Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036970 | sp|Q9SV43|PLP7_ARATH | 68.120 | 367 | 84 | 5 | 1 | 367 | 49 | 382 | 1.85e-175 | 500 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036970 | Msa0138950 | 0.808629 | 2.819116e-50 | -8.615850e-47 |
| Msa0036970 | Msa0177100 | 0.881297 | 2.697403e-70 | -8.615850e-47 |
| Msa0036970 | Msa0236770 | 0.831211 | 1.897876e-55 | -8.615850e-47 |
| Msa0036970 | Msa0301810 | 0.807597 | 4.677814e-50 | -8.615850e-47 |
| Msa0036970 | Msa0307130 | 0.872630 | 2.744094e-67 | -8.615850e-47 |
| Msa0036970 | Msa0339280 | 0.807864 | 4.104978e-50 | -8.615850e-47 |
| Msa0036970 | Msa0341230 | 0.802270 | 6.074476e-49 | -8.615850e-47 |
| Msa0036970 | Msa0424050 | 0.807220 | 5.622194e-50 | -8.615850e-47 |
| Msa0036970 | Msa0789560 | 0.825661 | 4.151463e-54 | -8.615850e-47 |
| Msa0036970 | Msa1095790 | 0.804886 | 1.741586e-49 | -8.615850e-47 |
| Msa0036970 | Msa1342230 | 0.916116 | 2.620394e-85 | -8.615850e-47 |
| Msa0036970 | Msa1435260 | 0.805092 | 1.577003e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036970 | MtrunA17_Chr1g0199801 | 97.548 | 367 | 6 | 1 | 1 | 367 | 9 | 372 | 0.0 | 736 |
| Msa0036970 | MtrunA17_Chr2g0292051 | 46.995 | 366 | 141 | 10 | 3 | 367 | 21 | 334 | 2.18e-99 | 301 |
| Msa0036970 | MtrunA17_Chr1g0185551 | 43.934 | 305 | 146 | 6 | 66 | 367 | 29 | 311 | 1.02e-79 | 249 |
| Msa0036970 | MtrunA17_Chr7g0259871 | 43.092 | 304 | 149 | 5 | 66 | 367 | 29 | 310 | 5.08e-78 | 245 |
| Msa0036970 | MtrunA17_Chr5g0402441 | 31.056 | 322 | 182 | 11 | 67 | 367 | 16 | 318 | 1.68e-33 | 128 |
| Msa0036970 | MtrunA17_Chr1g0153781 | 28.125 | 320 | 197 | 11 | 67 | 367 | 21 | 326 | 5.46e-33 | 127 |
| Msa0036970 | MtrunA17_Chr5g0402451 | 30.938 | 320 | 188 | 9 | 67 | 367 | 10 | 315 | 7.55e-33 | 126 |
| Msa0036970 | MtrunA17_Chr3g0133691 | 30.897 | 301 | 173 | 11 | 86 | 367 | 39 | 323 | 6.99e-31 | 121 |
| Msa0036970 | MtrunA17_Chr3g0133681 | 29.097 | 299 | 181 | 9 | 86 | 367 | 39 | 323 | 1.02e-30 | 121 |
| Msa0036970 | MtrunA17_Chr8g0335581 | 28.115 | 313 | 198 | 7 | 67 | 370 | 21 | 315 | 4.03e-27 | 111 |
| Msa0036970 | MtrunA17_Chr8g0335611 | 30.503 | 318 | 185 | 11 | 67 | 370 | 32 | 327 | 3.64e-26 | 108 |
| Msa0036970 | MtrunA17_Chr8g0335621 | 30.503 | 318 | 185 | 11 | 67 | 370 | 63 | 358 | 5.69e-26 | 108 |
| Msa0036970 | MtrunA17_Chr8g0335591 | 28.834 | 326 | 182 | 11 | 23 | 338 | 7 | 292 | 2.05e-25 | 106 |
| Msa0036970 | MtrunA17_Chr8g0335631 | 30.462 | 325 | 174 | 11 | 67 | 370 | 32 | 325 | 1.56e-20 | 92.4 |
| Msa0036970 | MtrunA17_Chr8g0335651 | 31.169 | 308 | 175 | 13 | 67 | 367 | 33 | 310 | 8.00e-20 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036970 | AT3G54950.1 | 68.120 | 367 | 84 | 5 | 1 | 367 | 49 | 382 | 1.88e-176 | 500 |
| Msa0036970 | AT2G39220.1 | 66.846 | 371 | 106 | 5 | 1 | 367 | 38 | 395 | 5.27e-174 | 494 |
| Msa0036970 | AT4G29800.1 | 63.172 | 372 | 119 | 4 | 9 | 367 | 53 | 419 | 1.15e-157 | 454 |
| Msa0036970 | AT4G29800.2 | 63.172 | 372 | 119 | 4 | 9 | 367 | 53 | 419 | 1.16e-157 | 454 |
