | chr1_4:58271216-58271235 | Msa0173080:three_prime_UTR | 45.0% | |
| TGGAAGTGGGAAACAGTAGC+AGG | + | chr1_4:58265653-58265672 | Msa0173080:CDS | 50.0% | |
| TACCGTAGAGAGAGACGAGA+CGG | - | chr1_4:58265786-58265805 | None:intergenic | 50.0% | |
| ! | CTGCGGCGATGATTTTCTTG+CGG | + | chr1_4:58265916-58265935 | Msa0173080:CDS | 50.0% |
| ! | GTTGGGTTCTAGTGACGATG+AGG | + | chr1_4:58266108-58266127 | Msa0173080:CDS | 50.0% |
| !! | CTGTTTACCGAAACGGGCTA+TGG | + | chr1_4:58266607-58266626 | Msa0173080:intron | 50.0% |
| TGGTAGAAGTGGCATCACTC+AGG | + | chr1_4:58266927-58266946 | Msa0173080:CDS | 50.0% | |
| GGTAGAAGTGGCATCACTCA+GGG | + | chr1_4:58266928-58266947 | Msa0173080:CDS | 50.0% | |
| ! | TCTGCCTTTTGCAGCAAAGG+AGG | - | chr1_4:58266986-58267005 | None:intergenic | 50.0% |
| ATTCTTATGCCCACTGGTGG+TGG | + | chr1_4:58267144-58267163 | Msa0173080:CDS | 50.0% | |
| AGAGATTTGCCACCACCAGT+GGG | - | chr1_4:58267156-58267175 | None:intergenic | 50.0% | |
| AAGAGATTTGCCACCACCAG+TGG | - | chr1_4:58267157-58267176 | None:intergenic | 50.0% | |
| ! | CTACTGTAACTCCGGGTTGA+AGG | - | chr1_4:58267471-58267490 | None:intergenic | 50.0% |
| TAGCTCTTGGAGAACAGCTG+CGG | - | chr1_4:58267599-58267618 | None:intergenic | 50.0% | |
| CAGCTGTTCTCCAAGAGCTA+AGG | + | chr1_4:58267599-58267618 | Msa0173080:CDS | 50.0% | |
| ! | GTGAATCTCGCCTTAGCTCT+TGG | - | chr1_4:58267612-58267631 | None:intergenic | 50.0% |
| GTGACACCTGAGAGAATTGC+CGG | + | chr1_4:58267821-58267840 | Msa0173080:CDS | 50.0% | |
| TGGTTTCCGGCAATTCTCTC+AGG | - | chr1_4:58267830-58267849 | None:intergenic | 50.0% | |
| GTGCTCCCTCTTAACTCTCA+GGG | + | chr1_4:58267972-58267991 | Msa0173080:intron | 50.0% | |
| AACTCTCAGGGACAACTTGC+AGG | + | chr1_4:58267984-58268003 | Msa0173080:intron | 50.0% | |
| CATACCTCAACAGTCGGGAA+TGG | + | chr1_4:58269003-58269022 | Msa0173080:intron | 50.0% | |
| ATCTCCATTCCCGACTGTTG+AGG | - | chr1_4:58269010-58269029 | None:intergenic | 50.0% | |
| ! | ACACTCTAGTGGGTCCACAA+TGG | + | chr1_4:58269063-58269082 | Msa0173080:intron | 50.0% |
| AAGCTGTTGGGACACCATTG+TGG | - | chr1_4:58269080-58269099 | None:intergenic | 50.0% | |
| CAATGGTGTCCCAACAGCTT+CGG | + | chr1_4:58269080-58269099 | Msa0173080:intron | 50.0% | |
| GTTGTCAGCCTCTCTTGATG+TGG | + | chr1_4:58269163-58269182 | Msa0173080:intron | 50.0% | |
| TTGATGTGGGTGACTCCACT+AGG | + | chr1_4:58269177-58269196 | Msa0173080:intron | 50.0% | |
| ! | TCCCCATTGGCTGAAAAACG+TGG | - | chr1_4:58269286-58269305 | None:intergenic | 50.0% |
