Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176390 | sp|Q9LRN8|RK3B_ARATH | 66.667 | 324 | 78 | 4 | 1 | 294 | 1 | 324 | 1.03e-144 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176390 | G7I462 | 97.959 | 294 | 6 | 0 | 1 | 294 | 54 | 347 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036330 | Msa0176390 | 0.842776 | 2.103523e-58 | -8.615850e-47 |
| Msa0084250 | Msa0176390 | 0.800144 | 1.653864e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176390 | MtrunA17_Chr1g0198561 | 97.959 | 294 | 6 | 0 | 1 | 294 | 1 | 294 | 0.0 | 593 |
| Msa0176390 | MtrunA17_Chr6g0450631 | 92.517 | 294 | 22 | 0 | 1 | 294 | 1 | 294 | 0.0 | 568 |
| Msa0176390 | MtrunA17_Chr2g0324401 | 93.396 | 106 | 7 | 0 | 189 | 294 | 1 | 106 | 8.79e-69 | 209 |
| Msa0176390 | MtrunA17_Chr3g0145851 | 41.063 | 207 | 116 | 6 | 49 | 251 | 58 | 262 | 2.14e-43 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176390 | AT3G17465.1 | 66.667 | 324 | 78 | 4 | 1 | 294 | 1 | 324 | 1.05e-145 | 412 |
| Msa0176390 | AT2G43030.1 | 38.835 | 206 | 122 | 4 | 49 | 251 | 57 | 261 | 1.76e-39 | 139 |
Find 106 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGGATGTGGATCCATTTA+TGG | 0.158517 | 1_4:-62771519 | Msa0176390:CDS |
| ACACCAGTTCTTTGTGAATT+TGG | 0.165812 | 1_4:+62774252 | None:intergenic |
| TGACTGCTCATTGGGATAAA+TGG | 0.166624 | 1_4:-62774209 | Msa0176390:CDS |
| CTCACTGTTCAGGTCTTTAA+AGG | 0.228704 | 1_4:-62772320 | Msa0176390:intron |
| CTTTAATCAGTAACCATAAA+TGG | 0.233502 | 1_4:+62771506 | None:intergenic |
| GAATTCCAATTTCTATCCTT+TGG | 0.239774 | 1_4:-62774179 | Msa0176390:CDS |
| AAACCTTTGGTTGCTGATCT+TGG | 0.318983 | 1_4:-62771539 | Msa0176390:CDS |
| AAGGTCAGTGCCAAATAATT+TGG | 0.321682 | 1_4:+62771235 | None:intergenic |
| TCTACCCAAAGGATAGAAAT+TGG | 0.334271 | 1_4:+62774174 | None:intergenic |
| AACCTTTGGTTGCTGATCTT+GGG | 0.341776 | 1_4:-62771538 | Msa0176390:CDS |
| ACCCACATCAAATTTCTTGC+TGG | 0.343726 | 1_4:+62772227 | None:intergenic |
| GTTCAGATGTGGAGACTATA+AGG | 0.352256 | 1_4:-62774305 | Msa0176390:CDS |
| CATACTGCCCGGGAACAAAA+TGG | 0.352881 | 1_4:+62773370 | None:intergenic |
| CAGGGTGTAATGAAGAAGTA+TGG | 0.352968 | 1_4:-62772548 | Msa0176390:CDS |
| ATTGCTCTCAATACCCATTT+CGG | 0.369426 | 1_4:+62775235 | None:intergenic |
| GCCCTAAAATGACCCACTTC+AGG | 0.379527 | 1_4:+62773480 | None:intergenic |
| GATGGACAAAAGGGTATAGT+AGG | 0.388477 | 1_4:+62775184 | None:intergenic |
| TCATCTGAATCTTCATCTTC+CGG | 0.389387 | 1_4:+62771566 | None:intergenic |
| AGCACTATTTCCCACCGAAA+TGG | 0.389573 | 1_4:-62775249 | None:intergenic |
| AATGAACCCAAAACCCTAGA+TGG | 0.393729 | 1_4:+62775166 | None:intergenic |
| TTCAGATGATATGAAACCTT+TGG | 0.395479 | 1_4:-62771552 | Msa0176390:CDS |
| AATTCCAATTTCTATCCTTT+GGG | 0.400773 | 1_4:-62774178 | Msa0176390:CDS |
| ATGAAGAAGTATGGATTTCA+TGG | 0.403214 | 1_4:-62772539 | Msa0176390:CDS |
| GACTGCTCATTGGGATAAAT+GGG | 0.404613 | 1_4:-62774208 | Msa0176390:CDS |
| GGTTGCTGATCTTGGGGATG+TGG | 0.407346 | 1_4:-62771531 | Msa0176390:CDS |
| GAACAATAGCCTTCCTTCTC+AGG | 0.410835 | 1_4:+62774123 | None:intergenic |
| TAAAGAGATAGTTCCACAAA+TGG | 0.411274 | 1_4:-62771488 | Msa0176390:three_prime_UTR |
| TAGAAAGATGCCAGGGAGAA+TGG | 0.416986 | 1_4:-62772297 | Msa0176390:CDS |
| TGCTTCCCACCCATTCTCCC+TGG | 0.421120 | 1_4:+62772287 | None:intergenic |
| ACAAAGTTCCCTGTAGCTCC+TGG | 0.431609 | 1_4:+62771656 | None:intergenic |
| AGGAATACTTGGTCCTTGTA+AGG | 0.431878 | 1_4:-62772465 | Msa0176390:intron |
| GCACTATTTCCCACCGAAAT+GGG | 0.441587 | 1_4:-62775248 | None:intergenic |
| GATTGGTTGTGGACAGAAGA+AGG | 0.441589 | 1_4:-62773520 | Msa0176390:CDS |
| ACACAGGTCCCAGGAGCTAC+AGG | 0.448282 | 1_4:-62771665 | Msa0176390:intron |
| CCTGCAAATAAGTGTAGACT+TGG | 0.448720 | 1_4:-62771303 | Msa0176390:intron |
| ACCTTTGGTTGCTGATCTTG+GGG | 0.448994 | 1_4:-62771537 | Msa0176390:CDS |
| CAAAACCCTAGATGGACAAA+AGG | 0.452437 | 1_4:+62775174 | None:intergenic |
| ATGTGGAATGACTGCTCATT+GGG | 0.453159 | 1_4:-62774217 | Msa0176390:CDS |
| CATAGAACCATGGGTTCTAC+AGG | 0.456921 | 1_4:-62772485 | Msa0176390:CDS |
| TCTTCCGGCACAAAGTAAGT+TGG | 0.469195 | 1_4:+62771581 | None:intergenic |
| AGATGACAACATTGTCTCTC+AGG | 0.475183 | 1_4:-62774154 | Msa0176390:CDS |
| ACACCAAATTCACAAAGAAC+TGG | 0.478282 | 1_4:-62774255 | Msa0176390:CDS |
| CTTCCGGCACAAAGTAAGTT+GGG | 0.483444 | 1_4:+62771582 | None:intergenic |
| AGAAAGATGCCAGGGAGAAT+GGG | 0.487342 | 1_4:-62772296 | Msa0176390:CDS |
| AGAAATTTGATGTGGGTGAA+AGG | 0.489286 | 1_4:-62772221 | Msa0176390:CDS |
| GGACTCCATCCAACCTTACA+AGG | 0.491579 | 1_4:+62772452 | None:intergenic |
| AAAGAGATAGTTCCACAAAT+GGG | 0.492226 | 1_4:-62771487 | Msa0176390:three_prime_UTR |
| AATCGCGGCAGTGGTGCCAC+GGG | 0.495730 | 1_4:+62774333 | None:intergenic |
