AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0177100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177100 MtrunA17_Chr1g0199801 93.648 488 6 2 1 488 1 463 0.0 927
Msa0177100 MtrunA17_Chr2g0292051 43.515 478 190 12 11 487 21 419 7.19e-121 361
Msa0177100 MtrunA17_Chr1g0185551 38.325 394 174 8 74 464 29 356 5.63e-82 259
Msa0177100 MtrunA17_Chr7g0259871 36.893 412 193 9 74 479 29 379 5.40e-80 253
Msa0177100 MtrunA17_Chr1g0153781 27.083 432 252 15 75 483 21 412 3.13e-35 136
Msa0177100 MtrunA17_Chr5g0402441 31.045 335 189 12 75 388 16 329 3.86e-34 132
Msa0177100 MtrunA17_Chr5g0402451 30.931 333 195 10 75 388 10 326 1.55e-33 130
Msa0177100 MtrunA17_Chr3g0133691 29.032 403 221 16 94 473 39 399 2.09e-32 128
Msa0177100 MtrunA17_Chr3g0133681 27.889 398 226 14 94 470 39 396 5.00e-32 127
Msa0177100 MtrunA17_Chr8g0335581 26.098 410 245 10 75 470 21 386 5.62e-28 115
Msa0177100 MtrunA17_Chr8g0335611 28.710 411 233 14 75 470 32 397 5.31e-27 112
Msa0177100 MtrunA17_Chr8g0335621 28.193 415 230 15 75 470 63 428 1.49e-26 112
Msa0177100 MtrunA17_Chr8g0335591 26.269 453 263 16 31 473 7 398 2.34e-25 108
Msa0177100 MtrunA17_Chr8g0335651 29.484 407 220 17 75 470 33 383 7.90e-24 103
Msa0177100 MtrunA17_Chr8g0335631 30.061 326 175 11 75 378 32 326 1.45e-20 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177100 AT2G39220.1 65.833 480 125 6 8 483 37 481 0.0 629
Msa0177100 AT3G54950.1 65.762 479 109 6 8 486 48 471 0.0 624
Msa0177100 AT4G29800.2 60.870 483 150 5 17 486 53 509 0.0 562
Msa0177100 AT4G29800.1 60.663 483 150 5 17 486 53 508 0.0 559
Msa0177100 AT3G63200.1 39.898 391 176 6 74 464 29 360 8.63e-86 269
Msa0177100 AT4G37060.1 31.447 318 189 9 75 376 19 323 1.38e-36 140
Msa0177100 AT4G37070.2 27.381 420 244 14 75 473 19 398 1.03e-34 135
Msa0177100 AT4G37070.3 30.189 318 193 9 75 376 19 323 1.50e-34 134
Msa0177100 AT4G37070.1 30.189 318 193 9 75 376 19 323 1.50e-34 134
Msa0177100 AT2G26560.1 29.496 417 238 14 75 473 19 397 7.07e-34 132
Msa0177100 AT4G37060.2 29.023 348 189 10 75 376 19 354 4.29e-31 125
Msa0177100 AT4G37070.4 28.302 318 188 9 75 376 19 312 1.15e-28 117
Msa0177100 AT5G43590.1 30.218 321 186 8 75 376 14 315 1.42e-25 108
Msa0177100 AT5G43590.2 30.218 321 186 8 75 376 81 382 2.77e-25 108
Msa0177100 AT4G37050.1 29.231 325 195 11 75 376 35 347 9.73e-25 106

Find 186 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGGTTGGGTTTGGGCTTCT+AGG 0.192840 1_4:-63935246 None:intergenic
GACAAGTGGTGTAATTAAAA+AGG 0.197078 1_4:+63937111 Msa0177100:three_prime_UTR
TTCTATAGACGGGTTGGGTT+TGG 0.215604 1_4:-63935255 None:intergenic
AGCTGGATTTGGACTTGTTT+TGG 0.225310 1_4:+63934480 Msa0177100:CDS
CAGAAGCTTGATTGGCTTGC+TGG 0.233034 1_4:+63935143 Msa0177100:CDS
TTGGGCTTCTAGGTGGGTTT+TGG 0.233776 1_4:-63935236 None:intergenic
TCTATAGACGGGTTGGGTTT+GGG 0.246532 1_4:-63935254 None:intergenic
CAGGCCGTTGCTATGGCGTT+TGG 0.279175 1_4:+63934043 Msa0177100:CDS
CTTGAAAGCAAGTTTCTCTT+TGG 0.290842 1_4:+63933047 Msa0177100:CDS
CTGTTTGGAGGGAAGAAGAT+TGG 0.292097 1_4:+63935104 Msa0177100:CDS
ATGAAGCAGCTGTTGTAATT+TGG 0.305701 1_4:+63932361 None:intergenic
CTATGGCGTTTGGGCATTGC+CGG 0.308860 1_4:+63934053 Msa0177100:CDS
GGAGCTAGCTTTGCTACTTT+CGG 0.323930 1_4:+63932440 Msa0177100:five_prime_UTR
AGCTTATCCGTTTCAATGCT+TGG 0.329646 1_4:-63933002 None:intergenic
ACAGGCAAGTGGATCAAGTA+TGG 0.331661 1_4:+63934977 Msa0177100:intron
CTCGTTCTTTCGCTTGGAAC+CGG 0.334222 1_4:+63933908 Msa0177100:CDS
CATCAGCATCTTTACATTGC+TGG 0.334510 1_4:-63935036 None:intergenic
GTAACTTTCAGAAGCTTGAT+TGG 0.348924 1_4:+63935135 Msa0177100:CDS
TAGAGCAACTTCGGCTGAAC+CGG 0.359167 1_4:+63933727 Msa0177100:CDS
GCTTGCTGGAGAACTTGTTC+AGG 0.361300 1_4:+63935157 Msa0177100:CDS
TCACAAGAGGACAGACATTA+TGG 0.363412 1_4:+63937162 Msa0177100:three_prime_UTR
AAATTCAGAGGGTGGTGAAT+TGG 0.367705 1_4:+63937312 Msa0177100:three_prime_UTR
AGGGTAATAATTCTATTCTA+AGG 0.371139 1_4:-63932573 None:intergenic
TACTAATTATGTCCGTGTTC+AGG 0.380764 1_4:+63934078 Msa0177100:CDS
AGCAAGTTGAAGGGTATGTA+TGG 0.382104 1_4:+63934449 Msa0177100:intron
TTTGAAATATGAAATATATA+AGG 0.383056 1_4:-63932660 None:intergenic
AGAAAAGCAGAAAATAATAA+TGG 0.385664 1_4:+63932950 Msa0177100:exon
AGGCCGTTGCTATGGCGTTT+GGG 0.395216 1_4:+63934044 Msa0177100:CDS
TCAACATCAGGTATCTGCTT+AGG 0.397587 1_4:-63933095 None:intergenic
GTTGGGTTTGGGCTTCTAGG+TGG 0.408569 1_4:-63935243 None:intergenic
CTCTGCTGACCTTGTTGATC+AGG 0.412847 1_4:+63934024 Msa0177100:CDS
AAATTCTACCGTCAGGGAAC+AGG 0.418583 1_4:+63933440 Msa0177100:CDS
TTTGACGTGGCAGCCGGTGC+CGG 0.419564 1_4:+63933314 Msa0177100:CDS
GGAGAAGCAAAGAGTGGAGG+AGG 0.422020 1_4:-63932639 None:intergenic
GCCGTGGCGGCGACGGTTGG+TGG 0.422292 1_4:-63933128 None:intergenic
ATCAGCATCTTTACATTGCT+GGG 0.425599 1_4:-63935035 None:intergenic
GCTTGGAACCGGTCAGTTGT+TGG 0.425684 1_4:+63933919 Msa0177100:CDS
TCCGTTCGTGCGAGGGGTGG+AGG 0.430043 1_4:+63933880 Msa0177100:CDS
TGGGGTGAGATAGCTGGATT+TGG 0.431104 1_4:+63934469 Msa0177100:CDS
CCGGGTGAAGACGGATATAT+AGG 0.441132 1_4:+63936963 Msa0177100:three_prime_UTR
GTTTAGGTTGGTTCTATAGA+CGG 0.441257 1_4:-63935266 None:intergenic
GGAACAGGCAATGGAAGCTC+CGG 0.443643 1_4:+63933455 Msa0177100:CDS
GGCTGCCACGTCAAAATAAT+CGG 0.443651 1_4:-63933306 None:intergenic
GCTTTGCTACTTTCGGCAAA+AGG 0.444059 1_4:+63932447 Msa0177100:five_prime_UTR
TCAATAGACCGCATTTGAAC+CGG 0.444590 1_4:-63933761 None:intergenic
TCTGTTCGGTGCTTGTTTGT+TGG 0.446381 1_4:+63932395 Msa0177100:five_prime_UTR
GCTGAAAGACACTTTAAAAC+CGG 0.447229 1_4:+63933601 Msa0177100:CDS
GTTCAAATGCGGTCTATTGA+TGG 0.451860 1_4:+63933764 Msa0177100:CDS
TTCCGTCGAATCTGCGACGG+CGG 0.453716 1_4:+63933523 Msa0177100:CDS
AATGGAAGCTCCGGCGGGAG+AGG 0.454766 1_4:+63933464 Msa0177100:CDS
TGAACCGGGTTTACTTGAAC+CGG 0.456051 1_4:+63933742 Msa0177100:CDS
TTGAAATACGAGCCATTGGC+CGG 0.457567 1_4:-63933994 None:intergenic
GTGTCATCCGCCGAGAAAAT+CGG 0.458396 1_4:-63933389 None:intergenic
TATGTATGGGGTGAGATAGC+TGG 0.461828 1_4:+63934463 Msa0177100:CDS
CTTCCCACGTTGATTCTTGA+CGG 0.463155 1_4:-63933168 None:intergenic
TTTAGGTTGGTTCTATAGAC+GGG 0.463219 1_4:-63935265 None:intergenic
TCCGTCGAATCTGCGACGGC+GGG 0.463860 1_4:+63933524 Msa0177100:CDS
ACACGTGCTTCATAATAAAC+AGG 0.466024 1_4:+63933853 Msa0177100:CDS
CAACATCAGGTATCTGCTTA+GGG 0.467164 1_4:-63933094 None:intergenic
GTTGGTTCTATAGACGGGTT+GGG 0.467229 1_4:-63935260 None:intergenic
