Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036330 | XP_024640795.1 | 98.299 | 294 | 5 | 0 | 1 | 294 | 1 | 294 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036330 | sp|Q9LRN8|RK3B_ARATH | 66.975 | 324 | 77 | 4 | 1 | 294 | 1 | 324 | 1.82e-146 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036330 | Msa0040220 | 0.804003 | 2.660597e-49 | -8.615850e-47 |
| Msa0036330 | Msa0084250 | 0.812444 | 4.226329e-51 | -8.615850e-47 |
| Msa0036330 | Msa0130420 | 0.838997 | 2.061514e-57 | -8.615850e-47 |
| Msa0036330 | Msa0176390 | 0.842776 | 2.103523e-58 | -8.615850e-47 |
| Msa0036330 | Msa0475810 | 0.815409 | 9.383132e-52 | -8.615850e-47 |
| Msa0036330 | Msa0717380 | 0.813619 | 2.335083e-51 | -8.615850e-47 |
| Msa0036330 | Msa0799830 | 0.815988 | 6.970238e-52 | -8.615850e-47 |
| Msa0036330 | Msa1078870 | 0.802875 | 4.558751e-49 | -8.615850e-47 |
| Msa0036330 | Msa1258540 | 0.815667 | 8.219970e-52 | -8.615850e-47 |
| Msa0036330 | Msa1311400 | 0.807105 | 5.945343e-50 | -8.615850e-47 |
| Msa0036330 | Msa1426120 | 0.809556 | 1.784719e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036330 | MtrunA17_Chr1g0198561 | 98.299 | 294 | 5 | 0 | 1 | 294 | 1 | 294 | 0.0 | 598 |
| Msa0036330 | MtrunA17_Chr6g0450631 | 92.857 | 294 | 21 | 0 | 1 | 294 | 1 | 294 | 0.0 | 572 |
| Msa0036330 | MtrunA17_Chr2g0324401 | 94.340 | 106 | 6 | 0 | 189 | 294 | 1 | 106 | 1.49e-70 | 213 |
| Msa0036330 | MtrunA17_Chr3g0145851 | 41.063 | 207 | 116 | 6 | 49 | 251 | 58 | 262 | 4.97e-43 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036330 | AT3G17465.1 | 66.975 | 324 | 77 | 4 | 1 | 294 | 1 | 324 | 1.85e-147 | 417 |
| Msa0036330 | AT2G43030.1 | 38.835 | 206 | 122 | 4 | 49 | 251 | 57 | 261 | 4.72e-39 | 138 |
Find 105 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGGATGTGGATCCATTTA+TGG | 0.158517 | 1_1:-64785512 | Msa0036330:CDS |
| ACACCAGTTCTTTGTGAATT+TGG | 0.165812 | 1_1:+64788244 | None:intergenic |
| TGACTGCTCATTGGGATAAA+TGG | 0.166624 | 1_1:-64788201 | Msa0036330:CDS |
| CTCACTGTTCAGGTCTTTAA+AGG | 0.228704 | 1_1:-64786311 | Msa0036330:intron |
| CTTTAATCAGTAACCATAAA+TGG | 0.233502 | 1_1:+64785499 | None:intergenic |
| GAATTCCAATTTCTATCCTT+TGG | 0.239774 | 1_1:-64788171 | Msa0036330:CDS |
| AAACCTTTGGTTGCTGATCT+TGG | 0.318983 | 1_1:-64785532 | Msa0036330:CDS |
| AAGGTCAGTGCCAAATAATT+TGG | 0.321682 | 1_1:+64785227 | None:intergenic |
| TCTACCCAAAGGATAGAAAT+TGG | 0.334271 | 1_1:+64788166 | None:intergenic |
| AACCTTTGGTTGCTGATCTT+GGG | 0.341776 | 1_1:-64785531 | Msa0036330:CDS |
| ACCCACATCAAATTTCTTGC+TGG | 0.343726 | 1_1:+64786218 | None:intergenic |
| GTTCAGATGTGGAGACTATA+AGG | 0.352256 | 1_1:-64788297 | Msa0036330:CDS |
| CAGGGTGTAATGAAGAAGTA+TGG | 0.352968 | 1_1:-64786539 | Msa0036330:CDS |
| ATTGCTCTCAATACCCATTT+CGG | 0.369426 | 1_1:+64789490 | None:intergenic |
| CATACTGCCCAGGAACAAAA+TGG | 0.372996 | 1_1:+64787362 | None:intergenic |
| GCCCTAAAATGACCCACTTC+AGG | 0.379527 | 1_1:+64787472 | None:intergenic |
| GATGGACAAAAGGGTATAGT+AGG | 0.388477 | 1_1:+64789439 | None:intergenic |
| TCATCTGAATCTTCATCTTC+CGG | 0.389387 | 1_1:+64785559 | None:intergenic |
| AGCACTATTTCCCACCGAAA+TGG | 0.389573 | 1_1:-64789504 | None:intergenic |
| AATGAACCCAAAACCCTAGA+TGG | 0.393729 | 1_1:+64789421 | None:intergenic |
| TTCAGATGATATGAAACCTT+TGG | 0.395479 | 1_1:-64785545 | Msa0036330:CDS |
| AATTCCAATTTCTATCCTTT+GGG | 0.400773 | 1_1:-64788170 | Msa0036330:CDS |
| ATGAAGAAGTATGGATTTCA+TGG | 0.403214 | 1_1:-64786530 | Msa0036330:CDS |
| GACTGCTCATTGGGATAAAT+GGG | 0.404613 | 1_1:-64788200 | Msa0036330:CDS |
| GGTTGCTGATCTTGGGGATG+TGG | 0.407346 | 1_1:-64785524 | Msa0036330:CDS |
| GAACAATAGCCTTCCTTCTC+AGG | 0.410835 | 1_1:+64788115 | None:intergenic |
| TAAAGAGATAGTTCCACAAA+TGG | 0.411274 | 1_1:-64785481 | Msa0036330:three_prime_UTR |
| TAGAAAGATGCCAGGGAGAA+TGG | 0.416986 | 1_1:-64786288 | Msa0036330:CDS |
| TGCTTCCCACCCATTCTCCC+TGG | 0.421120 | 1_1:+64786278 | None:intergenic |
| ACAAAGTTCCCTGTAGCTCC+TGG | 0.431609 | 1_1:+64785649 | None:intergenic |
| AGGAATACTTGGTCCTTGTA+AGG | 0.431878 | 1_1:-64786456 | Msa0036330:intron |
| GCACTATTTCCCACCGAAAT+GGG | 0.441587 | 1_1:-64789503 | None:intergenic |
| GATTGGTTGTGGACAGAAGA+AGG | 0.441589 | 1_1:-64787512 | Msa0036330:CDS |
| ACACAGGTCCCAGGAGCTAC+AGG | 0.448282 | 1_1:-64785658 | Msa0036330:intron |
| CCTGCAAATAAGTGTAGACT+TGG | 0.448720 | 1_1:-64785295 | Msa0036330:intron |
| ACCTTTGGTTGCTGATCTTG+GGG | 0.448994 | 1_1:-64785530 | Msa0036330:CDS |
| CAAAACCCTAGATGGACAAA+AGG | 0.452437 | 1_1:+64789429 | None:intergenic |
| ATGTGGAATGACTGCTCATT+GGG | 0.453159 | 1_1:-64788209 | Msa0036330:CDS |
| CATAGAACCATGGGTTCTAC+AGG | 0.456921 | 1_1:-64786476 | Msa0036330:CDS |
| TCTTCCGGCACAAAGTAAGT+TGG | 0.469195 | 1_1:+64785574 | None:intergenic |
| AGATGACAACATTGTCTCTC+AGG | 0.475183 | 1_1:-64788146 | Msa0036330:CDS |
| ACACCAAATTCACAAAGAAC+TGG | 0.478282 | 1_1:-64788247 | Msa0036330:CDS |
| CTTCCGGCACAAAGTAAGTT+GGG | 0.483444 | 1_1:+64785575 | None:intergenic |