| ACAGGAATCACCAAAGGAAA+AGG | 0.499760 | 1_4:-62773339 | Msa0176390:CDS |
| AATGTGGAATGACTGCTCAT+TGG | 0.503569 | 1_4:-62774218 | Msa0176390:CDS |
| ACATTAAGTGATGTACCAAC+AGG | 0.507292 | 1_4:+62773396 | None:intergenic |
| TATGTGCTTTCGAATTCCCA+TGG | 0.513084 | 1_4:+62772504 | None:intergenic |
| TCTTGAAGCTTCCTCTTCAT+CGG | 0.518555 | 1_4:+62773447 | None:intergenic |
| AAAAGGGTATAGTAGGGTGT+TGG | 0.525900 | 1_4:+62775191 | None:intergenic |
| GAATTTGGTGTCATCACACT+AGG | 0.526237 | 1_4:+62774267 | None:intergenic |
| CTCAAGGAGTTCCGATGAAG+AGG | 0.527266 | 1_4:-62773458 | Msa0176390:CDS |
| TTTGATGTGGGTGAAAGGCC+AGG | 0.528326 | 1_4:-62772216 | Msa0176390:intron |
| AAAGGAAGTATAGATGTGTC+AGG | 0.528945 | 1_4:+62771605 | None:intergenic |
| GGAAGGCTATTGTTCTCTCC+AGG | 0.530451 | 1_4:-62774115 | Msa0176390:intron |
| ATGGGTTCTACAGGAATACT+TGG | 0.533632 | 1_4:-62772476 | Msa0176390:CDS |
| TGTGATGTCAACATACTGCC+CGG | 0.537181 | 1_4:+62773359 | None:intergenic |
| TCATCTTCGCATCTCAACTC+AGG | 0.540254 | 1_4:-62775117 | Msa0176390:intron |
| AAATCGCGGCAGTGGTGCCA+CGG | 0.542479 | 1_4:+62774332 | None:intergenic |
| GAGGATGCACTTCTTCCTGT+TGG | 0.552055 | 1_4:-62773411 | Msa0176390:CDS |
| TTTCCCAACTTACTTTGTGC+CGG | 0.552953 | 1_4:-62771585 | Msa0176390:CDS |
| CAAAGTTCCCTGTAGCTCCT+GGG | 0.553971 | 1_4:+62771657 | None:intergenic |
| CATGGAGGTTCAGCATCCCA+TGG | 0.557351 | 1_4:-62772521 | Msa0176390:CDS |
| ACACTTGACAAAGCCTGAAG+TGG | 0.560843 | 1_4:-62773493 | Msa0176390:CDS |
| TTTAAAGGTAGAAAGATGCC+AGG | 0.564006 | 1_4:-62772305 | Msa0176390:CDS |
| AAAACCCTAGATGGACAAAA+GGG | 0.565069 | 1_4:+62775175 | None:intergenic |
| TCAGGTCAAAACTCCTGAGA+AGG | 0.567631 | 1_4:-62774136 | Msa0176390:CDS |
| CTCTCAATACCCATTTCGGT+GGG | 0.570281 | 1_4:+62775239 | None:intergenic |
| ATGTGCTTTCGAATTCCCAT+GGG | 0.571228 | 1_4:+62772505 | None:intergenic |
| AACTAGAACTTATCGAGTGA+AGG | 0.580719 | 1_4:+62771371 | None:intergenic |
| TCAAGAGTTTCGAGTGACAG+AGG | 0.581725 | 1_4:-62773430 | Msa0176390:CDS |
| GCTCTCAATACCCATTTCGG+TGG | 0.582489 | 1_4:+62775238 | None:intergenic |
| GTGTGCACAACACAGGTCCC+AGG | 0.582644 | 1_4:-62771674 | Msa0176390:intron |
| ACCTCTTGAAAATGCCAGCA+TGG | 0.586278 | 1_4:+62774380 | None:intergenic |
| ATGGAGGTTCAGCATCCCAT+GGG | 0.591854 | 1_4:-62772520 | Msa0176390:CDS |
| GGGCAGTATGTTGACATCAC+AGG | 0.594209 | 1_4:-62773357 | Msa0176390:CDS |
| AAGATGCCAGGGAGAATGGG+TGG | 0.599236 | 1_4:-62772293 | Msa0176390:CDS |
| ATGGACAAAAGGGTATAGTA+GGG | 0.604099 | 1_4:+62775185 | None:intergenic |
| AAGTATTCCTGTAGAACCCA+TGG | 0.604216 | 1_4:+62772478 | None:intergenic |
| TCGAAAGCACATAGAACCAT+GGG | 0.605881 | 1_4:-62772494 | Msa0176390:CDS |
| GGCACAAAGTAAGTTGGGAA+AGG | 0.607369 | 1_4:+62771587 | None:intergenic |
| AAAATTCAAATAACAGAACA+TGG | 0.608055 | 1_4:+62771437 | None:intergenic |
| CACTTGACAAAGCCTGAAGT+GGG | 0.609676 | 1_4:-62773492 | Msa0176390:CDS |
| AGATGAAGATGAAGATAGTG+AGG | 0.612516 | 1_4:+62775134 | None:intergenic |
| GTCAAAACTCCTGAGAAGGA+AGG | 0.621009 | 1_4:-62774132 | Msa0176390:CDS |
| ATCCAGCAAGAAATTTGATG+TGG | 0.622717 | 1_4:-62772229 | Msa0176390:CDS |
| TTCGAAAGCACATAGAACCA+TGG | 0.623227 | 1_4:-62772495 | Msa0176390:CDS |
| CACAGGTCCCAGGAGCTACA+GGG | 0.625211 | 1_4:-62771664 | Msa0176390:intron |
| GTGATGTCAACATACTGCCC+GGG | 0.631463 | 1_4:+62773360 | None:intergenic |
| AGATGCCAGGGAGAATGGGT+GGG | 0.644345 | 1_4:-62772292 | Msa0176390:CDS |
| GGTGTTATAGCTGTAAAATG+TGG | 0.647527 | 1_4:-62774234 | Msa0176390:CDS |
| TCCCCAAGATCAGCAACCAA+AGG | 0.647605 | 1_4:+62771536 | None:intergenic |
| GACATCACAGGAATCACCAA+AGG | 0.651363 | 1_4:-62773345 | Msa0176390:CDS |
| CAATGTTGTCATCTACCCAA+AGG | 0.657641 | 1_4:+62774163 | None:intergenic |
| TTAAAGGTAGAAAGATGCCA+GGG | 0.664670 | 1_4:-62772304 | Msa0176390:CDS |
| GATGAAGATGAAGATAGTGA+GGG | 0.666326 | 1_4:+62775135 | None:intergenic |
| GAAGATGAAGATAGTGAGGG+CGG | 0.674571 | 1_4:+62775138 | None:intergenic |
| TCCAGCAAGAAATTTGATGT+GGG | 0.677547 | 1_4:-62772228 | Msa0176390:CDS |
| AAGAAGTATGGATTTCATGG+AGG | 0.684184 | 1_4:-62772536 | Msa0176390:CDS |
| ATCGCGGCAGTGGTGCCACG+GGG | 0.726950 | 1_4:+62774334 | None:intergenic |
| TCGTCTTCGACAATTCCCCG+TGG | 0.741512 | 1_4:-62774349 | Msa0176390:CDS |
| ACTGCTCATTGGGATAAATG+GGG | 0.750912 | 1_4:-62774207 | Msa0176390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATATAAATTGGTAATT+TGG | - | chr1_4:62771480-62771499 | Msa0176390:three_prime_UTR | 10.0% |
| !! | TTTATTAAATTTGTATTTGT+AGG | - | chr1_4:62773369-62773388 | Msa0176390:CDS | 10.0% |
| !! | TCTTAATTCATTTGAAAATT+AGG | - | chr1_4:62771728-62771747 | Msa0176390:intron | 15.0% |
| !!! | TCTTTTAATTCCATATATAT+AGG | - | chr1_4:62772065-62772084 | Msa0176390:intron | 15.0% |
