Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175220 | A0A396JKY1 | 90.106 | 849 | 57 | 5 | 1 | 831 | 1 | 840 | 0.0 | 1479 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0105600 | Msa0175220 | 0.802623 | 5.139479e-49 | -8.615850e-47 |
| Msa0175220 | Msa1452550 | 0.843648 | 1.231241e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175220 | MtrunA17_Chr1g0160911 | 90.106 | 849 | 57 | 5 | 1 | 831 | 1 | 840 | 0.0 | 1479 |
| Msa0175220 | MtrunA17_Chr3g0106931 | 32.620 | 187 | 118 | 4 | 118 | 302 | 580 | 760 | 8.86e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175220 | AT1G23180.1 | 53.952 | 797 | 322 | 9 | 46 | 829 | 68 | 832 | 0.0 | 793 |
| Msa0175220 | AT1G23180.2 | 53.253 | 584 | 234 | 7 | 46 | 617 | 68 | 624 | 0.0 | 568 |
Find 180 sgRNAs with CRISPR-Local
Find 379 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAATGTCTCACCAATTT+TGG | 0.103166 | 1_4:+61085919 | None:intergenic |
| TATAACAAACCTTCTAAATT+TGG | 0.153821 | 1_4:-61084543 | Msa0175220:CDS |
| CTTTAACTGCATCTCTTTAT+TGG | 0.159287 | 1_4:+61083164 | None:intergenic |
| CTTTGCTGCGGAGGGGAATA+TGG | 0.171865 | 1_4:+61082164 | None:intergenic |
| AACTCGAGAAATTCTATAAT+TGG | 0.184777 | 1_4:-61081517 | Msa0175220:three_prime_UTR |
| CCTTGGTCCTTATTTGTAAA+AGG | 0.188169 | 1_4:-61081632 | Msa0175220:three_prime_UTR |
| CAAAATCTCTTGAAAATTTC+GGG | 0.195077 | 1_4:-61082611 | Msa0175220:intron |
| GCAAAATCTCTTGAAAATTT+CGG | 0.195502 | 1_4:-61082612 | Msa0175220:CDS |
| TTGGTTATGTATCTTAGTTT+TGG | 0.224554 | 1_4:-61081585 | Msa0175220:three_prime_UTR |
| GGAAGCTGCAGCGGGTATTT+TGG | 0.228128 | 1_4:-61085998 | Msa0175220:CDS |
| GCAAAAGTCAATGCAATTAT+TGG | 0.230500 | 1_4:-61084465 | Msa0175220:CDS |
| ACGTGGGTTGTATGACTTAT+AGG | 0.253698 | 1_4:+61084614 | None:intergenic |
| GGCGCATCAGAAGTACTTAT+TGG | 0.256084 | 1_4:-61084522 | Msa0175220:CDS |
| AGCAGGTGTTATTCCAAAAT+TGG | 0.260256 | 1_4:-61085932 | Msa0175220:intron |
| GCCTTCTTAGATTCATTAAC+TGG | 0.272768 | 1_4:+61083049 | None:intergenic |
| TTTAACTGCATCTCTTTATT+GGG | 0.277302 | 1_4:+61083165 | None:intergenic |
| TGATTCTACTAGTGGATTCT+TGG | 0.279046 | 1_4:-61081604 | Msa0175220:three_prime_UTR |
| CGCATCTGTTCTTGAGTTTG+TGG | 0.296059 | 1_4:-61082705 | Msa0175220:CDS |
| TTAGTTCCTGTGCCATTAAT+AGG | 0.303101 | 1_4:-61084645 | Msa0175220:CDS |
| ATTTCTGTGGATATTGAAAA+TGG | 0.303359 | 1_4:-61082653 | Msa0175220:CDS |
| CCTGGCAAAGAGAGGGAGTT+TGG | 0.307481 | 1_4:+61087363 | None:intergenic |
| GGAAGGGGCTGTGTATTCTT+TGG | 0.309325 | 1_4:-61081924 | Msa0175220:CDS |
| GGTTGGAGGAAGAGGGTGTT+AGG | 0.316836 | 1_4:+61087461 | None:intergenic |
| CAATAAAGAGATGCAGTTAA+AGG | 0.319321 | 1_4:-61083163 | Msa0175220:intron |
| CTTTCGATTTCTGTGCCATC+TGG | 0.319788 | 1_4:+61084570 | None:intergenic |
| ACTTCATTTGCTCAGGAGTT+TGG | 0.324562 | 1_4:-61081738 | Msa0175220:CDS |
| AACAAGCTATAATTACTCTT+TGG | 0.337922 | 1_4:-61086466 | Msa0175220:CDS |
| TAGGCTGCAGCACCTATTAA+TGG | 0.337954 | 1_4:+61084633 | None:intergenic |
| GTTAAACTAAGTTCTCTATC+TGG | 0.338525 | 1_4:-61082121 | Msa0175220:CDS |
| TATCTTCAATCGACCAATAT+AGG | 0.346902 | 1_4:-61086310 | Msa0175220:CDS |
| GCTGGCAGCGACGCAAGCTT+TGG | 0.349598 | 1_4:-61084154 | Msa0175220:CDS |
| GACAATATAATGCAATTTCC+TGG | 0.354985 | 1_4:-61086413 | Msa0175220:CDS |
| CCAAACTCCCTCTCTTTGCC+AGG | 0.357982 | 1_4:-61087363 | Msa0175220:CDS |
| TGACAGAACAATTCTTCTTA+AGG | 0.360300 | 1_4:+61081784 | None:intergenic |
| AGGAAGAGGGTGTTAGGATT+GGG | 0.360457 | 1_4:+61087467 | None:intergenic |
| TCTGATGCGCCAAATTTAGA+AGG | 0.361169 | 1_4:+61084534 | None:intergenic |
| AGTGTTAAGGTTGGAGGAAG+AGG | 0.366186 | 1_4:+61087453 | None:intergenic |
| CAGGAAATAGATGAAGTAGA+AGG | 0.367189 | 1_4:-61086572 | Msa0175220:CDS |
| TGCGGAGCGTGTCAATGAAA+TGG | 0.369008 | 1_4:+61082200 | None:intergenic |
| TTCCCCTCCGCAGCAAAGAT+TGG | 0.377007 | 1_4:-61082159 | Msa0175220:CDS |
| AATGAATCTAAGAAGGCATT+TGG | 0.382340 | 1_4:-61083043 | Msa0175220:CDS |
| TCAATATCCACAGAAATAAT+CGG | 0.385085 | 1_4:+61082659 | None:intergenic |
| AATACTGTATAATCTTAGTA+TGG | 0.386852 | 1_4:-61081852 | Msa0175220:CDS |
| CCGAACTAGATTCTGCTCTA+AGG | 0.388734 | 1_4:+61086366 | None:intergenic |
| CTGCTACAGAATTCCTATAT+TGG | 0.391475 | 1_4:+61086297 | None:intergenic |
| GAGGAAGAGGGTGTTAGGAT+TGG | 0.392316 | 1_4:+61087466 | None:intergenic |
| AAGCTTGCGTCGCTGCCAGC+TGG | 0.396449 | 1_4:+61084157 | None:intergenic |
| TCTAATGACTTTAGATGCTT+CGG | 0.398255 | 1_4:+61084740 | None:intergenic |
| TTCCACAGGAGCTATTATTT+CGG | 0.403093 | 1_4:-61081945 | Msa0175220:CDS |
| AGCTGGAGCTATTGCGGAAA+AGG | 0.415818 | 1_4:-61083322 | Msa0175220:intron |
| TTGATCTGTTCTACAAGTCT+TGG | 0.426493 | 1_4:+61082043 | None:intergenic |
| TTCATTCTCTTTAGAAGCAC+AGG | 0.426809 | 1_4:-61082017 | Msa0175220:CDS |
| CATTCAGCACTTCTAGCTGC+TGG | 0.435416 | 1_4:-61081818 | Msa0175220:CDS |
| GCCTTGTTTGTTCGTATGCT+AGG | 0.436011 | 1_4:-61086515 | Msa0175220:CDS |
| CTCTTTAGAAGCACAGGAAA+AGG | 0.436036 | 1_4:-61082011 | Msa0175220:CDS |
| TATCAAGTGGATCATGATCT+AGG | 0.436132 | 1_4:+61086492 | None:intergenic |
| TTACAGAATTCTTGTTATTG+AGG | 0.445107 | 1_4:-61084673 | Msa0175220:CDS |
| AGGAAATAGATGAAGTAGAA+GGG | 0.446774 | 1_4:-61086571 | Msa0175220:CDS |
| TTAGATGCTTCGGAGTCATA+TGG | 0.450507 | 1_4:+61084750 | None:intergenic |
| GGGGAATCATCTTCTGACTT+TGG | 0.451107 | 1_4:-61086551 | Msa0175220:CDS |
| ATTTGAGGACAAAGTCTACT+TGG | 0.452312 | 1_4:-61081559 | Msa0175220:three_prime_UTR |
| TTCTTGTAAACTGGCTAAAG+AGG | 0.452634 | 1_4:+61082733 | None:intergenic |
| AGAACAATTCTTCTTAAGGC+TGG | 0.453913 | 1_4:+61081788 | None:intergenic |
| TCGGCTTGTGAGGCAGCTGC+AGG | 0.460226 | 1_4:-61086347 | Msa0175220:CDS |
| GCGGAGCGTGTCAATGAAAT+GGG | 0.462693 | 1_4:+61082201 | None:intergenic |
| AGGAATTCTGTAGCAGATAG+TGG | 0.465149 | 1_4:-61086290 | Msa0175220:CDS |
| ATTGCTGACACAATCTTCCT+TGG | 0.465619 | 1_4:-61086246 | Msa0175220:CDS |
| TTAAAACGCTCAGACGTAGC+TGG | 0.468741 | 1_4:-61083339 | Msa0175220:CDS |
| CTTTGGCAATATTCACTTGG+TGG | 0.469366 | 1_4:-61086449 | Msa0175220:CDS |
| ACATATGCGTATTGCATTCA+AGG | 0.476617 | 1_4:-61084235 | Msa0175220:CDS |
| AAAGGGCACTTCATTTGCTC+AGG | 0.479741 | 1_4:-61081745 | Msa0175220:CDS |
| AAGTAGACTTTGTCCTCAAA+TGG | 0.480683 | 1_4:+61081561 | None:intergenic |
| TCAAGGAGGCTGGTGCAGTT+AGG | 0.484639 | 1_4:-61084218 | Msa0175220:CDS |
| TCGTGTTGGTGCTATTGAAA+TGG | 0.486108 | 1_4:-61084418 | Msa0175220:CDS |