| GCCAATGGGGACATGATTTC+CGG | + | chr1_4:58269295-58269314 | Msa0173080:intron | 50.0% | |
| GATTTCCGGCCTGATTATCG+GGG | + | chr1_4:58269309-58269328 | Msa0173080:CDS | 50.0% | |
| CTAATCCCCGATAATCAGGC+CGG | - | chr1_4:58269317-58269336 | None:intergenic | 50.0% | |
| CTTTCCACGTGTTCCTGTCA+TGG | + | chr1_4:58269353-58269372 | Msa0173080:CDS | 50.0% | |
| AATGCCATGACAGGAACACG+TGG | - | chr1_4:58269360-58269379 | None:intergenic | 50.0% | |
| ! | AGCTGTCCAAGCTGCTTTAG+TGG | - | chr1_4:58269615-58269634 | None:intergenic | 50.0% |
| GCAGCTTGGACAGCTACTAA+TGG | + | chr1_4:58269620-58269639 | Msa0173080:CDS | 50.0% | |
| AAGGCAGCGTATTACCATGC+TGG | + | chr1_4:58269735-58269754 | Msa0173080:CDS | 50.0% | |
| ! | AGCGTATTACCATGCTGGCT+TGG | + | chr1_4:58269740-58269759 | Msa0173080:CDS | 50.0% |
| TTGAACAGCAACTCTCTGGC+GGG | - | chr1_4:58269769-58269788 | None:intergenic | 50.0% | |
| GAATGCTGTCACCGCATGAT+AGG | - | chr1_4:58271192-58271211 | None:intergenic | 50.0% | |
| ! | GAGATGTTTGGAACCACGTC+AGG | - | chr1_4:58271214-58271233 | None:intergenic | 50.0% |
| AAGTAGCGCGGGAATGGAAG+TGG | + | chr1_4:58265639-58265658 | Msa0173080:exon | 55.0% | |
| AGTAGCGCGGGAATGGAAGT+GGG | + | chr1_4:58265640-58265659 | Msa0173080:exon | 55.0% | |
| GACCGTCTCGTCTCTCTCTA+CGG | + | chr1_4:58265781-58265800 | Msa0173080:CDS | 55.0% | |
| ! | TCTTGCGGTATTGGGGGAGT+CGG | + | chr1_4:58265931-58265950 | Msa0173080:CDS | 55.0% |
| AATCACGTGCTTGACACGCG+CGG | + | chr1_4:58266016-58266035 | Msa0173080:CDS | 55.0% | |
| ! | GGGTTCTAGTGACGATGAGG+AGG | + | chr1_4:58266111-58266130 | Msa0173080:CDS | 55.0% |
| AAGTGGCATCACTCAGGGCT+CGG | + | chr1_4:58266933-58266952 | Msa0173080:CDS | 55.0% | |
| CTTCCAGCAACCCTTCAACC+CGG | + | chr1_4:58267457-58267476 | Msa0173080:CDS | 55.0% | |
| TTGGAGAACAGCTGCGGCTT+GGG | - | chr1_4:58267593-58267612 | None:intergenic | 55.0% | |
| GGTGCTCCCTCTTAACTCTC+AGG | + | chr1_4:58267971-58267990 | Msa0173080:intron | 55.0% | |
| ! | TGTGGACCCACTAGAGTGTC+AGG | - | chr1_4:58269062-58269081 | None:intergenic | 55.0% |
| TGTGGGACTGATCCCTGGTT+CGG | + | chr1_4:58269117-58269136 | Msa0173080:intron | 55.0% | |
| TTGCTCAACCAGCCGAACCA+GGG | - | chr1_4:58269132-58269151 | None:intergenic | 55.0% | |
| GGAGTCACCCACATCAAGAG+AGG | - | chr1_4:58269174-58269193 | None:intergenic | 55.0% | |
| GCCGGAAATCATGTCCCCAT+TGG | - | chr1_4:58269299-58269318 | None:intergenic | 55.0% | |
| CGGCCTGATTATCGGGGATT+AGG | + | chr1_4:58269315-58269334 | Msa0173080:CDS | 55.0% | |