| !! | AATGTTTATAATGAATAATG+CGG | + | chr1_4:62772510-62772529 | None:intergenic | 15.0% |
| !! | GTTTATAATGAGTTATTAAA+TGG | - | chr1_4:62772817-62772836 | Msa0176390:intron | 15.0% |
| !! | GACAGAAATTATTATTTATA+TGG | + | chr1_4:62773211-62773230 | None:intergenic | 15.0% |
| !! | TTGATTACATTAGTTATATT+AGG | - | chr1_4:62773438-62773457 | Msa0176390:CDS | 15.0% |
| !! | TTGAACAAAACAATAAATAA+TGG | + | chr1_4:62773559-62773578 | None:intergenic | 15.0% |
| !! | CTACTAAATTAAATACAAAA+TGG | + | chr1_4:62774705-62774724 | None:intergenic | 15.0% |
| !! | TCTGCACAAATTATATAAAT+TGG | - | chr1_4:62771472-62771491 | Msa0176390:three_prime_UTR | 20.0% |
| !!! | TATAAATTGGTAATTTGGTT+AGG | - | chr1_4:62771485-62771504 | Msa0176390:three_prime_UTR | 20.0% |
| !!! | TTTAGTTTATCTAGTTAAAG+AGG | - | chr1_4:62771547-62771566 | Msa0176390:CDS | 20.0% |
| !! | ACAGTAAGTTGTTAAAATAT+GGG | + | chr1_4:62771847-62771866 | None:intergenic | 20.0% |
| !! | ATAGTAAGTAGATAAACTTA+AGG | + | chr1_4:62771879-62771898 | None:intergenic | 20.0% |
| !! | ACTTTATGGATAATTCAAAA+AGG | + | chr1_4:62771963-62771982 | None:intergenic | 20.0% |
| !! | TATATATAGAAGACATATCT+AGG | + | chr1_4:62772874-62772893 | None:intergenic | 20.0% |
| !! | ACAAAAAAACAATCATCTTA+GGG | + | chr1_4:62773409-62773428 | None:intergenic | 20.0% |
| !! | TACAAAAAAACAATCATCTT+AGG | + | chr1_4:62773410-62773429 | None:intergenic | 20.0% |
| !!! | AAGATGATTGTTTTTTTGTA+AGG | - | chr1_4:62773410-62773429 | Msa0176390:CDS | 20.0% |
| !!! | AGATGATTGTTTTTTTGTAA+GGG | - | chr1_4:62773411-62773430 | Msa0176390:CDS | 20.0% |
| !! | TTATTATATCATTAGGATTC+AGG | + | chr1_4:62773508-62773527 | None:intergenic | 20.0% |
| !! | TGTCAACTTATTATATCATT+AGG | + | chr1_4:62773515-62773534 | None:intergenic | 20.0% |
| !! | CAAATTCAATCATGTATTAT+AGG | - | chr1_4:62773533-62773552 | Msa0176390:intron | 20.0% |
| !! | GCAGAAAAATAAACAATAAA+TGG | + | chr1_4:62773773-62773792 | None:intergenic | 20.0% |
| !!! | TACACGTTTTTTTTTTTGAA+TGG | - | chr1_4:62773862-62773881 | Msa0176390:intron | 20.0% |
| !! | AAAGAACAGTAAAAAATGTA+CGG | - | chr1_4:62774208-62774227 | Msa0176390:CDS | 20.0% |
| !! | TTCACATTAATTTATGAACT+TGG | - | chr1_4:62774303-62774322 | Msa0176390:CDS | 20.0% |
| !!! | TTTTGATGTACAAAATTTCT+TGG | + | chr1_4:62774640-62774659 | None:intergenic | 20.0% |
| !! | AAAATTCAAATAACAGAACA+TGG | + | chr1_4:62775039-62775058 | None:intergenic | 20.0% |
| !!! | GTTATTTGAATTTTGAACAT+AGG | - | chr1_4:62775045-62775064 | Msa0176390:intron | 20.0% |
| !!! | CAAATAATTTGGCTTAAAAA+AGG | + | chr1_4:62775230-62775249 | None:intergenic | 20.0% |
| !!! | CTTTTTTAAGCCAAATTATT+TGG | - | chr1_4:62775228-62775247 | Msa0176390:five_prime_UTR | 20.0% |
| !! | TTTTTGCTTCTTCATGATTT+TGG | - | chr1_4:62771440-62771459 | Msa0176390:three_prime_UTR | 25.0% |
| ! | TACTCTATCAAATTCTAATG+TGG | + | chr1_4:62771647-62771666 | None:intergenic | 25.0% |
| ! | AGTAATATGTCATTGAATCA+AGG | - | chr1_4:62771663-62771682 | Msa0176390:intron | 25.0% |
| ! | ATAGTAGGTGGTTAAATATA+GGG | + | chr1_4:62771814-62771833 | None:intergenic | 25.0% |
| ! | CAGTAAGTTGTTAAAATATG+GGG | + | chr1_4:62771846-62771865 | None:intergenic | 25.0% |
| ! | GACAGTAAGTTGTTAAAATA+TGG | + | chr1_4:62771848-62771867 | None:intergenic | 25.0% |
| !! | GTCCTTTAAAGAATATGATA+GGG | + | chr1_4:62771911-62771930 | None:intergenic | 25.0% |
| !! | AGTCCTTTAAAGAATATGAT+AGG | + | chr1_4:62771912-62771931 | None:intergenic | 25.0% |
| ! | TTTGAATTATCCATAAAGTC+AGG | - | chr1_4:62771964-62771983 | Msa0176390:intron | 25.0% |
| ! | TTGAATTATCCATAAAGTCA+GGG | - | chr1_4:62771965-62771984 | Msa0176390:intron | 25.0% |
| ! | AATTCCAATTTCTATCCTTT+GGG | - | chr1_4:62772295-62772314 | Msa0176390:CDS | 25.0% |
| ! | ACAGTAAAAAAAGCAGAATA+TGG | - | chr1_4:62772761-62772780 | Msa0176390:intron | 25.0% |
| ! | TTGAATTTCACCAATCTAAT+CGG | + | chr1_4:62772796-62772815 | None:intergenic | 25.0% |
| !!! | ATGCTTTGTTTTAGTTAGAT+TGG | - | chr1_4:62772936-62772955 | Msa0176390:intron | 25.0% |
| !! | TATGAAAGTATGTAATACGA+GGG | + | chr1_4:62773181-62773200 | None:intergenic | 25.0% |
| !! | ATATGAAAGTATGTAATACG+AGG | + | chr1_4:62773182-62773201 | None:intergenic | 25.0% |
| ! | ATTTACTTCTAGACAATCAT+TGG | - | chr1_4:62773600-62773619 | Msa0176390:intron | 25.0% |
| ! | AAATTATATGTTCTGTTTCC+AGG | - | chr1_4:62773906-62773925 | Msa0176390:intron | 25.0% |
| ! | AATTATATGTTCTGTTTCCA+GGG | - | chr1_4:62773907-62773926 | Msa0176390:intron | 25.0% |
| ! | AACTAAGAATACTAATCTGA+AGG | + | chr1_4:62774045-62774064 | None:intergenic | 25.0% |
| ! | AAGAACAGTAAAAAATGTAC+GGG | - | chr1_4:62774209-62774228 | Msa0176390:CDS | 25.0% |