| Msa0036970 | AT3G63200.1 | 45.695 | 302 | 147 | 4 | 66 | 367 | 29 | 313 | 2.44e-83 | 259 |
| Msa0036970 | AT4G37060.1 | 31.546 | 317 | 188 | 9 | 67 | 367 | 19 | 322 | 5.45e-37 | 139 |
| Msa0036970 | AT4G37070.3 | 30.284 | 317 | 192 | 9 | 67 | 367 | 19 | 322 | 7.16e-35 | 132 |
| Msa0036970 | AT4G37070.1 | 30.284 | 317 | 192 | 9 | 67 | 367 | 19 | 322 | 7.16e-35 | 132 |
| Msa0036970 | AT4G37070.2 | 30.284 | 317 | 192 | 9 | 67 | 367 | 19 | 322 | 1.57e-34 | 132 |
| Msa0036970 | AT2G26560.1 | 31.861 | 317 | 187 | 11 | 67 | 367 | 19 | 322 | 1.24e-31 | 124 |
| Msa0036970 | AT4G37060.2 | 29.107 | 347 | 188 | 10 | 67 | 367 | 19 | 353 | 2.43e-31 | 124 |
| Msa0036970 | AT4G37070.4 | 28.391 | 317 | 187 | 9 | 67 | 367 | 19 | 311 | 7.61e-29 | 115 |
| Msa0036970 | AT5G43590.1 | 30.312 | 320 | 185 | 8 | 67 | 367 | 14 | 314 | 6.75e-26 | 108 |
| Msa0036970 | AT5G43590.2 | 30.312 | 320 | 185 | 8 | 67 | 367 | 81 | 381 | 1.64e-25 | 107 |
| Msa0036970 | AT4G37050.1 | 29.321 | 324 | 194 | 11 | 67 | 367 | 35 | 346 | 6.78e-25 | 105 |
Find 111 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGCCGTTGCTATGGCGTT+TGG | 0.279175 | 1_1:+65869059 | Msa0036970:CDS |
| CTTGAAAGCAAGTTTCTCTT+TGG | 0.290842 | 1_1:+65868063 | Msa0036970:CDS |
| CTATGGCGTTTGGGCATTGC+CGG | 0.308860 | 1_1:+65869069 | Msa0036970:CDS |
| AGCTTATCCGTTTCAATGCT+TGG | 0.316802 | 1_1:-65868018 | None:intergenic |
| CTCGTTCTTTCGCTTGGAAC+CGG | 0.334222 | 1_1:+65868924 | Msa0036970:CDS |
| TAGAGCAACTTCGGCTGAAC+CGG | 0.359167 | 1_1:+65868743 | Msa0036970:CDS |
| TGTTGAATTGATAAAAGTTA+AGG | 0.373787 | 1_1:+65869350 | Msa0036970:CDS |
| AGGCCGTTGCTATGGCGTTT+GGG | 0.395216 | 1_1:+65869060 | Msa0036970:CDS |
| TCAACATCAGGTATCTGCTT+AGG | 0.397587 | 1_1:-65868111 | None:intergenic |
| GTTGAATTGATAAAAGTTAA+GGG | 0.402965 | 1_1:+65869351 | Msa0036970:CDS |
| CTCCGCTGACCTTGTTGATC+AGG | 0.405823 | 1_1:+65869040 | Msa0036970:CDS |
| AAATTCTACCGTCAGGGAAC+AGG | 0.418583 | 1_1:+65868456 | Msa0036970:CDS |
| TTTGACGTGGCAGCCGGTGC+CGG | 0.419564 | 1_1:+65868330 | Msa0036970:CDS |
| GCCGTGGCGGCGACGGTTGG+TGG | 0.422292 | 1_1:-65868144 | None:intergenic |
| GCTTGGAACCGGTCAGTTGT+TGG | 0.425684 | 1_1:+65868935 | Msa0036970:CDS |
| TCCGTTCGTGCGAGGGGTGG+AGG | 0.430043 | 1_1:+65868896 | Msa0036970:CDS |
| GGAACAGGCAATGGAAGCTC+CGG | 0.443643 | 1_1:+65868471 | Msa0036970:CDS |
| GGCTGCCACGTCAAAATAAT+CGG | 0.443651 | 1_1:-65868322 | None:intergenic |
| TCAATAGACCGCATTTGAAC+CGG | 0.444590 | 1_1:-65868777 | None:intergenic |
| GCTGAAAGACACTTTAAAAC+CGG | 0.447229 | 1_1:+65868617 | Msa0036970:CDS |
| GTTCAAATGCGGTCTATTGA+TGG | 0.451860 | 1_1:+65868780 | Msa0036970:CDS |
| TTCCGTCGAATCTGCGACGG+CGG | 0.453716 | 1_1:+65868539 | Msa0036970:CDS |
| AATGGAAGCTCCGGCGGGAG+AGG | 0.454766 | 1_1:+65868480 | Msa0036970:CDS |
| TGAACCGGGTTTACTTGAAC+CGG | 0.456051 | 1_1:+65868758 | Msa0036970:CDS |
| TTGAAATACGAGCCATTGGC+CGG | 0.457567 | 1_1:-65869010 | None:intergenic |
| GTGTCATCCGCCGAGAAAAT+CGG | 0.458396 | 1_1:-65868405 | None:intergenic |
| CTTCCCACGTTGATTCTTGA+CGG | 0.463155 | 1_1:-65868184 | None:intergenic |