CGAGATGGAAGGCGAAGGAT+TGG 0.469895 1_4:+63933969 Msa0177100:CDS
ACCAAGTGTGTGGCGGTTGA+TGG 0.471814 1_4:+63933791 Msa0177100:CDS
GGGGAAGAAATTCTACCGTC+AGG 0.473318 1_4:+63933433 Msa0177100:CDS
GTTTGTATATAGCAAGTTGA+AGG 0.473804 1_4:+63934439 Msa0177100:intron
AATGTGGAGTCAGTTCTGTT+TGG 0.474082 1_4:+63935089 Msa0177100:CDS
GGTTGGTTCTATAGACGGGT+TGG 0.477005 1_4:-63935261 None:intergenic
GATTTGCTCGTTCTTTCGCT+TGG 0.477265 1_4:+63933902 Msa0177100:CDS
GCAAGTTGAAGGGTATGTAT+GGG 0.477898 1_4:+63934450 Msa0177100:intron
AAGATAGACAAGGGTTAGAG+AGG 0.479107 1_4:+63937074 Msa0177100:three_prime_UTR
TACCGTCAGGGAACAGGCAA+TGG 0.479650 1_4:+63933446 Msa0177100:CDS
CGAATCTGCGACGGCGGGGA+TGG 0.480183 1_4:+63933529 Msa0177100:CDS
TTGGGTTTGGGCTTCTAGGT+GGG 0.481384 1_4:-63935242 None:intergenic
ACAGGCAATGGAAGCTCCGG+CGG 0.482595 1_4:+63933458 Msa0177100:CDS
GTCAACGGCCGTGGCGGCGA+CGG 0.484836 1_4:-63933135 None:intergenic
GGATTTCTCAAGAGACTGTT+CGG 0.485627 1_4:+63933485 Msa0177100:CDS
GTGGCAGCCGGTGCCGGCGT+CGG 0.487538 1_4:+63933320 Msa0177100:CDS
AAAAGAAGAGTGCAAATAGC+AGG 0.488103 1_4:+63937026 Msa0177100:three_prime_UTR
CGCACCGGTAGGATTATTCA+TGG 0.488768 1_4:-63933822 None:intergenic
TGTGGCGGTTGATGGTGGTT+TGG 0.489151 1_4:+63933799 Msa0177100:CDS
TCATAGCACGGTATCAAAAC+CGG 0.489644 1_4:-63933620 None:intergenic
CTTGCATCTGTATCCACATT+GGG 0.490760 1_4:-63935011 None:intergenic
TGTTGATCAGGCCGTTGCTA+TGG 0.491992 1_4:+63934036 Msa0177100:CDS
AAGAAGATTATTATTGAATG+AGG 0.492160 1_4:+63932706 Msa0177100:five_prime_UTR
GAAGGATTGGGCCCGGCCAA+TGG 0.492348 1_4:+63933982 Msa0177100:CDS
ACGGCCGTGGCGGCGACGGT+TGG 0.499828 1_4:-63933131 None:intergenic
AGCAGATGAGATGTTGAAGC+AGG 0.502021 1_4:+63935064 Msa0177100:CDS
CTCAAGAGACTGTTCGGTAG+CGG 0.503155 1_4:+63933491 Msa0177100:CDS
TCCTCCACCCCTCGCACGAA+CGG 0.514409 1_4:-63933881 None:intergenic
AGGAGTTTCCGTTCGTGCGA+GGG 0.515075 1_4:+63933873 Msa0177100:CDS
CAGAGAGAAACTGAGTCAAA+AGG 0.515223 1_4:-63932538 None:intergenic
GTGGAGTCAGTTCTGTTTGG+AGG 0.515867 1_4:+63935092 Msa0177100:CDS
AAAATGTTGCCGGGTGAAGA+CGG 0.516577 1_4:+63936954 Msa0177100:three_prime_UTR
GAGAAAATTAACACAAGAGT+GGG 0.518824 1_4:+63932490 Msa0177100:five_prime_UTR
CCTATATATCCGTCTTCACC+CGG 0.519294 1_4:-63936963 None:intergenic
ACCACCAACCGTCGCCGCCA+CGG 0.521167 1_4:+63933127 Msa0177100:CDS
GGAAACAGAGTCAACGGCCG+TGG 0.527447 1_4:-63933144 None:intergenic
GATGTTGAAGCAGGAGAATG+TGG 0.527488 1_4:+63935073 Msa0177100:CDS
AACAAGATGGAGAAAGTGAA+AGG 0.528258 1_4:+63937003 Msa0177100:three_prime_UTR
AATACCTCCGACGCCGGCAC+CGG 0.530714 1_4:-63933327 None:intergenic
GGAAGGCGAAGGATTGGGCC+CGG 0.531527 1_4:+63933975 Msa0177100:CDS
GAGAAGCAAAGAGTGGAGGA+GGG 0.532846 1_4:-63932638 None:intergenic
GCAAGAACCAAGCATTGAAA+CGG 0.533106 1_4:+63932995 Msa0177100:CDS
AACTTGTTCAGGAGCATCAG+AGG 0.533773 1_4:+63935168 Msa0177100:CDS
GCTACGATGATCAAAAGCTC+TGG 0.535567 1_4:+63933069 Msa0177100:CDS
GGTTGTTGAGAATCAACATC+AGG 0.536613 1_4:-63933107 None:intergenic
TTCCATTGCCTGTTCCCTGA+CGG 0.537005 1_4:-63933448 None:intergenic
CCCCGCCGTCGCAGATTCGA+CGG 0.537842 1_4:-63933525 None:intergenic
GAGATGGAAGGCGAAGGATT+GGG 0.539639 1_4:+63933970 Msa0177100:CDS
TCACTTGAAATACGAGCCAT+TGG 0.542079 1_4:-63933998 None:intergenic
ACCATCAACCGCCACACACT+TGG 0.543430 1_4:-63933792 None:intergenic
CGTGAAAATACCTCCGACGC+CGG 0.544652 1_4:-63933333 None:intergenic
CAGGCAAGTGGATCAAGTAT+GGG 0.544765 1_4:+63934978 Msa0177100:intron
ATATAAGGAGAAGCAAAGAG+TGG 0.546945 1_4:-63932645 None:intergenic
GACGGCGGGGATGGAGAAAA+CGG 0.553646 1_4:+63933538 Msa0177100:CDS
GCAGCCGGTGCCGGCGTCGG+AGG 0.554285 1_4:+63933323 Msa0177100:CDS
CACGTGTGTAATCGCCGCAC+CGG 0.555745 1_4:-63933837 None:intergenic
TGGAGTCAGTTCTGTTTGGA+GGG 0.556278 1_4:+63935093 Msa0177100:CDS
GTTTCCGTTCGTGCGAGGGG+TGG 0.558566 1_4:+63933877 Msa0177100:CDS
TAGAACCAACCTAAACAAAA+CGG 0.563484 1_4:+63935273 Msa0177100:three_prime_UTR
TGAAATACGAGCCATTGGCC+GGG 0.563766 1_4:-63933993 None:intergenic
CAGGCAATGGAAGCTCCGGC+GGG 0.564349 1_4:+63933459 Msa0177100:CDS
CAGGAGTTTCCGTTCGTGCG+AGG 0.565614 1_4:+63933872 Msa0177100:CDS
GGAGTTTCCGTTCGTGCGAG+GGG 0.566638 1_4:+63933874 Msa0177100:CDS
AGAGCAACTTCGGCTGAACC+GGG 0.567221 1_4:+63933728 Msa0177100:CDS
TTTGTATATAGCAAGTTGAA+GGG 0.567371 1_4:+63934440 Msa0177100:intron
TTCAATAGGCGTCACTTCCG+AGG 0.570661 1_4:+63932880 Msa0177100:intron
ATGCCCAAACGCCATAGCAA+CGG 0.571854 1_4:-63934047 None:intergenic
CAGCAATGTAAAGATGCTGA+TGG 0.572721 1_4:+63935037 Msa0177100:CDS
TGTGTAATCGCCGCACCGGT+AGG 0.577539 1_4:-63933833 None:intergenic
GGAGGTGTGTAGAGCAACTT+CGG 0.577605 1_4:+63933718 Msa0177100:CDS
AGAGAAAATTAACACAAGAG+TGG 0.579080 1_4:+63932489 Msa0177100:five_prime_UTR
ATTATGATCGTGTTACGAGA+TGG 0.583294 1_4:+63933954 Msa0177100:CDS
AAGAATGAAAATTCAGAGGG+TGG 0.586242 1_4:+63937304 Msa0177100:three_prime_UTR
TGGAACCGGTCAGTTGTTGG+AGG 0.586781 1_4:+63933922 Msa0177100:CDS
ACTTGCATCTGTATCCACAT+TGG 0.590823 1_4:-63935012 None:intergenic
ATACTCGCAATCGACGGAGG+AGG 0.593613 1_4:+63933197 Msa0177100:CDS
CACGGACATAATTAGTACTC+CGG 0.593724 1_4:-63934072 None:intergenic
GGGTAATAATTCTATTCTAA+GGG 0.597458 1_4:-63932572 None:intergenic
ACGTGCGGATGCTTTAGAAA+CGG 0.601408 1_4:+63933673 Msa0177100:CDS
TACTTGAACCGGTTCAAATG+CGG 0.602507 1_4:+63933753 Msa0177100:CDS
TAAGGAGAAGCAAAGAGTGG+AGG 0.602874 1_4:-63932642 None:intergenic
TGGGATACTTTGCTCACAAG+AGG 0.606593 1_4:+63937149 Msa0177100:three_prime_UTR
GTTGACCTCCAACAACTGAC+CGG 0.609502 1_4:-63933927 None:intergenic
CTTGAGAAATCCTCTCCCGC+CGG 0.609642 1_4:-63933474 None:intergenic
TGATGTTTACATAGATAGAG+AGG 0.611209 1_4:+63932419 Msa0177100:five_prime_UTR
TTGGCCATGAATAATCCTAC+CGG 0.612580 1_4:+63933818 Msa0177100:CDS
TGAACCGGTTCAAGTAAACC+CGG 0.613116 1_4:-63933746 None:intergenic
AAGAGACTGTTCGGTAGCGG+AGG 0.614347 1_4:+63933494 Msa0177100:CDS
AACAGAGTCAACGGCCGTGG+CGG 0.614880 1_4:-63933141 None:intergenic
GAGTTCCGTCGAATCTGCGA+CGG 0.615964 1_4:+63933520 Msa0177100:CDS
ATATGTATACTCGCAATCGA+CGG 0.616372 1_4:+63933191 Msa0177100:CDS
GACGGCGGAAACAGAGTCAA+CGG 0.623711 1_4:-63933150 None:intergenic
AAGTGTGTGGCGGTTGATGG+TGG 0.623727 1_4:+63933794 Msa0177100:CDS
AGCAATGTAAAGATGCTGAT+GGG 0.623748 1_4:+63935038 Msa0177100:CDS
TGTATACTCGCAATCGACGG+AGG 0.625011 1_4:+63933194 Msa0177100:CDS
GGGAAGAAATTCTACCGTCA+GGG 0.626899 1_4:+63933434 Msa0177100:CDS
ACATGAACATGACAGGCAAG+TGG 0.629207 1_4:+63934966 Msa0177100:intron