| ! | AACATGTAAAAACAATTACC+TGG | + | chr1_4:62774278-62774297 | None:intergenic | 25.0% |
| ! | TAGCTCAATTATTCATTAAC+TGG | - | chr1_4:62774722-62774741 | Msa0176390:intron | 25.0% |
| !! | GGCAAAAATATTTGAAATCT+CGG | - | chr1_4:62774743-62774762 | Msa0176390:intron | 25.0% |
| ! | CTTTAATCAGTAACCATAAA+TGG | + | chr1_4:62774970-62774989 | None:intergenic | 25.0% |
| !! | ATTTGAATTTTGAACATAGG+TGG | - | chr1_4:62775048-62775067 | Msa0176390:intron | 25.0% |
| ! | TATCTAGTTAAAGAGGCTTT+TGG | - | chr1_4:62771554-62771573 | Msa0176390:CDS | 30.0% |
| GAAAGCTTAAACTCTCAAAT+GGG | + | chr1_4:62771710-62771729 | None:intergenic | 30.0% | |
| AGAAAGCTTAAACTCTCAAA+TGG | + | chr1_4:62771711-62771730 | None:intergenic | 30.0% | |
| ACTCTGTTAAACTCTCAAAT+TGG | - | chr1_4:62771787-62771806 | Msa0176390:intron | 30.0% | |
| GATAGTAGGTGGTTAAATAT+AGG | + | chr1_4:62771815-62771834 | None:intergenic | 30.0% | |
| GTCCCTATCATATTCTTTAA+AGG | - | chr1_4:62771906-62771925 | Msa0176390:intron | 30.0% | |
| AAAATTCATCCCTGACTTTA+TGG | + | chr1_4:62771977-62771996 | None:intergenic | 30.0% | |
| GTACGAAAATGAAAGCAATT+TGG | - | chr1_4:62772019-62772038 | Msa0176390:intron | 30.0% | |
| CATGGCAAAACCTATATATA+TGG | + | chr1_4:62772078-62772097 | None:intergenic | 30.0% | |
| ACATCTGAACTAAAAAATCG+CGG | + | chr1_4:62772158-62772177 | None:intergenic | 30.0% | |
| GAATTCCAATTTCTATCCTT+TGG | - | chr1_4:62772294-62772313 | Msa0176390:CDS | 30.0% | |
| AATCCACATGAAACTCATTA+GGG | + | chr1_4:62772420-62772439 | None:intergenic | 30.0% | |
| TAATCCACATGAAACTCATT+AGG | + | chr1_4:62772421-62772440 | None:intergenic | 30.0% | |
| TTGTGTAGTTGATTGGATTT+CGG | + | chr1_4:62772539-62772558 | None:intergenic | 30.0% | |
| CGAAAATTTGTGTAGTTGAT+TGG | + | chr1_4:62772546-62772565 | None:intergenic | 30.0% | |
| GATTGCATAGATACAAATTC+TGG | - | chr1_4:62772664-62772683 | Msa0176390:intron | 30.0% | |
| ACTTGATCCTTAACATAGTA+TGG | - | chr1_4:62772707-62772726 | Msa0176390:intron | 30.0% | |
| ATTATCGCCATACTATGTTA+AGG | + | chr1_4:62772717-62772736 | None:intergenic | 30.0% | |
| !!! | TGTTTTAGTTAGATTGGTTG+TGG | - | chr1_4:62772942-62772961 | Msa0176390:intron | 30.0% |
| TACATGTTTATGCTTGTATG+TGG | - | chr1_4:62773254-62773273 | Msa0176390:intron | 30.0% | |
| CGTTTGTTTATTGACATGAT+TGG | - | chr1_4:62773327-62773346 | Msa0176390:intron | 30.0% | |
| TTGTCATTCATGTATGATTG+CGG | - | chr1_4:62773805-62773824 | Msa0176390:intron | 30.0% | |
| AAAAAAACGTGTAACTGACA+AGG | + | chr1_4:62773855-62773874 | None:intergenic | 30.0% | |
| !!! | TTTTTTGAATGGCAGTTACA+CGG | - | chr1_4:62773873-62773892 | Msa0176390:intron | 30.0% |
| ! | ATGAAGAAGTATGGATTTCA+TGG | - | chr1_4:62773934-62773953 | Msa0176390:intron | 30.0% |
| ATTTATGTTTCTCACTGTTC+AGG | - | chr1_4:62774143-62774162 | Msa0176390:CDS | 30.0% | |
| !! | AATCACTTGATTTGTGTATG+AGG | + | chr1_4:62774358-62774377 | None:intergenic | 30.0% |
| GGATGAATCAATCATATTCA+TGG | - | chr1_4:62774409-62774428 | Msa0176390:intron | 30.0% | |
| !! | GGGTAAGTAAAGTTTTAACA+TGG | + | chr1_4:62774445-62774464 | None:intergenic | 30.0% |
| ! | TTCTCTTGATGATATTAGTC+AGG | + | chr1_4:62774666-62774685 | None:intergenic | 30.0% |
| TAATATCATCAAGAGAACGA+TGG | - | chr1_4:62774669-62774688 | Msa0176390:intron | 30.0% | |
| TTGAAATCTCGGATTTATCT+CGG | - | chr1_4:62774754-62774773 | Msa0176390:intron | 30.0% | |
| AATGCTTATTCCTCTTTGTA+TGG | - | chr1_4:62774777-62774796 | Msa0176390:intron | 30.0% | |
| TTCAGATGATATGAAACCTT+TGG | - | chr1_4:62774921-62774940 | Msa0176390:intron | 30.0% | |
| TAAAGAGATAGTTCCACAAA+TGG | - | chr1_4:62774985-62775004 | Msa0176390:intron | 30.0% | |
| AAAGAGATAGTTCCACAAAT+GGG | - | chr1_4:62774986-62775005 | Msa0176390:intron | 30.0% | |
| !! | CTAGTTGTTATTTGTGACTT+AGG | - | chr1_4:62775119-62775138 | Msa0176390:five_prime_UTR | 30.0% |
| !! | TTGTTATTTGTGACTTAGGA+TGG | - | chr1_4:62775123-62775142 | Msa0176390:five_prime_UTR | 30.0% |
| ! | TGTTATTTGTGACTTAGGAT+GGG | - | chr1_4:62775124-62775143 | Msa0176390:five_prime_UTR | 30.0% |
| GGCTTAAAAAAGGAAACAAT+TGG | + | chr1_4:62775220-62775239 | None:intergenic | 30.0% | |
| ATTGCTCTCAATACCCATTT+CGG | + | chr1_4:62771241-62771260 | None:intergenic | 35.0% | |
| ! | ATGGACAAAAGGGTATAGTA+GGG | + | chr1_4:62771291-62771310 | None:intergenic | 35.0% |
| ! | TATACCCTTTTGTCCATCTA+GGG | - | chr1_4:62771294-62771313 | Msa0176390:three_prime_UTR | 35.0% |
| AAAACCCTAGATGGACAAAA+GGG | + | chr1_4:62771301-62771320 | None:intergenic | 35.0% | |
| !! | TTTTGTCCATCTAGGGTTTT+GGG | - | chr1_4:62771301-62771320 | Msa0176390:intron | 35.0% |
| GATGAAGATGAAGATAGTGA+GGG | + | chr1_4:62771341-62771360 | None:intergenic | 35.0% | |
| AGATGAAGATGAAGATAGTG+AGG | + | chr1_4:62771342-62771361 | None:intergenic | 35.0% | |