| TCCGTCGAATCTGCGACGGC+GGG | 0.463860 | 1_1:+65868540 | Msa0036970:CDS |
| ACACGTGCTTCATAATAAAC+AGG | 0.466024 | 1_1:+65868869 | Msa0036970:CDS |
| CAACATCAGGTATCTGCTTA+GGG | 0.467164 | 1_1:-65868110 | None:intergenic |
| CGAGATGGAAGGCGAAGGAT+TGG | 0.469895 | 1_1:+65868985 | Msa0036970:CDS |
| ACCAAGTGTGTGGCGGTTGA+TGG | 0.471814 | 1_1:+65868807 | Msa0036970:CDS |
| GGGGAAGAAATTCTACCGTC+AGG | 0.473318 | 1_1:+65868449 | Msa0036970:CDS |
| GATTTGCTCGTTCTTTCGCT+TGG | 0.477265 | 1_1:+65868918 | Msa0036970:CDS |
| TACCGTCAGGGAACAGGCAA+TGG | 0.479650 | 1_1:+65868462 | Msa0036970:CDS |
| CGAATCTGCGACGGCGGGGA+TGG | 0.480183 | 1_1:+65868545 | Msa0036970:CDS |
| ACAGGCAATGGAAGCTCCGG+CGG | 0.482595 | 1_1:+65868474 | Msa0036970:CDS |
| GTCAACGGCCGTGGCGGCGA+CGG | 0.484836 | 1_1:-65868151 | None:intergenic |
| GGATTTCTCAAGAGACTGTT+CGG | 0.485627 | 1_1:+65868501 | Msa0036970:CDS |
| GTGGCAGCCGGTGCCGGCGT+CGG | 0.487538 | 1_1:+65868336 | Msa0036970:CDS |
| CGCACCGGTAGGATTATTCA+TGG | 0.488768 | 1_1:-65868838 | None:intergenic |
| TGTGGCGGTTGATGGTGGTT+TGG | 0.489151 | 1_1:+65868815 | Msa0036970:CDS |
| TCATAGCACGGTATCAAAAC+CGG | 0.489644 | 1_1:-65868636 | None:intergenic |
| TGTTGATCAGGCCGTTGCTA+TGG | 0.491992 | 1_1:+65869052 | Msa0036970:CDS |
| GAAGGATTGGGCCCGGCCAA+TGG | 0.492348 | 1_1:+65868998 | Msa0036970:CDS |
| ACGGCCGTGGCGGCGACGGT+TGG | 0.499828 | 1_1:-65868147 | None:intergenic |
| CTCAAGAGACTGTTCGGTAG+CGG | 0.503155 | 1_1:+65868507 | Msa0036970:CDS |
| TCCTCCACCCCTCGCACGAA+CGG | 0.514409 | 1_1:-65868897 | None:intergenic |
| AGGAGTTTCCGTTCGTGCGA+GGG | 0.515075 | 1_1:+65868889 | Msa0036970:CDS |
| ACCACCAACCGTCGCCGCCA+CGG | 0.521167 | 1_1:+65868143 | Msa0036970:CDS |
| GGAAACAGAGTCAACGGCCG+TGG | 0.527447 | 1_1:-65868160 | None:intergenic |
| AATACCTCCGACGCCGGCAC+CGG | 0.530714 | 1_1:-65868343 | None:intergenic |
| GGAAGGCGAAGGATTGGGCC+CGG | 0.531527 | 1_1:+65868991 | Msa0036970:CDS |
| GCAAGAACCAAGCATTGAAA+CGG | 0.533106 | 1_1:+65868011 | Msa0036970:CDS |
| GCTACGATGATCAAAAGCTC+TGG | 0.535567 | 1_1:+65868085 | Msa0036970:CDS |
| GGTTGTTGAGAATCAACATC+AGG | 0.536613 | 1_1:-65868123 | None:intergenic |
| TTCCATTGCCTGTTCCCTGA+CGG | 0.537005 | 1_1:-65868464 | None:intergenic |
| CCCCGCCGTCGCAGATTCGA+CGG | 0.537842 | 1_1:-65868541 | None:intergenic |
| GAGATGGAAGGCGAAGGATT+GGG | 0.539639 | 1_1:+65868986 | Msa0036970:CDS |
| TCACTTGAAATACGAGCCAT+TGG | 0.542079 | 1_1:-65869014 | None:intergenic |
| ACCATCAACCGCCACACACT+TGG | 0.543430 | 1_1:-65868808 | None:intergenic |
| CGTGAAAATACCTCCGACGC+CGG | 0.544652 | 1_1:-65868349 | None:intergenic |
| GACGGCGGGGATGGAGAAAA+CGG | 0.553646 | 1_1:+65868554 | Msa0036970:CDS |
| GCAGCCGGTGCCGGCGTCGG+AGG | 0.554285 | 1_1:+65868339 | Msa0036970:CDS |
| CACGTGTGTAATCGCCGCAC+CGG | 0.555745 | 1_1:-65868853 | None:intergenic |
| GTTTCCGTTCGTGCGAGGGG+TGG | 0.558566 | 1_1:+65868893 | Msa0036970:CDS |
| TTGAATTGATAAAAGTTAAG+GGG | 0.561149 | 1_1:+65869352 | Msa0036970:CDS |
| TGAAATACGAGCCATTGGCC+GGG | 0.563766 | 1_1:-65869009 | None:intergenic |