| AGAAAGATGCCAGGGAGAAT+GGG | 0.487342 | 1_1:-64786287 | Msa0036330:CDS |
| AGAAATTTGATGTGGGTGAA+AGG | 0.489286 | 1_1:-64786212 | Msa0036330:CDS |
| GGACTCCATCCAACCTTACA+AGG | 0.491579 | 1_1:+64786443 | None:intergenic |
| AAAGAGATAGTTCCACAAAT+GGG | 0.492226 | 1_1:-64785480 | Msa0036330:three_prime_UTR |
| AATCGCGGCAGTGGTGCCAC+GGG | 0.495730 | 1_1:+64788325 | None:intergenic |
| ACAGGAATCACCAAAGGAAA+AGG | 0.499760 | 1_1:-64787331 | Msa0036330:CDS |
| AATGTGGAATGACTGCTCAT+TGG | 0.503569 | 1_1:-64788210 | Msa0036330:CDS |
| ACATTAAGTGATGTACCAAC+AGG | 0.507292 | 1_1:+64787388 | None:intergenic |
| TATGTGCTTTCGAATTCCCA+TGG | 0.513084 | 1_1:+64786495 | None:intergenic |
| TCTTGAAGCTTCCTCTTCAT+CGG | 0.518555 | 1_1:+64787439 | None:intergenic |
| AAAAGGGTATAGTAGGGTGT+TGG | 0.525900 | 1_1:+64789446 | None:intergenic |
| GAATTTGGTGTCATCACACT+AGG | 0.526237 | 1_1:+64788259 | None:intergenic |
| CTCAAGGAGTTCCGATGAAG+AGG | 0.527266 | 1_1:-64787450 | Msa0036330:CDS |
| TTTGATGTGGGTGAAAGGCC+AGG | 0.528326 | 1_1:-64786207 | Msa0036330:intron |
| AAAGGAAGTATAGATGTGTC+AGG | 0.528945 | 1_1:+64785598 | None:intergenic |
| GGAAGGCTATTGTTCTCTCC+AGG | 0.530451 | 1_1:-64788107 | Msa0036330:intron |
| ATGGGTTCTACAGGAATACT+TGG | 0.533632 | 1_1:-64786467 | Msa0036330:CDS |
| AAATCGCGGCAGTGGTGCCA+CGG | 0.542479 | 1_1:+64788324 | None:intergenic |
| GAGGATGCACTTCTTCCTGT+TGG | 0.552055 | 1_1:-64787403 | Msa0036330:CDS |
| TTTCCCAACTTACTTTGTGC+CGG | 0.552953 | 1_1:-64785578 | Msa0036330:CDS |
| TCATCTTCGCATCTCAACTC+AGG | 0.553734 | 1_1:-64789372 | Msa0036330:intron |
| CAAAGTTCCCTGTAGCTCCT+GGG | 0.553971 | 1_1:+64785650 | None:intergenic |
| CATGGAGGTTCAGCATCCCA+TGG | 0.557351 | 1_1:-64786512 | Msa0036330:CDS |
| ACACTTGACAAAGCCTGAAG+TGG | 0.560843 | 1_1:-64787485 | Msa0036330:CDS |
| TTTAAAGGTAGAAAGATGCC+AGG | 0.564006 | 1_1:-64786296 | Msa0036330:CDS |
| AAAACCCTAGATGGACAAAA+GGG | 0.565069 | 1_1:+64789430 | None:intergenic |
| TCAGGTCAAAACTCCTGAGA+AGG | 0.567631 | 1_1:-64788128 | Msa0036330:CDS |
| CTCTCAATACCCATTTCGGT+GGG | 0.570281 | 1_1:+64789494 | None:intergenic |
| ATGTGCTTTCGAATTCCCAT+GGG | 0.571228 | 1_1:+64786496 | None:intergenic |
| AACTAGAACTTATCGAGTGA+AGG | 0.580719 | 1_1:+64785364 | None:intergenic |
| TCAAGAGTTTCGAGTGACAG+AGG | 0.581725 | 1_1:-64787422 | Msa0036330:CDS |
| GCTCTCAATACCCATTTCGG+TGG | 0.582489 | 1_1:+64789493 | None:intergenic |
| GTGTGCACAACACAGGTCCC+AGG | 0.582644 | 1_1:-64785667 | Msa0036330:intron |
| GGGCAGTATGTTGACATCAC+AGG | 0.583754 | 1_1:-64787349 | Msa0036330:CDS |
| ATGGAGGTTCAGCATCCCAT+GGG | 0.591854 | 1_1:-64786511 | Msa0036330:CDS |
| AAGATGCCAGGGAGAATGGG+TGG | 0.599236 | 1_1:-64786284 | Msa0036330:CDS |
| ATGGACAAAAGGGTATAGTA+GGG | 0.604099 | 1_1:+64789440 | None:intergenic |
| AAGTATTCCTGTAGAACCCA+TGG | 0.604216 | 1_1:+64786469 | None:intergenic |
| TCGAAAGCACATAGAACCAT+GGG | 0.605881 | 1_1:-64786485 | Msa0036330:CDS |
| GGCACAAAGTAAGTTGGGAA+AGG | 0.607369 | 1_1:+64785580 | None:intergenic |
| AAAATTCAAATAACAGAACA+TGG | 0.608055 | 1_1:+64785430 | None:intergenic |
| GTGATGTCAACATACTGCCC+AGG | 0.609175 | 1_1:+64787352 | None:intergenic |
| ACCTCTTGAAAACGCCAGCA+TGG | 0.609546 | 1_1:+64788372 | None:intergenic |
| CACTTGACAAAGCCTGAAGT+GGG | 0.609676 | 1_1:-64787484 | Msa0036330:CDS |
| AGATGAAGATGAAGATAGTG+AGG | 0.612516 | 1_1:+64789389 | None:intergenic |
| GTCAAAACTCCTGAGAAGGA+AGG | 0.621009 | 1_1:-64788124 | Msa0036330:CDS |
| ATCCAGCAAGAAATTTGATG+TGG | 0.622717 | 1_1:-64786220 | Msa0036330:CDS |
| TTCGAAAGCACATAGAACCA+TGG | 0.623227 | 1_1:-64786486 | Msa0036330:CDS |
| CACAGGTCCCAGGAGCTACA+GGG | 0.625211 | 1_1:-64785657 | Msa0036330:intron |
| AGATGCCAGGGAGAATGGGT+GGG | 0.644345 | 1_1:-64786283 | Msa0036330:CDS |
| GGTGTTATAGCTGTAAAATG+TGG | 0.647527 | 1_1:-64788226 | Msa0036330:CDS |
| TCCCCAAGATCAGCAACCAA+AGG | 0.647605 | 1_1:+64785529 | None:intergenic |
| GACATCACAGGAATCACCAA+AGG | 0.651363 | 1_1:-64787337 | Msa0036330:CDS |
| CAATGTTGTCATCTACCCAA+AGG | 0.657641 | 1_1:+64788155 | None:intergenic |
| TTAAAGGTAGAAAGATGCCA+GGG | 0.664670 | 1_1:-64786295 | Msa0036330:CDS |
| GATGAAGATGAAGATAGTGA+GGG | 0.666326 | 1_1:+64789390 | None:intergenic |
| GAAGATGAAGATAGTGAGGG+CGG | 0.674571 | 1_1:+64789393 | None:intergenic |
| TCCAGCAAGAAATTTGATGT+GGG | 0.677547 | 1_1:-64786219 | Msa0036330:CDS |
| AAGAAGTATGGATTTCATGG+AGG | 0.684184 | 1_1:-64786527 | Msa0036330:CDS |
| ATCGCGGCAGTGGTGCCACG+GGG | 0.726950 | 1_1:+64788326 | None:intergenic |
| TCGTCTTCGACAATTCCCCG+TGG | 0.741512 | 1_1:-64788341 | Msa0036330:CDS |
| ACTGCTCATTGGGATAAATG+GGG | 0.750912 | 1_1:-64788199 | Msa0036330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATATAAATTGGTAATT+TGG | - | chr1_1:64785472-64785491 | Msa0036330:three_prime_UTR | 10.0% |
| !! | TTTATTAAATTTGTATTTGT+AGG | - | chr1_1:64787624-64787643 | Msa0036330:intron | 10.0% |
| !! | TTCAAATATTCATAATCTTA+AGG | - | chr1_1:64785686-64785705 | Msa0036330:intron | 15.0% |