| GTGTTAAGGTTGGAGGAAGA+GGG | 0.486174 | 1_4:+61087454 | None:intergenic |
| CAATGATAATGCAGTCCAGC+TGG | 0.486189 | 1_4:-61084172 | Msa0175220:CDS |
| TCCCCTCCGCAGCAAAGATT+GGG | 0.486285 | 1_4:-61082158 | Msa0175220:CDS |
| CCTTAGAGCAGAATCTAGTT+CGG | 0.486396 | 1_4:-61086366 | Msa0175220:CDS |
| CGCGTCTGACACTCTTGCAT+TGG | 0.486741 | 1_4:-61084356 | Msa0175220:CDS |
| AGAATTCTTGTTATTGAGGA+AGG | 0.486981 | 1_4:-61084669 | Msa0175220:CDS |
| TGCTGCAGATATTGCAAGAC+CGG | 0.487218 | 1_4:+61082282 | None:intergenic |
| TATGTTTAGAAGAACATCCT+TGG | 0.490738 | 1_4:-61081649 | Msa0175220:three_prime_UTR |
| GCGCGAAATGAGAAGTGTTA+AGG | 0.491645 | 1_4:+61087440 | None:intergenic |
| GCATTTGGTGGAGCCGATGA+TGG | 0.492074 | 1_4:-61083028 | Msa0175220:CDS |
| TTTGCTGCGGAGGGGAATAT+GGG | 0.494178 | 1_4:+61082165 | None:intergenic |
| ATTGAAGAAGGTAGTGAAAG+AGG | 0.498186 | 1_4:-61081893 | Msa0175220:CDS |
| TACCCAATCTTTGCTGCGGA+GGG | 0.498761 | 1_4:+61082156 | None:intergenic |
| TTGGAAACATGACGAGTCCA+TGG | 0.503224 | 1_4:-61081719 | Msa0175220:exon |
| CGTATTGCATTCAAGGAGGC+TGG | 0.506096 | 1_4:-61084228 | Msa0175220:CDS |
| CGAGGAAGAGAGAGTGACTC+TGG | 0.507018 | 1_4:+61087393 | None:intergenic |
| AGCATCTAAAGTCATTAGAA+AGG | 0.509035 | 1_4:-61084736 | Msa0175220:CDS |
| TAATTCCTTTGATCCATCAT+CGG | 0.513509 | 1_4:+61083015 | None:intergenic |
| ACTCGTAGTTGCAGCAATAA+CGG | 0.516523 | 1_4:-61087337 | Msa0175220:CDS |
| CAACAATTCCTTGTTCGTGT+TGG | 0.517289 | 1_4:-61084432 | Msa0175220:CDS |
| ATGAGAAGTGTTAAGGTTGG+AGG | 0.518276 | 1_4:+61087447 | None:intergenic |
| AGTGTAACTTCTACGTTGAT+CGG | 0.520501 | 1_4:+61082079 | None:intergenic |
| ACAATCTTCCTTGGCTTCTG+AGG | 0.520554 | 1_4:-61086237 | Msa0175220:intron |
| CTTTCATATCCTCATCATCA+AGG | 0.521881 | 1_4:+61086025 | None:intergenic |
| CTACCCAATCTTTGCTGCGG+AGG | 0.523971 | 1_4:+61082155 | None:intergenic |
| TGTTTAAAGATTCCTTCCCA+TGG | 0.524675 | 1_4:+61081702 | None:intergenic |
| CCATGATGTCATGGTTAACA+TGG | 0.527085 | 1_4:+61085959 | None:intergenic |
| GCTGCAACTACGAGTGAACC+TGG | 0.528924 | 1_4:+61087345 | None:intergenic |
| GAAATAATCGGACTCAGTGT+TGG | 0.530686 | 1_4:+61082671 | None:intergenic |
| ACTCTTTGGCAATATTCACT+TGG | 0.531474 | 1_4:-61086452 | Msa0175220:CDS |
| CATGACATCATGGTTGAAGC+AGG | 0.531883 | 1_4:-61085949 | Msa0175220:CDS |
| ATTCAGCACTTCTAGCTGCT+GGG | 0.532272 | 1_4:-61081817 | Msa0175220:CDS |
| GAACAATTCTTCTTAAGGCT+GGG | 0.533123 | 1_4:+61081789 | None:intergenic |
| TTGGTGAAGCTGATTGAAGA+AGG | 0.533346 | 1_4:-61081905 | Msa0175220:CDS |
| ATAGCTTGTTCTCTATCAAG+TGG | 0.535682 | 1_4:+61086479 | None:intergenic |
| CACCCTCGGTTTCAATCACT+CGG | 0.536142 | 1_4:+61083385 | None:intergenic |
| ACACTCTTGCATTGGATCGA+CGG | 0.536563 | 1_4:-61084348 | Msa0175220:CDS |
| ACAGGAGCTATTATTTCGGA+AGG | 0.538014 | 1_4:-61081941 | Msa0175220:CDS |
| CTTTGGAAAAGCTGTCTGCT+AGG | 0.538845 | 1_4:-61084137 | Msa0175220:intron |
| AGGAGCTATTATTTCGGAAG+GGG | 0.539631 | 1_4:-61081939 | Msa0175220:CDS |
| ACCAGTTAATGAATCTAAGA+AGG | 0.539869 | 1_4:-61083050 | Msa0175220:CDS |
| GTGCAGTTAGGCATTTAGTA+CGG | 0.544923 | 1_4:-61084206 | Msa0175220:CDS |
| ATAATTGGTTATTAATGATG+AGG | 0.546140 | 1_4:-61081502 | Msa0175220:three_prime_UTR |
| GAATCTAAGAAGGCATTTGG+TGG | 0.547826 | 1_4:-61083040 | Msa0175220:CDS |
| TCTGTGCCATCTGGAAATGC+AGG | 0.548785 | 1_4:+61084579 | None:intergenic |
| CTTAGTAGAATAGTATCTGA+AGG | 0.555239 | 1_4:-61081977 | Msa0175220:CDS |
| GGAAATAGATGAAGTAGAAG+GGG | 0.555447 | 1_4:-61086570 | Msa0175220:CDS |
| TTCCTATACCTCAGAAGCCA+AGG | 0.555612 | 1_4:+61086229 | None:intergenic |
| AGGGAGTTTGGAAGAGTACG+AGG | 0.555664 | 1_4:+61087375 | None:intergenic |
| GAAGGGGTGGTAGATTCCAC+AGG | 0.559231 | 1_4:-61081959 | Msa0175220:CDS |
| AGAATCTAGTTCGGCTTGTG+AGG | 0.559361 | 1_4:-61086357 | Msa0175220:CDS |
| ATAGAGAACTTAGTTTAACT+AGG | 0.573283 | 1_4:+61082125 | None:intergenic |
| TAGAATAGTATCTGAAGGGG+TGG | 0.574461 | 1_4:-61081972 | Msa0175220:CDS |
| ACTGAGTCCGATTATTTCTG+TGG | 0.577062 | 1_4:-61082666 | Msa0175220:CDS |
| ATATGCTATTGAACTTGAAG+AGG | 0.580089 | 1_4:-61082305 | Msa0175220:CDS |
| AGACGTAGCTGGAGCTATTG+CGG | 0.580587 | 1_4:-61083328 | Msa0175220:CDS |
| TTTGAGGACAAAGTCTACTT+GGG | 0.581534 | 1_4:-61081558 | Msa0175220:three_prime_UTR |
| CAGGAGCTATTATTTCGGAA+GGG | 0.582745 | 1_4:-61081940 | Msa0175220:CDS |
| CCATGTTAACCATGACATCA+TGG | 0.583441 | 1_4:-61085959 | Msa0175220:CDS |
| GGTCATTCTGATCACTCCGC+TGG | 0.584009 | 1_4:-61087316 | Msa0175220:CDS |
| CAGCAGCTAGAAGTGCTGAA+TGG | 0.585525 | 1_4:+61081819 | None:intergenic |
| GCTATTGAACTTGAAGAGGC+CGG | 0.585806 | 1_4:-61082301 | Msa0175220:CDS |
| TTAGTAGAATAGTATCTGAA+GGG | 0.587830 | 1_4:-61081976 | Msa0175220:CDS |
| CTGCTTCAACCATGATGTCA+TGG | 0.590843 | 1_4:+61085950 | None:intergenic |
| CAATAGCACCAACACGAACA+AGG | 0.593972 | 1_4:+61084424 | None:intergenic |
| GCAGCACCTATTAATGGCAC+AGG | 0.594699 | 1_4:+61084639 | None:intergenic |
| AAAGTGAAGGAAGCTGCAGC+GGG | 0.596369 | 1_4:-61086006 | Msa0175220:CDS |
| TATGAAGTACCTTGATGATG+AGG | 0.596634 | 1_4:-61086034 | Msa0175220:CDS |
| GAAAGTGAAGGAAGCTGCAG+CGG | 0.599166 | 1_4:-61086007 | Msa0175220:CDS |
| TAAAGGAGCTAAACCACCCT+CGG | 0.600173 | 1_4:+61083371 | None:intergenic |
| TGCATTGCTAGAACTTGTGA+AGG | 0.603172 | 1_4:-61084703 | Msa0175220:CDS |
| TTCCGAAATAATAGCTCCTG+TGG | 0.603640 | 1_4:+61081943 | None:intergenic |
| CGAGTGAACCTGGCAAAGAG+AGG | 0.604709 | 1_4:+61087355 | None:intergenic |
| TGGAGCCGATGATGGATCAA+AGG | 0.607714 | 1_4:-61083020 | Msa0175220:CDS |
| TTCAGCACTTCTAGCTGCTG+GGG | 0.609035 | 1_4:-61081816 | Msa0175220:CDS |
| AACTAGATTCTGCTCTAAGG+AGG | 0.611088 | 1_4:+61086369 | None:intergenic |
| TGGAAACATGACGAGTCCAT+GGG | 0.614382 | 1_4:-61081718 | Msa0175220:exon |
| ACCCAATCTTTGCTGCGGAG+GGG | 0.616154 | 1_4:+61082157 | None:intergenic |
| CGAGTGATTGAAACCGAGGG+TGG | 0.618745 | 1_4:-61083384 | Msa0175220:CDS |
| TGAAGTGCCCTTTGCCACTG+TGG | 0.620491 | 1_4:+61081755 | None:intergenic |
| GAAATGAGAAGTGTTAAGGT+TGG | 0.621861 | 1_4:+61087444 | None:intergenic |
| AAGTCATTAGAAAGGAAGCA+AGG | 0.621933 | 1_4:-61084728 | Msa0175220:CDS |
| GCCTAGCATACGAACAAACA+AGG | 0.626275 | 1_4:+61086514 | None:intergenic |
| TTGAAGATAGTGATTGCAGA+AGG | 0.627279 | 1_4:+61086324 | None:intergenic |
| GAGTGAACCTGGCAAAGAGA+GGG | 0.627352 | 1_4:+61087356 | None:intergenic |
| TGCCGAGTGATTGAAACCGA+GGG | 0.634638 | 1_4:-61083387 | Msa0175220:CDS |
| GAGGCGCCTGCATTTCCAGA+TGG | 0.635163 | 1_4:-61084585 | Msa0175220:CDS |