| AGTTACAAGCAAATCAATCG+AGG | + | chr1_4:62771412-62771431 | None:intergenic | 35.0% | |
| !! | TGAGTTTGTTATCCTGCATT+TGG | - | chr1_4:62771519-62771538 | Msa0176390:CDS | 35.0% |
| AACTAAACTACTCCAAATGC+AGG | + | chr1_4:62771534-62771553 | None:intergenic | 35.0% | |
| TTGAGAGTTTAACAGAGTCA+AGG | + | chr1_4:62771785-62771804 | None:intergenic | 35.0% | |
| TGTGACTACAATTTAAGAGC+CGG | - | chr1_4:62771934-62771953 | Msa0176390:intron | 35.0% | |
| GGATAATTCAAAAAGGTCTC+CGG | + | chr1_4:62771956-62771975 | None:intergenic | 35.0% | |
| ! | ATATATAGGTTTTGCCATGC+TGG | - | chr1_4:62772079-62772098 | Msa0176390:intron | 35.0% |
| !!! | GCGATTTTTTAGTTCAGATG+TGG | - | chr1_4:62772157-62772176 | Msa0176390:intron | 35.0% |
| ACACCAAATTCACAAAGAAC+TGG | - | chr1_4:62772218-62772237 | Msa0176390:CDS | 35.0% | |
| ACACCAGTTCTTTGTGAATT+TGG | + | chr1_4:62772224-62772243 | None:intergenic | 35.0% | |
| ! | GGTGTTATAGCTGTAAAATG+TGG | - | chr1_4:62772239-62772258 | Msa0176390:CDS | 35.0% |
| TCTACCCAAAGGATAGAAAT+TGG | + | chr1_4:62772302-62772321 | None:intergenic | 35.0% | |
| TATCCCTAATGAGTTTCATG+TGG | - | chr1_4:62772414-62772433 | Msa0176390:intron | 35.0% | |
| TGCGGAGTAACTAAACTAAA+AGG | + | chr1_4:62772492-62772511 | None:intergenic | 35.0% | |
| CATAGTATGGCGATAATATC+TGG | - | chr1_4:62772720-62772739 | Msa0176390:intron | 35.0% | |
| GCGATAATATCTGGTTAGAT+TGG | - | chr1_4:62772729-62772748 | Msa0176390:intron | 35.0% | |
| ACATTAAGTGATGTACCAAC+AGG | + | chr1_4:62773080-62773099 | None:intergenic | 35.0% | |
| TGCTATTATATAGACACGTG+CGG | + | chr1_4:62773282-62773301 | None:intergenic | 35.0% | |
| GAGTGGCAACTTATTGTTAT+TGG | + | chr1_4:62773477-62773496 | None:intergenic | 35.0% | |
| ! | TTTTTGAATGGCAGTTACAC+GGG | - | chr1_4:62773874-62773893 | Msa0176390:intron | 35.0% |
| ! | AAGAAGTATGGATTTCATGG+AGG | - | chr1_4:62773937-62773956 | Msa0176390:intron | 35.0% |
| TTTAAAGGTAGAAAGATGCC+AGG | - | chr1_4:62774168-62774187 | Msa0176390:CDS | 35.0% | |
| TTAAAGGTAGAAAGATGCCA+GGG | - | chr1_4:62774169-62774188 | Msa0176390:CDS | 35.0% | |
| ATCCAGCAAGAAATTTGATG+TGG | - | chr1_4:62774244-62774263 | Msa0176390:CDS | 35.0% | |
| TCCAGCAAGAAATTTGATGT+GGG | - | chr1_4:62774245-62774264 | Msa0176390:CDS | 35.0% | |
| AGAAATTTGATGTGGGTGAA+AGG | - | chr1_4:62774252-62774271 | Msa0176390:CDS | 35.0% | |
| ATTTATGAACTTGGAGCTCT+AGG | - | chr1_4:62774312-62774331 | Msa0176390:CDS | 35.0% | |
| TTTATGAACTTGGAGCTCTA+GGG | - | chr1_4:62774313-62774332 | Msa0176390:CDS | 35.0% | |
| !! | GGTTGATGAGTTTGAGTTAA+AGG | - | chr1_4:62774388-62774407 | Msa0176390:exon | 35.0% |
| TAATCCGGAGTTCAATCAAA+GGG | + | chr1_4:62774465-62774484 | None:intergenic | 35.0% | |
| TCATTAATGACCAAGTGTCT+TGG | + | chr1_4:62774535-62774554 | None:intergenic | 35.0% | |
| ! | AAAGGAAGTATAGATGTGTC+AGG | + | chr1_4:62774871-62774890 | None:intergenic | 35.0% |
| TCATCTGAATCTTCATCTTC+CGG | + | chr1_4:62774910-62774929 | None:intergenic | 35.0% | |
| AACTAGAACTTATCGAGTGA+AGG | + | chr1_4:62775105-62775124 | None:intergenic | 35.0% | |
| GTTATTTGTGACTTAGGATG+GGG | - | chr1_4:62775125-62775144 | Msa0176390:five_prime_UTR | 35.0% | |
| TTATTTGTGACTTAGGATGG+GGG | - | chr1_4:62775126-62775145 | Msa0176390:five_prime_UTR | 35.0% | |
| AAGGTCAGTGCCAAATAATT+TGG | + | chr1_4:62775241-62775260 | None:intergenic | 35.0% | |
| ! | AAAAGGGTATAGTAGGGTGT+TGG | + | chr1_4:62771285-62771304 | None:intergenic | 40.0% |
| ! | GATGGACAAAAGGGTATAGT+AGG | + | chr1_4:62771292-62771311 | None:intergenic | 40.0% |
| ! | CTATACCCTTTTGTCCATCT+AGG | - | chr1_4:62771293-62771312 | Msa0176390:three_prime_UTR | 40.0% |
| CAAAACCCTAGATGGACAAA+AGG | + | chr1_4:62771302-62771321 | None:intergenic | 40.0% | |
| !! | CTTTTGTCCATCTAGGGTTT+TGG | - | chr1_4:62771300-62771319 | Msa0176390:intron | 40.0% |
| AATGAACCCAAAACCCTAGA+TGG | + | chr1_4:62771310-62771329 | None:intergenic | 40.0% | |
| !! | AACAGAGTCAAGGACTAGTT+TGG | + | chr1_4:62771775-62771794 | None:intergenic | 40.0% |
| ! | ATGGGGACTGAATTGATAGT+AGG | + | chr1_4:62771829-62771848 | None:intergenic | 40.0% |
| GTTCAGATGTGGAGACTATA+AGG | - | chr1_4:62772168-62772187 | Msa0176390:intron | 40.0% | |
| !! | GAATTTGGTGTCATCACACT+AGG | + | chr1_4:62772209-62772228 | None:intergenic | 40.0% |
| AATGTGGAATGACTGCTCAT+TGG | - | chr1_4:62772255-62772274 | Msa0176390:CDS | 40.0% | |
| ATGTGGAATGACTGCTCATT+GGG | - | chr1_4:62772256-62772275 | Msa0176390:CDS | 40.0% | |
| TGACTGCTCATTGGGATAAA+TGG | - | chr1_4:62772264-62772283 | Msa0176390:CDS | 40.0% | |
| GACTGCTCATTGGGATAAAT+GGG | - | chr1_4:62772265-62772284 | Msa0176390:CDS | 40.0% | |
| ACTGCTCATTGGGATAAATG+GGG | - | chr1_4:62772266-62772285 | Msa0176390:CDS | 40.0% | |