| AACTGGGTGAGTTGCAGTGG+CGG | - | chr1_4:58269385-58269404 | None:intergenic | 55.0% | |
| ACGAACTGGGTGAGTTGCAG+TGG | - | chr1_4:58269388-58269407 | None:intergenic | 55.0% | |
| TGCAACTCACCCAGTTCGTG+AGG | + | chr1_4:58269389-58269408 | Msa0173080:CDS | 55.0% | |
| GGCGCAAGACACGGAGGAAT+GGG | + | chr1_4:58265952-58265971 | Msa0173080:CDS | 60.0% | |
| ! | CAGTATCGGACGCCTAGCGT+TGG | + | chr1_4:58266320-58266339 | Msa0173080:intron | 60.0% |
| ! | ACTCCGGGTTGAAGGGTTGC+TGG | - | chr1_4:58267463-58267482 | None:intergenic | 60.0% |
| CTTGGAGAACAGCTGCGGCT+TGG | - | chr1_4:58267594-58267613 | None:intergenic | 60.0% | |
| TCCAGAGGGCCGAAGCTGTT+GGG | - | chr1_4:58269092-58269111 | None:intergenic | 60.0% | |
| AGTCCCACAGTGGCTCCAGA+GGG | - | chr1_4:58269106-58269125 | None:intergenic | 60.0% | |
| ACCAGGGATCAGTCCCACAG+TGG | - | chr1_4:58269116-58269135 | None:intergenic | 60.0% | |
| CTTGCTCAACCAGCCGAACC+AGG | - | chr1_4:58269133-58269152 | None:intergenic | 60.0% | |
| GTGGCGGTCAATGCCATGAC+AGG | - | chr1_4:58269369-58269388 | None:intergenic | 60.0% | |
| CGGTGACAGCATTCCTGACG+TGG | + | chr1_4:58271198-58271217 | Msa0173080:three_prime_UTR | 60.0% | |
| CGGCGCAAGACACGGAGGAA+TGG | + | chr1_4:58265951-58265970 | Msa0173080:CDS | 65.0% | |
| GTGCTTGACACGCGCGGTGA+TGG | + | chr1_4:58266022-58266041 | Msa0173080:CDS | 65.0% | |
| TCCCAACAGCTTCGGCCCTC+TGG | + | chr1_4:58269088-58269107 | Msa0173080:intron | 65.0% | |
| CTCCAGAGGGCCGAAGCTGT+TGG | - | chr1_4:58269093-58269112 | None:intergenic | 65.0% | |
| CAGTCCCACAGTGGCTCCAG+AGG | - | chr1_4:58269107-58269126 | None:intergenic | 65.0% | |
| GCCACTGTGGGACTGATCCC+TGG | + | chr1_4:58269112-58269131 | Msa0173080:intron | 65.0% | |
| !! | GGACTGATCCCTGGTTCGGC+TGG | + | chr1_4:58269121-58269140 | Msa0173080:intron | 65.0% |
| GGGGGAGTCGGCGCAAGACA+CGG | + | chr1_4:58265943-58265962 | Msa0173080:CDS | 70.0% | |
| GGAGTCGGCGCAAGACACGG+AGG | + | chr1_4:58265946-58265965 | Msa0173080:CDS | 70.0% | |
| !! | TCGGCCCTCTGGAGCCACTG+TGG | + | chr1_4:58269099-58269118 | Msa0173080:intron | 70.0% |
| !! | CGGCCCTCTGGAGCCACTGT+GGG | + | chr1_4:58269100-58269119 | Msa0173080:intron | 70.0% |
| GGCGGGCAGCCAAGCCAGCA+TGG | - | chr1_4:58269752-58269771 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58265572 | 58271455 | 58265572 | ID=Msa0173080;Name=Msa0173080 |
| chr1_4 | mRNA | 58265572 | 58271455 | 58265572 | ID=Msa0173080-mRNA-1;Parent=Msa0173080;Name=Msa0173080-mRNA-1;_AED=0.05;_eAED=0.05;_QI=80|0.88|0.8|1|1|1|10|380|615 |