| !! | TCTTAATTCATATGAAAATT+AGG | - | chr1_1:64785762-64785781 | Msa0036330:intron | 15.0% |
| !! | ATAATAAGTAGATAAACTTA+AGG | + | chr1_1:64785913-64785932 | None:intergenic | 15.0% |
| !! | ACTTTATGAATATTTCAAAA+AGG | + | chr1_1:64785999-64786018 | None:intergenic | 15.0% |
| !!! | TTTGAAATATTCATAAAGTT+AGG | - | chr1_1:64786000-64786019 | Msa0036330:intron | 15.0% |
| !! | TTGAAATATTCATAAAGTTA+GGG | - | chr1_1:64786001-64786020 | Msa0036330:intron | 15.0% |
| !!! | TTTGAAATATTCATAATCTT+AGG | - | chr1_1:64786188-64786207 | Msa0036330:intron | 15.0% |
| !! | TTGAAATATTCATAATCTTA+GGG | - | chr1_1:64786189-64786208 | Msa0036330:intron | 15.0% |
| !! | AATGTTTATAATGAATAATG+CGG | + | chr1_1:64786765-64786784 | None:intergenic | 15.0% |
| !! | GTTTATAATGAGTTATTAAA+TGG | - | chr1_1:64787072-64787091 | Msa0036330:intron | 15.0% |
| !! | GACAGAAATTATTATTTATA+TGG | + | chr1_1:64787466-64787485 | None:intergenic | 15.0% |
| !! | TTGATTACATTAGTTATATT+AGG | - | chr1_1:64787693-64787712 | Msa0036330:intron | 15.0% |
| !! | TTGAACAAAACAATAAATAA+TGG | + | chr1_1:64787814-64787833 | None:intergenic | 15.0% |
| !! | CTACTAAATTAAATACAAAA+TGG | + | chr1_1:64788960-64788979 | None:intergenic | 15.0% |
| !! | TCTGCACAAATTATATAAAT+TGG | - | chr1_1:64785464-64785483 | Msa0036330:three_prime_UTR | 20.0% |
| !!! | TATAAATTGGTAATTTGGTT+AGG | - | chr1_1:64785477-64785496 | Msa0036330:three_prime_UTR | 20.0% |
| !!! | TTTAGTTTATCTAGTTAAAG+AGG | - | chr1_1:64785539-64785558 | Msa0036330:CDS | 20.0% |
| !!! | AAAAAATCTAATGTTGCTTA+TGG | + | chr1_1:64785632-64785651 | None:intergenic | 20.0% |
| !! | ATAGTAGGTAGTTAAATATA+GGG | + | chr1_1:64785848-64785867 | None:intergenic | 20.0% |
| !! | ACAGTAAGTTGTTAAAATAA+GGG | + | chr1_1:64785881-64785900 | None:intergenic | 20.0% |
| !! | GAATATTTCAAAAAGATCAT+TGG | + | chr1_1:64786180-64786199 | None:intergenic | 20.0% |
| !! | ATATGAAAATGAAAGCAATT+TGG | - | chr1_1:64786274-64786293 | Msa0036330:CDS | 20.0% |
| !!! | TCTTTTAATTCCACATATAT+AGG | - | chr1_1:64786320-64786339 | Msa0036330:intron | 20.0% |
| !! | TATATATAGAAGACATATCT+AGG | + | chr1_1:64787129-64787148 | None:intergenic | 20.0% |
| !! | ACAAAAAAACAATCATCTTA+GGG | + | chr1_1:64787664-64787683 | None:intergenic | 20.0% |
| !! | TACAAAAAAACAATCATCTT+AGG | + | chr1_1:64787665-64787684 | None:intergenic | 20.0% |
| !!! | AAGATGATTGTTTTTTTGTA+TGG | - | chr1_1:64787665-64787684 | Msa0036330:intron | 20.0% |
| !!! | AGATGATTGTTTTTTTGTAT+GGG | - | chr1_1:64787666-64787685 | Msa0036330:intron | 20.0% |
| !! | TTATTATATCATTAGGATTC+AGG | + | chr1_1:64787763-64787782 | None:intergenic | 20.0% |
| !! | TGTCAACTTATTATATCATT+AGG | + | chr1_1:64787770-64787789 | None:intergenic | 20.0% |
| !! | CAAATTCAATCATGTATTAT+AGG | - | chr1_1:64787788-64787807 | Msa0036330:intron | 20.0% |
| !! | GCAGAAAAATAAACAATAAA+TGG | + | chr1_1:64788028-64788047 | None:intergenic | 20.0% |
| !!! | ACACGTTTTTTTTTTTTGAA+TGG | - | chr1_1:64788118-64788137 | Msa0036330:CDS | 20.0% |
| !!! | AAATTATATTTTCTGTTTCC+AGG | - | chr1_1:64788162-64788181 | Msa0036330:CDS | 20.0% |
| !!! | AATTATATTTTCTGTTTCCA+GGG | - | chr1_1:64788163-64788182 | Msa0036330:CDS | 20.0% |
| !! | AAAGAACAGTAAAAAATGTA+TGG | - | chr1_1:64788464-64788483 | Msa0036330:intron | 20.0% |
| !! | AAGAACAGTAAAAAATGTAT+GGG | - | chr1_1:64788465-64788484 | Msa0036330:intron | 20.0% |
| !! | TTCACATTAATTTATGAACT+TGG | - | chr1_1:64788559-64788578 | Msa0036330:intron | 20.0% |
| !!! | TTTTGATGTACAAAATTTCT+TGG | + | chr1_1:64788895-64788914 | None:intergenic | 20.0% |
| !! | AAAATTCAAATAACAGAACA+TGG | + | chr1_1:64789293-64789312 | None:intergenic | 20.0% |
| !!! | GTTATTTGAATTTTGAACAT+AGG | - | chr1_1:64789299-64789318 | Msa0036330:intron | 20.0% |
| !!! | CAAATAATTTGGCTTAAAAA+AGG | + | chr1_1:64789485-64789504 | None:intergenic | 20.0% |
| !!! | CTTTTTTAAGCCAAATTATT+TGG | - | chr1_1:64789483-64789502 | Msa0036330:five_prime_UTR | 20.0% |
| !! | TTTTTGCTTCTTCATGATTT+TGG | - | chr1_1:64785432-64785451 | Msa0036330:three_prime_UTR | 25.0% |
| ! | AGTAAAATGTGATTGAATCA+AGG | - | chr1_1:64785658-64785677 | Msa0036330:intron | 25.0% |
| ! | GATAGTAGGTAGTTAAATAT+AGG | + | chr1_1:64785849-64785868 | None:intergenic | 25.0% |
| ! | CAGTAAGTTGTTAAAATAAG+GGG | + | chr1_1:64785880-64785899 | None:intergenic | 25.0% |
| ! | GACAGTAAGTTGTTAAAATA+AGG | + | chr1_1:64785882-64785901 | None:intergenic | 25.0% |
| !!! | TTAACAACTTACTGTCATTT+TGG | - | chr1_1:64785886-64785905 | Msa0036330:intron | 25.0% |
| ! | TGACTACAATTTAAAAGAGT+CGG | - | chr1_1:64785970-64785989 | Msa0036330:intron | 25.0% |
| ! | GGACTAAATTGTTAAAAAAG+TGG | + | chr1_1:64786112-64786131 | None:intergenic | 25.0% |
| ! | AATTCCAATTTCTATCCTTT+GGG | - | chr1_1:64786550-64786569 | Msa0036330:intron | 25.0% |
| ! | GATTGCATAAATACAAATTC+TGG | - | chr1_1:64786919-64786938 | Msa0036330:intron | 25.0% |
| ! | ACAGTAAAAAAAGCAGAATA+TGG | - | chr1_1:64787016-64787035 | Msa0036330:intron | 25.0% |