| CAATGTTGTCATCTACCCAA+AGG | + | chr1_4:62772313-62772332 | None:intergenic | 40.0% | |
| AGATGACAACATTGTCTCTC+AGG | - | chr1_4:62772319-62772338 | Msa0176390:intron | 40.0% | |
| ATTCAGCTTAGAGTTACTCC+TGG | - | chr1_4:62772844-62772863 | Msa0176390:intron | 40.0% | |
| AAGACATATCTAGGTACTCC+AGG | + | chr1_4:62772865-62772884 | None:intergenic | 40.0% | |
| TCTTGAAGCTTCCTCTTCAT+CGG | + | chr1_4:62773029-62773048 | None:intergenic | 40.0% | |
| !! | AATGTTCGCCATTTTGTTCC+CGG | - | chr1_4:62773095-62773114 | Msa0176390:intron | 40.0% |
| ACAGGAATCACCAAAGGAAA+AGG | - | chr1_4:62773134-62773153 | Msa0176390:intron | 40.0% | |
| ! | CACCAAAGGAAAAGGTTTTC+AGG | - | chr1_4:62773142-62773161 | Msa0176390:intron | 40.0% |
| ! | CACCTGAAAACCTTTTCCTT+TGG | + | chr1_4:62773147-62773166 | None:intergenic | 40.0% |
| GCTATTATATAGACACGTGC+GGG | + | chr1_4:62773281-62773300 | None:intergenic | 40.0% | |
| !! | TAGCAGTTGAGTTGAATGCA+TGG | - | chr1_4:62773297-62773316 | Msa0176390:intron | 40.0% |
| AATCTTGCACGTACAAGTTC+AGG | - | chr1_4:62773650-62773669 | Msa0176390:intron | 40.0% | |
| TTCAAATTTCCAGAGAGGTC+AGG | + | chr1_4:62773715-62773734 | None:intergenic | 40.0% | |
| TGCGTTTCAAATTTCCAGAG+AGG | + | chr1_4:62773720-62773739 | None:intergenic | 40.0% | |
| ! | AACGCAAAATGTTGAGTTGC+AGG | - | chr1_4:62773734-62773753 | Msa0176390:intron | 40.0% |
| CATACTTCTTCATTACACCC+TGG | + | chr1_4:62773927-62773946 | None:intergenic | 40.0% | |
| CAGGGTGTAATGAAGAAGTA+TGG | - | chr1_4:62773925-62773944 | Msa0176390:intron | 40.0% | |
| ATGTGCTTTCGAATTCCCAT+GGG | + | chr1_4:62773971-62773990 | None:intergenic | 40.0% | |
| TATGTGCTTTCGAATTCCCA+TGG | + | chr1_4:62773972-62773991 | None:intergenic | 40.0% | |
| ! | TTCGAAAGCACATAGAACCA+TGG | - | chr1_4:62773978-62773997 | Msa0176390:intron | 40.0% |
| ! | TCGAAAGCACATAGAACCAT+GGG | - | chr1_4:62773979-62773998 | Msa0176390:intron | 40.0% |
| AAGTATTCCTGTAGAACCCA+TGG | + | chr1_4:62773998-62774017 | None:intergenic | 40.0% | |
| ATGGGTTCTACAGGAATACT+TGG | - | chr1_4:62773997-62774016 | Msa0176390:intron | 40.0% | |
| AGGAATACTTGGTCCTTGTA+AGG | - | chr1_4:62774008-62774027 | Msa0176390:intron | 40.0% | |
| ATACTTGGTCCTTGTAAGGT+TGG | - | chr1_4:62774012-62774031 | Msa0176390:intron | 40.0% | |
| CTCACTGTTCAGGTCTTTAA+AGG | - | chr1_4:62774153-62774172 | Msa0176390:CDS | 40.0% | |
| ACCCACATCAAATTTCTTGC+TGG | + | chr1_4:62774249-62774268 | None:intergenic | 40.0% | |
| ! | TTATGAACTTGGAGCTCTAG+GGG | - | chr1_4:62774314-62774333 | Msa0176390:CDS | 40.0% |
| CTTACCCTTTGATTGAACTC+CGG | - | chr1_4:62774458-62774477 | Msa0176390:intron | 40.0% | |
| GTAATCCGGAGTTCAATCAA+AGG | + | chr1_4:62774466-62774485 | None:intergenic | 40.0% | |
| TGATTGAACTCCGGATTACT+AGG | - | chr1_4:62774467-62774486 | Msa0176390:intron | 40.0% | |
| GATTGAACTCCGGATTACTA+GGG | - | chr1_4:62774468-62774487 | Msa0176390:intron | 40.0% | |
| ! | CCAAGTGTCTTGGTTGATAT+TGG | + | chr1_4:62774525-62774544 | None:intergenic | 40.0% |
| CCAATATCAACCAAGACACT+TGG | - | chr1_4:62774522-62774541 | Msa0176390:intron | 40.0% | |
| ACTGCAAATGTGCAAATGGT+GGG | + | chr1_4:62774583-62774602 | None:intergenic | 40.0% | |
| AACTGCAAATGTGCAAATGG+TGG | + | chr1_4:62774584-62774603 | None:intergenic | 40.0% | |
| CCATTTGCACATTTGCAGTT+CGG | - | chr1_4:62774584-62774603 | Msa0176390:intron | 40.0% | |
| TATCATCAAGAGAACGATGG+TGG | - | chr1_4:62774672-62774691 | Msa0176390:intron | 40.0% | |
| TTTCCCAACTTACTTTGTGC+CGG | - | chr1_4:62774888-62774907 | Msa0176390:intron | 40.0% | |
| AAACCTTTGGTTGCTGATCT+TGG | - | chr1_4:62774934-62774953 | Msa0176390:intron | 40.0% | |
| AACCTTTGGTTGCTGATCTT+GGG | - | chr1_4:62774935-62774954 | Msa0176390:intron | 40.0% | |
| CTTGCACAAAAACCCATTTG+TGG | + | chr1_4:62775001-62775020 | None:intergenic | 40.0% | |
| !! | CACAAATGGGTTTTTGTGCA+AGG | - | chr1_4:62774999-62775018 | Msa0176390:intron | 40.0% |
| CCAAGTCTACACTTATTTGC+AGG | + | chr1_4:62775173-62775192 | None:intergenic | 40.0% | |
| CCTGCAAATAAGTGTAGACT+TGG | - | chr1_4:62775170-62775189 | Msa0176390:five_prime_UTR | 40.0% | |
| CTCTCAATACCCATTTCGGT+GGG | + | chr1_4:62771237-62771256 | None:intergenic | 45.0% | |
| GAAGATGAAGATAGTGAGGG+CGG | + | chr1_4:62771338-62771357 | None:intergenic | 45.0% | |
| TCATCTTCGCATCTCAACTC+AGG | - | chr1_4:62771356-62771375 | Msa0176390:intron | 45.0% | |
| GAGGCAGAATAGAAAGAGCA+TGG | + | chr1_4:62771393-62771412 | None:intergenic | 45.0% | |
| TTCCACTAAGACCTTTGCAC+TGG | - | chr1_4:62771577-62771596 | Msa0176390:CDS | 45.0% | |
| !! | AGAGTCAAGGACTAGTTTGG+TGG | + | chr1_4:62771772-62771791 | None:intergenic | 45.0% |
| ! | GGGACTGAATTGATAGTAGG+TGG | + | chr1_4:62771826-62771845 | None:intergenic | 45.0% |