| CAGGCAATGGAAGCTCCGGC+GGG | 0.564349 | 1_1:+65868475 | Msa0036970:CDS |
| CAGGAGTTTCCGTTCGTGCG+AGG | 0.565614 | 1_1:+65868888 | Msa0036970:CDS |
| GGAGTTTCCGTTCGTGCGAG+GGG | 0.566638 | 1_1:+65868890 | Msa0036970:CDS |
| AGAGCAACTTCGGCTGAACC+GGG | 0.567221 | 1_1:+65868744 | Msa0036970:CDS |
| ATGCCCAAACGCCATAGCAA+CGG | 0.571854 | 1_1:-65869063 | None:intergenic |
| TGTGTAATCGCCGCACCGGT+AGG | 0.577539 | 1_1:-65868849 | None:intergenic |
| GGAGGTGTGTAGAGCAACTT+CGG | 0.577605 | 1_1:+65868734 | Msa0036970:CDS |
| ATTATGATCGTGTTACGAGA+TGG | 0.583294 | 1_1:+65868970 | Msa0036970:CDS |
| TGGAACCGGTCAGTTGTTGG+AGG | 0.586781 | 1_1:+65868938 | Msa0036970:CDS |
| ATACTCGCAATCGACGGAGG+AGG | 0.593613 | 1_1:+65868213 | Msa0036970:CDS |
| CACGGACATAATTAGTACTC+CGG | 0.593724 | 1_1:-65869088 | None:intergenic |
| ACGTGCGGATGCTTTAGAAA+CGG | 0.601408 | 1_1:+65868689 | Msa0036970:CDS |
| TACTTGAACCGGTTCAAATG+CGG | 0.602507 | 1_1:+65868769 | Msa0036970:CDS |
| GTTGACCTCCAACAACTGAC+CGG | 0.609502 | 1_1:-65868943 | None:intergenic |
| CTTGAGAAATCCTCTCCCGC+CGG | 0.609642 | 1_1:-65868490 | None:intergenic |
| CTGATCAACAAGGTCAGCGG+AGG | 0.610850 | 1_1:-65869039 | None:intergenic |
| TTGGCCATGAATAATCCTAC+CGG | 0.612580 | 1_1:+65868834 | Msa0036970:CDS |
| TGAACCGGTTCAAGTAAACC+CGG | 0.613116 | 1_1:-65868762 | None:intergenic |
| AAGAGACTGTTCGGTAGCGG+AGG | 0.614347 | 1_1:+65868510 | Msa0036970:CDS |
| AACAGAGTCAACGGCCGTGG+CGG | 0.614880 | 1_1:-65868157 | None:intergenic |
| GAGTTCCGTCGAATCTGCGA+CGG | 0.615964 | 1_1:+65868536 | Msa0036970:CDS |
| ATATGTATACTCGCAATCGA+CGG | 0.616372 | 1_1:+65868207 | Msa0036970:CDS |
| GACGGCGGAAACAGAGTCAA+CGG | 0.623711 | 1_1:-65868166 | None:intergenic |
| AAGTGTGTGGCGGTTGATGG+TGG | 0.623727 | 1_1:+65868810 | Msa0036970:CDS |
| TGTATACTCGCAATCGACGG+AGG | 0.625011 | 1_1:+65868210 | Msa0036970:CDS |
| GGGAAGAAATTCTACCGTCA+GGG | 0.626899 | 1_1:+65868450 | Msa0036970:CDS |
| GTGCTATGATTTATCCAGTA+CGG | 0.631624 | 1_1:+65868650 | Msa0036970:CDS |
| GGTATGCGAGGCATTCTCGC+CGG | 0.639751 | 1_1:+65868234 | Msa0036970:CDS |
| TGATCGTGTTACGAGATGGA+AGG | 0.645672 | 1_1:+65868974 | Msa0036970:CDS |
| ATCGACGGAGGAGGTATGCG+AGG | 0.653166 | 1_1:+65868222 | Msa0036970:CDS |
| GGCCTGATCAACAAGGTCAG+CGG | 0.653320 | 1_1:-65869042 | None:intergenic |
| TAGCAACGGCCTGATCAACA+AGG | 0.664417 | 1_1:-65869049 | None:intergenic |
| CCGTCGAATCTGCGACGGCG+GGG | 0.668981 | 1_1:+65868541 | Msa0036970:CDS |
| CCCACGTTGATTCTTGACGG+CGG | 0.670164 | 1_1:-65868181 | None:intergenic |
| TGTTACGAGATGGAAGGCGA+AGG | 0.671448 | 1_1:+65868980 | Msa0036970:CDS |
| TGTTTGCTACAAAAGATCAA+CGG | 0.678892 | 1_1:+65868379 | Msa0036970:CDS |
| TGGTGTAACCAAGTGTGTGG+CGG | 0.702857 | 1_1:+65868800 | Msa0036970:CDS |
| TGATGGTGTAACCAAGTGTG+TGG | 0.703336 | 1_1:+65868797 | Msa0036970:CDS |
| CATGAATAATCCTACCGGTG+CGG | 0.712541 | 1_1:+65868839 | Msa0036970:CDS |
| GTACTGGATAAATCATAGCA+CGG | 0.718842 | 1_1:-65868648 | None:intergenic |
| CCGCCGTCAAGAATCAACGT+GGG | 0.730624 | 1_1:+65868181 | Msa0036970:CDS |
| TCTCGGCGGATGACACGTGG+CGG | 0.736625 | 1_1:+65868412 | Msa0036970:CDS |