| ! | TTGAATTTCACCAATCTAAT+CGG | + | chr1_1:64787051-64787070 | None:intergenic | 25.0% |
| !!! | ATGCTTTGTTTTAGTTAGAT+TGG | - | chr1_1:64787191-64787210 | Msa0036330:intron | 25.0% |
| !! | TATGAAAGTATGTAATACGA+GGG | + | chr1_1:64787436-64787455 | None:intergenic | 25.0% |
| !! | ATATGAAAGTATGTAATACG+AGG | + | chr1_1:64787437-64787456 | None:intergenic | 25.0% |
| ! | ATTTACTTCTAGACAATCAT+TGG | - | chr1_1:64787855-64787874 | Msa0036330:intron | 25.0% |
| ! | AACTAAGAATACTAATCTGA+AGG | + | chr1_1:64788301-64788320 | None:intergenic | 25.0% |
| ! | AACATGTAAAAACAATTACC+TGG | + | chr1_1:64788534-64788553 | None:intergenic | 25.0% |
| ! | TAGCTCAATTATTCATTAAC+TGG | - | chr1_1:64788977-64788996 | Msa0036330:intron | 25.0% |
| !! | GGCAAAAATATTTGAAATCT+CGG | - | chr1_1:64788998-64789017 | Msa0036330:intron | 25.0% |
| ! | CTTTAATCAGTAACCATAAA+TGG | + | chr1_1:64789224-64789243 | None:intergenic | 25.0% |
| !! | ATTTGAATTTTGAACATAGG+TGG | - | chr1_1:64789302-64789321 | Msa0036330:intron | 25.0% |
| ! | TATCTAGTTAAAGAGGCTTT+TGG | - | chr1_1:64785546-64785565 | Msa0036330:CDS | 30.0% |
| ACTATGTTAAACTCTCAGAT+TGG | - | chr1_1:64785821-64785840 | Msa0036330:intron | 30.0% | |
| ATCCTTCAAAGAATATGCTA+GGG | + | chr1_1:64785945-64785964 | None:intergenic | 30.0% | |
| AATCCTTCAAAGAATATGCT+AGG | + | chr1_1:64785946-64785965 | None:intergenic | 30.0% | |
| AAATTAGTCCCAAACTTTGT+AGG | + | chr1_1:64786043-64786062 | None:intergenic | 30.0% | |
| ! | TACAAAGTTTGGGACTAATT+TGG | - | chr1_1:64786042-64786061 | Msa0036330:intron | 30.0% |
| AGTGAGTGGTTGAAATATAA+TGG | + | chr1_1:64786077-64786096 | None:intergenic | 30.0% | |
| TAAAGTACAAAATTCATCGC+TGG | + | chr1_1:64786240-64786259 | None:intergenic | 30.0% | |
| ACATCTGAACTAAAAAATCG+CGG | + | chr1_1:64786413-64786432 | None:intergenic | 30.0% | |
| GAATTCCAATTTCTATCCTT+TGG | - | chr1_1:64786549-64786568 | Msa0036330:intron | 30.0% | |
| AATCCACATGAAACTCATTA+GGG | + | chr1_1:64786675-64786694 | None:intergenic | 30.0% | |
| TAATCCACATGAAACTCATT+AGG | + | chr1_1:64786676-64786695 | None:intergenic | 30.0% | |
| TTGTGTAGTTGATTGGATTT+CGG | + | chr1_1:64786794-64786813 | None:intergenic | 30.0% | |
| CGAAAATTTGTGTAGTTGAT+TGG | + | chr1_1:64786801-64786820 | None:intergenic | 30.0% | |
| ACTTGATCCTTAACATAGTA+TGG | - | chr1_1:64786962-64786981 | Msa0036330:intron | 30.0% | |
| ATTATCGCCATACTATGTTA+AGG | + | chr1_1:64786972-64786991 | None:intergenic | 30.0% | |
| !!! | TGTTTTAGTTAGATTGGTTG+TGG | - | chr1_1:64787197-64787216 | Msa0036330:intron | 30.0% |
| TACATGTTTATGCTTGTATG+TGG | - | chr1_1:64787509-64787528 | Msa0036330:CDS | 30.0% | |
| CGTTTGTTTATTGACATGAT+TGG | - | chr1_1:64787582-64787601 | Msa0036330:intron | 30.0% | |
| TTGTCATTCATGTATGATTG+CGG | - | chr1_1:64788060-64788079 | Msa0036330:intron | 30.0% | |
| AAAAAAACGTGTAACTGACA+AGG | + | chr1_1:64788110-64788129 | None:intergenic | 30.0% | |
| !!! | TTTTTTGAATGGCAGTTACA+CGG | - | chr1_1:64788129-64788148 | Msa0036330:CDS | 30.0% |
| ! | ATGAAGAAGTATGGATTTCA+TGG | - | chr1_1:64788190-64788209 | Msa0036330:CDS | 30.0% |
| ATTTATGTTTCTCACTGTTC+AGG | - | chr1_1:64788399-64788418 | Msa0036330:intron | 30.0% | |
| !! | AATCACTTGATTTGTGTATG+AGG | + | chr1_1:64788613-64788632 | None:intergenic | 30.0% |
| ATACACAAATCAAGTGATTG+AGG | - | chr1_1:64788614-64788633 | Msa0036330:intron | 30.0% | |
| GGATGAATCAATCATATTCA+TGG | - | chr1_1:64788664-64788683 | Msa0036330:intron | 30.0% | |
| !! | GGGTAAGTAAAGTTTTAACA+TGG | + | chr1_1:64788700-64788719 | None:intergenic | 30.0% |
| TAATATCATCAAGAGAACGA+TGG | - | chr1_1:64788924-64788943 | Msa0036330:intron | 30.0% | |
| TTGAAATCTCGGATTTATCA+CGG | - | chr1_1:64789009-64789028 | Msa0036330:intron | 30.0% | |
| GAATGCTTATTCTCTTTGTA+TGG | - | chr1_1:64789031-64789050 | Msa0036330:intron | 30.0% | |
| TTCAGATGATATGAAACCTT+TGG | - | chr1_1:64789175-64789194 | Msa0036330:intron | 30.0% | |
| TAAAGAGATAGTTCCACAAA+TGG | - | chr1_1:64789239-64789258 | Msa0036330:intron | 30.0% | |
| AAAGAGATAGTTCCACAAAT+GGG | - | chr1_1:64789240-64789259 | Msa0036330:intron | 30.0% | |
| !! | CTAGTTGTTATTTGTGACTT+AGG | - | chr1_1:64789373-64789392 | Msa0036330:five_prime_UTR | 30.0% |
| !! | TTGTTATTTGTGACTTAGGA+TGG | - | chr1_1:64789377-64789396 | Msa0036330:five_prime_UTR | 30.0% |
| ! | TGTTATTTGTGACTTAGGAT+GGG | - | chr1_1:64789378-64789397 | Msa0036330:five_prime_UTR | 30.0% |
| GGCTTAAAAAAGGAAACAAT+TGG | + | chr1_1:64789475-64789494 | None:intergenic | 30.0% | |
| ATTGCTCTCAATACCCATTT+CGG | + | chr1_1:64785233-64785252 | None:intergenic | 35.0% | |
| ! | ATGGACAAAAGGGTATAGTA+GGG | + | chr1_1:64785283-64785302 | None:intergenic | 35.0% |
| ! | TATACCCTTTTGTCCATCTA+GGG | - | chr1_1:64785286-64785305 | Msa0036330:three_prime_UTR | 35.0% |
| AAAACCCTAGATGGACAAAA+GGG | + | chr1_1:64785293-64785312 | None:intergenic | 35.0% | |
| !! | TTTTGTCCATCTAGGGTTTT+GGG | - | chr1_1:64785293-64785312 | Msa0036330:intron | 35.0% |
| GATGAAGATGAAGATAGTGA+GGG | + | chr1_1:64785333-64785352 | None:intergenic | 35.0% | |