| GAGCGTGTCAATGAAATGGG+AGG | 0.636528 | 1_4:+61082204 | None:intergenic |
| AGCGTGTCAATGAAATGGGA+GGG | 0.637506 | 1_4:+61082205 | None:intergenic |
| CAGATGGCACAGAAATCGAA+AGG | 0.639899 | 1_4:-61084569 | Msa0175220:CDS |
| CAGCTACCCAATCTTTGCTG+CGG | 0.649246 | 1_4:+61082152 | None:intergenic |
| CACAAACTCAAGAACAGATG+CGG | 0.650980 | 1_4:+61082706 | None:intergenic |
| TAGTAGAATAGTATCTGAAG+GGG | 0.655599 | 1_4:-61081975 | Msa0175220:CDS |
| AACATGACGAGTCCATGGGA+AGG | 0.664260 | 1_4:-61081714 | Msa0175220:exon |
| CAATGCAAGAGTGTCAGACG+CGG | 0.664864 | 1_4:+61084357 | None:intergenic |
| TTGCCGAGTGATTGAAACCG+AGG | 0.671670 | 1_4:-61083388 | Msa0175220:CDS |
| TGATGAGGATATGAAAGTGA+AGG | 0.675412 | 1_4:-61086019 | Msa0175220:CDS |
| ACAACAAGATTAATACAACC+AGG | 0.686889 | 1_4:+61086395 | None:intergenic |
| CAGGCGCCTCGTATAAACGT+GGG | 0.689019 | 1_4:+61084598 | None:intergenic |
| TGACTTTGGTGATAGCTACG+TGG | 0.692051 | 1_4:-61086537 | Msa0175220:CDS |
| GCAGGCGCCTCGTATAAACG+TGG | 0.692382 | 1_4:+61084597 | None:intergenic |
| AGGACTTCAAAATCTCCACA+AGG | 0.708917 | 1_4:+61082753 | None:intergenic |
| ATACAACCCACGTTTATACG+AGG | 0.715558 | 1_4:-61084604 | Msa0175220:CDS |
| AGCAGAGACAGAATCTGACG+TGG | 0.737628 | 1_4:-61082347 | Msa0175220:CDS |
| TTGCAATATCTGCAGCATCG+CGG | 0.740478 | 1_4:-61082276 | Msa0175220:CDS |
| TATGCGTATTGCATTCAAGG+AGG | 0.753564 | 1_4:-61084232 | Msa0175220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAATTTCATATAAATAA+AGG | - | chr1_4:61083608-61083627 | Msa0175220:intron | 10.0% |
| !!! | GTTCAAAATATATTTTTTTA+GGG | + | chr1_4:61083660-61083679 | None:intergenic | 10.0% |
| !!! | AGTTCAAAATATATTTTTTT+AGG | + | chr1_4:61083661-61083680 | None:intergenic | 10.0% |
| !! | AAAAAAATGAAATTCTAAAT+AGG | + | chr1_4:61085578-61085597 | None:intergenic | 10.0% |
| !! | ATATTATGATTTACAAATAG+TGG | + | chr1_4:61081591-61081610 | None:intergenic | 15.0% |
| !!! | TTGTCTAAAATATTATAATG+TGG | - | chr1_4:61081965-61081984 | Msa0175220:CDS | 15.0% |
| !! | TAATTAGTATACAAAAACTT+TGG | - | chr1_4:61082490-61082509 | Msa0175220:intron | 15.0% |
| !! | TATATCAAGAATTATAAAAC+TGG | + | chr1_4:61082834-61082853 | None:intergenic | 15.0% |
| !!! | AAATTATATGGTTCTAATTA+GGG | - | chr1_4:61083239-61083258 | Msa0175220:intron | 15.0% |
| !!! | ACTTAACAAGATTTTAATTT+TGG | - | chr1_4:61085459-61085478 | Msa0175220:intron | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr1_4:61087336-61087355 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr1_4:61087335-61087354 | Msa0175220:CDS | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr1_4:61087359-61087378 | Msa0175220:CDS | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | - | chr1_4:61087462-61087481 | Msa0175220:CDS | 15.0% |
| !! | TGTGAAATTAAGAAAATGAA+GGG | + | chr1_4:61081435-61081454 | None:intergenic | 20.0% |
| !! | GTAAATCATAATATGTTCAT+TGG | - | chr1_4:61081597-61081616 | Msa0175220:three_prime_UTR | 20.0% |
| !!! | GAAATTATATGGTTCTAATT+AGG | - | chr1_4:61083238-61083257 | Msa0175220:intron | 20.0% |
| !!! | TAAATTATGTATGCTTTGAA+TGG | - | chr1_4:61083468-61083487 | Msa0175220:intron | 20.0% |
| !! | AAGAGACAAATATAAACTTA+GGG | + | chr1_4:61083583-61083602 | None:intergenic | 20.0% |
| !! | AAAGAGACAAATATAAACTT+AGG | + | chr1_4:61083584-61083603 | None:intergenic | 20.0% |
| !!! | ATGAGTTTTTATCTTAATTC+AGG | - | chr1_4:61083911-61083930 | Msa0175220:intron | 20.0% |
| !! | TATAACAAACCTTCTAAATT+TGG | - | chr1_4:61084152-61084171 | Msa0175220:CDS | 20.0% |
| !!! | TACAACAATAGAGTATATTT+TGG | - | chr1_4:61084633-61084652 | Msa0175220:CDS | 20.0% |
| !!! | ATGAAAGAAAGTACTTTATA+AGG | + | chr1_4:61084678-61084697 | None:intergenic | 20.0% |
| !! | CATTGTAAACAGAAAAATTA+AGG | - | chr1_4:61084695-61084714 | Msa0175220:CDS | 20.0% |
| !! | AGAAACAATTGTACATATAA+CGG | - | chr1_4:61084966-61084985 | Msa0175220:intron | 20.0% |
| !! | AAGGGATATTATACAAATTA+AGG | - | chr1_4:61084992-61085011 | Msa0175220:intron | 20.0% |
| !!! | AGTTTGTATTTTCTGTTATA+TGG | - | chr1_4:61085074-61085093 | Msa0175220:intron | 20.0% |
| !! | AATAAATGAAAAGAAGATAG+AGG | - | chr1_4:61085106-61085125 | Msa0175220:intron | 20.0% |
| !! | ATAAATGAAAAGAAGATAGA+GGG | - | chr1_4:61085107-61085126 | Msa0175220:intron | 20.0% |
| !!! | ATGTTTTGGAAAATGAAATA+GGG | - | chr1_4:61085156-61085175 | Msa0175220:intron | 20.0% |
| !!! | CGTTTTAAAATACTAACTAA+AGG | + | chr1_4:61085344-61085363 | None:intergenic | 20.0% |
| !! | TCTTATATGTTAACTAATTC+TGG | - | chr1_4:61085411-61085430 | Msa0175220:intron | 20.0% |
| !! | TAAACATTGTAAAACGAAAA+TGG | + | chr1_4:61086145-61086164 | None:intergenic | 20.0% |
| !! | AATACTGTATAATCTTAGTA+TGG | - | chr1_4:61086843-61086862 | Msa0175220:intron | 20.0% |
| !!! | CAAAATACCTTTTACAAATA+AGG | + | chr1_4:61087073-61087092 | None:intergenic | 20.0% |
| !! | ATAATTGGTTATTAATGATG+AGG | - | chr1_4:61087193-61087212 | Msa0175220:intron | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr1_4:61087302-61087321 | Msa0175220:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr1_4:61087345-61087364 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr1_4:61087422-61087441 | Msa0175220:CDS | 20.0% |
| ! | GTGTGAAATTAAGAAAATGA+AGG | + | chr1_4:61081436-61081455 | None:intergenic | 25.0% |
| ! | AGTGTTATGTTATGTTTAAC+TGG | - | chr1_4:61081662-61081681 | Msa0175220:three_prime_UTR | 25.0% |
| ! | GAGAGAAGAACTTAAATAAA+CGG | - | chr1_4:61081780-61081799 | Msa0175220:CDS | 25.0% |
| ! | AACAAGCTATAATTACTCTT+TGG | - | chr1_4:61082229-61082248 | Msa0175220:CDS | 25.0% |
| ! | TTAAACTACTATACATAAGC+AGG | + | chr1_4:61083055-61083074 | None:intergenic | 25.0% |
| ! | GGAACGTATCAAAATAAATT+TGG | + | chr1_4:61083113-61083132 | None:intergenic | 25.0% |
| ! | AACATTTCTGTTGAGATTTA+GGG | + | chr1_4:61083722-61083741 | None:intergenic | 25.0% |
| ! | TAACATTTCTGTTGAGATTT+AGG | + | chr1_4:61083723-61083742 | None:intergenic | 25.0% |
| !!! | CAGAATGTCATTATTTCTAA+TGG | + | chr1_4:61083784-61083803 | None:intergenic | 25.0% |
| !! | GTTTACTGATATTTTTCCTT+TGG | - | chr1_4:61083806-61083825 | Msa0175220:intron | 25.0% |
| ! | TCAGTAAAATTCAATACCAA+AGG | + | chr1_4:61083825-61083844 | None:intergenic | 25.0% |
| !! | GATAAAAACTCATCACATTT+TGG | + | chr1_4:61083904-61083923 | None:intergenic | 25.0% |
| !!! | TTACAGAATTCTTGTTATTG+AGG | - | chr1_4:61084022-61084041 | Msa0175220:intron | 25.0% |
| ! | ATAAGAAATTATCAGTTGAC+AGG | - | chr1_4:61084769-61084788 | Msa0175220:intron | 25.0% |