AAGGGTGGGAAGATCTCTGT+GGG 0.631445 1_4:+63937130 Msa0177100:three_prime_UTR
GTGCTATGATTTATCCAGTA+CGG 0.631624 1_4:+63933634 Msa0177100:CDS
CTGATCAACAAGGTCAGCAG+AGG 0.631671 1_4:-63934023 None:intergenic
CAAGTTGAAGGGTATGTATG+GGG 0.633709 1_4:+63934451 Msa0177100:CDS
GCTTGTTTGAAAGCAACAGT+GGG 0.637490 1_4:-63935209 None:intergenic
GGTATGCGAGGCATTCTCGC+CGG 0.639751 1_4:+63933218 Msa0177100:CDS
TTGTTCAGGAGCATCAGAGG+AGG 0.639976 1_4:+63935171 Msa0177100:CDS
AGGCAAGTGGATCAAGTATG+GGG 0.644681 1_4:+63934979 Msa0177100:intron
TGATCGTGTTACGAGATGGA+AGG 0.645672 1_4:+63933958 Msa0177100:CDS
GGTGAAGACGGATATATAGG+AGG 0.648744 1_4:+63936966 Msa0177100:three_prime_UTR
TGTTTGCTACAAAAGATCAA+CGG 0.650812 1_4:+63933363 Msa0177100:CDS
ATCGACGGAGGAGGTATGCG+AGG 0.653166 1_4:+63933206 Msa0177100:CDS
AGCTTGTTTGAAAGCAACAG+TGG 0.657080 1_4:-63935210 None:intergenic
AGAAGAGTGCAAATAGCAGG+TGG 0.662294 1_4:+63937029 Msa0177100:three_prime_UTR
TAGCAACGGCCTGATCAACA+AGG 0.664417 1_4:-63934033 None:intergenic
CCGTCGAATCTGCGACGGCG+GGG 0.668981 1_4:+63933525 Msa0177100:CDS
CCCACGTTGATTCTTGACGG+CGG 0.670164 1_4:-63933165 None:intergenic
TGTTACGAGATGGAAGGCGA+AGG 0.671448 1_4:+63933964 Msa0177100:CDS
GGATCAAGTATGGGGCAATG+TGG 0.678401 1_4:+63934987 Msa0177100:CDS
GGGGCAATGTGGTCCCAATG+TGG 0.693974 1_4:+63934998 Msa0177100:CDS
TGGTGTAACCAAGTGTGTGG+CGG 0.702857 1_4:+63933784 Msa0177100:CDS
TGATGGTGTAACCAAGTGTG+TGG 0.703336 1_4:+63933781 Msa0177100:CDS
AAAGGGTGGGAAGATCTCTG+TGG 0.709815 1_4:+63937129 Msa0177100:three_prime_UTR
TCAAAGAACATACCTGAACA+CGG 0.711546 1_4:-63934090 None:intergenic
CATGAATAATCCTACCGGTG+CGG 0.712541 1_4:+63933823 Msa0177100:CDS
GTACTGGATAAATCATAGCA+CGG 0.718842 1_4:-63933632 None:intergenic
CCGCCGTCAAGAATCAACGT+GGG 0.730624 1_4:+63933165 Msa0177100:CDS
TCTCGGCGGATGACACGTGG+CGG 0.736625 1_4:+63933396 Msa0177100:CDS
TCCGCCGTCAAGAATCAACG+TGG 0.746396 1_4:+63933164 Msa0177100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAAATATGAAATATATA+AGG - chr1_4:63932663-63932682 None:intergenic 10.0%
!!! GTATGTATTTTTTTTTAATT+TGG + chr1_4:63932728-63932747 Msa0177100:intron 10.0%
!!! TATTTTTTTTTAATTTGGAA+TGG + chr1_4:63932733-63932752 Msa0177100:intron 10.0%
!! TATAGAATTACTATATAAAA+TGG + chr1_4:63935912-63935931 Msa0177100:intron 10.0%
!!! GTTTTTTTATTTTGAAATTA+CGG + chr1_4:63936220-63936239 Msa0177100:intron 10.0%
!!! TTTTTTTATTTTGAAATTAC+GGG + chr1_4:63936221-63936240 Msa0177100:intron 10.0%
!! ATTCAATTTACAATATTGTT+TGG + chr1_4:63934127-63934146 Msa0177100:intron 15.0%
!! TTTAGTATAGTTACAATATT+TGG + chr1_4:63934275-63934294 Msa0177100:intron 15.0%
!!! TTTTTGTTAATTTACCAAAA+AGG - chr1_4:63934790-63934809 None:intergenic 15.0%
!! AATTACTATATAAAATGGTT+AGG + chr1_4:63935917-63935936 Msa0177100:intron 15.0%
!! AAATAAAAAAACAAACAAAC+CGG - chr1_4:63936212-63936231 None:intergenic 15.0%
!! TTGACTAAATAATGTAAATT+TGG + chr1_4:63936577-63936596 Msa0177100:intron 15.0%
!! TGACTAAATAATGTAAATTT+GGG + chr1_4:63936578-63936597 Msa0177100:intron 15.0%
!!! CATTTTTTTTCCTTTTAATT+TGG + chr1_4:63936819-63936838 Msa0177100:intron 15.0%
!!! ATAATATTTCATTTTGTGAA+TGG + chr1_4:63936867-63936886 Msa0177100:intron 15.0%
!! AAGAAGATTATTATTGAATG+AGG + chr1_4:63932706-63932725 Msa0177100:five_prime_UTR 20.0%
!!! TCTTTTTAGCTCTTTTTATT+TGG - chr1_4:63932810-63932829 None:intergenic 20.0%
!!! TCTTCTTATCTTTTTTCAAT+AGG + chr1_4:63932866-63932885 Msa0177100:intron 20.0%
!! AGAAAAGCAGAAAATAATAA+TGG + chr1_4:63932950-63932969 Msa0177100:exon 20.0%
!!! ATAGTTTTGATTTTCGTTTA+TGG + chr1_4:63933696-63933715 Msa0177100:CDS 20.0%
!!! TAGTTTTGATTTTCGTTTAT+GGG + chr1_4:63933697-63933716 Msa0177100:CDS 20.0%
!! TGTTGAATTGATAAAAGTTA+AGG + chr1_4:63934333-63934352 Msa0177100:intron 20.0%
!! GTTGAATTGATAAAAGTTAA+GGG + chr1_4:63934334-63934353 Msa0177100:intron 20.0%
!! TTGAATTGATAAAAGTTAAG+GGG + chr1_4:63934335-63934354 Msa0177100:intron 20.0%
!!! CAATTTTAGGAAATTTTTGT+TGG + chr1_4:63934557-63934576 Msa0177100:intron 20.0%
!! AACTATTGAAGTAATTATTG+GGG - chr1_4:63934731-63934750 None:intergenic 20.0%
!! CAACTATTGAAGTAATTATT+GGG - chr1_4:63934732-63934751 None:intergenic 20.0%
!! TCAACTATTGAAGTAATTAT+TGG - chr1_4:63934733-63934752 None:intergenic 20.0%
!!! ATTTGTTAGTATTAGGAAAA+GGG + chr1_4:63936015-63936034 Msa0177100:intron 20.0%
!! TCATAAATAAAATCAGATCA+TGG + chr1_4:63936117-63936136 Msa0177100:intron 20.0%
!! TATTTGGTTACATATTTCTT+TGG + chr1_4:63936407-63936426 Msa0177100:intron 20.0%
!!! GAATTCTATTTATTTTGCAA+AGG + chr1_4:63936613-63936632 Msa0177100:intron 20.0%
!!! ATATTTCTGTCTTGTTTTTT+TGG - chr1_4:63936735-63936754 None:intergenic 20.0%
!! TGGTAAATATACTATATGTT+TGG - chr1_4:63936771-63936790 None:intergenic 20.0%
!! GGAAAAAAAATGATAAGATT+TGG - chr1_4:63936811-63936830 None:intergenic 20.0%
!! TATTATAAATTTCAAGAGCA+AGG - chr1_4:63936853-63936872 None:intergenic 20.0%
!! AAAAAAGAATGAAAATTCAG+AGG + chr1_4:63937300-63937319 Msa0177100:three_prime_UTR 20.0%
!! AAAAAGAATGAAAATTCAGA+GGG + chr1_4:63937301-63937320 Msa0177100:three_prime_UTR 20.0%
!! TGGGATTTTAGATTACAAAA+GGG + chr1_4:63932509-63932528 Msa0177100:five_prime_UTR 25.0%
!! ATTTTAGATTACAAAAGGGT+GGG + chr1_4:63932513-63932532 Msa0177100:five_prime_UTR 25.0%
! GGGTAATAATTCTATTCTAA+GGG - chr1_4:63932575-63932594 None:intergenic 25.0%
! AGGGTAATAATTCTATTCTA+AGG - chr1_4:63932576-63932595 None:intergenic 25.0%
!!! TCATATTTCAAAGTGTTTTC+TGG + chr1_4:63932671-63932690 Msa0177100:five_prime_UTR 25.0%
!! TTTGTATATAGCAAGTTGAA+GGG + chr1_4:63934440-63934459 Msa0177100:intron 25.0%
! AAAATTGAAACACATTCTTC+TGG - chr1_4:63934544-63934563 None:intergenic 25.0%
!! GAAGAATGTGTTTCAATTTT+AGG + chr1_4:63934544-63934563 Msa0177100:intron 25.0%
! GAAACTAATTACCAAAACTA+TGG - chr1_4:63934584-63934603 None:intergenic 25.0%
!! ATTAGTTTCATTATAGCATG+TGG + chr1_4:63934595-63934614 Msa0177100:intron 25.0%
!!! CTTAATTTTGATCCTAAAGA+CGG - chr1_4:63934676-63934695 None:intergenic 25.0%
! CGAGATTATTGAATTTCATT+TGG + chr1_4:63934704-63934723 Msa0177100:intron 25.0%
!!! TGTGTTCTAAAATACCTTTT+TGG + chr1_4:63934773-63934792 Msa0177100:intron 25.0%
!! TTGGTAATTTATTACTCAAG+GGG - chr1_4:63935373-63935392 None:intergenic 25.0%
!! CTTGGTAATTTATTACTCAA+GGG - chr1_4:63935374-63935393 None:intergenic 25.0%
! ATTGTTATCTGATTAGTACT+TGG - chr1_4:63935522-63935541 None:intergenic 25.0%