| AGATGAAGATGAAGATAGTG+AGG | + | chr1_1:64785334-64785353 | None:intergenic | 35.0% | |
| AGTTACAAGCAAATCAATCG+AGG | + | chr1_1:64785404-64785423 | None:intergenic | 35.0% | |
| !! | TGAGTTTGTTATCCTGCATT+TGG | - | chr1_1:64785511-64785530 | Msa0036330:CDS | 35.0% |
| AACTAAACTACTCCAAATGC+AGG | + | chr1_1:64785526-64785545 | None:intergenic | 35.0% | |
| !! | AACATAGTCAAGGACTAGTT+TGG | + | chr1_1:64785809-64785828 | None:intergenic | 35.0% |
| CTGAGAGTTTAACATAGTCA+AGG | + | chr1_1:64785819-64785838 | None:intergenic | 35.0% | |
| ! | AAAGTTTGGGACTAATTTGG+TGG | - | chr1_1:64786045-64786064 | Msa0036330:intron | 35.0% |
| CATGGCAAAACCTATATATG+TGG | + | chr1_1:64786333-64786352 | None:intergenic | 35.0% | |
| ! | ATATATAGGTTTTGCCATGC+TGG | - | chr1_1:64786334-64786353 | Msa0036330:intron | 35.0% |
| !!! | GCGATTTTTTAGTTCAGATG+TGG | - | chr1_1:64786412-64786431 | Msa0036330:intron | 35.0% |
| ACACCAAATTCACAAAGAAC+TGG | - | chr1_1:64786473-64786492 | Msa0036330:CDS | 35.0% | |
| ACACCAGTTCTTTGTGAATT+TGG | + | chr1_1:64786479-64786498 | None:intergenic | 35.0% | |
| ! | GGTGTTATAGCTGTAAAATG+TGG | - | chr1_1:64786494-64786513 | Msa0036330:CDS | 35.0% |
| TCTACCCAAAGGATAGAAAT+TGG | + | chr1_1:64786557-64786576 | None:intergenic | 35.0% | |
| TATCCCTAATGAGTTTCATG+TGG | - | chr1_1:64786669-64786688 | Msa0036330:intron | 35.0% | |
| TGCGGAGTAACTAAACTAAA+AGG | + | chr1_1:64786747-64786766 | None:intergenic | 35.0% | |
| CATAGTATGGCGATAATATC+TGG | - | chr1_1:64786975-64786994 | Msa0036330:intron | 35.0% | |
| GCGATAATATCTGGTTAGAT+TGG | - | chr1_1:64786984-64787003 | Msa0036330:intron | 35.0% | |
| ACATTAAGTGATGTACCAAC+AGG | + | chr1_1:64787335-64787354 | None:intergenic | 35.0% | |
| TGCTATTATATAGACACGTG+CGG | + | chr1_1:64787537-64787556 | None:intergenic | 35.0% | |
| GAGTGGCAACTTATTGTTAT+TGG | + | chr1_1:64787732-64787751 | None:intergenic | 35.0% | |
| ! | TTCAAATTTTCAGAGAGGTC+AGG | + | chr1_1:64787970-64787989 | None:intergenic | 35.0% |
| ! | TGCGTTTCAAATTTTCAGAG+AGG | + | chr1_1:64787975-64787994 | None:intergenic | 35.0% |
| ! | TTTTTGAATGGCAGTTACAC+GGG | - | chr1_1:64788130-64788149 | Msa0036330:CDS | 35.0% |
| ! | AAGAAGTATGGATTTCATGG+AGG | - | chr1_1:64788193-64788212 | Msa0036330:CDS | 35.0% |
| TTTAAAGGTAGAAAGATGCC+AGG | - | chr1_1:64788424-64788443 | Msa0036330:intron | 35.0% | |
| TTAAAGGTAGAAAGATGCCA+GGG | - | chr1_1:64788425-64788444 | Msa0036330:intron | 35.0% | |
| ATCCAGCAAGAAATTTGATG+TGG | - | chr1_1:64788500-64788519 | Msa0036330:intron | 35.0% | |
| TCCAGCAAGAAATTTGATGT+GGG | - | chr1_1:64788501-64788520 | Msa0036330:intron | 35.0% | |
| AGAAATTTGATGTGGGTGAA+AGG | - | chr1_1:64788508-64788527 | Msa0036330:intron | 35.0% | |
| ATTTATGAACTTGGAGCTCT+AGG | - | chr1_1:64788568-64788587 | Msa0036330:intron | 35.0% | |
| TTTATGAACTTGGAGCTCTA+GGG | - | chr1_1:64788569-64788588 | Msa0036330:intron | 35.0% | |
| !! | GGTTGATGAGTTTGAGTTAA+AGG | - | chr1_1:64788643-64788662 | Msa0036330:intron | 35.0% |
| TAATCCGGAGTTCAATCAAA+GGG | + | chr1_1:64788720-64788739 | None:intergenic | 35.0% | |
| TCATTAATGACCAAGTGTCT+TGG | + | chr1_1:64788790-64788809 | None:intergenic | 35.0% | |
| ! | AAAGGAAGTATAGATGTGTC+AGG | + | chr1_1:64789125-64789144 | None:intergenic | 35.0% |
| TCATCTGAATCTTCATCTTC+CGG | + | chr1_1:64789164-64789183 | None:intergenic | 35.0% | |
| AACTAGAACTTATCGAGTGA+AGG | + | chr1_1:64789359-64789378 | None:intergenic | 35.0% | |
| GTTATTTGTGACTTAGGATG+GGG | - | chr1_1:64789379-64789398 | Msa0036330:five_prime_UTR | 35.0% | |
| TTATTTGTGACTTAGGATGG+GGG | - | chr1_1:64789380-64789399 | Msa0036330:five_prime_UTR | 35.0% | |
| AAGGTCAGTGCCAAATAATT+TGG | + | chr1_1:64789496-64789515 | None:intergenic | 35.0% | |
| ! | AAAAGGGTATAGTAGGGTGT+TGG | + | chr1_1:64785277-64785296 | None:intergenic | 40.0% |
| ! | GATGGACAAAAGGGTATAGT+AGG | + | chr1_1:64785284-64785303 | None:intergenic | 40.0% |
| ! | CTATACCCTTTTGTCCATCT+AGG | - | chr1_1:64785285-64785304 | Msa0036330:three_prime_UTR | 40.0% |
| CAAAACCCTAGATGGACAAA+AGG | + | chr1_1:64785294-64785313 | None:intergenic | 40.0% | |
| !! | CTTTTGTCCATCTAGGGTTT+TGG | - | chr1_1:64785292-64785311 | Msa0036330:intron | 40.0% |
| AATGAACCCAAAACCCTAGA+TGG | + | chr1_1:64785302-64785321 | None:intergenic | 40.0% | |
| TTCAACTAAGACCTTTGCAG+TGG | - | chr1_1:64785569-64785588 | Msa0036330:CDS | 40.0% | |
| !! | ATAGTCAAGGACTAGTTTGG+TGG | + | chr1_1:64785806-64785825 | None:intergenic | 40.0% |
| ! | AAGGGGACTGAATTGATAGT+AGG | + | chr1_1:64785863-64785882 | None:intergenic | 40.0% |
| GTCCCTAGCATATTCTTTGA+AGG | - | chr1_1:64785940-64785959 | Msa0036330:intron | 40.0% | |
| TTTGTAGGTCGCTCTCAAAT+AGG | + | chr1_1:64786028-64786047 | None:intergenic | 40.0% | |
| GGTTAAATACAGAGAGTGAG+TGG | + | chr1_1:64786091-64786110 | None:intergenic | 40.0% | |
| ! | TTTAGTCCTTCTGAGAGTCA+AGG | + | chr1_1:64786137-64786156 | None:intergenic | 40.0% |