| ! | TAAGAAATTATCAGTTGACA+GGG | - | chr1_4:61084770-61084789 | Msa0175220:intron | 25.0% |
| !!! | TTTCCTTATTTTGTGGTTTT+AGG | + | chr1_4:61084923-61084942 | None:intergenic | 25.0% |
| !!! | TGATTCATTTCCTTATTTTG+TGG | + | chr1_4:61084930-61084949 | None:intergenic | 25.0% |
| ! | TGAATCATATTCCAGAATTA+AGG | - | chr1_4:61084943-61084962 | Msa0175220:intron | 25.0% |
| !! | ATTGTACATATAACGGAAAA+AGG | - | chr1_4:61084973-61084992 | Msa0175220:intron | 25.0% |
| !! | TTGTACATATAACGGAAAAA+GGG | - | chr1_4:61084974-61084993 | Msa0175220:intron | 25.0% |
| ! | GAAAATACAAACTTACCATA+GGG | + | chr1_4:61085067-61085086 | None:intergenic | 25.0% |
| ! | AGAAAATACAAACTTACCAT+AGG | + | chr1_4:61085068-61085087 | None:intergenic | 25.0% |
| !!! | GATGTTTTGGAAAATGAAAT+AGG | - | chr1_4:61085155-61085174 | Msa0175220:intron | 25.0% |
| ! | TATGCTATGAATTGCTAAAA+TGG | - | chr1_4:61085214-61085233 | Msa0175220:intron | 25.0% |
| ! | GCAAAAGCTAAAATATAAAC+TGG | - | chr1_4:61085433-61085452 | Msa0175220:intron | 25.0% |
| ! | TTTAACTGCATCTCTTTATT+GGG | + | chr1_4:61085533-61085552 | None:intergenic | 25.0% |
| !!! | GATTCTTTTCAGTTTTATGA+TGG | - | chr1_4:61085622-61085641 | Msa0175220:intron | 25.0% |
| ! | TTCATCTATATACAGTTACA+AGG | - | chr1_4:61085793-61085812 | Msa0175220:intron | 25.0% |
| ! | CTGAAAAGTTTAGTTAACAT+TGG | - | chr1_4:61085859-61085878 | Msa0175220:intron | 25.0% |
| ! | TTTCTCTTCAATAAAACATC+AGG | - | chr1_4:61085887-61085906 | Msa0175220:intron | 25.0% |
| ! | TCAATATCCACAGAAATAAT+CGG | + | chr1_4:61086039-61086058 | None:intergenic | 25.0% |
| ! | ATTTCTGTGGATATTGAAAA+TGG | - | chr1_4:61086042-61086061 | Msa0175220:CDS | 25.0% |
| ! | GCAAAATCTCTTGAAAATTT+CGG | - | chr1_4:61086083-61086102 | Msa0175220:CDS | 25.0% |
| ! | CAAAATCTCTTGAAAATTTC+GGG | - | chr1_4:61086084-61086103 | Msa0175220:CDS | 25.0% |
| ! | AAATCACACTCAAATTGAAA+GGG | + | chr1_4:61086209-61086228 | None:intergenic | 25.0% |
| ! | AAAATCACACTCAAATTGAA+AGG | + | chr1_4:61086210-61086229 | None:intergenic | 25.0% |
| ! | ATAGAGAACTTAGTTTAACT+AGG | + | chr1_4:61086573-61086592 | None:intergenic | 25.0% |
| ! | TTAGTAGAATAGTATCTGAA+GGG | - | chr1_4:61086719-61086738 | Msa0175220:intron | 25.0% |
| !! | TTGGTTATGTATCTTAGTTT+TGG | - | chr1_4:61087110-61087129 | Msa0175220:intron | 25.0% |
| !!! | TGGTTATGTATCTTAGTTTT+GGG | - | chr1_4:61087111-61087130 | Msa0175220:intron | 25.0% |
| ! | AACTCGAGAAATTCTATAAT+TGG | - | chr1_4:61087178-61087197 | Msa0175220:intron | 25.0% |
| ! | ATTGTTGTTGTTGTTGTTGA+GGG | + | chr1_4:61081280-61081299 | None:intergenic | 30.0% |
| ! | TATTGTTGTTGTTGTTGTTG+AGG | + | chr1_4:61081281-61081300 | None:intergenic | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr1_4:61081852-61081871 | None:intergenic | 30.0% |
| !!! | TTTTTTTGTTAGCCTCTTTG+TGG | - | chr1_4:61082038-61082057 | Msa0175220:CDS | 30.0% |
| ! | AATGCTTGAATTTTGCTTTC+AGG | - | chr1_4:61082104-61082123 | Msa0175220:CDS | 30.0% |
| AGGAAATAGATGAAGTAGAA+GGG | - | chr1_4:61082124-61082143 | Msa0175220:CDS | 30.0% | |
| GACAATATAATGCAATTTCC+TGG | - | chr1_4:61082282-61082301 | Msa0175220:CDS | 30.0% | |
| ACAACAAGATTAATACAACC+AGG | + | chr1_4:61082303-61082322 | None:intergenic | 30.0% | |
| TATCTTCAATCGACCAATAT+AGG | - | chr1_4:61082385-61082404 | Msa0175220:intron | 30.0% | |
| GTGTAGAAAATGAGAACATT+TGG | - | chr1_4:61082531-61082550 | Msa0175220:intron | 30.0% | |
| ! | TTTCAATGTCTCACCAATTT+TGG | + | chr1_4:61082779-61082798 | None:intergenic | 30.0% |
| AGGTGCAAACACATAAATTA+TGG | + | chr1_4:61082902-61082921 | None:intergenic | 30.0% | |
| TTTGATGTTGTATAAAAGCC+TGG | - | chr1_4:61082954-61082973 | Msa0175220:intron | 30.0% | |
| GAGGCAATGTTGAAATTATA+TGG | - | chr1_4:61083227-61083246 | Msa0175220:intron | 30.0% | |
| !! | TATATGGTTCTAATTAGGGA+AGG | - | chr1_4:61083243-61083262 | Msa0175220:intron | 30.0% |
| AGGAGGAAAAAAGATAGTTA+AGG | - | chr1_4:61083263-61083282 | Msa0175220:intron | 30.0% | |
| !! | ATTTTTAAGCTTGTGCAGTT+GGG | + | chr1_4:61083325-61083344 | None:intergenic | 30.0% |
| ! | AGTATCGTGGATAATCTTTT+AGG | + | chr1_4:61083366-61083385 | None:intergenic | 30.0% |
| !! | ATCTTCAGAATAAAGTATCG+TGG | + | chr1_4:61083379-61083398 | None:intergenic | 30.0% |
| ATCGATACTCTAATGAAGTT+TGG | - | chr1_4:61083410-61083429 | Msa0175220:intron | 30.0% | |
| ! | ATTATGTATGCTTTGAATGG+AGG | - | chr1_4:61083471-61083490 | Msa0175220:intron | 30.0% |
| ! | TTATGTATGCTTTGAATGGA+GGG | - | chr1_4:61083472-61083491 | Msa0175220:intron | 30.0% |
| TTTCCATTCAACTTATCAGA+AGG | + | chr1_4:61083755-61083774 | None:intergenic | 30.0% | |
| ! | TCTGATAAGTTGAATGGAAA+AGG | - | chr1_4:61083755-61083774 | Msa0175220:intron | 30.0% |
| ATTCTCATAGTTCTTACCAA+AGG | - | chr1_4:61083852-61083871 | Msa0175220:intron | 30.0% | |
| TCTAATGACTTTAGATGCTT+CGG | + | chr1_4:61083958-61083977 | None:intergenic | 30.0% | |
| ! | AGCATCTAAAGTCATTAGAA+AGG | - | chr1_4:61083959-61083978 | Msa0175220:intron | 30.0% |
| !! | AGAATTCTTGTTATTGAGGA+AGG | - | chr1_4:61084026-61084045 | Msa0175220:intron | 30.0% |
| GCAAAAGTCAATGCAATTAT+TGG | - | chr1_4:61084230-61084249 | Msa0175220:CDS | 30.0% | |
| TGTCCTAAAACCACAAAATA+AGG | - | chr1_4:61084917-61084936 | Msa0175220:intron | 30.0% | |
| ! | CAATTGTTTCTCCTTAATTC+TGG | + | chr1_4:61084957-61084976 | None:intergenic | 30.0% |
| AGTATCATTTAGATGGTGAA+AGG | - | chr1_4:61085037-61085056 | Msa0175220:intron | 30.0% | |
| TTTGGAAAATGAAATAGGGA+TGG | - | chr1_4:61085160-61085179 | Msa0175220:intron | 30.0% | |
| CTTTAACTGCATCTCTTTAT+TGG | + | chr1_4:61085534-61085553 | None:intergenic | 30.0% | |
| CAATAAAGAGATGCAGTTAA+AGG | - | chr1_4:61085532-61085551 | Msa0175220:intron | 30.0% | |
| ACCAGTTAATGAATCTAAGA+AGG | - | chr1_4:61085645-61085664 | Msa0175220:intron | 30.0% | |
| !! | AATGAATCTAAGAAGGCATT+TGG | - | chr1_4:61085652-61085671 | Msa0175220:intron | 30.0% |
| TAATTCCTTTGATCCATCAT+CGG | + | chr1_4:61085683-61085702 | None:intergenic | 30.0% | |
| !! | ATATCCTTTTAGCTAACCTT+GGG | + | chr1_4:61085738-61085757 | None:intergenic | 30.0% |
| TAAAAGGATATGAACCACAA+GGG | - | chr1_4:61085747-61085766 | Msa0175220:intron | 30.0% | |
| AATTTCTGCTCTTTAATGTG+TGG | - | chr1_4:61086112-61086131 | Msa0175220:CDS | 30.0% | |
| ! | TGATTTTTGCTAGTGGAAAA+AGG | - | chr1_4:61086223-61086242 | Msa0175220:intron | 30.0% |
| ATATGCTATTGAACTTGAAG+AGG | - | chr1_4:61086390-61086409 | Msa0175220:CDS | 30.0% | |