!!! GGTCTTTGGTAATTTTTAAT+GGG + chr1_4:63935697-63935716 Msa0177100:intron 25.0%
!!! TTTGGTAATTTTTAATGGGT+GGG + chr1_4:63935701-63935720 Msa0177100:intron 25.0%
! TAAAGACATCCACAAATTAA+GGG - chr1_4:63935738-63935757 None:intergenic 25.0%
! TTAAAGACATCCACAAATTA+AGG - chr1_4:63935739-63935758 None:intergenic 25.0%
!! ATTGTTGTTACATACTTACA+TGG + chr1_4:63935946-63935965 Msa0177100:intron 25.0%
! TAATACTAACAAATGAGTGT+CGG - chr1_4:63936009-63936028 None:intergenic 25.0%
!! CATTTGTTAGTATTAGGAAA+AGG + chr1_4:63936014-63936033 Msa0177100:intron 25.0%
!! TAGTCAATCTAGTTCAAAAT+AGG + chr1_4:63936043-63936062 Msa0177100:intron 25.0%
!! ATCTAGTTCAAAATAGGAAA+AGG + chr1_4:63936049-63936068 Msa0177100:intron 25.0%
!! TCTAGTTCAAAATAGGAAAA+GGG + chr1_4:63936050-63936069 Msa0177100:intron 25.0%
!!! GTTAAGAGGGTATTTTATTT+TGG + chr1_4:63936094-63936113 Msa0177100:intron 25.0%
! TAAATAAAATCAGATCATGG+AGG + chr1_4:63936120-63936139 Msa0177100:intron 25.0%
! TGTCATAATAAAGTTATTGC+CGG + chr1_4:63936190-63936209 Msa0177100:intron 25.0%
! GTGATCTTTATTGTACAAAA+AGG + chr1_4:63936271-63936290 Msa0177100:intron 25.0%
! TACTTGAATTTCTACTTGTT+TGG + chr1_4:63936314-63936333 Msa0177100:intron 25.0%
! ACTTGAATTTCTACTTGTTT+GGG + chr1_4:63936315-63936334 Msa0177100:intron 25.0%
! GTAACCAAATATATACTTGA+AGG - chr1_4:63936398-63936417 None:intergenic 25.0%
!!! ATTTTCATGATTTTGAGTAG+TGG + chr1_4:63936505-63936524 Msa0177100:intron 25.0%
! CATGTAATAAAATGTTTGCA+GGG + chr1_4:63936922-63936941 Msa0177100:intron 25.0%
! AAAGCAAAAAAAGAACAAGA+TGG + chr1_4:63936990-63937009 Msa0177100:three_prime_UTR 25.0%
!!! TTTACTTTTGAAGATAGACA+AGG + chr1_4:63937064-63937083 Msa0177100:three_prime_UTR 25.0%
!!! TTACTTTTGAAGATAGACAA+GGG + chr1_4:63937065-63937084 Msa0177100:three_prime_UTR 25.0%
! ACAAGTGGTGTAATTAAAAA+GGG + chr1_4:63937112-63937131 Msa0177100:three_prime_UTR 25.0%
! TGTTGTAATTTGGCATTTTC+TGG + chr1_4:63932371-63932390 Msa0177100:five_prime_UTR 30.0%
TGATGTTTACATAGATAGAG+AGG + chr1_4:63932419-63932438 Msa0177100:five_prime_UTR 30.0%
AGAGAAAATTAACACAAGAG+TGG + chr1_4:63932489-63932508 Msa0177100:five_prime_UTR 30.0%
GAGAAAATTAACACAAGAGT+GGG + chr1_4:63932490-63932509 Msa0177100:five_prime_UTR 30.0%
! GTGGGATTTTAGATTACAAA+AGG + chr1_4:63932508-63932527 Msa0177100:five_prime_UTR 30.0%
! GATTTTAGATTACAAAAGGG+TGG + chr1_4:63932512-63932531 Msa0177100:five_prime_UTR 30.0%
CAGTGAAAAACTAATTGTGA+GGG - chr1_4:63932595-63932614 None:intergenic 30.0%
ACAGTGAAAAACTAATTGTG+AGG - chr1_4:63932596-63932615 None:intergenic 30.0%
! TTTGTAGAGAATTTTCACCT+CGG - chr1_4:63932900-63932919 None:intergenic 30.0%
AATGCGTTGAAGAAAAAATC+CGG + chr1_4:63933263-63933282 Msa0177100:CDS 30.0%
! TGTTTGCTACAAAAGATCAA+CGG + chr1_4:63933363-63933382 Msa0177100:CDS 30.0%
!!! TTTTGATTTTCGTTTATGGG+AGG + chr1_4:63933700-63933719 Msa0177100:CDS 30.0%
AGAATAATGAGGTGAAAAAC+AGG + chr1_4:63934307-63934326 Msa0177100:intron 30.0%
!! CAACTTGCTATATACAAACA+AGG - chr1_4:63934438-63934457 None:intergenic 30.0%
! GTTTGTATATAGCAAGTTGA+AGG + chr1_4:63934439-63934458 Msa0177100:intron 30.0%
! TTTTTGTTGGTCCATAGTTT+TGG + chr1_4:63934570-63934589 Msa0177100:intron 30.0%
AAAAGCCTAATCTGAATTAG+TGG + chr1_4:63934806-63934825 Msa0177100:intron 30.0%
AAAGCCTAATCTGAATTAGT+GGG + chr1_4:63934807-63934826 Msa0177100:intron 30.0%
TAGAACCAACCTAAACAAAA+CGG + chr1_4:63935273-63935292 Msa0177100:three_prime_UTR 30.0%
! CTTTCAAACAAAGCTTTTCA+GGG + chr1_4:63935345-63935364 Msa0177100:intron 30.0%
! TTTCAAACAAAGCTTTTCAG+GGG + chr1_4:63935346-63935365 Msa0177100:intron 30.0%
! CCTTGGTAATTTATTACTCA+AGG - chr1_4:63935375-63935394 None:intergenic 30.0%
CCTTGAGTAATAAATTACCA+AGG + chr1_4:63935372-63935391 Msa0177100:intron 30.0%
AAATAAAGATGCTTTCACCT+TGG - chr1_4:63935392-63935411 None:intergenic 30.0%
AGTTTAGAGGTGAAAACAAT+AGG - chr1_4:63935606-63935625 None:intergenic 30.0%
!! CGGTCTTTGGTAATTTTTAA+TGG + chr1_4:63935696-63935715 Msa0177100:intron 30.0%
!! CTTTGGTAATTTTTAATGGG+TGG + chr1_4:63935700-63935719 Msa0177100:intron 30.0%
!! TTGGTAATTTTTAATGGGTG+GGG + chr1_4:63935702-63935721 Msa0177100:intron 30.0%
! TAATCAACACCCTTAATTTG+TGG + chr1_4:63935726-63935745 Msa0177100:intron 30.0%
ATTACTATGATGAATCTGTG+TGG - chr1_4:63935773-63935792 None:intergenic 30.0%
! TCTATATTGTACTGATGATG+AGG - chr1_4:63935898-63935917 None:intergenic 30.0%
! GACACTCATTTGTTAGTATT+AGG + chr1_4:63936008-63936027 Msa0177100:intron 30.0%
TTCAAAATAGGAAAAGGGTA+GGG + chr1_4:63936055-63936074 Msa0177100:intron 30.0%
!!! TATTTTGAAATTACGGGTTG+TGG + chr1_4:63936227-63936246 Msa0177100:intron 30.0%
!! TGTACAAAAAGGTATTTCTG+AGG + chr1_4:63936282-63936301 Msa0177100:intron 30.0%
!! GTACAAAAAGGTATTTCTGA+GGG + chr1_4:63936283-63936302 Msa0177100:intron 30.0%
CTTGAATTTCTACTTGTTTG+GGG + chr1_4:63936316-63936335 Msa0177100:intron 30.0%
TTGAATTTCTACTTGTTTGG+GGG + chr1_4:63936317-63936336 Msa0177100:intron 30.0%
TCCTCCTTCAAGTATATATT+TGG + chr1_4:63936391-63936410 Msa0177100:intron 30.0%
ACCAAATATATACTTGAAGG+AGG - chr1_4:63936395-63936414 None:intergenic 30.0%
ATAATGTAAATTTGGGCAGT+TGG + chr1_4:63936585-63936604 Msa0177100:intron 30.0%
TTTGCAAAGGAATGATGATA+TGG + chr1_4:63936626-63936645 Msa0177100:intron 30.0%
TTGCAAAGGAATGATGATAT+GGG + chr1_4:63936627-63936646 Msa0177100:intron 30.0%
CAAAACAAAAAGTAATGTCG+CGG + chr1_4:63936698-63936717 Msa0177100:intron 30.0%
! CCTGCAAACATTTTATTACA+TGG - chr1_4:63936924-63936943 None:intergenic 30.0%
CCATGTAATAAAATGTTTGC+AGG + chr1_4:63936921-63936940 Msa0177100:intron 30.0%
AATAAAATGTTTGCAGGGAA+TGG + chr1_4:63936927-63936946 Msa0177100:intron 30.0%
GACAAGTGGTGTAATTAAAA+AGG + chr1_4:63937111-63937130 Msa0177100:three_prime_UTR 30.0%
!!! GTACACTTTGTTTTCTTTCT+TGG - chr1_4:63937225-63937244 None:intergenic 30.0%
! ACTACTAGTTGAAGCTTTTT+AGG + chr1_4:63937243-63937262 Msa0177100:three_prime_UTR 30.0%
! CTACTAGTTGAAGCTTTTTA+GGG + chr1_4:63937244-63937263 Msa0177100:three_prime_UTR 30.0%
ATATAAGGAGAAGCAAAGAG+TGG - chr1_4:63932648-63932667 None:intergenic 35.0%
!! TCAAAGTGTTTTCTGGTGAT+TGG + chr1_4:63932678-63932697 Msa0177100:five_prime_UTR 35.0%
CTTGAAAGCAAGTTTCTCTT+TGG + chr1_4:63933047-63933066 Msa0177100:CDS 35.0%
ATATGTATACTCGCAATCGA+CGG + chr1_4:63933191-63933210 Msa0177100:CDS 35.0%
! AAGATAAGCGAGTGTTTTTC+CGG - chr1_4:63933240-63933259 None:intergenic 35.0%
! AACGGTGAAAGAAGCTTTTA+CGG + chr1_4:63933556-63933575 Msa0177100:CDS 35.0%