| !! | AATTCATCGCTGGCTTTGTA+GGG | + | chr1_1:64786230-64786249 | None:intergenic | 40.0% |
| !! | AAATTCATCGCTGGCTTTGT+AGG | + | chr1_1:64786231-64786250 | None:intergenic | 40.0% |
| GTTCAGATGTGGAGACTATA+AGG | - | chr1_1:64786423-64786442 | Msa0036330:intron | 40.0% | |
| !! | GAATTTGGTGTCATCACACT+AGG | + | chr1_1:64786464-64786483 | None:intergenic | 40.0% |
| AATGTGGAATGACTGCTCAT+TGG | - | chr1_1:64786510-64786529 | Msa0036330:CDS | 40.0% | |
| ATGTGGAATGACTGCTCATT+GGG | - | chr1_1:64786511-64786530 | Msa0036330:CDS | 40.0% | |
| TGACTGCTCATTGGGATAAA+TGG | - | chr1_1:64786519-64786538 | Msa0036330:CDS | 40.0% | |
| GACTGCTCATTGGGATAAAT+GGG | - | chr1_1:64786520-64786539 | Msa0036330:CDS | 40.0% | |
| ACTGCTCATTGGGATAAATG+GGG | - | chr1_1:64786521-64786540 | Msa0036330:CDS | 40.0% | |
| CAATGTTGTCATCTACCCAA+AGG | + | chr1_1:64786568-64786587 | None:intergenic | 40.0% | |
| AGATGACAACATTGTCTCTC+AGG | - | chr1_1:64786574-64786593 | Msa0036330:intron | 40.0% | |
| ATTCAGCTTAGAGTTACTCC+TGG | - | chr1_1:64787099-64787118 | Msa0036330:intron | 40.0% | |
| AAGACATATCTAGGTACTCC+AGG | + | chr1_1:64787120-64787139 | None:intergenic | 40.0% | |
| TCTTGAAGCTTCCTCTTCAT+CGG | + | chr1_1:64787284-64787303 | None:intergenic | 40.0% | |
| !! | AATGTTCGCCATTTTGTTCC+TGG | - | chr1_1:64787350-64787369 | Msa0036330:CDS | 40.0% |
| !! | ATGTTCGCCATTTTGTTCCT+GGG | - | chr1_1:64787351-64787370 | Msa0036330:CDS | 40.0% |
| ACAGGAATCACCAAAGGAAA+AGG | - | chr1_1:64787389-64787408 | Msa0036330:CDS | 40.0% | |
| ! | CACCAAAGGAAAAGGTTTTC+AGG | - | chr1_1:64787397-64787416 | Msa0036330:CDS | 40.0% |
| ! | CACCTGAAAACCTTTTCCTT+TGG | + | chr1_1:64787402-64787421 | None:intergenic | 40.0% |
| GCTATTATATAGACACGTGC+GGG | + | chr1_1:64787536-64787555 | None:intergenic | 40.0% | |
| !! | TAGCAGTTGAGTTGAATGCA+TGG | - | chr1_1:64787552-64787571 | Msa0036330:intron | 40.0% |
| AATCTTGCACGTACAAGTTC+AGG | - | chr1_1:64787905-64787924 | Msa0036330:intron | 40.0% | |
| TCAGAGAGGTCAGGTAAAAT+GGG | + | chr1_1:64787961-64787980 | None:intergenic | 40.0% | |
| TTCAGAGAGGTCAGGTAAAA+TGG | + | chr1_1:64787962-64787981 | None:intergenic | 40.0% | |
| ! | AACGCAAAATGTTGAGTTGC+AGG | - | chr1_1:64787989-64788008 | Msa0036330:intron | 40.0% |
| CATACTTCTTCATTACACCC+TGG | + | chr1_1:64788183-64788202 | None:intergenic | 40.0% | |
| CAGGGTGTAATGAAGAAGTA+TGG | - | chr1_1:64788181-64788200 | Msa0036330:CDS | 40.0% | |
| ATGTGCTTTCGAATTCCCAT+GGG | + | chr1_1:64788227-64788246 | None:intergenic | 40.0% | |
| TATGTGCTTTCGAATTCCCA+TGG | + | chr1_1:64788228-64788247 | None:intergenic | 40.0% | |
| ! | TTCGAAAGCACATAGAACCA+TGG | - | chr1_1:64788234-64788253 | Msa0036330:CDS | 40.0% |
| ! | TCGAAAGCACATAGAACCAT+GGG | - | chr1_1:64788235-64788254 | Msa0036330:CDS | 40.0% |
| AAGTATTCCTGTAGAACCCA+TGG | + | chr1_1:64788254-64788273 | None:intergenic | 40.0% | |
| ATGGGTTCTACAGGAATACT+TGG | - | chr1_1:64788253-64788272 | Msa0036330:CDS | 40.0% | |
| AGGAATACTTGGTCCTTGTA+AGG | - | chr1_1:64788264-64788283 | Msa0036330:CDS | 40.0% | |
| ATACTTGGTCCTTGTAAGGT+TGG | - | chr1_1:64788268-64788287 | Msa0036330:CDS | 40.0% | |
| CTCACTGTTCAGGTCTTTAA+AGG | - | chr1_1:64788409-64788428 | Msa0036330:intron | 40.0% | |
| ACCCACATCAAATTTCTTGC+TGG | + | chr1_1:64788505-64788524 | None:intergenic | 40.0% | |
| ! | TTATGAACTTGGAGCTCTAG+GGG | - | chr1_1:64788570-64788589 | Msa0036330:intron | 40.0% |
| CTTACCCTTTGATTGAACTC+CGG | - | chr1_1:64788713-64788732 | Msa0036330:intron | 40.0% | |
| GTAATCCGGAGTTCAATCAA+AGG | + | chr1_1:64788721-64788740 | None:intergenic | 40.0% | |
| TGATTGAACTCCGGATTACT+AGG | - | chr1_1:64788722-64788741 | Msa0036330:intron | 40.0% | |
| GATTGAACTCCGGATTACTA+GGG | - | chr1_1:64788723-64788742 | Msa0036330:intron | 40.0% | |
| ! | CCAAGTGTCTTGGTTGATAT+TGG | + | chr1_1:64788780-64788799 | None:intergenic | 40.0% |
| CCAATATCAACCAAGACACT+TGG | - | chr1_1:64788777-64788796 | Msa0036330:intron | 40.0% | |
| ACTGCAAATGTGCAAATGGT+GGG | + | chr1_1:64788838-64788857 | None:intergenic | 40.0% | |
| AACTGCAAATGTGCAAATGG+TGG | + | chr1_1:64788839-64788858 | None:intergenic | 40.0% | |
| CCATTTGCACATTTGCAGTT+CGG | - | chr1_1:64788839-64788858 | Msa0036330:intron | 40.0% | |
| TATCATCAAGAGAACGATGG+TGG | - | chr1_1:64788927-64788946 | Msa0036330:intron | 40.0% | |
| TTTCCCAACTTACTTTGTGC+CGG | - | chr1_1:64789142-64789161 | Msa0036330:intron | 40.0% | |
| AAACCTTTGGTTGCTGATCT+TGG | - | chr1_1:64789188-64789207 | Msa0036330:intron | 40.0% | |
| AACCTTTGGTTGCTGATCTT+GGG | - | chr1_1:64789189-64789208 | Msa0036330:intron | 40.0% | |
| CTTGCACAAAAACCCATTTG+TGG | + | chr1_1:64789255-64789274 | None:intergenic | 40.0% | |
| !! | CACAAATGGGTTTTTGTGCA+AGG | - | chr1_1:64789253-64789272 | Msa0036330:intron | 40.0% |
| TATTTGTGACTTAGGATGGG+GGG | - | chr1_1:64789381-64789400 | Msa0036330:five_prime_UTR | 40.0% | |
| CCAAGTCTACACTTATTTGC+AGG | + | chr1_1:64789428-64789447 | None:intergenic | 40.0% | |
| CCTGCAAATAAGTGTAGACT+TGG | - | chr1_1:64789425-64789444 | Msa0036330:five_prime_UTR | 40.0% | |