| GTTAAACTAAGTTCTCTATC+TGG | - | chr1_4:61086574-61086593 | Msa0175220:intron | 30.0% | |
| CTTAGTAGAATAGTATCTGA+AGG | - | chr1_4:61086718-61086737 | Msa0175220:intron | 30.0% | |
| TAGTAGAATAGTATCTGAAG+GGG | - | chr1_4:61086720-61086739 | Msa0175220:intron | 30.0% | |
| TGACAGAACAATTCTTCTTA+AGG | + | chr1_4:61086914-61086933 | None:intergenic | 30.0% | |
| TATGTTTAGAAGAACATCCT+TGG | - | chr1_4:61087046-61087065 | Msa0175220:intron | 30.0% | |
| !!! | AGGTATTTTGATTCTACTAG+TGG | - | chr1_4:61087083-61087102 | Msa0175220:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr1_4:61087253-61087272 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr1_4:61087254-61087273 | Msa0175220:intron | 30.0% |
| ! | GTAGTGTACAGAGTATTAAT+TGG | - | chr1_4:61087384-61087403 | Msa0175220:CDS | 30.0% |
| ! | TGTACAGAGTATTAATTGGA+TGG | - | chr1_4:61087388-61087407 | Msa0175220:CDS | 30.0% |
| !! | GAAATGAGAAGTGTTAAGGT+TGG | + | chr1_4:61081254-61081273 | None:intergenic | 35.0% |
| AGGGTTGAGATTAAAACTCA+CGG | + | chr1_4:61081416-61081435 | None:intergenic | 35.0% | |
| AGAAGTGATTCAGTTATGGA+AGG | + | chr1_4:61081500-61081519 | None:intergenic | 35.0% | |
| CAAGAGAAGTGATTCAGTTA+TGG | + | chr1_4:61081504-61081523 | None:intergenic | 35.0% | |
| ! | CTGGATTCAGTTCTAATGTA+TGG | - | chr1_4:61081681-61081700 | Msa0175220:three_prime_UTR | 35.0% |
| ! | TATGGTATGCTCACTGTTTT+AGG | - | chr1_4:61081699-61081718 | Msa0175220:three_prime_UTR | 35.0% |
| ! | ATGGTATGCTCACTGTTTTA+GGG | - | chr1_4:61081700-61081719 | Msa0175220:three_prime_UTR | 35.0% |
| GTTCAAATAAGTCAATCCAG+AGG | + | chr1_4:61081726-61081745 | None:intergenic | 35.0% | |
| CAGGAAATAGATGAAGTAGA+AGG | - | chr1_4:61082123-61082142 | Msa0175220:CDS | 35.0% | |
| GGAAATAGATGAAGTAGAAG+GGG | - | chr1_4:61082125-61082144 | Msa0175220:CDS | 35.0% | |
| TATCAAGTGGATCATGATCT+AGG | + | chr1_4:61082206-61082225 | None:intergenic | 35.0% | |
| !! | ATAGCTTGTTCTCTATCAAG+TGG | + | chr1_4:61082219-61082238 | None:intergenic | 35.0% |
| ACTCTTTGGCAATATTCACT+TGG | - | chr1_4:61082243-61082262 | Msa0175220:CDS | 35.0% | |
| TTGAAGATAGTGATTGCAGA+AGG | + | chr1_4:61082374-61082393 | None:intergenic | 35.0% | |
| CTGCTACAGAATTCCTATAT+TGG | + | chr1_4:61082401-61082420 | None:intergenic | 35.0% | |
| !!! | CATTTGGAACTCTTTTTTGC+AGG | - | chr1_4:61082547-61082566 | Msa0175220:intron | 35.0% |
| !!! | GAACTCTTTTTTGCAGGTAA+AGG | - | chr1_4:61082553-61082572 | Msa0175220:intron | 35.0% |
| ! | CGCTCTTTGCAATTTTTACT+CGG | + | chr1_4:61082625-61082644 | None:intergenic | 35.0% |
| !! | TATGAAGTACCTTGATGATG+AGG | - | chr1_4:61082661-61082680 | Msa0175220:CDS | 35.0% |
| CTTTCATATCCTCATCATCA+AGG | + | chr1_4:61082673-61082692 | None:intergenic | 35.0% | |
| TGATGAGGATATGAAAGTGA+AGG | - | chr1_4:61082676-61082695 | Msa0175220:CDS | 35.0% | |
| !! | AGCAGGTGTTATTCCAAAAT+TGG | - | chr1_4:61082763-61082782 | Msa0175220:CDS | 35.0% |
| ATTGGTGAGACATTGAAAGA+TGG | - | chr1_4:61082781-61082800 | Msa0175220:CDS | 35.0% | |
| CACCTAAAACATTATGCTCT+CGG | - | chr1_4:61082917-61082936 | Msa0175220:intron | 35.0% | |
| ACCTAAAACATTATGCTCTC+GGG | - | chr1_4:61082918-61082937 | Msa0175220:intron | 35.0% | |
| !!! | GAACTCGGCAGTTTTTTTTT+TGG | - | chr1_4:61082996-61083015 | Msa0175220:CDS | 35.0% |
| !!! | GGCAGTTTTTTTTTTGGAGA+GGG | - | chr1_4:61083002-61083021 | Msa0175220:CDS | 35.0% |
| ACATAAGCTACCTTCTATAG+TGG | - | chr1_4:61083029-61083048 | Msa0175220:CDS | 35.0% | |
| ACGTTCCTATAGAAAATACG+AGG | - | chr1_4:61083126-61083145 | Msa0175220:intron | 35.0% | |
| ! | TGGATCCTCGTATTTTCTAT+AGG | + | chr1_4:61083134-61083153 | None:intergenic | 35.0% |
| GAATCATGAGTCAATCTTCT+TGG | + | chr1_4:61083154-61083173 | None:intergenic | 35.0% | |
| ACTCATGATTCTATGCAAGT+TGG | - | chr1_4:61083163-61083182 | Msa0175220:intron | 35.0% | |
| GAGTCTATTTGGTCTATTCA+TGG | - | chr1_4:61083189-61083208 | Msa0175220:intron | 35.0% | |
| ! | GTTAAGGCTAATTTTGTGCA+AGG | - | chr1_4:61083279-61083298 | Msa0175220:intron | 35.0% |
| !! | GATTTTTAAGCTTGTGCAGT+TGG | + | chr1_4:61083326-61083345 | None:intergenic | 35.0% |
| ! | TATGTATGCTTTGAATGGAG+GGG | - | chr1_4:61083473-61083492 | Msa0175220:intron | 35.0% |
| TTCTGTTGAGATTTAGGGAT+CGG | + | chr1_4:61083717-61083736 | None:intergenic | 35.0% | |
| ! | TGTTCTAAGCATCAAGAGAA+AGG | + | chr1_4:61083879-61083898 | None:intergenic | 35.0% |
| AAGTCATTAGAAAGGAAGCA+AGG | - | chr1_4:61083967-61083986 | Msa0175220:intron | 35.0% | |
| ! | TTAGTTCCTGTGCCATTAAT+AGG | - | chr1_4:61084050-61084069 | Msa0175220:intron | 35.0% |
| ACATATGCGTATTGCATTCA+AGG | - | chr1_4:61084460-61084479 | Msa0175220:CDS | 35.0% | |
| !! | GATAACCATTCTAGGGTTAA+GGG | - | chr1_4:61084884-61084903 | Msa0175220:intron | 35.0% |
| TATTTCCCTTAACCCTAGAA+TGG | + | chr1_4:61084892-61084911 | None:intergenic | 35.0% | |
| GTACAGCAGTATCATTTAGA+TGG | - | chr1_4:61085030-61085049 | Msa0175220:intron | 35.0% | |
| GCCTTCTTAGATTCATTAAC+TGG | + | chr1_4:61085649-61085668 | None:intergenic | 35.0% | |
| !!! | CCTTGGGTTTGTTTTTGATA+CGG | + | chr1_4:61085722-61085741 | None:intergenic | 35.0% |
| !! | CATATCCTTTTAGCTAACCT+TGG | + | chr1_4:61085739-61085758 | None:intergenic | 35.0% |
| CTAAAAGGATATGAACCACA+AGG | - | chr1_4:61085746-61085765 | Msa0175220:intron | 35.0% | |
| CAAAAAAACCTATACCCTTG+TGG | + | chr1_4:61085764-61085783 | None:intergenic | 35.0% | |
| TTCTTGTAAACTGGCTAAAG+AGG | + | chr1_4:61085965-61085984 | None:intergenic | 35.0% | |
| ! | TTGAGTGTGATTTTTGCTAG+TGG | - | chr1_4:61086216-61086235 | Msa0175220:intron | 35.0% |
| ! | TATGGGACTTGAGAATTTTG+CGG | + | chr1_4:61086516-61086535 | None:intergenic | 35.0% |
| AGTGTAACTTCTACGTTGAT+CGG | + | chr1_4:61086619-61086638 | None:intergenic | 35.0% | |
| TTGATCTGTTCTACAAGTCT+TGG | + | chr1_4:61086655-61086674 | None:intergenic | 35.0% | |
| ! | TTCATTCTCTTTAGAAGCAC+AGG | - | chr1_4:61086678-61086697 | Msa0175220:intron | 35.0% |
| TTCCACAGGAGCTATTATTT+CGG | - | chr1_4:61086750-61086769 | Msa0175220:intron | 35.0% | |
| ATTGAAGAAGGTAGTGAAAG+AGG | - | chr1_4:61086802-61086821 | Msa0175220:intron | 35.0% | |
| GAACAATTCTTCTTAAGGCT+GGG | + | chr1_4:61086909-61086928 | None:intergenic | 35.0% | |
| AGAACAATTCTTCTTAAGGC+TGG | + | chr1_4:61086910-61086929 | None:intergenic | 35.0% | |
| TGTTTAAAGATTCCTTCCCA+TGG | + | chr1_4:61086996-61087015 | None:intergenic | 35.0% | |
| ! | CCTTTTACAAATAAGGACCA+AGG | + | chr1_4:61087066-61087085 | None:intergenic | 35.0% |