!! GCTGAAAGACACTTTAAAAC+CGG + chr1_4:63933601-63933620 Msa0177100:CDS 35.0%
GTACTGGATAAATCATAGCA+CGG - chr1_4:63933635-63933654 None:intergenic 35.0%
GTGCTATGATTTATCCAGTA+CGG + chr1_4:63933634-63933653 Msa0177100:CDS 35.0%
ACACGTGCTTCATAATAAAC+AGG + chr1_4:63933853-63933872 Msa0177100:CDS 35.0%
ATTATGATCGTGTTACGAGA+TGG + chr1_4:63933954-63933973 Msa0177100:CDS 35.0%
TACTAATTATGTCCGTGTTC+AGG + chr1_4:63934078-63934097 Msa0177100:CDS 35.0%
TCAAAGAACATACCTGAACA+CGG - chr1_4:63934093-63934112 None:intergenic 35.0%
TTGGTTATAGCGCAAATGAT+TGG + chr1_4:63934146-63934165 Msa0177100:intron 35.0%
!!! TATTTTTTAACTCCGCGCTA+GGG - chr1_4:63934198-63934217 None:intergenic 35.0%
!!! TTATTTTTTAACTCCGCGCT+AGG - chr1_4:63934199-63934218 None:intergenic 35.0%
TAGCGCGGAGTTAAAAAATA+AGG + chr1_4:63934198-63934217 Msa0177100:intron 35.0%
AGCGCGGAGTTAAAAAATAA+GGG + chr1_4:63934199-63934218 Msa0177100:intron 35.0%
GGTTGAGTTTGAGAATAATG+AGG + chr1_4:63934296-63934315 Msa0177100:intron 35.0%
TCTGTGTCACAGAAATGAAA+TGG + chr1_4:63934637-63934656 Msa0177100:intron 35.0%
TATGTTTGTTTGCCGTCTTT+AGG + chr1_4:63934661-63934680 Msa0177100:intron 35.0%
!!! GTATTTTAGAACACACTGAG+GGG - chr1_4:63934768-63934787 None:intergenic 35.0%
!!! GGTATTTTAGAACACACTGA+GGG - chr1_4:63934769-63934788 None:intergenic 35.0%
!!! AGGTATTTTAGAACACACTG+AGG - chr1_4:63934770-63934789 None:intergenic 35.0%
AAGCCTAATCTGAATTAGTG+GGG + chr1_4:63934808-63934827 Msa0177100:intron 35.0%
ATTCCCCACTAATTCAGATT+AGG - chr1_4:63934814-63934833 None:intergenic 35.0%
TGTGATCGAGTTTATTATGC+TGG + chr1_4:63934863-63934882 Msa0177100:intron 35.0%
GATCAATTCATGCTTAGTTC+AGG - chr1_4:63934890-63934909 None:intergenic 35.0%
! GTTTGTTACATGAACATGAC+AGG + chr1_4:63934959-63934978 Msa0177100:intron 35.0%
ATCAGCATCTTTACATTGCT+GGG - chr1_4:63935038-63935057 None:intergenic 35.0%
AGCAATGTAAAGATGCTGAT+GGG + chr1_4:63935038-63935057 Msa0177100:CDS 35.0%
GTAACTTTCAGAAGCTTGAT+TGG + chr1_4:63935135-63935154 Msa0177100:CDS 35.0%
!! TTTAGGTTGGTTCTATAGAC+GGG - chr1_4:63935268-63935287 None:intergenic 35.0%
!! GTTTAGGTTGGTTCTATAGA+CGG - chr1_4:63935269-63935288 None:intergenic 35.0%
!! CCTGAAAAGCTTTGTTTGAA+AGG - chr1_4:63935347-63935366 None:intergenic 35.0%
! CCTTTCAAACAAAGCTTTTC+AGG + chr1_4:63935344-63935363 Msa0177100:intron 35.0%
! AATCTAAGTTGAGCAATGCA+GGG - chr1_4:63935482-63935501 None:intergenic 35.0%
TCTGTAGAAACTCTGTTGAT+GGG + chr1_4:63935558-63935577 Msa0177100:intron 35.0%
AGTGTGTTCGAATAGTTTAG+AGG - chr1_4:63935619-63935638 None:intergenic 35.0%
CAGCTAAATAAACACAAGCA+CGG + chr1_4:63935676-63935695 Msa0177100:intron 35.0%
TGAGAGAACATAAGTTCTGT+CGG + chr1_4:63935979-63935998 Msa0177100:intron 35.0%
GTTCAAAATAGGAAAAGGGT+AGG + chr1_4:63936054-63936073 Msa0177100:intron 35.0%
GAACTTGGAAGATGTTAAGA+GGG + chr1_4:63936081-63936100 Msa0177100:intron 35.0%
ACTACGGAAAAAACTTTGGA+GGG - chr1_4:63936151-63936170 None:intergenic 35.0%
!!! TTTTTTCCGTAGTCCTGAAA+AGG + chr1_4:63936158-63936177 Msa0177100:intron 35.0%
CACAAAGAACCCAATTAGAA+CGG - chr1_4:63936351-63936370 None:intergenic 35.0%
TTCTAATTGGGTTCTTTGTG+TGG + chr1_4:63936351-63936370 Msa0177100:intron 35.0%
GGCATAGATAATTTCCATCT+TGG - chr1_4:63936445-63936464 None:intergenic 35.0%
TCAGAAGTCATCTATGCAAA+GGG - chr1_4:63936466-63936485 None:intergenic 35.0%
TAGTGGTCCTAATATGCTAT+TGG + chr1_4:63936522-63936541 Msa0177100:intron 35.0%
TAAATTTGGGCAGTTGGATA+TGG + chr1_4:63936591-63936610 Msa0177100:intron 35.0%
TGCAAAGGAATGATGATATG+GGG + chr1_4:63936628-63936647 Msa0177100:intron 35.0%
!! GATTTGGTGCAATCAAATTG+TGG - chr1_4:63936795-63936814 None:intergenic 35.0%
GGACTAAGGACCAAATTAAA+AGG - chr1_4:63936832-63936851 None:intergenic 35.0%
AATTTCAAGAGCAAGGACTA+AGG - chr1_4:63936846-63936865 None:intergenic 35.0%
GAATGGTCAAAAAATGTTGC+CGG + chr1_4:63936944-63936963 Msa0177100:three_prime_UTR 35.0%
AATGGTCAAAAAATGTTGCC+GGG + chr1_4:63936945-63936964 Msa0177100:three_prime_UTR 35.0%
AACAAGATGGAGAAAGTGAA+AGG + chr1_4:63937003-63937022 Msa0177100:three_prime_UTR 35.0%
! AAAAGAAGAGTGCAAATAGC+AGG + chr1_4:63937026-63937045 Msa0177100:three_prime_UTR 35.0%
TGTTGAGTGAAAAAGACAAG+TGG + chr1_4:63937097-63937116 Msa0177100:three_prime_UTR 35.0%
AGTGGTGTAATTAAAAAGGG+TGG + chr1_4:63937115-63937134 Msa0177100:three_prime_UTR 35.0%
GTGGTGTAATTAAAAAGGGT+GGG + chr1_4:63937116-63937135 Msa0177100:three_prime_UTR 35.0%
TAATAGCTAGAAAGATGGAG+TGG - chr1_4:63937191-63937210 None:intergenic 35.0%
!! ACTCCATCTTTCTAGCTATT+AGG + chr1_4:63937190-63937209 Msa0177100:intron 35.0%
!! CTCCATCTTTCTAGCTATTA+GGG + chr1_4:63937191-63937210 Msa0177100:intron 35.0%
TACCCTAATAGCTAGAAAGA+TGG - chr1_4:63937196-63937215 None:intergenic 35.0%
AAGAATGAAAATTCAGAGGG+TGG + chr1_4:63937304-63937323 Msa0177100:three_prime_UTR 35.0%
!!! TGGCATTTTCTGGTTCTGTT+CGG + chr1_4:63932381-63932400 Msa0177100:five_prime_UTR 40.0%
CAGAGAGAAACTGAGTCAAA+AGG - chr1_4:63932541-63932560 None:intergenic 40.0%
!! GCAAGAACCAAGCATTGAAA+CGG + chr1_4:63932995-63933014 Msa0177100:CDS 40.0%
AGCTTATCCGTTTCAATGCT+TGG - chr1_4:63933005-63933024 None:intergenic 40.0%
CAACATCAGGTATCTGCTTA+GGG - chr1_4:63933097-63933116 None:intergenic 40.0%
TCAACATCAGGTATCTGCTT+AGG - chr1_4:63933098-63933117 None:intergenic 40.0%
GGTTGTTGAGAATCAACATC+AGG - chr1_4:63933110-63933129 None:intergenic 40.0%
!!! AATCGCCGATTATTTTGACG+TGG + chr1_4:63933301-63933320 Msa0177100:CDS 40.0%
!! TCAACGGAAACCGATTTTCT+CGG + chr1_4:63933379-63933398 Msa0177100:CDS 40.0%
GGATTTCTCAAGAGACTGTT+CGG + chr1_4:63933485-63933504 Msa0177100:CDS 40.0%
TCATAGCACGGTATCAAAAC+CGG - chr1_4:63933623-63933642 None:intergenic 40.0%
! TACTTGAACCGGTTCAAATG+CGG + chr1_4:63933753-63933772 Msa0177100:CDS 40.0%
TCAATAGACCGCATTTGAAC+CGG - chr1_4:63933764-63933783 None:intergenic 40.0%
GTTCAAATGCGGTCTATTGA+TGG + chr1_4:63933764-63933783 Msa0177100:CDS 40.0%
TTGGCCATGAATAATCCTAC+CGG + chr1_4:63933818-63933837 Msa0177100:CDS 40.0%
TCACTTGAAATACGAGCCAT+TGG - chr1_4:63934001-63934020 None:intergenic 40.0%
CACGGACATAATTAGTACTC+CGG - chr1_4:63934075-63934094 None:intergenic 40.0%
ATGTTAAGCGTGTTGAGAGA+TGG + chr1_4:63934247-63934266 Msa0177100:intron 40.0%
GCAAAAGATATCCCCTATGA+TGG - chr1_4:63934416-63934435 None:intergenic 40.0%
! AGCAAGTTGAAGGGTATGTA+TGG + chr1_4:63934449-63934468 Msa0177100:intron 40.0%
! GCAAGTTGAAGGGTATGTAT+GGG + chr1_4:63934450-63934469 Msa0177100:intron 40.0%