| ACCTCTTGAAAATGCCAGCA+TGG | + | chr1_4:62772096-62772115 | None:intergenic | 45.0% | |
| GAACTAAAAAATCGCGGCAG+TGG | + | chr1_4:62772152-62772171 | None:intergenic | 45.0% | |
| TCAGGTCAAAACTCCTGAGA+AGG | - | chr1_4:62772337-62772356 | Msa0176390:intron | 45.0% | |
| GTCAAAACTCCTGAGAAGGA+AGG | - | chr1_4:62772341-62772360 | Msa0176390:intron | 45.0% | |
| GAACAATAGCCTTCCTTCTC+AGG | + | chr1_4:62772353-62772372 | None:intergenic | 45.0% | |
| GCGACAGTATCCGATTAGAT+TGG | - | chr1_4:62772783-62772802 | Msa0176390:intron | 45.0% | |
| ! | GATTGGTTGTGGACAGAAGA+AGG | - | chr1_4:62772953-62772972 | Msa0176390:intron | 45.0% |
| ACACTTGACAAAGCCTGAAG+TGG | - | chr1_4:62772980-62772999 | Msa0176390:intron | 45.0% | |
| CACTTGACAAAGCCTGAAGT+GGG | - | chr1_4:62772981-62773000 | Msa0176390:intron | 45.0% | |
| !! | AGCCTGAAGTGGGTCATTTT+AGG | - | chr1_4:62772991-62773010 | Msa0176390:intron | 45.0% |
| !! | GCCTGAAGTGGGTCATTTTA+GGG | - | chr1_4:62772992-62773011 | Msa0176390:intron | 45.0% |
| ! | TCAAGAGTTTCGAGTGACAG+AGG | - | chr1_4:62773043-62773062 | Msa0176390:intron | 45.0% |
| !! | ATGTTCGCCATTTTGTTCCC+GGG | - | chr1_4:62773096-62773115 | Msa0176390:intron | 45.0% |
| TGTGATGTCAACATACTGCC+CGG | + | chr1_4:62773117-62773136 | None:intergenic | 45.0% | |
| GACATCACAGGAATCACCAA+AGG | - | chr1_4:62773128-62773147 | Msa0176390:intron | 45.0% | |
| GCACGTACAAGTTCAGGTAA+TGG | - | chr1_4:62773656-62773675 | Msa0176390:intron | 45.0% | |
| CCAGAGAGGTCAGGTAAAAT+GGG | + | chr1_4:62773706-62773725 | None:intergenic | 45.0% | |
| TCCAGAGAGGTCAGGTAAAA+TGG | + | chr1_4:62773707-62773726 | None:intergenic | 45.0% | |
| ! | TGTTGAGTTGCAGGCTTTCT+AGG | - | chr1_4:62773743-62773762 | Msa0176390:intron | 45.0% |
| ! | GTTGAGTTGCAGGCTTTCTA+GGG | - | chr1_4:62773744-62773763 | Msa0176390:intron | 45.0% |
| ! | TTGAGTTGCAGGCTTTCTAG+GGG | - | chr1_4:62773745-62773764 | Msa0176390:intron | 45.0% |
| CATAGAACCATGGGTTCTAC+AGG | - | chr1_4:62773988-62774007 | Msa0176390:intron | 45.0% | |
| TTGGTCCTTGTAAGGTTGGA+TGG | - | chr1_4:62774016-62774035 | Msa0176390:intron | 45.0% | |
| TAGAAAGATGCCAGGGAGAA+TGG | - | chr1_4:62774176-62774195 | Msa0176390:CDS | 45.0% | |
| AGAAAGATGCCAGGGAGAAT+GGG | - | chr1_4:62774177-62774196 | Msa0176390:CDS | 45.0% | |
| ATCAAGTGATTGAGCTCGAG+CGG | - | chr1_4:62774367-62774386 | Msa0176390:CDS | 45.0% | |
| ! | TTACTAGGGCTCCTTCCTTT+TGG | - | chr1_4:62774482-62774501 | Msa0176390:intron | 45.0% |
| ! | TACTAGGGCTCCTTCCTTTT+GGG | - | chr1_4:62774483-62774502 | Msa0176390:intron | 45.0% |
| !! | TGATATTGGCCTTGACTCTC+CGG | + | chr1_4:62774511-62774530 | None:intergenic | 45.0% |
| CCGAACTGCAAATGTGCAAA+TGG | + | chr1_4:62774587-62774606 | None:intergenic | 45.0% | |
| GTTGTGCACACCATACAAAG+AGG | + | chr1_4:62774790-62774809 | None:intergenic | 45.0% | |
| TTGTATGGTGTGCACAACAC+AGG | - | chr1_4:62774792-62774811 | Msa0176390:intron | 45.0% | |
| ! | GGCACAAAGTAAGTTGGGAA+AGG | + | chr1_4:62774889-62774908 | None:intergenic | 45.0% |
| CTTCCGGCACAAAGTAAGTT+GGG | + | chr1_4:62774894-62774913 | None:intergenic | 45.0% | |
| TCTTCCGGCACAAAGTAAGT+TGG | + | chr1_4:62774895-62774914 | None:intergenic | 45.0% | |
| ACCTTTGGTTGCTGATCTTG+GGG | - | chr1_4:62774936-62774955 | Msa0176390:intron | 45.0% | |
| TGGGGATGTGGATCCATTTA+TGG | - | chr1_4:62774954-62774973 | Msa0176390:intron | 45.0% | |
| GCTCTCAATACCCATTTCGG+TGG | + | chr1_4:62771238-62771257 | None:intergenic | 50.0% | |
| AGCCAGTGCAAAGGTCTTAG+TGG | + | chr1_4:62771582-62771601 | None:intergenic | 50.0% | |
| TTTGCAGCAAGCCAGTGCAA+AGG | + | chr1_4:62771591-62771610 | None:intergenic | 50.0% | |
| !! | GCCATGCTGGCATTTTCAAG+AGG | - | chr1_4:62772092-62772111 | Msa0176390:intron | 50.0% |
| !! | GCTGGCATTTTCAAGAGGTG+TGG | - | chr1_4:62772097-62772116 | Msa0176390:intron | 50.0% |
| GGAAGGCTATTGTTCTCTCC+AGG | - | chr1_4:62772358-62772377 | Msa0176390:intron | 50.0% | |
| AGAATGAAGCAGAACGCACC+TGG | + | chr1_4:62772379-62772398 | None:intergenic | 50.0% | |
| GTGCGTTCTGCTTCATTCTC+AGG | - | chr1_4:62772380-62772399 | Msa0176390:intron | 50.0% | |
| GCCCTAAAATGACCCACTTC+AGG | + | chr1_4:62772996-62773015 | None:intergenic | 50.0% | |
| !!! | GTGGGTCATTTTAGGGCTCA+AGG | - | chr1_4:62772999-62773018 | Msa0176390:intron | 50.0% |
| CTCAAGGAGTTCCGATGAAG+AGG | - | chr1_4:62773015-62773034 | Msa0176390:intron | 50.0% | |
| GAGGATGCACTTCTTCCTGT+TGG | - | chr1_4:62773062-62773081 | Msa0176390:intron | 50.0% | |
| CATACTGCCCGGGAACAAAA+TGG | + | chr1_4:62773106-62773125 | None:intergenic | 50.0% | |
| GTGATGTCAACATACTGCCC+GGG | + | chr1_4:62773116-62773135 | None:intergenic | 50.0% | |
| GGGCAGTATGTTGACATCAC+AGG | - | chr1_4:62773116-62773135 | Msa0176390:intron | 50.0% | |