| TCCGCCGTCAAGAATCAACG+TGG | 0.746396 | 1_1:+65868180 | Msa0036970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAATTTACAATATTGTT+TGG | + | chr1_1:65869143-65869162 | Msa0036970:intron | 15.0% |
| !! | TTTAGTATAGTTACAATATT+TGG | + | chr1_1:65869292-65869311 | Msa0036970:intron | 15.0% |
| !! | ATTCAATTTACAATATTGTT+TGG | + | chr1_1:65869143-65869162 | Msa0036970:intron | 15.0% |
| !! | TTTAGTATAGTTACAATATT+TGG | + | chr1_1:65869292-65869311 | Msa0036970:intron | 15.0% |
| !!! | ATAGTTTTGATTTTCGTTTA+TGG | + | chr1_1:65868712-65868731 | Msa0036970:CDS | 20.0% |
| !!! | TAGTTTTGATTTTCGTTTAT+GGG | + | chr1_1:65868713-65868732 | Msa0036970:CDS | 20.0% |
| !! | TGTTGAATTGATAAAAGTTA+AGG | + | chr1_1:65869350-65869369 | Msa0036970:CDS | 20.0% |
| !! | GTTGAATTGATAAAAGTTAA+GGG | + | chr1_1:65869351-65869370 | Msa0036970:CDS | 20.0% |
| !! | TTGAATTGATAAAAGTTAAG+GGG | + | chr1_1:65869352-65869371 | Msa0036970:CDS | 20.0% |
| !!! | ATAGTTTTGATTTTCGTTTA+TGG | + | chr1_1:65868712-65868731 | Msa0036970:CDS | 20.0% |
| !!! | TAGTTTTGATTTTCGTTTAT+GGG | + | chr1_1:65868713-65868732 | Msa0036970:CDS | 20.0% |
| !! | TGTTGAATTGATAAAAGTTA+AGG | + | chr1_1:65869350-65869369 | Msa0036970:CDS | 20.0% |
| !! | GTTGAATTGATAAAAGTTAA+GGG | + | chr1_1:65869351-65869370 | Msa0036970:CDS | 20.0% |
| !! | TTGAATTGATAAAAGTTAAG+GGG | + | chr1_1:65869352-65869371 | Msa0036970:CDS | 20.0% |
| !!! | ATTTTTTTAACTCCGTACTA+GGG | - | chr1_1:65869214-65869233 | None:intergenic | 25.0% |
| !!! | TATTTTTTTAACTCCGTACT+AGG | - | chr1_1:65869215-65869234 | None:intergenic | 25.0% |
| ! | AGTACGGAGTTAAAAAAATA+AGG | + | chr1_1:65869215-65869234 | Msa0036970:intron | 25.0% |
| ! | GTACGGAGTTAAAAAAATAA+GGG | + | chr1_1:65869216-65869235 | Msa0036970:intron | 25.0% |
| !!! | ATTTTTTTAACTCCGTACTA+GGG | - | chr1_1:65869214-65869233 | None:intergenic | 25.0% |
| !!! | TATTTTTTTAACTCCGTACT+AGG | - | chr1_1:65869215-65869234 | None:intergenic | 25.0% |
| ! | AGTACGGAGTTAAAAAAATA+AGG | + | chr1_1:65869215-65869234 | Msa0036970:intron | 25.0% |
| ! | GTACGGAGTTAAAAAAATAA+GGG | + | chr1_1:65869216-65869235 | Msa0036970:intron | 25.0% |
| AATGCGTTGAAGAAAAAATC+CGG | + | chr1_1:65868279-65868298 | Msa0036970:CDS | 30.0% | |
| ! | TGTTTGCTACAAAAGATCAA+CGG | + | chr1_1:65868379-65868398 | Msa0036970:CDS | 30.0% |
| !!! | TTTTGATTTTCGTTTATGGG+AGG | + | chr1_1:65868716-65868735 | Msa0036970:CDS | 30.0% |
| AGAATAATGAGGTGAAAAAC+AGG | + | chr1_1:65869324-65869343 | Msa0036970:intron | 30.0% | |
| AATGCGTTGAAGAAAAAATC+CGG | + | chr1_1:65868279-65868298 | Msa0036970:CDS | 30.0% | |
| ! | TGTTTGCTACAAAAGATCAA+CGG | + | chr1_1:65868379-65868398 | Msa0036970:CDS | 30.0% |
| !!! | TTTTGATTTTCGTTTATGGG+AGG | + | chr1_1:65868716-65868735 | Msa0036970:CDS | 30.0% |
| AGAATAATGAGGTGAAAAAC+AGG | + | chr1_1:65869324-65869343 | Msa0036970:intron | 30.0% | |
| CTTGAAAGCAAGTTTCTCTT+TGG | + | chr1_1:65868063-65868082 | Msa0036970:CDS | 35.0% | |
| ATATGTATACTCGCAATCGA+CGG | + | chr1_1:65868207-65868226 | Msa0036970:CDS | 35.0% | |