| CTCTCAATACCCATTTCGGT+GGG | + | chr1_1:64785229-64785248 | None:intergenic | 45.0% | |
| GAAGATGAAGATAGTGAGGG+CGG | + | chr1_1:64785330-64785349 | None:intergenic | 45.0% | |
| TCATCTTCGCATCTCAACTC+AGG | - | chr1_1:64785348-64785367 | Msa0036330:intron | 45.0% | |
| GAGGCAGAATAGAAAGAGCA+TGG | + | chr1_1:64785385-64785404 | None:intergenic | 45.0% | |
| TGAGAGCGACCTACAAAGTT+TGG | - | chr1_1:64786031-64786050 | Msa0036330:intron | 45.0% | |
| GAGAGCGACCTACAAAGTTT+GGG | - | chr1_1:64786032-64786051 | Msa0036330:intron | 45.0% | |
| ! | TTTGTAGGGCGCTCTCAAAT+AGG | + | chr1_1:64786216-64786235 | None:intergenic | 45.0% |
| GAACTAAAAAATCGCGGCAG+TGG | + | chr1_1:64786407-64786426 | None:intergenic | 45.0% | |
| TCAGGTCAAAACTCCTGAGA+AGG | - | chr1_1:64786592-64786611 | Msa0036330:intron | 45.0% | |
| GTCAAAACTCCTGAGAAGGA+AGG | - | chr1_1:64786596-64786615 | Msa0036330:intron | 45.0% | |
| GAACAATAGCCTTCCTTCTC+AGG | + | chr1_1:64786608-64786627 | None:intergenic | 45.0% | |
| GCGACAGTATCCGATTAGAT+TGG | - | chr1_1:64787038-64787057 | Msa0036330:intron | 45.0% | |
| ! | GATTGGTTGTGGACAGAAGA+AGG | - | chr1_1:64787208-64787227 | Msa0036330:intron | 45.0% |
| ACACTTGACAAAGCCTGAAG+TGG | - | chr1_1:64787235-64787254 | Msa0036330:intron | 45.0% | |
| CACTTGACAAAGCCTGAAGT+GGG | - | chr1_1:64787236-64787255 | Msa0036330:intron | 45.0% | |
| !! | AGCCTGAAGTGGGTCATTTT+AGG | - | chr1_1:64787246-64787265 | Msa0036330:intron | 45.0% |
| !! | GCCTGAAGTGGGTCATTTTA+GGG | - | chr1_1:64787247-64787266 | Msa0036330:intron | 45.0% |
| ! | TCAAGAGTTTCGAGTGACAG+AGG | - | chr1_1:64787298-64787317 | Msa0036330:intron | 45.0% |
| CATACTGCCCAGGAACAAAA+TGG | + | chr1_1:64787361-64787380 | None:intergenic | 45.0% | |
| GACATCACAGGAATCACCAA+AGG | - | chr1_1:64787383-64787402 | Msa0036330:CDS | 45.0% | |
| GCACGTACAAGTTCAGGTAA+TGG | - | chr1_1:64787911-64787930 | Msa0036330:intron | 45.0% | |
| ! | TGTTGAGTTGCAGGCTTTCT+AGG | - | chr1_1:64787998-64788017 | Msa0036330:intron | 45.0% |
| ! | GTTGAGTTGCAGGCTTTCTA+GGG | - | chr1_1:64787999-64788018 | Msa0036330:intron | 45.0% |
| ! | TTGAGTTGCAGGCTTTCTAG+GGG | - | chr1_1:64788000-64788019 | Msa0036330:intron | 45.0% |
| CATAGAACCATGGGTTCTAC+AGG | - | chr1_1:64788244-64788263 | Msa0036330:CDS | 45.0% | |
| TTGGTCCTTGTAAGGTTGGA+TGG | - | chr1_1:64788272-64788291 | Msa0036330:CDS | 45.0% | |
| TAGAAAGATGCCAGGGAGAA+TGG | - | chr1_1:64788432-64788451 | Msa0036330:intron | 45.0% | |
| AGAAAGATGCCAGGGAGAAT+GGG | - | chr1_1:64788433-64788452 | Msa0036330:intron | 45.0% | |
| ATCAAGTGATTGAGGTCGAG+CGG | - | chr1_1:64788622-64788641 | Msa0036330:intron | 45.0% | |
| ! | TTACTAGGGCTCCTTCCTTT+TGG | - | chr1_1:64788737-64788756 | Msa0036330:intron | 45.0% |
| ! | TACTAGGGCTCCTTCCTTTT+GGG | - | chr1_1:64788738-64788757 | Msa0036330:intron | 45.0% |
| !! | TGATATTGGCCTTGACTCTC+CGG | + | chr1_1:64788766-64788785 | None:intergenic | 45.0% |
| CCGAACTGCAAATGTGCAAA+TGG | + | chr1_1:64788842-64788861 | None:intergenic | 45.0% | |
| TTGTATGGTGTGCACAACAC+AGG | - | chr1_1:64789046-64789065 | Msa0036330:intron | 45.0% | |
| ! | GGCACAAAGTAAGTTGGGAA+AGG | + | chr1_1:64789143-64789162 | None:intergenic | 45.0% |
| CTTCCGGCACAAAGTAAGTT+GGG | + | chr1_1:64789148-64789167 | None:intergenic | 45.0% | |
| TCTTCCGGCACAAAGTAAGT+TGG | + | chr1_1:64789149-64789168 | None:intergenic | 45.0% | |
| ACCTTTGGTTGCTGATCTTG+GGG | - | chr1_1:64789190-64789209 | Msa0036330:intron | 45.0% | |
| TGGGGATGTGGATCCATTTA+TGG | - | chr1_1:64789208-64789227 | Msa0036330:intron | 45.0% | |
| GCTCTCAATACCCATTTCGG+TGG | + | chr1_1:64785230-64785249 | None:intergenic | 50.0% | |
| TTTGCAGCATGCCACTGCAA+AGG | + | chr1_1:64785583-64785602 | None:intergenic | 50.0% | |
| !! | GAGAGCGCTCTACAAAGTCA+GGG | - | chr1_1:64785717-64785736 | Msa0036330:intron | 50.0% |
| ! | GTCCTTCTGAGAGTCAAGGA+GGG | + | chr1_1:64786133-64786152 | None:intergenic | 50.0% |
| ! | AGTCCTTCTGAGAGTCAAGG+AGG | + | chr1_1:64786134-64786153 | None:intergenic | 50.0% |
| ACCTCTTGAAAACGCCAGCA+TGG | + | chr1_1:64786351-64786370 | None:intergenic | 50.0% | |
| GGAAGGCTATTGTTCTCTCC+AGG | - | chr1_1:64786613-64786632 | Msa0036330:intron | 50.0% | |
| AGAATGAAGCAGAACGCACC+TGG | + | chr1_1:64786634-64786653 | None:intergenic | 50.0% | |
| GTGCGTTCTGCTTCATTCTC+AGG | - | chr1_1:64786635-64786654 | Msa0036330:intron | 50.0% | |
| GCCCTAAAATGACCCACTTC+AGG | + | chr1_1:64787251-64787270 | None:intergenic | 50.0% | |
| !!! | GTGGGTCATTTTAGGGCTCA+AGG | - | chr1_1:64787254-64787273 | Msa0036330:intron | 50.0% |
| CTCAAGGAGTTCCGATGAAG+AGG | - | chr1_1:64787270-64787289 | Msa0036330:intron | 50.0% | |
| GAGGATGCACTTCTTCCTGT+TGG | - | chr1_1:64787317-64787336 | Msa0036330:intron | 50.0% | |
| GTGATGTCAACATACTGCCC+AGG | + | chr1_1:64787371-64787390 | None:intergenic | 50.0% | |
| GGGCAGTATGTTGACATCAC+AGG | - | chr1_1:64787371-64787390 | Msa0036330:CDS | 50.0% | |