| ! | GGATTCAGGACTCTGAAGAG+TGG | + | chr1_4:62773494-62773513 | None:intergenic | 50.0% |
| ! | CCCATTTTACCTGACCTCTC+TGG | - | chr1_4:62773703-62773722 | Msa0176390:intron | 50.0% |
| TGAGTTGCAGGCTTTCTAGG+GGG | - | chr1_4:62773746-62773765 | Msa0176390:intron | 50.0% | |
| ATGGAGGTTCAGCATCCCAT+GGG | - | chr1_4:62773953-62773972 | Msa0176390:intron | 50.0% | |
| GGACTCCATCCAACCTTACA+AGG | + | chr1_4:62774024-62774043 | None:intergenic | 50.0% | |
| TTTGATGTGGGTGAAAGGCC+AGG | - | chr1_4:62774257-62774276 | Msa0176390:CDS | 50.0% | |
| AGGAAGGAGCCCTAGTAATC+CGG | + | chr1_4:62774480-62774499 | None:intergenic | 50.0% | |
| TTGACTCTCCGGTTCCCAAA+AGG | + | chr1_4:62774500-62774519 | None:intergenic | 50.0% | |
| !! | TTTTGGGAACCGGAGAGTCA+AGG | - | chr1_4:62774499-62774518 | Msa0176390:intron | 50.0% |
| CAAAGTTCCCTGTAGCTCCT+GGG | + | chr1_4:62774819-62774838 | None:intergenic | 50.0% | |
| ACAAAGTTCCCTGTAGCTCC+TGG | + | chr1_4:62774820-62774839 | None:intergenic | 50.0% | |
| TCCCCAAGATCAGCAACCAA+AGG | + | chr1_4:62774940-62774959 | None:intergenic | 50.0% | |
| TGACTTAGGATGGGGGAACA+TGG | - | chr1_4:62775133-62775152 | Msa0176390:five_prime_UTR | 50.0% | |
| !! | GCACTGGCTTGCTGCAAATG+TGG | - | chr1_4:62771593-62771612 | Msa0176390:CDS | 55.0% |
| TCGTCTTCGACAATTCCCCG+TGG | - | chr1_4:62772124-62772143 | Msa0176390:intron | 55.0% | |
| ! | GAGTTGCAGGCTTTCTAGGG+GGG | - | chr1_4:62773747-62773766 | Msa0176390:intron | 55.0% |
| CATGGAGGTTCAGCATCCCA+TGG | - | chr1_4:62773952-62773971 | Msa0176390:intron | 55.0% | |
| AAGATGCCAGGGAGAATGGG+TGG | - | chr1_4:62774180-62774199 | Msa0176390:CDS | 55.0% | |
| AGATGCCAGGGAGAATGGGT+GGG | - | chr1_4:62774181-62774200 | Msa0176390:CDS | 55.0% | |
| !! | GGCTCCTTCCTTTTGGGAAC+CGG | - | chr1_4:62774489-62774508 | Msa0176390:intron | 55.0% |
| CTCTCCGGTTCCCAAAAGGA+AGG | + | chr1_4:62774496-62774515 | None:intergenic | 55.0% | |
| GGTTGCTGATCTTGGGGATG+TGG | - | chr1_4:62774942-62774961 | Msa0176390:intron | 55.0% | |
| ! | AAATCGCGGCAGTGGTGCCA+CGG | + | chr1_4:62772144-62772163 | None:intergenic | 60.0% |
| TGCTTCCCACCCATTCTCCC+TGG | + | chr1_4:62774189-62774208 | None:intergenic | 60.0% | |
| GTGTGCACAACACAGGTCCC+AGG | - | chr1_4:62774799-62774818 | Msa0176390:intron | 60.0% | |
| ACACAGGTCCCAGGAGCTAC+AGG | - | chr1_4:62774808-62774827 | Msa0176390:intron | 60.0% | |
| CACAGGTCCCAGGAGCTACA+GGG | - | chr1_4:62774809-62774828 | Msa0176390:intron | 60.0% | |
| !! | AATCGCGGCAGTGGTGCCAC+GGG | + | chr1_4:62772143-62772162 | None:intergenic | 65.0% |
| !! | ATCGCGGCAGTGGTGCCACG+GGG | + | chr1_4:62772142-62772161 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 62771232 | 62775263 | 62771232 | ID=Msa0176390;Name=Msa0176390 |
| chr1_4 | mRNA | 62771232 | 62775263 | 62771232 | ID=Msa0176390-mRNA-1;Parent=Msa0176390;Name=Msa0176390-mRNA-1;_AED=0.15;_eAED=0.15;_QI=154|1|1|1|0.66|0.42|7|226|294 |
| chr1_4 | exon | 62771232 | 62771313 | 62771232 | ID=Msa0176390-mRNA-1:exon:20212;Parent=Msa0176390-mRNA-1 |
| chr1_4 | exon | 62771364 | 62771681 | 62771364 | ID=Msa0176390-mRNA-1:exon:20211;Parent=Msa0176390-mRNA-1 |
| chr1_4 | exon | 62772217 | 62772330 | 62772217 | ID=Msa0176390-mRNA-1:exon:20210;Parent=Msa0176390-mRNA-1 |
| chr1_4 | exon | 62772466 | 62772567 | 62772466 | ID=Msa0176390-mRNA-1:exon:20209;Parent=Msa0176390-mRNA-1 |
| chr1_4 | exon | 62773332 | 62773541 | 62773332 | ID=Msa0176390-mRNA-1:exon:20208;Parent=Msa0176390-mRNA-1 |
| chr1_4 | exon | 62774116 | 62774408 | 62774116 | ID=Msa0176390-mRNA-1:exon:20207;Parent=Msa0176390-mRNA-1 |
| chr1_4 | exon | 62775118 | 62775263 | 62775118 | ID=Msa0176390-mRNA-1:exon:20206;Parent=Msa0176390-mRNA-1 |
| chr1_4 | five_prime_UTR | 62775118 | 62775263 | 62775118 | ID=Msa0176390-mRNA-1:five_prime_utr;Parent=Msa0176390-mRNA-1 |
| chr1_4 | five_prime_UTR | 62774401 | 62774408 | 62774401 | ID=Msa0176390-mRNA-1:five_prime_utr;Parent=Msa0176390-mRNA-1 |
| chr1_4 | CDS | 62774116 | 62774400 | 62774116 | ID=Msa0176390-mRNA-1:cds;Parent=Msa0176390-mRNA-1 |
| chr1_4 | CDS | 62773332 | 62773541 | 62773332 | ID=Msa0176390-mRNA-1:cds;Parent=Msa0176390-mRNA-1 |
| chr1_4 | CDS | 62772466 | 62772567 | 62772466 | ID=Msa0176390-mRNA-1:cds;Parent=Msa0176390-mRNA-1 |
| chr1_4 | CDS | 62772217 | 62772330 | 62772217 | ID=Msa0176390-mRNA-1:cds;Parent=Msa0176390-mRNA-1 |
| chr1_4 | CDS | 62771508 | 62771681 | 62771508 | ID=Msa0176390-mRNA-1:cds;Parent=Msa0176390-mRNA-1 |
| chr1_4 | three_prime_UTR | 62771364 | 62771507 | 62771364 | ID=Msa0176390-mRNA-1:three_prime_utr;Parent=Msa0176390-mRNA-1 |
| chr1_4 | three_prime_UTR | 62771232 | 62771313 | 62771232 | ID=Msa0176390-mRNA-1:three_prime_utr;Parent=Msa0176390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