| ! | AAGATAAGCGAGTGTTTTTC+CGG | - | chr1_1:65868256-65868275 | None:intergenic | 35.0% |
| ! | AACGGTGAAAGAAGCTTTTA+CGG | + | chr1_1:65868572-65868591 | Msa0036970:CDS | 35.0% |
| !! | GCTGAAAGACACTTTAAAAC+CGG | + | chr1_1:65868617-65868636 | Msa0036970:CDS | 35.0% |
| GTACTGGATAAATCATAGCA+CGG | - | chr1_1:65868651-65868670 | None:intergenic | 35.0% | |
| GTGCTATGATTTATCCAGTA+CGG | + | chr1_1:65868650-65868669 | Msa0036970:CDS | 35.0% | |
| ACACGTGCTTCATAATAAAC+AGG | + | chr1_1:65868869-65868888 | Msa0036970:CDS | 35.0% | |
| ATTATGATCGTGTTACGAGA+TGG | + | chr1_1:65868970-65868989 | Msa0036970:CDS | 35.0% | |
| TACTAATTATGTCCGTGTTC+AGG | + | chr1_1:65869094-65869113 | Msa0036970:intron | 35.0% | |
| TCAAAGAACATACCTGAACA+CGG | - | chr1_1:65869109-65869128 | None:intergenic | 35.0% | |
| TTGGTTATAGCGCAAATGAT+TGG | + | chr1_1:65869162-65869181 | Msa0036970:intron | 35.0% | |
| GGTTGAGTTTGAGAATAATG+AGG | + | chr1_1:65869313-65869332 | Msa0036970:intron | 35.0% | |
| CTTGAAAGCAAGTTTCTCTT+TGG | + | chr1_1:65868063-65868082 | Msa0036970:CDS | 35.0% | |
| ATATGTATACTCGCAATCGA+CGG | + | chr1_1:65868207-65868226 | Msa0036970:CDS | 35.0% | |
| ! | AAGATAAGCGAGTGTTTTTC+CGG | - | chr1_1:65868256-65868275 | None:intergenic | 35.0% |
| ! | AACGGTGAAAGAAGCTTTTA+CGG | + | chr1_1:65868572-65868591 | Msa0036970:CDS | 35.0% |
| !! | GCTGAAAGACACTTTAAAAC+CGG | + | chr1_1:65868617-65868636 | Msa0036970:CDS | 35.0% |
| GTACTGGATAAATCATAGCA+CGG | - | chr1_1:65868651-65868670 | None:intergenic | 35.0% | |
| GTGCTATGATTTATCCAGTA+CGG | + | chr1_1:65868650-65868669 | Msa0036970:CDS | 35.0% | |
| ACACGTGCTTCATAATAAAC+AGG | + | chr1_1:65868869-65868888 | Msa0036970:CDS | 35.0% | |
| ATTATGATCGTGTTACGAGA+TGG | + | chr1_1:65868970-65868989 | Msa0036970:CDS | 35.0% | |
| TACTAATTATGTCCGTGTTC+AGG | + | chr1_1:65869094-65869113 | Msa0036970:intron | 35.0% | |
| TCAAAGAACATACCTGAACA+CGG | - | chr1_1:65869109-65869128 | None:intergenic | 35.0% | |
| TTGGTTATAGCGCAAATGAT+TGG | + | chr1_1:65869162-65869181 | Msa0036970:intron | 35.0% | |
| GGTTGAGTTTGAGAATAATG+AGG | + | chr1_1:65869313-65869332 | Msa0036970:intron | 35.0% | |
| !! | GCAAGAACCAAGCATTGAAA+CGG | + | chr1_1:65868011-65868030 | Msa0036970:CDS | 40.0% |
| AGCTTATCCGTTTCAATGCT+TGG | - | chr1_1:65868021-65868040 | None:intergenic | 40.0% | |
| CAACATCAGGTATCTGCTTA+GGG | - | chr1_1:65868113-65868132 | None:intergenic | 40.0% | |
| TCAACATCAGGTATCTGCTT+AGG | - | chr1_1:65868114-65868133 | None:intergenic | 40.0% | |
| GGTTGTTGAGAATCAACATC+AGG | - | chr1_1:65868126-65868145 | None:intergenic | 40.0% | |
| !!! | AATCGCCGATTATTTTGACG+TGG | + | chr1_1:65868317-65868336 | Msa0036970:CDS | 40.0% |
| !! | TCAACGGAAACCGATTTTCT+CGG | + | chr1_1:65868395-65868414 | Msa0036970:CDS | 40.0% |
| GGATTTCTCAAGAGACTGTT+CGG | + | chr1_1:65868501-65868520 | Msa0036970:CDS | 40.0% | |
| TCATAGCACGGTATCAAAAC+CGG | - | chr1_1:65868639-65868658 | None:intergenic | 40.0% | |
| ! | TACTTGAACCGGTTCAAATG+CGG | + | chr1_1:65868769-65868788 | Msa0036970:CDS | 40.0% |
| TCAATAGACCGCATTTGAAC+CGG | - | chr1_1:65868780-65868799 | None:intergenic | 40.0% | |