| chr1_4 | exon | 58265572 | 58265802 | 58265572 | ID=Msa0173080-mRNA-1:exon:17931;Parent=Msa0173080-mRNA-1 |
| chr1_4 | exon | 58265882 | 58266180 | 58265882 | ID=Msa0173080-mRNA-1:exon:17932;Parent=Msa0173080-mRNA-1 |
| chr1_4 | exon | 58266925 | 58267185 | 58266925 | ID=Msa0173080-mRNA-1:exon:17933;Parent=Msa0173080-mRNA-1 |
| chr1_4 | exon | 58267457 | 58267647 | 58267457 | ID=Msa0173080-mRNA-1:exon:17934;Parent=Msa0173080-mRNA-1 |
| chr1_4 | exon | 58267790 | 58267886 | 58267790 | ID=Msa0173080-mRNA-1:exon:17935;Parent=Msa0173080-mRNA-1 |
| chr1_4 | exon | 58267993 | 58268036 | 58267993 | ID=Msa0173080-mRNA-1:exon:17936;Parent=Msa0173080-mRNA-1 |
| chr1_4 | exon | 58269296 | 58269410 | 58269296 | ID=Msa0173080-mRNA-1:exon:17937;Parent=Msa0173080-mRNA-1 |
| chr1_4 | exon | 58269513 | 58269866 | 58269513 | ID=Msa0173080-mRNA-1:exon:17938;Parent=Msa0173080-mRNA-1 |
| chr1_4 | exon | 58270496 | 58270720 | 58270496 | ID=Msa0173080-mRNA-1:exon:17939;Parent=Msa0173080-mRNA-1 |
| chr1_4 | exon | 58270965 | 58271455 | 58270965 | ID=Msa0173080-mRNA-1:exon:17940;Parent=Msa0173080-mRNA-1 |
| chr1_4 | five_prime_UTR | 58265572 | 58265651 | 58265572 | ID=Msa0173080-mRNA-1:five_prime_utr;Parent=Msa0173080-mRNA-1 |
| chr1_4 | CDS | 58265652 | 58265802 | 58265652 | ID=Msa0173080-mRNA-1:cds;Parent=Msa0173080-mRNA-1 |
| chr1_4 | CDS | 58265882 | 58266180 | 58265882 | ID=Msa0173080-mRNA-1:cds;Parent=Msa0173080-mRNA-1 |
| chr1_4 | CDS | 58266925 | 58267185 | 58266925 | ID=Msa0173080-mRNA-1:cds;Parent=Msa0173080-mRNA-1 |
| chr1_4 | CDS | 58267457 | 58267647 | 58267457 | ID=Msa0173080-mRNA-1:cds;Parent=Msa0173080-mRNA-1 |
| chr1_4 | CDS | 58267790 | 58267886 | 58267790 | ID=Msa0173080-mRNA-1:cds;Parent=Msa0173080-mRNA-1 |
| chr1_4 | CDS | 58267993 | 58268036 | 58267993 | ID=Msa0173080-mRNA-1:cds;Parent=Msa0173080-mRNA-1 |
| chr1_4 | CDS | 58269296 | 58269410 | 58269296 | ID=Msa0173080-mRNA-1:cds;Parent=Msa0173080-mRNA-1 |
| chr1_4 | CDS | 58269513 | 58269866 | 58269513 | ID=Msa0173080-mRNA-1:cds;Parent=Msa0173080-mRNA-1 |
| chr1_4 | CDS | 58270496 | 58270720 | 58270496 | ID=Msa0173080-mRNA-1:cds;Parent=Msa0173080-mRNA-1 |
| chr1_4 | CDS | 58270965 | 58271075 | 58270965 | ID=Msa0173080-mRNA-1:cds;Parent=Msa0173080-mRNA-1 |
| chr1_4 | three_prime_UTR | 58271076 | 58271455 | 58271076 | ID=Msa0173080-mRNA-1:three_prime_utr;Parent=Msa0173080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