| ! | CCTTGGTCCTTATTTGTAAA+AGG | - | chr1_4:61087063-61087082 | Msa0175220:intron | 35.0% |
| !! | TGATTCTACTAGTGGATTCT+TGG | - | chr1_4:61087091-61087110 | Msa0175220:intron | 35.0% |
| AAGTAGACTTTGTCCTCAAA+TGG | + | chr1_4:61087137-61087156 | None:intergenic | 35.0% | |
| ATTTGAGGACAAAGTCTACT+TGG | - | chr1_4:61087136-61087155 | Msa0175220:intron | 35.0% | |
| TTTGAGGACAAAGTCTACTT+GGG | - | chr1_4:61087137-61087156 | Msa0175220:intron | 35.0% | |
| !!! | GACACTCATTTTGAAACAGA+GGG | - | chr1_4:61087492-61087511 | Msa0175220:exon | 35.0% |
| !! | ATGAGAAGTGTTAAGGTTGG+AGG | + | chr1_4:61081251-61081270 | None:intergenic | 40.0% |
| ACTCGTAGTTGCAGCAATAA+CGG | - | chr1_4:61081358-61081377 | Msa0175220:intron | 40.0% | |
| GTTGAGATTAAAACTCACGG+GGG | + | chr1_4:61081413-61081432 | None:intergenic | 40.0% | |
| GGTTGAGATTAAAACTCACG+GGG | + | chr1_4:61081414-61081433 | None:intergenic | 40.0% | |
| GGGTTGAGATTAAAACTCAC+GGG | + | chr1_4:61081415-61081434 | None:intergenic | 40.0% | |
| AACTGAACTGAAGCAAAAGG+TGG | + | chr1_4:61081472-61081491 | None:intergenic | 40.0% | |
| CTGAACTGAACTGAAGCAAA+AGG | + | chr1_4:61081475-61081494 | None:intergenic | 40.0% | |
| GGTATTGTGAACAAACAGCA+CGG | - | chr1_4:61081986-61082005 | Msa0175220:CDS | 40.0% | |
| GACTTGAGTTTAGGCAACTA+TGG | - | chr1_4:61082008-61082027 | Msa0175220:CDS | 40.0% | |
| GTTTAGGCAACTATGGAGAT+AGG | - | chr1_4:61082015-61082034 | Msa0175220:CDS | 40.0% | |
| AACACAGACAAACCACAAAG+AGG | + | chr1_4:61082053-61082072 | None:intergenic | 40.0% | |
| CTTTGGCAATATTCACTTGG+TGG | - | chr1_4:61082246-61082265 | Msa0175220:CDS | 40.0% | |
| !! | AACTAGATTCTGCTCTAAGG+AGG | + | chr1_4:61082329-61082348 | None:intergenic | 40.0% |
| CCTTAGAGCAGAATCTAGTT+CGG | - | chr1_4:61082329-61082348 | Msa0175220:CDS | 40.0% | |
| AGGAATTCTGTAGCAGATAG+TGG | - | chr1_4:61082405-61082424 | Msa0175220:intron | 40.0% | |
| ATTGCTGACACAATCTTCCT+TGG | - | chr1_4:61082449-61082468 | Msa0175220:intron | 40.0% | |
| CCATGATGTCATGGTTAACA+TGG | + | chr1_4:61082739-61082758 | None:intergenic | 40.0% | |
| CCATGTTAACCATGACATCA+TGG | - | chr1_4:61082736-61082755 | Msa0175220:CDS | 40.0% | |
| !! | TCCCGAGAGCATAATGTTTT+AGG | + | chr1_4:61082922-61082941 | None:intergenic | 40.0% |
| !!! | CGGCAGTTTTTTTTTTGGAG+AGG | - | chr1_4:61083001-61083020 | Msa0175220:CDS | 40.0% |
| ! | CAAGTTGGAACGAGTCTATT+TGG | - | chr1_4:61083178-61083197 | Msa0175220:intron | 40.0% |
| ! | ATGGTAGTGCTTTGACTTTG+AGG | - | chr1_4:61083208-61083227 | Msa0175220:intron | 40.0% |
| !! | ATGGTTCTAATTAGGGAAGG+AGG | - | chr1_4:61083246-61083265 | Msa0175220:intron | 40.0% |
| ! | ATGTATGCTTTGAATGGAGG+GGG | - | chr1_4:61083474-61083493 | Msa0175220:intron | 40.0% |
| GATTAATACTGAAGCCTTCC+TGG | - | chr1_4:61083531-61083550 | Msa0175220:intron | 40.0% | |
| AACTAGAACCTTTGTTGACC+AGG | + | chr1_4:61083552-61083571 | None:intergenic | 40.0% | |
| ! | GTGCCTTCTGATAAGTTGAA+TGG | - | chr1_4:61083749-61083768 | Msa0175220:intron | 40.0% |
| TTAGATGCTTCGGAGTCATA+TGG | + | chr1_4:61083948-61083967 | None:intergenic | 40.0% | |
| TGCATTGCTAGAACTTGTGA+AGG | - | chr1_4:61083992-61084011 | Msa0175220:intron | 40.0% | |
| ! | ACGTGGGTTGTATGACTTAT+AGG | + | chr1_4:61084084-61084103 | None:intergenic | 40.0% |
| ATACAACCCACGTTTATACG+AGG | - | chr1_4:61084091-61084110 | Msa0175220:intron | 40.0% | |
| TCTGATGCGCCAAATTTAGA+AGG | + | chr1_4:61084164-61084183 | None:intergenic | 40.0% | |
| CAACAATTCCTTGTTCGTGT+TGG | - | chr1_4:61084263-61084282 | Msa0175220:CDS | 40.0% | |
| !! | TCGTGTTGGTGCTATTGAAA+TGG | - | chr1_4:61084277-61084296 | Msa0175220:CDS | 40.0% |
| TATGCGTATTGCATTCAAGG+AGG | - | chr1_4:61084463-61084482 | Msa0175220:CDS | 40.0% | |
| GTGCAGTTAGGCATTTAGTA+CGG | - | chr1_4:61084489-61084508 | Msa0175220:CDS | 40.0% | |
| ATCCGATCGATAACCATTCT+AGG | - | chr1_4:61084876-61084895 | Msa0175220:intron | 40.0% | |
| TCCGATCGATAACCATTCTA+GGG | - | chr1_4:61084877-61084896 | Msa0175220:intron | 40.0% | |
| ACCCTAGAATGGTTATCGAT+CGG | + | chr1_4:61084881-61084900 | None:intergenic | 40.0% | |
| !! | CGATAACCATTCTAGGGTTA+AGG | - | chr1_4:61084883-61084902 | Msa0175220:intron | 40.0% |
| !! | GAATCTAAGAAGGCATTTGG+TGG | - | chr1_4:61085655-61085674 | Msa0175220:intron | 40.0% |
| !! | TGTTTTTGATACGGCTTGCT+CGG | + | chr1_4:61085713-61085732 | None:intergenic | 40.0% |
| CCGTATCAAAAACAAACCCA+AGG | - | chr1_4:61085719-61085738 | Msa0175220:intron | 40.0% | |
| ! | CAAACCCAAGGTTAGCTAAA+AGG | - | chr1_4:61085731-61085750 | Msa0175220:intron | 40.0% |
| ! | GATATGAACCACAAGGGTAT+AGG | - | chr1_4:61085753-61085772 | Msa0175220:intron | 40.0% |
| AGGACTTCAAAATCTCCACA+AGG | + | chr1_4:61085945-61085964 | None:intergenic | 40.0% | |
| !! | TGCGGCTTTTTCTTGTAAAC+TGG | + | chr1_4:61085974-61085993 | None:intergenic | 40.0% |
| CACAAACTCAAGAACAGATG+CGG | + | chr1_4:61085992-61086011 | None:intergenic | 40.0% | |
| GAAATAATCGGACTCAGTGT+TGG | + | chr1_4:61086027-61086046 | None:intergenic | 40.0% | |
| !! | ACTGAGTCCGATTATTTCTG+TGG | - | chr1_4:61086029-61086048 | Msa0175220:CDS | 40.0% |
| CTTCTTTAGCACCACTTACA+TGG | - | chr1_4:61086264-61086283 | Msa0175220:CDS | 40.0% | |
| GAAGATTAGTGCCATGTAAG+TGG | + | chr1_4:61086278-61086297 | None:intergenic | 40.0% | |
| ! | CTCTTTAGAAGCACAGGAAA+AGG | - | chr1_4:61086684-61086703 | Msa0175220:intron | 40.0% |
| TAGAATAGTATCTGAAGGGG+TGG | - | chr1_4:61086723-61086742 | Msa0175220:intron | 40.0% | |
| TTCCGAAATAATAGCTCCTG+TGG | + | chr1_4:61086755-61086774 | None:intergenic | 40.0% | |
| ACAGGAGCTATTATTTCGGA+AGG | - | chr1_4:61086754-61086773 | Msa0175220:intron | 40.0% | |
| CAGGAGCTATTATTTCGGAA+GGG | - | chr1_4:61086755-61086774 | Msa0175220:intron | 40.0% | |
| AGGAGCTATTATTTCGGAAG+GGG | - | chr1_4:61086756-61086775 | Msa0175220:intron | 40.0% | |
| TTGGTGAAGCTGATTGAAGA+AGG | - | chr1_4:61086790-61086809 | Msa0175220:intron | 40.0% | |
| TTCTGTCAGAAAAACCACAG+TGG | - | chr1_4:61086926-61086945 | Msa0175220:intron | 40.0% | |
| AGAAAAACCACAGTGGCAAA+GGG | - | chr1_4:61086933-61086952 | Msa0175220:intron | 40.0% | |
| ACTTCATTTGCTCAGGAGTT+TGG | - | chr1_4:61086957-61086976 | Msa0175220:intron | 40.0% | |
| !!! | TCTTAGTTTTGGGCCATTTG+AGG | - | chr1_4:61087121-61087140 | Msa0175220:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr1_4:61087249-61087268 | None:intergenic | 40.0% |
| !!! | CGACACTCATTTTGAAACAG+AGG | - | chr1_4:61087491-61087510 | Msa0175220:exon | 40.0% |