! CAAGTTGAAGGGTATGTATG+GGG + chr1_4:63934451-63934470 Msa0177100:CDS 40.0%
!! AGCTGGATTTGGACTTGTTT+TGG + chr1_4:63934480-63934499 Msa0177100:CDS 40.0%
!! GCTGGATTTGGACTTGTTTT+GGG + chr1_4:63934481-63934500 Msa0177100:CDS 40.0%
TTATAGCATGTGGAATGCTG+TGG + chr1_4:63934605-63934624 Msa0177100:intron 40.0%
CTTGCATCTGTATCCACATT+GGG - chr1_4:63935014-63935033 None:intergenic 40.0%
ACTTGCATCTGTATCCACAT+TGG - chr1_4:63935015-63935034 None:intergenic 40.0%
CATCAGCATCTTTACATTGC+TGG - chr1_4:63935039-63935058 None:intergenic 40.0%
CAGCAATGTAAAGATGCTGA+TGG + chr1_4:63935037-63935056 Msa0177100:CDS 40.0%
AATGTGGAGTCAGTTCTGTT+TGG + chr1_4:63935089-63935108 Msa0177100:CDS 40.0%
GCTTGTTTGAAAGCAACAGT+GGG - chr1_4:63935212-63935231 None:intergenic 40.0%
! AGCTTGTTTGAAAGCAACAG+TGG - chr1_4:63935213-63935232 None:intergenic 40.0%
!!! GCTTACCGTTTTGTTTAGGT+TGG - chr1_4:63935281-63935300 None:intergenic 40.0%
!!! GTGTGCTTACCGTTTTGTTT+AGG - chr1_4:63935285-63935304 None:intergenic 40.0%
AAAACGGTAAGCACACTCAT+TGG + chr1_4:63935289-63935308 Msa0177100:intron 40.0%
! GAATCTAAGTTGAGCAATGC+AGG - chr1_4:63935483-63935502 None:intergenic 40.0%
GTCTGTAGAAACTCTGTTGA+TGG + chr1_4:63935557-63935576 Msa0177100:intron 40.0%
CTGTAGAAACTCTGTTGATG+GGG + chr1_4:63935559-63935578 Msa0177100:intron 40.0%
CACAAGTTTCAATGTGTTGC+TGG - chr1_4:63935652-63935671 None:intergenic 40.0%
ATAAACACAAGCACGGTCTT+TGG + chr1_4:63935683-63935702 Msa0177100:intron 40.0%
TGTCAGCTTCTGTGTATTCA+TGG + chr1_4:63935848-63935867 Msa0177100:intron 40.0%
CTTCTGTGTATTCATGGTCA+TGG + chr1_4:63935854-63935873 Msa0177100:intron 40.0%
GAGAGAACATAAGTTCTGTC+GGG + chr1_4:63935980-63935999 Msa0177100:intron 40.0%
AAATAGGAAAAGGGTAGGGT+AGG + chr1_4:63936059-63936078 Msa0177100:intron 40.0%
GGAACTTGGAAGATGTTAAG+AGG + chr1_4:63936080-63936099 Msa0177100:intron 40.0%
! CTACGGAAAAAACTTTGGAG+GGG - chr1_4:63936150-63936169 None:intergenic 40.0%
GACTACGGAAAAAACTTTGG+AGG - chr1_4:63936152-63936171 None:intergenic 40.0%
CAGGACTACGGAAAAAACTT+TGG - chr1_4:63936155-63936174 None:intergenic 40.0%
!! AGGTATTTCTGAGGGCATTT+AGG + chr1_4:63936291-63936310 Msa0177100:intron 40.0%
GATTGAGGACCGTTCTAATT+GGG + chr1_4:63936339-63936358 Msa0177100:intron 40.0%
CTCAGAAGTCATCTATGCAA+AGG - chr1_4:63936467-63936486 None:intergenic 40.0%
TGGTCCTAATATGCTATTGG+AGG + chr1_4:63936525-63936544 Msa0177100:intron 40.0%
GGTCCTAATATGCTATTGGA+GGG + chr1_4:63936526-63936545 Msa0177100:intron 40.0%
TGACCCTCCAATAGCATATT+AGG - chr1_4:63936532-63936551 None:intergenic 40.0%
TGGTGCAATCAAATTGTGGT+TGG - chr1_4:63936791-63936810 None:intergenic 40.0%
AAGATAGACAAGGGTTAGAG+AGG + chr1_4:63937074-63937093 Msa0177100:three_prime_UTR 40.0%
TCACAAGAGGACAGACATTA+TGG + chr1_4:63937162-63937181 Msa0177100:three_prime_UTR 40.0%
AAATTCAGAGGGTGGTGAAT+TGG + chr1_4:63937312-63937331 Msa0177100:three_prime_UTR 40.0%
!! TCTGTTCGGTGCTTGTTTGT+TGG + chr1_4:63932395-63932414 Msa0177100:five_prime_UTR 45.0%
!! GGAGCTAGCTTTGCTACTTT+CGG + chr1_4:63932440-63932459 Msa0177100:five_prime_UTR 45.0%
!! GCTTTGCTACTTTCGGCAAA+AGG + chr1_4:63932447-63932466 Msa0177100:five_prime_UTR 45.0%
TAAGGAGAAGCAAAGAGTGG+AGG - chr1_4:63932645-63932664 None:intergenic 45.0%
GCTACGATGATCAAAAGCTC+TGG + chr1_4:63933069-63933088 Msa0177100:CDS 45.0%
!! CTTCCCACGTTGATTCTTGA+CGG - chr1_4:63933171-63933190 None:intergenic 45.0%
! GATTTTCGCGTTCTGATCAC+CGG - chr1_4:63933285-63933304 None:intergenic 45.0%
GGCTGCCACGTCAAAATAAT+CGG - chr1_4:63933309-63933328 None:intergenic 45.0%
!!! GATTATTTTGACGTGGCAGC+CGG + chr1_4:63933308-63933327 Msa0177100:CDS 45.0%
GGGAAGAAATTCTACCGTCA+GGG + chr1_4:63933434-63933453 Msa0177100:CDS 45.0%
AAATTCTACCGTCAGGGAAC+AGG + chr1_4:63933440-63933459 Msa0177100:CDS 45.0%
! GGTGAAAGAAGCTTTTACGG+CGG + chr1_4:63933559-63933578 Msa0177100:CDS 45.0%
TCCGCACGTGAGAACAAAAA+CGG - chr1_4:63933662-63933681 None:intergenic 45.0%
!! ACGTGCGGATGCTTTAGAAA+CGG + chr1_4:63933673-63933692 Msa0177100:CDS 45.0%
TGAACCGGGTTTACTTGAAC+CGG + chr1_4:63933742-63933761 Msa0177100:CDS 45.0%
! TGAACCGGTTCAAGTAAACC+CGG - chr1_4:63933749-63933768 None:intergenic 45.0%
! TGATGGTGTAACCAAGTGTG+TGG + chr1_4:63933781-63933800 Msa0177100:CDS 45.0%
CATGAATAATCCTACCGGTG+CGG + chr1_4:63933823-63933842 Msa0177100:CDS 45.0%
! GATTTGCTCGTTCTTTCGCT+TGG + chr1_4:63933902-63933921 Msa0177100:CDS 45.0%
TGATCGTGTTACGAGATGGA+AGG + chr1_4:63933958-63933977 Msa0177100:CDS 45.0%
TTGAAATACGAGCCATTGGC+CGG - chr1_4:63933997-63934016 None:intergenic 45.0%
TGAGTCAATTTCACACCAGC+AGG + chr1_4:63934366-63934385 Msa0177100:intron 45.0%
TGTGGGGTTTCTTCCATCAT+AGG + chr1_4:63934400-63934419 Msa0177100:intron 45.0%
GTGGGGTTTCTTCCATCATA+GGG + chr1_4:63934401-63934420 Msa0177100:intron 45.0%
TGGGGTTTCTTCCATCATAG+GGG + chr1_4:63934402-63934421 Msa0177100:intron 45.0%
TATGTATGGGGTGAGATAGC+TGG + chr1_4:63934463-63934482 Msa0177100:CDS 45.0%
ACATGAACATGACAGGCAAG+TGG + chr1_4:63934966-63934985 Msa0177100:intron 45.0%
ACAGGCAAGTGGATCAAGTA+TGG + chr1_4:63934977-63934996 Msa0177100:intron 45.0%
CAGGCAAGTGGATCAAGTAT+GGG + chr1_4:63934978-63934997 Msa0177100:intron 45.0%
AGGCAAGTGGATCAAGTATG+GGG + chr1_4:63934979-63934998 Msa0177100:intron 45.0%
AGCAGATGAGATGTTGAAGC+AGG + chr1_4:63935064-63935083 Msa0177100:CDS 45.0%
GATGTTGAAGCAGGAGAATG+TGG + chr1_4:63935073-63935092 Msa0177100:CDS 45.0%
TGGAGTCAGTTCTGTTTGGA+GGG + chr1_4:63935093-63935112 Msa0177100:CDS 45.0%
CTGTTTGGAGGGAAGAAGAT+TGG + chr1_4:63935104-63935123 Msa0177100:CDS 45.0%
!! AACTTGTTCAGGAGCATCAG+AGG + chr1_4:63935168-63935187 Msa0177100:CDS 45.0%
!! TCTATAGACGGGTTGGGTTT+GGG - chr1_4:63935257-63935276 None:intergenic 45.0%
!! TTCTATAGACGGGTTGGGTT+TGG - chr1_4:63935258-63935277 None:intergenic 45.0%
!! GTTGGTTCTATAGACGGGTT+GGG - chr1_4:63935263-63935282 None:intergenic 45.0%
AAAAGGGTAGGGTAGGAACT+TGG + chr1_4:63936066-63936085 Msa0177100:intron 45.0%
!! GAAGCACCTTTTCAGGACTA+CGG - chr1_4:63936167-63936186 None:intergenic 45.0%
!!! GACATGAGAAGCACCTTTTC+AGG - chr1_4:63936174-63936193 None:intergenic 45.0%
! TGAAATTACGGGTTGTGGAG+TGG + chr1_4:63936232-63936251 Msa0177100:intron 45.0%
TCTACTTGTTTGGGGGATTG+AGG + chr1_4:63936324-63936343 Msa0177100:intron 45.0%
GGATTGAGGACCGTTCTAAT+TGG + chr1_4:63936338-63936357 Msa0177100:intron 45.0%
GGTGTCTTCAACAACCAAGA+TGG + chr1_4:63936428-63936447 Msa0177100:intron 45.0%