| GTTCAAATGCGGTCTATTGA+TGG | + | chr1_1:65868780-65868799 | Msa0036970:CDS | 40.0% | |
| TTGGCCATGAATAATCCTAC+CGG | + | chr1_1:65868834-65868853 | Msa0036970:CDS | 40.0% | |
| TCACTTGAAATACGAGCCAT+TGG | - | chr1_1:65869017-65869036 | None:intergenic | 40.0% | |
| CACGGACATAATTAGTACTC+CGG | - | chr1_1:65869091-65869110 | None:intergenic | 40.0% | |
| ATGTTAAGCGTGTTGAGAGA+TGG | + | chr1_1:65869264-65869283 | Msa0036970:intron | 40.0% | |
| !! | GCAAGAACCAAGCATTGAAA+CGG | + | chr1_1:65868011-65868030 | Msa0036970:CDS | 40.0% |
| AGCTTATCCGTTTCAATGCT+TGG | - | chr1_1:65868021-65868040 | None:intergenic | 40.0% | |
| CAACATCAGGTATCTGCTTA+GGG | - | chr1_1:65868113-65868132 | None:intergenic | 40.0% | |
| TCAACATCAGGTATCTGCTT+AGG | - | chr1_1:65868114-65868133 | None:intergenic | 40.0% | |
| GGTTGTTGAGAATCAACATC+AGG | - | chr1_1:65868126-65868145 | None:intergenic | 40.0% | |
| !!! | AATCGCCGATTATTTTGACG+TGG | + | chr1_1:65868317-65868336 | Msa0036970:CDS | 40.0% |
| !! | TCAACGGAAACCGATTTTCT+CGG | + | chr1_1:65868395-65868414 | Msa0036970:CDS | 40.0% |
| GGATTTCTCAAGAGACTGTT+CGG | + | chr1_1:65868501-65868520 | Msa0036970:CDS | 40.0% | |
| TCATAGCACGGTATCAAAAC+CGG | - | chr1_1:65868639-65868658 | None:intergenic | 40.0% | |
| ! | TACTTGAACCGGTTCAAATG+CGG | + | chr1_1:65868769-65868788 | Msa0036970:CDS | 40.0% |
| TCAATAGACCGCATTTGAAC+CGG | - | chr1_1:65868780-65868799 | None:intergenic | 40.0% | |
| GTTCAAATGCGGTCTATTGA+TGG | + | chr1_1:65868780-65868799 | Msa0036970:CDS | 40.0% | |
| TTGGCCATGAATAATCCTAC+CGG | + | chr1_1:65868834-65868853 | Msa0036970:CDS | 40.0% | |
| TCACTTGAAATACGAGCCAT+TGG | - | chr1_1:65869017-65869036 | None:intergenic | 40.0% | |
| CACGGACATAATTAGTACTC+CGG | - | chr1_1:65869091-65869110 | None:intergenic | 40.0% | |
| ATGTTAAGCGTGTTGAGAGA+TGG | + | chr1_1:65869264-65869283 | Msa0036970:intron | 40.0% | |
| GCTACGATGATCAAAAGCTC+TGG | + | chr1_1:65868085-65868104 | Msa0036970:CDS | 45.0% | |
| !! | CTTCCCACGTTGATTCTTGA+CGG | - | chr1_1:65868187-65868206 | None:intergenic | 45.0% |
| ! | GATTTTCGCGTTCTGATCAC+CGG | - | chr1_1:65868301-65868320 | None:intergenic | 45.0% |
| GGCTGCCACGTCAAAATAAT+CGG | - | chr1_1:65868325-65868344 | None:intergenic | 45.0% | |
| !!! | GATTATTTTGACGTGGCAGC+CGG | + | chr1_1:65868324-65868343 | Msa0036970:CDS | 45.0% |
| GGGAAGAAATTCTACCGTCA+GGG | + | chr1_1:65868450-65868469 | Msa0036970:CDS | 45.0% | |
| AAATTCTACCGTCAGGGAAC+AGG | + | chr1_1:65868456-65868475 | Msa0036970:CDS | 45.0% | |
| ! | GGTGAAAGAAGCTTTTACGG+CGG | + | chr1_1:65868575-65868594 | Msa0036970:CDS | 45.0% |
| TCCGCACGTGAGAACAAAAA+CGG | - | chr1_1:65868678-65868697 | None:intergenic | 45.0% | |
| !! | ACGTGCGGATGCTTTAGAAA+CGG | + | chr1_1:65868689-65868708 | Msa0036970:CDS | 45.0% |
| TGAACCGGGTTTACTTGAAC+CGG | + | chr1_1:65868758-65868777 | Msa0036970:CDS | 45.0% | |
| ! | TGAACCGGTTCAAGTAAACC+CGG | - | chr1_1:65868765-65868784 | None:intergenic | 45.0% |
| ! | TGATGGTGTAACCAAGTGTG+TGG | + | chr1_1:65868797-65868816 | Msa0036970:CDS | 45.0% |