| !! | AGGAAGAGGGTGTTAGGATT+GGG | + | chr1_4:61081231-61081250 | None:intergenic | 45.0% |
| GTGTTAAGGTTGGAGGAAGA+GGG | + | chr1_4:61081244-61081263 | None:intergenic | 45.0% | |
| AGTGTTAAGGTTGGAGGAAG+AGG | + | chr1_4:61081245-61081264 | None:intergenic | 45.0% | |
| !! | GCGCGAAATGAGAAGTGTTA+AGG | + | chr1_4:61081258-61081277 | None:intergenic | 45.0% |
| AACAGCACGGACTTGAGTTT+AGG | - | chr1_4:61081999-61082018 | Msa0175220:CDS | 45.0% | |
| GGGGAATCATCTTCTGACTT+TGG | - | chr1_4:61082144-61082163 | Msa0175220:CDS | 45.0% | |
| ! | TGACTTTGGTGATAGCTACG+TGG | - | chr1_4:61082158-61082177 | Msa0175220:CDS | 45.0% |
| !! | GCCTTGTTTGTTCGTATGCT+AGG | - | chr1_4:61082180-61082199 | Msa0175220:CDS | 45.0% |
| GCCTAGCATACGAACAAACA+AGG | + | chr1_4:61082184-61082203 | None:intergenic | 45.0% | |
| CCGAACTAGATTCTGCTCTA+AGG | + | chr1_4:61082332-61082351 | None:intergenic | 45.0% | |
| ! | AGAATCTAGTTCGGCTTGTG+AGG | - | chr1_4:61082338-61082357 | Msa0175220:CDS | 45.0% |
| ACAATCTTCCTTGGCTTCTG+AGG | - | chr1_4:61082458-61082477 | Msa0175220:intron | 45.0% | |
| !! | TTCCTTGGCTTCTGAGGTAT+AGG | - | chr1_4:61082464-61082483 | Msa0175220:intron | 45.0% |
| TTCCTATACCTCAGAAGCCA+AGG | + | chr1_4:61082469-61082488 | None:intergenic | 45.0% | |
| CTGCTTCAACCATGATGTCA+TGG | + | chr1_4:61082748-61082767 | None:intergenic | 45.0% | |
| CATGACATCATGGTTGAAGC+AGG | - | chr1_4:61082746-61082765 | Msa0175220:CDS | 45.0% | |
| CATAAGCAGGCCACTATAGA+AGG | + | chr1_4:61083042-61083061 | None:intergenic | 45.0% | |
| TTCCTGCTCAAGAGTTGTGT+TGG | - | chr1_4:61083077-61083096 | Msa0175220:intron | 45.0% | |
| AACCAACACAACTCTTGAGC+AGG | + | chr1_4:61083082-61083101 | None:intergenic | 45.0% | |
| ! | GCTAATTTTGTGCAAGGACG+TGG | - | chr1_4:61083285-61083304 | Msa0175220:intron | 45.0% |
| AGAACCTTTGTTGACCAGGA+AGG | + | chr1_4:61083548-61083567 | None:intergenic | 45.0% | |
| GTTGAGATTTAGGGATCGGA+TGG | + | chr1_4:61083713-61083732 | None:intergenic | 45.0% | |
| GCATCAAGAGAAAGGACCTT+TGG | + | chr1_4:61083871-61083890 | None:intergenic | 45.0% | |
| TAGGCTGCAGCACCTATTAA+TGG | + | chr1_4:61084065-61084084 | None:intergenic | 45.0% | |
| CTTTCGATTTCTGTGCCATC+TGG | + | chr1_4:61084128-61084147 | None:intergenic | 45.0% | |
| CAGATGGCACAGAAATCGAA+AGG | - | chr1_4:61084126-61084145 | Msa0175220:intron | 45.0% | |
| !! | GGCGCATCAGAAGTACTTAT+TGG | - | chr1_4:61084173-61084192 | Msa0175220:CDS | 45.0% |
| CAATAGCACCAACACGAACA+AGG | + | chr1_4:61084274-61084293 | None:intergenic | 45.0% | |
| ACACTCTTGCATTGGATCGA+CGG | - | chr1_4:61084347-61084366 | Msa0175220:CDS | 45.0% | |
| ! | CAATGATAATGCAGTCCAGC+TGG | - | chr1_4:61084523-61084542 | Msa0175220:CDS | 45.0% |
| ! | CTTTGGAAAAGCTGTCTGCT+AGG | - | chr1_4:61084558-61084577 | Msa0175220:CDS | 45.0% |
| CAGTTGACAGGGAGAAAAGA+TGG | - | chr1_4:61084781-61084800 | Msa0175220:intron | 45.0% | |
| ATGGTGAAAGGTAGACCCTA+TGG | - | chr1_4:61085049-61085068 | Msa0175220:intron | 45.0% | |
| !! | AATAGGGATGGCTTTGACAG+TGG | - | chr1_4:61085172-61085191 | Msa0175220:intron | 45.0% |
| !! | ATAGGGATGGCTTTGACAGT+GGG | - | chr1_4:61085173-61085192 | Msa0175220:intron | 45.0% |
| TAAAGGAGCTAAACCACCCT+CGG | + | chr1_4:61085327-61085346 | None:intergenic | 45.0% | |
| TTAAAACGCTCAGACGTAGC+TGG | - | chr1_4:61085356-61085375 | Msa0175220:intron | 45.0% | |
| CGCATCTGTTCTTGAGTTTG+TGG | - | chr1_4:61085990-61086009 | Msa0175220:CDS | 45.0% | |
| GCTATTGAACTTGAAGAGGC+CGG | - | chr1_4:61086394-61086413 | Msa0175220:CDS | 45.0% | |
| TGCTGCAGATATTGCAAGAC+CGG | + | chr1_4:61086416-61086435 | None:intergenic | 45.0% | |
| TTGCAATATCTGCAGCATCG+CGG | - | chr1_4:61086419-61086438 | Msa0175220:CDS | 45.0% | |
| AGCGTGTCAATGAAATGGGA+GGG | + | chr1_4:61086493-61086512 | None:intergenic | 45.0% | |
| ! | ATTCAGCACTTCTAGCTGCT+GGG | - | chr1_4:61086878-61086897 | Msa0175220:intron | 45.0% |
| CAGAAAAACCACAGTGGCAA+AGG | - | chr1_4:61086932-61086951 | Msa0175220:intron | 45.0% | |
| !! | AAAGGGCACTTCATTTGCTC+AGG | - | chr1_4:61086950-61086969 | Msa0175220:intron | 45.0% |
| TTGGAAACATGACGAGTCCA+TGG | - | chr1_4:61086976-61086995 | Msa0175220:intron | 45.0% | |
| TGGAAACATGACGAGTCCAT+GGG | - | chr1_4:61086977-61086996 | Msa0175220:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr1_4:61087250-61087269 | None:intergenic | 45.0% |
| !! | GAGGAAGAGGGTGTTAGGAT+TGG | + | chr1_4:61081232-61081251 | None:intergenic | 50.0% |
| ! | AGGGAGTTTGGAAGAGTACG+AGG | + | chr1_4:61081323-61081342 | None:intergenic | 50.0% |
| GAGTGAACCTGGCAAAGAGA+GGG | + | chr1_4:61081342-61081361 | None:intergenic | 50.0% | |
| ATTAAAACTCACGGGGGAGG+CGG | + | chr1_4:61081407-61081426 | None:intergenic | 50.0% | |
| GAGATTAAAACTCACGGGGG+AGG | + | chr1_4:61081410-61081429 | None:intergenic | 50.0% | |
| ATCTTCACTCGCTTCGTGAG+TGG | - | chr1_4:61081938-61081957 | Msa0175220:CDS | 50.0% | |
| GAAAGTGAAGGAAGCTGCAG+CGG | - | chr1_4:61082688-61082707 | Msa0175220:CDS | 50.0% | |
| AAAGTGAAGGAAGCTGCAGC+GGG | - | chr1_4:61082689-61082708 | Msa0175220:CDS | 50.0% | |
| TCTCCTGCTCTGTAGGAACT+CGG | - | chr1_4:61082981-61083000 | Msa0175220:CDS | 50.0% | |
| GAAGCCTTCCTGGTCAACAA+AGG | - | chr1_4:61083541-61083560 | Msa0175220:intron | 50.0% | |
| GCAGCACCTATTAATGGCAC+AGG | + | chr1_4:61084059-61084078 | None:intergenic | 50.0% | |
| TCTGTGCCATCTGGAAATGC+AGG | + | chr1_4:61084119-61084138 | None:intergenic | 50.0% | |
| !! | CAATGCAAGAGTGTCAGACG+CGG | + | chr1_4:61084341-61084360 | None:intergenic | 50.0% |
| CGTATTGCATTCAAGGAGGC+TGG | - | chr1_4:61084467-61084486 | Msa0175220:CDS | 50.0% | |
| TTGCCGAGTGATTGAAACCG+AGG | - | chr1_4:61085307-61085326 | Msa0175220:intron | 50.0% | |
| TGCCGAGTGATTGAAACCGA+GGG | - | chr1_4:61085308-61085327 | Msa0175220:intron | 50.0% | |
| CACCCTCGGTTTCAATCACT+CGG | + | chr1_4:61085313-61085332 | None:intergenic | 50.0% | |
| AGACGTAGCTGGAGCTATTG+CGG | - | chr1_4:61085367-61085386 | Msa0175220:intron | 50.0% | |
| AGCTGGAGCTATTGCGGAAA+AGG | - | chr1_4:61085373-61085392 | Msa0175220:intron | 50.0% | |
| !! | TGGAGCCGATGATGGATCAA+AGG | - | chr1_4:61085675-61085694 | Msa0175220:intron | 50.0% |
| ! | AGTTTTCACTGCACGCCTTG+TGG | - | chr1_4:61085927-61085946 | Msa0175220:intron | 50.0% |
| AGCAGAGACAGAATCTGACG+TGG | - | chr1_4:61086348-61086367 | Msa0175220:CDS | 50.0% | |
| GAGCGTGTCAATGAAATGGG+AGG | + | chr1_4:61086494-61086513 | None:intergenic | 50.0% | |
| GCGGAGCGTGTCAATGAAAT+GGG | + | chr1_4:61086497-61086516 | None:intergenic | 50.0% | |