ATGATATGGGGACAACAACG+TGG + chr1_4:63936640-63936659 Msa0177100:intron 45.0%
AAAATGTTGCCGGGTGAAGA+CGG + chr1_4:63936954-63936973 Msa0177100:three_prime_UTR 45.0%
CCTATATATCCGTCTTCACC+CGG - chr1_4:63936966-63936985 None:intergenic 45.0%
GGTGAAGACGGATATATAGG+AGG + chr1_4:63936966-63936985 Msa0177100:three_prime_UTR 45.0%
! AGAAGAGTGCAAATAGCAGG+TGG + chr1_4:63937029-63937048 Msa0177100:three_prime_UTR 45.0%
TGGGATACTTTGCTCACAAG+AGG + chr1_4:63937149-63937168 Msa0177100:three_prime_UTR 45.0%
GAGAAGCAAAGAGTGGAGGA+GGG - chr1_4:63932641-63932660 None:intergenic 50.0%
TTCAATAGGCGTCACTTCCG+AGG + chr1_4:63932880-63932899 Msa0177100:intron 50.0%
TGTATACTCGCAATCGACGG+AGG + chr1_4:63933194-63933213 Msa0177100:CDS 50.0%
!! ACGGAAACCGATTTTCTCGG+CGG + chr1_4:63933382-63933401 Msa0177100:CDS 50.0%
GTGTCATCCGCCGAGAAAAT+CGG - chr1_4:63933392-63933411 None:intergenic 50.0%
GGGGAAGAAATTCTACCGTC+AGG + chr1_4:63933433-63933452 Msa0177100:CDS 50.0%
TTCCATTGCCTGTTCCCTGA+CGG - chr1_4:63933451-63933470 None:intergenic 50.0%
CTCAAGAGACTGTTCGGTAG+CGG + chr1_4:63933491-63933510 Msa0177100:CDS 50.0%
! GAAGCTTTTACGGCGGAGAA+TGG + chr1_4:63933566-63933585 Msa0177100:CDS 50.0%
!!! GCCGTTTTTGTTCTCACGTG+CGG + chr1_4:63933658-63933677 Msa0177100:CDS 50.0%
! GGAGGTGTGTAGAGCAACTT+CGG + chr1_4:63933718-63933737 Msa0177100:CDS 50.0%
TAGAGCAACTTCGGCTGAAC+CGG + chr1_4:63933727-63933746 Msa0177100:CDS 50.0%
TGGTGTAACCAAGTGTGTGG+CGG + chr1_4:63933784-63933803 Msa0177100:CDS 50.0%
! CGCACCGGTAGGATTATTCA+TGG - chr1_4:63933825-63933844 None:intergenic 50.0%
CTCGTTCTTTCGCTTGGAAC+CGG + chr1_4:63933908-63933927 Msa0177100:CDS 50.0%
GTTGACCTCCAACAACTGAC+CGG - chr1_4:63933930-63933949 None:intergenic 50.0%
TGTTACGAGATGGAAGGCGA+AGG + chr1_4:63933964-63933983 Msa0177100:CDS 50.0%
GAGATGGAAGGCGAAGGATT+GGG + chr1_4:63933970-63933989 Msa0177100:CDS 50.0%
TGAAATACGAGCCATTGGCC+GGG - chr1_4:63933996-63934015 None:intergenic 50.0%
CTGATCAACAAGGTCAGCAG+AGG - chr1_4:63934026-63934045 None:intergenic 50.0%
CTCTGCTGACCTTGTTGATC+AGG + chr1_4:63934024-63934043 Msa0177100:CDS 50.0%
TAGCAACGGCCTGATCAACA+AGG - chr1_4:63934036-63934055 None:intergenic 50.0%
TGTTGATCAGGCCGTTGCTA+TGG + chr1_4:63934036-63934055 Msa0177100:CDS 50.0%
ATGCCCAAACGCCATAGCAA+CGG - chr1_4:63934050-63934069 None:intergenic 50.0%
TTCACACCAGCAGGAGAGTA+AGG + chr1_4:63934375-63934394 Msa0177100:intron 50.0%
TGGGGTGAGATAGCTGGATT+TGG + chr1_4:63934469-63934488 Msa0177100:CDS 50.0%
GGATCAAGTATGGGGCAATG+TGG + chr1_4:63934987-63935006 Msa0177100:CDS 50.0%
GTGGAGTCAGTTCTGTTTGG+AGG + chr1_4:63935092-63935111 Msa0177100:CDS 50.0%
!! CAGAAGCTTGATTGGCTTGC+TGG + chr1_4:63935143-63935162 Msa0177100:CDS 50.0%
! GCTTGCTGGAGAACTTGTTC+AGG + chr1_4:63935157-63935176 Msa0177100:CDS 50.0%
!! TTGTTCAGGAGCATCAGAGG+AGG + chr1_4:63935171-63935190 Msa0177100:CDS 50.0%
!! TTGGGCTTCTAGGTGGGTTT+TGG - chr1_4:63935239-63935258 None:intergenic 50.0%
TTGGGTTTGGGCTTCTAGGT+GGG - chr1_4:63935245-63935264 None:intergenic 50.0%
!! GGTTGGTTCTATAGACGGGT+TGG - chr1_4:63935264-63935283 None:intergenic 50.0%
! CGGAAAAAACTTTGGAGGGG+TGG - chr1_4:63936147-63936166 None:intergenic 50.0%
TATGCTATTGGAGGGTCACG+TGG + chr1_4:63936534-63936553 Msa0177100:intron 50.0%
ATGCTATTGGAGGGTCACGT+GGG + chr1_4:63936535-63936554 Msa0177100:intron 50.0%
CCGGGTGAAGACGGATATAT+AGG + chr1_4:63936963-63936982 Msa0177100:three_prime_UTR 50.0%
AAAGGGTGGGAAGATCTCTG+TGG + chr1_4:63937129-63937148 Msa0177100:three_prime_UTR 50.0%
AAGGGTGGGAAGATCTCTGT+GGG + chr1_4:63937130-63937149 Msa0177100:three_prime_UTR 50.0%
GGAGAAGCAAAGAGTGGAGG+AGG - chr1_4:63932642-63932661 None:intergenic 55.0%
GACGGCGGAAACAGAGTCAA+CGG - chr1_4:63933153-63933172 None:intergenic 55.0%
TCCGCCGTCAAGAATCAACG+TGG + chr1_4:63933164-63933183 Msa0177100:CDS 55.0%
!! CCCACGTTGATTCTTGACGG+CGG - chr1_4:63933168-63933187 None:intergenic 55.0%
CCGCCGTCAAGAATCAACGT+GGG + chr1_4:63933165-63933184 Msa0177100:CDS 55.0%
ATACTCGCAATCGACGGAGG+AGG + chr1_4:63933197-63933216 Msa0177100:CDS 55.0%
CGTGAAAATACCTCCGACGC+CGG - chr1_4:63933336-63933355 None:intergenic 55.0%
!!! CGGCGTCGGAGGTATTTTCA+CGG + chr1_4:63933334-63933353 Msa0177100:CDS 55.0%
! TTTTCTCGGCGGATGACACG+TGG + chr1_4:63933393-63933412 Msa0177100:CDS 55.0%
! GGATGACACGTGGCGGTTTT+TGG + chr1_4:63933403-63933422 Msa0177100:CDS 55.0%
!! TGACACGTGGCGGTTTTTGG+CGG + chr1_4:63933406-63933425 Msa0177100:CDS 55.0%
!!! TGGCGGTTTTTGGCGGAACA+GGG + chr1_4:63933413-63933432 Msa0177100:CDS 55.0%
TACCGTCAGGGAACAGGCAA+TGG + chr1_4:63933446-63933465 Msa0177100:CDS 55.0%
GGAACAGGCAATGGAAGCTC+CGG + chr1_4:63933455-63933474 Msa0177100:CDS 55.0%
CTTGAGAAATCCTCTCCCGC+CGG - chr1_4:63933477-63933496 None:intergenic 55.0%
! AAGAGACTGTTCGGTAGCGG+AGG + chr1_4:63933494-63933513 Msa0177100:CDS 55.0%
GAGTTCCGTCGAATCTGCGA+CGG + chr1_4:63933520-63933539 Msa0177100:CDS 55.0%
GAACAAAAACGGCGCCGTAC+TGG - chr1_4:63933651-63933670 None:intergenic 55.0%
AGAGCAACTTCGGCTGAACC+GGG + chr1_4:63933728-63933747 Msa0177100:CDS 55.0%
ACCAAGTGTGTGGCGGTTGA+TGG + chr1_4:63933791-63933810 Msa0177100:CDS 55.0%
ACCATCAACCGCCACACACT+TGG - chr1_4:63933795-63933814 None:intergenic 55.0%
!! AAGTGTGTGGCGGTTGATGG+TGG + chr1_4:63933794-63933813 Msa0177100:CDS 55.0%
!! TGTGGCGGTTGATGGTGGTT+TGG + chr1_4:63933799-63933818 Msa0177100:CDS 55.0%
AGGAGTTTCCGTTCGTGCGA+GGG + chr1_4:63933873-63933892 Msa0177100:CDS 55.0%
GCTTGGAACCGGTCAGTTGT+TGG + chr1_4:63933919-63933938 Msa0177100:CDS 55.0%
TGGAACCGGTCAGTTGTTGG+AGG + chr1_4:63933922-63933941 Msa0177100:CDS 55.0%
CGAGATGGAAGGCGAAGGAT+TGG + chr1_4:63933969-63933988 Msa0177100:CDS 55.0%
AGGCCGTTGCTATGGCGTTT+GGG + chr1_4:63934044-63934063 Msa0177100:CDS 55.0%
! CTATGGCGTTTGGGCATTGC+CGG + chr1_4:63934053-63934072 Msa0177100:CDS 55.0%
! GAGTGTTGCAAACCCTAGCG+CGG + chr1_4:63934183-63934202 Msa0177100:intron 55.0%
AGCAGGAGAGTAAGGCGTGT+GGG + chr1_4:63934383-63934402 Msa0177100:intron 55.0%
GTTGGGTTTGGGCTTCTAGG+TGG - chr1_4:63935246-63935265 None:intergenic 55.0%
GGACAACAACGTGGCAAGAC+AGG + chr1_4:63936649-63936668 Msa0177100:intron 55.0%
AACAGAGTCAACGGCCGTGG+CGG - chr1_4:63933144-63933163 None:intergenic 60.0%
GGAAACAGAGTCAACGGCCG+TGG - chr1_4:63933147-63933166 None:intergenic 60.0%
! ATCGACGGAGGAGGTATGCG+AGG + chr1_4:63933206-63933225 Msa0177100:CDS 60.0%
! GGTATGCGAGGCATTCTCGC+CGG + chr1_4:63933218-63933237 Msa0177100:CDS 60.0%