| ! | GGATTCAGGACTCTGAAGAG+TGG | + | chr1_1:64787749-64787768 | None:intergenic | 50.0% |
| TGAGTTGCAGGCTTTCTAGG+GGG | - | chr1_1:64788001-64788020 | Msa0036330:intron | 50.0% | |
| ATGGAGGTTCAGCATCCCAT+GGG | - | chr1_1:64788209-64788228 | Msa0036330:CDS | 50.0% | |
| GGACTCCATCCAACCTTACA+AGG | + | chr1_1:64788280-64788299 | None:intergenic | 50.0% | |
| TTTGATGTGGGTGAAAGGCC+AGG | - | chr1_1:64788513-64788532 | Msa0036330:intron | 50.0% | |
| AGGAAGGAGCCCTAGTAATC+CGG | + | chr1_1:64788735-64788754 | None:intergenic | 50.0% | |
| TTGACTCTCCGGTTCCCAAA+AGG | + | chr1_1:64788755-64788774 | None:intergenic | 50.0% | |
| !! | TTTTGGGAACCGGAGAGTCA+AGG | - | chr1_1:64788754-64788773 | Msa0036330:intron | 50.0% |
| CAAAGTTCCCTGTAGCTCCT+GGG | + | chr1_1:64789073-64789092 | None:intergenic | 50.0% | |
| ACAAAGTTCCCTGTAGCTCC+TGG | + | chr1_1:64789074-64789093 | None:intergenic | 50.0% | |
| TCCCCAAGATCAGCAACCAA+AGG | + | chr1_1:64789194-64789213 | None:intergenic | 50.0% | |
| GCAGTGGCATGCTGCAAATG+TGG | - | chr1_1:64785585-64785604 | Msa0036330:CDS | 55.0% | |
| !! | CGAGAGCGCTCTACAAAGTC+AGG | - | chr1_1:64785716-64785735 | Msa0036330:intron | 55.0% |
| GTCCCTCCTTGACTCTCAGA+AGG | - | chr1_1:64786128-64786147 | Msa0036330:intron | 55.0% | |
| !! | GCCATGCTGGCGTTTTCAAG+AGG | - | chr1_1:64786347-64786366 | Msa0036330:intron | 55.0% |
| !! | GCTGGCGTTTTCAAGAGGTG+TGG | - | chr1_1:64786352-64786371 | Msa0036330:intron | 55.0% |
| TCGTCTTCGACAATTCCCCG+TGG | - | chr1_1:64786379-64786398 | Msa0036330:intron | 55.0% | |
| ! | GAGTTGCAGGCTTTCTAGGG+GGG | - | chr1_1:64788002-64788021 | Msa0036330:intron | 55.0% |
| CATGGAGGTTCAGCATCCCA+TGG | - | chr1_1:64788208-64788227 | Msa0036330:CDS | 55.0% | |
| AAGATGCCAGGGAGAATGGG+TGG | - | chr1_1:64788436-64788455 | Msa0036330:intron | 55.0% | |
| AGATGCCAGGGAGAATGGGT+GGG | - | chr1_1:64788437-64788456 | Msa0036330:intron | 55.0% | |
| !! | GGCTCCTTCCTTTTGGGAAC+CGG | - | chr1_1:64788744-64788763 | Msa0036330:intron | 55.0% |
| CTCTCCGGTTCCCAAAAGGA+AGG | + | chr1_1:64788751-64788770 | None:intergenic | 55.0% | |
| GGTTGCTGATCTTGGGGATG+TGG | - | chr1_1:64789196-64789215 | Msa0036330:intron | 55.0% | |
| GACTTAGGATGGGGGGAACA+TGG | - | chr1_1:64789388-64789407 | Msa0036330:five_prime_UTR | 55.0% | |
| ! | AAATCGCGGCAGTGGTGCCA+CGG | + | chr1_1:64786399-64786418 | None:intergenic | 60.0% |
| TGCTTCCCACCCATTCTCCC+TGG | + | chr1_1:64788445-64788464 | None:intergenic | 60.0% | |
| GTGTGCACAACACAGGTCCC+AGG | - | chr1_1:64789053-64789072 | Msa0036330:intron | 60.0% | |
| ACACAGGTCCCAGGAGCTAC+AGG | - | chr1_1:64789062-64789081 | Msa0036330:intron | 60.0% | |
| CACAGGTCCCAGGAGCTACA+GGG | - | chr1_1:64789063-64789082 | Msa0036330:intron | 60.0% | |
| !! | AATCGCGGCAGTGGTGCCAC+GGG | + | chr1_1:64786398-64786417 | None:intergenic | 65.0% |
| !! | ATCGCGGCAGTGGTGCCACG+GGG | + | chr1_1:64786397-64786416 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 64785224 | 64789518 | 64785224 | ID=Msa0036330;Name=Msa0036330 |
| chr1_1 | mRNA | 64785224 | 64789518 | 64785224 | ID=Msa0036330-mRNA-1;Parent=Msa0036330;Name=Msa0036330-mRNA-1;_AED=0.17;_eAED=0.17;_QI=154|1|1|1|0.66|0.42|7|226|294 |
| chr1_1 | exon | 64785224 | 64785305 | 64785224 | ID=Msa0036330-mRNA-1:exon:20790;Parent=Msa0036330-mRNA-1 |
| chr1_1 | exon | 64785357 | 64785674 | 64785357 | ID=Msa0036330-mRNA-1:exon:20789;Parent=Msa0036330-mRNA-1 |
| chr1_1 | exon | 64786208 | 64786321 | 64786208 | ID=Msa0036330-mRNA-1:exon:20788;Parent=Msa0036330-mRNA-1 |
| chr1_1 | exon | 64786457 | 64786558 | 64786457 | ID=Msa0036330-mRNA-1:exon:20787;Parent=Msa0036330-mRNA-1 |
| chr1_1 | exon | 64787324 | 64787533 | 64787324 | ID=Msa0036330-mRNA-1:exon:20786;Parent=Msa0036330-mRNA-1 |
| chr1_1 | exon | 64788108 | 64788400 | 64788108 | ID=Msa0036330-mRNA-1:exon:20785;Parent=Msa0036330-mRNA-1 |
| chr1_1 | exon | 64789373 | 64789518 | 64789373 | ID=Msa0036330-mRNA-1:exon:20784;Parent=Msa0036330-mRNA-1 |
| chr1_1 | five_prime_UTR | 64789373 | 64789518 | 64789373 | ID=Msa0036330-mRNA-1:five_prime_utr;Parent=Msa0036330-mRNA-1 |
| chr1_1 | five_prime_UTR | 64788393 | 64788400 | 64788393 | ID=Msa0036330-mRNA-1:five_prime_utr;Parent=Msa0036330-mRNA-1 |
| chr1_1 | CDS | 64788108 | 64788392 | 64788108 | ID=Msa0036330-mRNA-1:cds;Parent=Msa0036330-mRNA-1 |
| chr1_1 | CDS | 64787324 | 64787533 | 64787324 | ID=Msa0036330-mRNA-1:cds;Parent=Msa0036330-mRNA-1 |
| chr1_1 | CDS | 64786457 | 64786558 | 64786457 | ID=Msa0036330-mRNA-1:cds;Parent=Msa0036330-mRNA-1 |
| chr1_1 | CDS | 64786208 | 64786321 | 64786208 | ID=Msa0036330-mRNA-1:cds;Parent=Msa0036330-mRNA-1 |
| chr1_1 | CDS | 64785501 | 64785674 | 64785501 | ID=Msa0036330-mRNA-1:cds;Parent=Msa0036330-mRNA-1 |
| chr1_1 | three_prime_UTR | 64785357 | 64785500 | 64785357 | ID=Msa0036330-mRNA-1:three_prime_utr;Parent=Msa0036330-mRNA-1 |
| chr1_1 | three_prime_UTR | 64785224 | 64785305 | 64785224 | ID=Msa0036330-mRNA-1:three_prime_utr;Parent=Msa0036330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