| TGCGGAGCGTGTCAATGAAA+TGG | + | chr1_4:61086498-61086517 | None:intergenic | 50.0% | |
| TTTGCTGCGGAGGGGAATAT+GGG | + | chr1_4:61086533-61086552 | None:intergenic | 50.0% | |
| TACCCAATCTTTGCTGCGGA+GGG | + | chr1_4:61086542-61086561 | None:intergenic | 50.0% | |
| CAGCTACCCAATCTTTGCTG+CGG | + | chr1_4:61086546-61086565 | None:intergenic | 50.0% | |
| GGAAGGGGCTGTGTATTCTT+TGG | - | chr1_4:61086771-61086790 | Msa0175220:intron | 50.0% | |
| !! | CAGCAGCTAGAAGTGCTGAA+TGG | + | chr1_4:61086879-61086898 | None:intergenic | 50.0% |
| ! | CATTCAGCACTTCTAGCTGC+TGG | - | chr1_4:61086877-61086896 | Msa0175220:intron | 50.0% |
| ! | TTCAGCACTTCTAGCTGCTG+GGG | - | chr1_4:61086879-61086898 | Msa0175220:intron | 50.0% |
| AACATGACGAGTCCATGGGA+AGG | - | chr1_4:61086981-61087000 | Msa0175220:intron | 50.0% | |
| !! | GGTTGGAGGAAGAGGGTGTT+AGG | + | chr1_4:61081237-61081256 | None:intergenic | 55.0% |
| CGAGGAAGAGAGAGTGACTC+TGG | + | chr1_4:61081305-61081324 | None:intergenic | 55.0% | |
| CCTGGCAAAGAGAGGGAGTT+TGG | + | chr1_4:61081335-61081354 | None:intergenic | 55.0% | |
| CCAAACTCCCTCTCTTTGCC+AGG | - | chr1_4:61081332-61081351 | Msa0175220:intron | 55.0% | |
| CGAGTGAACCTGGCAAAGAG+AGG | + | chr1_4:61081343-61081362 | None:intergenic | 55.0% | |
| GCTGCAACTACGAGTGAACC+TGG | + | chr1_4:61081353-61081372 | None:intergenic | 55.0% | |
| GGTCATTCTGATCACTCCGC+TGG | - | chr1_4:61081379-61081398 | Msa0175220:intron | 55.0% | |
| TTAAAACTCACGGGGGAGGC+GGG | + | chr1_4:61081406-61081425 | None:intergenic | 55.0% | |
| !!! | GCTCACTGTTTTAGGGCCTC+TGG | - | chr1_4:61081707-61081726 | Msa0175220:three_prime_UTR | 55.0% |
| ! | GGAAGCTGCAGCGGGTATTT+TGG | - | chr1_4:61082697-61082716 | Msa0175220:CDS | 55.0% |
| TACAGAGCAGGAGAGGATCC+AGG | + | chr1_4:61082975-61082994 | None:intergenic | 55.0% | |
| TGGATCCTCTCCTGCTCTGT+AGG | - | chr1_4:61082974-61082993 | Msa0175220:intron | 55.0% | |
| GAGTTCCTACAGAGCAGGAG+AGG | + | chr1_4:61082982-61083001 | None:intergenic | 55.0% | |
| CAGGCGCCTCGTATAAACGT+GGG | + | chr1_4:61084100-61084119 | None:intergenic | 55.0% | |
| CGCGTCTGACACTCTTGCAT+TGG | - | chr1_4:61084339-61084358 | Msa0175220:CDS | 55.0% | |
| TCAAGGAGGCTGGTGCAGTT+AGG | - | chr1_4:61084477-61084496 | Msa0175220:CDS | 55.0% | |
| CGAGTGATTGAAACCGAGGG+TGG | - | chr1_4:61085311-61085330 | Msa0175220:intron | 55.0% | |
| ! | GCATTTGGTGGAGCCGATGA+TGG | - | chr1_4:61085667-61085686 | Msa0175220:intron | 55.0% |
| CTTTGCTGCGGAGGGGAATA+TGG | + | chr1_4:61086534-61086553 | None:intergenic | 55.0% | |
| TTCCCCTCCGCAGCAAAGAT+TGG | - | chr1_4:61086536-61086555 | Msa0175220:CDS | 55.0% | |
| TCCCCTCCGCAGCAAAGATT+GGG | - | chr1_4:61086537-61086556 | Msa0175220:CDS | 55.0% | |
| ACCCAATCTTTGCTGCGGAG+GGG | + | chr1_4:61086541-61086560 | None:intergenic | 55.0% | |
| CTACCCAATCTTTGCTGCGG+AGG | + | chr1_4:61086543-61086562 | None:intergenic | 55.0% | |
| GAAGGGGTGGTAGATTCCAC+AGG | - | chr1_4:61086736-61086755 | Msa0175220:intron | 55.0% | |
| ! | TGAAGTGCCCTTTGCCACTG+TGG | + | chr1_4:61086943-61086962 | None:intergenic | 55.0% |
| CTGCCGAGTTCCTACAGAGC+AGG | + | chr1_4:61082987-61083006 | None:intergenic | 60.0% | |
| GCAGGCGCCTCGTATAAACG+TGG | + | chr1_4:61084101-61084120 | None:intergenic | 60.0% | |
| ! | GAGGCGCCTGCATTTCCAGA+TGG | - | chr1_4:61084110-61084129 | Msa0175220:intron | 60.0% |
| ! | TCGGCTTGTGAGGCAGCTGC+AGG | - | chr1_4:61082348-61082367 | Msa0175220:CDS | 65.0% |
| AAGCTTGCGTCGCTGCCAGC+TGG | + | chr1_4:61084541-61084560 | None:intergenic | 65.0% | |
| GCTGGCAGCGACGCAAGCTT+TGG | - | chr1_4:61084541-61084560 | Msa0175220:CDS | 65.0% | |
| ! | CACGGGGGAGGCGGGACCAG+CGG | + | chr1_4:61081398-61081417 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 61081152 | 61087565 | 61081152 | ID=Msa0175220;Name=Msa0175220 |
| chr1_4 | mRNA | 61081152 | 61087565 | 61081152 | ID=Msa0175220-mRNA-1;Parent=Msa0175220;Name=Msa0175220-mRNA-1;_AED=0.06;_eAED=0.06;_QI=56|1|1|1|0.88|0.8|10|308|831 |
| chr1_4 | exon | 61081152 | 61081206 | 61081152 | ID=Msa0175220-mRNA-1:exon:19454;Parent=Msa0175220-mRNA-1 |
| chr1_4 | exon | 61081477 | 61082367 | 61081477 | ID=Msa0175220-mRNA-1:exon:19453;Parent=Msa0175220-mRNA-1 |
| chr1_4 | exon | 61082612 | 61082808 | 61082612 | ID=Msa0175220-mRNA-1:exon:19452;Parent=Msa0175220-mRNA-1 |
| chr1_4 | exon | 61082977 | 61083083 | 61082977 | ID=Msa0175220-mRNA-1:exon:19451;Parent=Msa0175220-mRNA-1 |
| chr1_4 | exon | 61083164 | 61083196 | 61083164 | ID=Msa0175220-mRNA-1:exon:19450;Parent=Msa0175220-mRNA-1 |
| chr1_4 | exon | 61083323 | 61083419 | 61083323 | ID=Msa0175220-mRNA-1:exon:19449;Parent=Msa0175220-mRNA-1 |
| chr1_4 | exon | 61084138 | 61084784 | 61084138 | ID=Msa0175220-mRNA-1:exon:19448;Parent=Msa0175220-mRNA-1 |
| chr1_4 | exon | 61085933 | 61086148 | 61085933 | ID=Msa0175220-mRNA-1:exon:19447;Parent=Msa0175220-mRNA-1 |
| chr1_4 | exon | 61086238 | 61086591 | 61086238 | ID=Msa0175220-mRNA-1:exon:19446;Parent=Msa0175220-mRNA-1 |
| chr1_4 | exon | 61087303 | 61087565 | 61087303 | ID=Msa0175220-mRNA-1:exon:19445;Parent=Msa0175220-mRNA-1 |
| chr1_4 | five_prime_UTR | 61087510 | 61087565 | 61087510 | ID=Msa0175220-mRNA-1:five_prime_utr;Parent=Msa0175220-mRNA-1 |
| chr1_4 | CDS | 61087303 | 61087509 | 61087303 | ID=Msa0175220-mRNA-1:cds;Parent=Msa0175220-mRNA-1 |
| chr1_4 | CDS | 61086238 | 61086591 | 61086238 | ID=Msa0175220-mRNA-1:cds;Parent=Msa0175220-mRNA-1 |
| chr1_4 | CDS | 61085933 | 61086148 | 61085933 | ID=Msa0175220-mRNA-1:cds;Parent=Msa0175220-mRNA-1 |
| chr1_4 | CDS | 61084138 | 61084784 | 61084138 | ID=Msa0175220-mRNA-1:cds;Parent=Msa0175220-mRNA-1 |
| chr1_4 | CDS | 61083323 | 61083419 | 61083323 | ID=Msa0175220-mRNA-1:cds;Parent=Msa0175220-mRNA-1 |
| chr1_4 | CDS | 61083164 | 61083196 | 61083164 | ID=Msa0175220-mRNA-1:cds;Parent=Msa0175220-mRNA-1 |
| chr1_4 | CDS | 61082977 | 61083083 | 61082977 | ID=Msa0175220-mRNA-1:cds;Parent=Msa0175220-mRNA-1 |
| chr1_4 | CDS | 61082612 | 61082808 | 61082612 | ID=Msa0175220-mRNA-1:cds;Parent=Msa0175220-mRNA-1 |
| chr1_4 | CDS | 61081730 | 61082367 | 61081730 | ID=Msa0175220-mRNA-1:cds;Parent=Msa0175220-mRNA-1 |
| chr1_4 | three_prime_UTR | 61081477 | 61081729 | 61081477 | ID=Msa0175220-mRNA-1:three_prime_utr;Parent=Msa0175220-mRNA-1 |
| chr1_4 | three_prime_UTR | 61081152 | 61081206 | 61081152 | ID=Msa0175220-mRNA-1:three_prime_utr;Parent=Msa0175220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