!!! GTGGCGGTTTTTGGCGGAAC+AGG + chr1_4:63933412-63933431 Msa0177100:CDS 60.0%
!!! GGCGGTTTTTGGCGGAACAG+GGG + chr1_4:63933414-63933433 Msa0177100:CDS 60.0%
ACAGGCAATGGAAGCTCCGG+CGG + chr1_4:63933458-63933477 Msa0177100:CDS 60.0%
TTCCGTCGAATCTGCGACGG+CGG + chr1_4:63933523-63933542 Msa0177100:CDS 60.0%
GACGGCGGGGATGGAGAAAA+CGG + chr1_4:63933538-63933557 Msa0177100:CDS 60.0%
! TGTGTAATCGCCGCACCGGT+AGG - chr1_4:63933836-63933855 None:intergenic 60.0%
CACGTGTGTAATCGCCGCAC+CGG - chr1_4:63933840-63933859 None:intergenic 60.0%
CAGGAGTTTCCGTTCGTGCG+AGG + chr1_4:63933872-63933891 Msa0177100:CDS 60.0%
GGAGTTTCCGTTCGTGCGAG+GGG + chr1_4:63933874-63933893 Msa0177100:CDS 60.0%
CAGGCCGTTGCTATGGCGTT+TGG + chr1_4:63934043-63934062 Msa0177100:CDS 60.0%
CACACGCCTTACTCTCCTGC+TGG - chr1_4:63934384-63934403 None:intergenic 60.0%
CAGCAGGAGAGTAAGGCGTG+TGG + chr1_4:63934382-63934401 Msa0177100:intron 60.0%
GCAGGAGAGTAAGGCGTGTG+GGG + chr1_4:63934384-63934403 Msa0177100:intron 60.0%
GGGGCAATGTGGTCCCAATG+TGG + chr1_4:63934998-63935017 Msa0177100:CDS 60.0%
! CGGGTTGGGTTTGGGCTTCT+AGG - chr1_4:63935249-63935268 None:intergenic 60.0%
TTTGACGTGGCAGCCGGTGC+CGG + chr1_4:63933314-63933333 Msa0177100:CDS 65.0%
AATACCTCCGACGCCGGCAC+CGG - chr1_4:63933330-63933349 None:intergenic 65.0%
TCTCGGCGGATGACACGTGG+CGG + chr1_4:63933396-63933415 Msa0177100:CDS 65.0%
CAGGCAATGGAAGCTCCGGC+GGG + chr1_4:63933459-63933478 Msa0177100:CDS 65.0%
AATGGAAGCTCCGGCGGGAG+AGG + chr1_4:63933464-63933483 Msa0177100:CDS 65.0%
TCCGTCGAATCTGCGACGGC+GGG + chr1_4:63933524-63933543 Msa0177100:CDS 65.0%
GTTTCCGTTCGTGCGAGGGG+TGG + chr1_4:63933877-63933896 Msa0177100:CDS 65.0%
TCCTCCACCCCTCGCACGAA+CGG - chr1_4:63933884-63933903 None:intergenic 65.0%
GGAAGGCGAAGGATTGGGCC+CGG + chr1_4:63933975-63933994 Msa0177100:CDS 65.0%
GAAGGATTGGGCCCGGCCAA+TGG + chr1_4:63933982-63934001 Msa0177100:CDS 65.0%
ACCACCAACCGTCGCCGCCA+CGG + chr1_4:63933127-63933146 Msa0177100:CDS 70.0%
CCCCGCCGTCGCAGATTCGA+CGG - chr1_4:63933528-63933547 None:intergenic 70.0%
CCGTCGAATCTGCGACGGCG+GGG + chr1_4:63933525-63933544 Msa0177100:CDS 70.0%
CGAATCTGCGACGGCGGGGA+TGG + chr1_4:63933529-63933548 Msa0177100:CDS 70.0%
TCCGTTCGTGCGAGGGGTGG+AGG + chr1_4:63933880-63933899 Msa0177100:CDS 70.0%
GTCAACGGCCGTGGCGGCGA+CGG - chr1_4:63933138-63933157 None:intergenic 75.0%
! GCCGTGGCGGCGACGGTTGG+TGG - chr1_4:63933131-63933150 None:intergenic 80.0%
! ACGGCCGTGGCGGCGACGGT+TGG - chr1_4:63933134-63933153 None:intergenic 80.0%
!!! GTGGCAGCCGGTGCCGGCGT+CGG + chr1_4:63933320-63933339 Msa0177100:CDS 80.0%
!!! GCAGCCGGTGCCGGCGTCGG+AGG + chr1_4:63933323-63933342 Msa0177100:CDS 85.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 63932367 63937355 63932367 ID=Msa0177100;Name=Msa0177100
chr1_4 mRNA 63932367 63937355 63932367 ID=Msa0177100-mRNA-1;Parent=Msa0177100;Name=Msa0177100-mRNA-1;_AED=0.18;_eAED=0.18;_QI=442|0.6|0.83|0.83|0.4|0.16|6|435|488
chr1_4 exon 63932367 63932727 63932367 ID=Msa0177100-mRNA-1:exon:20741;Parent=Msa0177100-mRNA-1
chr1_4 exon 63932888 63934099 63932888 ID=Msa0177100-mRNA-1:exon:20742;Parent=Msa0177100-mRNA-1
chr1_4 exon 63934451 63934516 63934451 ID=Msa0177100-mRNA-1:exon:20743;Parent=Msa0177100-mRNA-1
chr1_4 exon 63934981 63935294 63934981 ID=Msa0177100-mRNA-1:exon:20744;Parent=Msa0177100-mRNA-1
chr1_4 exon 63936943 63937190 63936943 ID=Msa0177100-mRNA-1:exon:20745;Parent=Msa0177100-mRNA-1
chr1_4 exon 63937213 63937355 63937213 ID=Msa0177100-mRNA-1:exon:20746;Parent=Msa0177100-mRNA-1
chr1_4 five_prime_UTR 63932367 63932727 63932367 ID=Msa0177100-mRNA-1:five_prime_utr;Parent=Msa0177100-mRNA-1
chr1_4 five_prime_UTR 63932888 63932968 63932888 ID=Msa0177100-mRNA-1:five_prime_utr;Parent=Msa0177100-mRNA-1
chr1_4 CDS 63932969 63934099 63932969 ID=Msa0177100-mRNA-1:cds;Parent=Msa0177100-mRNA-1
chr1_4 CDS 63934451 63934516 63934451 ID=Msa0177100-mRNA-1:cds;Parent=Msa0177100-mRNA-1
chr1_4 CDS 63934981 63935250 63934981 ID=Msa0177100-mRNA-1:cds;Parent=Msa0177100-mRNA-1
chr1_4 three_prime_UTR 63935251 63935294 63935251 ID=Msa0177100-mRNA-1:three_prime_utr;Parent=Msa0177100-mRNA-1
chr1_4 three_prime_UTR 63936943 63937190 63936943 ID=Msa0177100-mRNA-1:three_prime_utr;Parent=Msa0177100-mRNA-1
chr1_4 three_prime_UTR 63937213 63937355 63937213 ID=Msa0177100-mRNA-1:three_prime_utr;Parent=Msa0177100-mRNA-1
Gene Sequence

>Msa0177100

ATGGATTCTAGTGATCAATTTGAAATGCAAGAACCAAGCATTGAAACGGATAAGCTCAGTTACGAAATCTTTTCTATTCTTGAAAGCAAGTTTCTCTTTGGCTACGATGATCAAAAGCTCTGGTTCCCTAAGCAGATACCTGATGTTGATTCTCAACAACCACCAACCGTCGCCGCCACGGCCGTTGACTCTGTTTCCGCCGTCAAGAATCAACGTGGGAAGATATGTATACTCGCAATCGACGGAGGAGGTATGCGAGGCATTCTCGCCGGAAAAACACTCGCTTATCTTGAGAATGCGTTGAAGAAAAAATCCGGTGATCAGAACGCGAAAATCGCCGATTATTTTGACGTGGCAGCCGGTGCCGGCGTCGGAGGTATTTTCACGGCGATGTTGTTTGCTACAAAAGATCAACGGAAACCGATTTTCTCGGCGGATGACACGTGGCGGTTTTTGGCGGAACAGGGGAAGAAATTCTACCGTCAGGGAACAGGCAATGGAAGCTCCGGCGGGAGAGGATTTCTCAAGAGACTGTTCGGTAGCGGAGGTTCGAGTTCCGTCGAATCTGCGACGGCGGGGATGGAGAAAACGGTGAAAGAAGCTTTTACGGCGGAGAATGGTCGTTGTTTAACGCTGAAAGACACTTTAAAACCGGTTTTGATACCGTGCTATGATTTATCCAGTACGGCGCCGTTTTTGTTCTCACGTGCGGATGCTTTAGAAACGGATAGTTTTGATTTTCGTTTATGGGAGGTGTGTAGAGCAACTTCGGCTGAACCGGGTTTACTTGAACCGGTTCAAATGCGGTCTATTGATGGTGTAACCAAGTGTGTGGCGGTTGATGGTGGTTTGGCCATGAATAATCCTACCGGTGCGGCGATTACACACGTGCTTCATAATAAACAGGAGTTTCCGTTCGTGCGAGGGGTGGAGGATTTGCTCGTTCTTTCGCTTGGAACCGGTCAGTTGTTGGAGGTCAACTATGATTATGATCGTGTTACGAGATGGAAGGCGAAGGATTGGGCCCGGCCAATGGCTCGTATTTCAAGTGATGCCTCTGCTGACCTTGTTGATCAGGCCGTTGCTATGGCGTTTGGGCATTGCCGGAGTACTAATTATGTCCGTGTTCAGCAAGTTGAAGGGTATGTATGGGGTGAGATAGCTGGATTTGGACTTGTTTTGGGAATATCTCTTGATGCAAGTGGATCAAGTATGGGGCAATGTGGTCCCAATGTGGATACAGATGCAAGTCCCAGCAATGTAAAGATGCTGATGGGAATAGCAGATGAGATGTTGAAGCAGGAGAATGTGGAGTCAGTTCTGTTTGGAGGGAAGAAGATTGGAGAGCAGAGTAACTTTCAGAAGCTTGATTGGCTTGCTGGAGAACTTGTTCAGGAGCATCAGAGGAGGAGTTGCAGAATAGCTCCCACTGTTGCTTTCAAACAAGCTACACCAAAACCCACCTAG
Protein sequence

>Msa0177100

MDSSDQFEMQEPSIETDKLSYEIFSILESKFLFGYDDQKLWFPKQIPDVDSQQPPTVAATAVDSVSAVKNQRGKICILAIDGGGMRGILAGKTLAYLENALKKKSGDQNAKIADYFDVAAGAGVGGIFTAMLFATKDQRKPIFSADDTWRFLAEQGKKFYRQGTGNGSSGGRGFLKRLFGSGGSSSVESATAGMEKTVKEAFTAENGRCLTLKDTLKPVLIPCYDLSSTAPFLFSRADALETDSFDFRLWEVCRATSAEPGLLEPVQMRSIDGVTKCVAVDGGLAMNNPTGAAITHVLHNKQEFPFVRGVEDLLVLSLGTGQLLEVNYDYDRVTRWKAKDWARPMARISSDASADLVDQAVAMAFGHCRSTNYVRVQQVEGYVWGEIAGFGLVLGISLDASGSSMGQCGPNVDTDASPSNVKMLMGIADEMLKQENVESVLFGGKKIGEQSNFQKLDWLAGELVQEHQRRSCRIAPTVAFKQATPKPT*