| CATGAATAATCCTACCGGTG+CGG | + | chr1_1:65868839-65868858 | Msa0036970:CDS | 45.0% | |
| ! | GATTTGCTCGTTCTTTCGCT+TGG | + | chr1_1:65868918-65868937 | Msa0036970:CDS | 45.0% |
| TGATCGTGTTACGAGATGGA+AGG | + | chr1_1:65868974-65868993 | Msa0036970:CDS | 45.0% | |
| TTGAAATACGAGCCATTGGC+CGG | - | chr1_1:65869013-65869032 | None:intergenic | 45.0% | |
| ! | GAGTGTTGCAAACCCTAGTA+CGG | + | chr1_1:65869199-65869218 | Msa0036970:intron | 45.0% |
| GCTACGATGATCAAAAGCTC+TGG | + | chr1_1:65868085-65868104 | Msa0036970:CDS | 45.0% | |
| !! | CTTCCCACGTTGATTCTTGA+CGG | - | chr1_1:65868187-65868206 | None:intergenic | 45.0% |
| ! | GATTTTCGCGTTCTGATCAC+CGG | - | chr1_1:65868301-65868320 | None:intergenic | 45.0% |
| GGCTGCCACGTCAAAATAAT+CGG | - | chr1_1:65868325-65868344 | None:intergenic | 45.0% | |
| !!! | GATTATTTTGACGTGGCAGC+CGG | + | chr1_1:65868324-65868343 | Msa0036970:CDS | 45.0% |
| GGGAAGAAATTCTACCGTCA+GGG | + | chr1_1:65868450-65868469 | Msa0036970:CDS | 45.0% | |
| AAATTCTACCGTCAGGGAAC+AGG | + | chr1_1:65868456-65868475 | Msa0036970:CDS | 45.0% | |
| ! | GGTGAAAGAAGCTTTTACGG+CGG | + | chr1_1:65868575-65868594 | Msa0036970:CDS | 45.0% |
| TCCGCACGTGAGAACAAAAA+CGG | - | chr1_1:65868678-65868697 | None:intergenic | 45.0% | |
| !! | ACGTGCGGATGCTTTAGAAA+CGG | + | chr1_1:65868689-65868708 | Msa0036970:CDS | 45.0% |
| TGAACCGGGTTTACTTGAAC+CGG | + | chr1_1:65868758-65868777 | Msa0036970:CDS | 45.0% | |
| ! | TGAACCGGTTCAAGTAAACC+CGG | - | chr1_1:65868765-65868784 | None:intergenic | 45.0% |
| ! | TGATGGTGTAACCAAGTGTG+TGG | + | chr1_1:65868797-65868816 | Msa0036970:CDS | 45.0% |
| CATGAATAATCCTACCGGTG+CGG | + | chr1_1:65868839-65868858 | Msa0036970:CDS | 45.0% | |
| ! | GATTTGCTCGTTCTTTCGCT+TGG | + | chr1_1:65868918-65868937 | Msa0036970:CDS | 45.0% |
| TGATCGTGTTACGAGATGGA+AGG | + | chr1_1:65868974-65868993 | Msa0036970:CDS | 45.0% | |
| TTGAAATACGAGCCATTGGC+CGG | - | chr1_1:65869013-65869032 | None:intergenic | 45.0% | |
| ! | GAGTGTTGCAAACCCTAGTA+CGG | + | chr1_1:65869199-65869218 | Msa0036970:intron | 45.0% |
| TGTATACTCGCAATCGACGG+AGG | + | chr1_1:65868210-65868229 | Msa0036970:CDS | 50.0% | |
| !! | ACGGAAACCGATTTTCTCGG+CGG | + | chr1_1:65868398-65868417 | Msa0036970:CDS | 50.0% |
| GTGTCATCCGCCGAGAAAAT+CGG | - | chr1_1:65868408-65868427 | None:intergenic | 50.0% | |
| GGGGAAGAAATTCTACCGTC+AGG | + | chr1_1:65868449-65868468 | Msa0036970:CDS | 50.0% | |
| TTCCATTGCCTGTTCCCTGA+CGG | - | chr1_1:65868467-65868486 | None:intergenic | 50.0% | |
| CTCAAGAGACTGTTCGGTAG+CGG | + | chr1_1:65868507-65868526 | Msa0036970:CDS | 50.0% | |
| ! | GAAGCTTTTACGGCGGAGAA+TGG | + | chr1_1:65868582-65868601 | Msa0036970:CDS | 50.0% |
| !!! | GCCGTTTTTGTTCTCACGTG+CGG | + | chr1_1:65868674-65868693 | Msa0036970:CDS | 50.0% |
| ! | GGAGGTGTGTAGAGCAACTT+CGG | + | chr1_1:65868734-65868753 | Msa0036970:CDS | 50.0% |
| TAGAGCAACTTCGGCTGAAC+CGG | + | chr1_1:65868743-65868762 | Msa0036970:CDS | 50.0% | |
| TGGTGTAACCAAGTGTGTGG+CGG | + | chr1_1:65868800-65868819 | Msa0036970:CDS | 50.0% | |
| ! | CGCACCGGTAGGATTATTCA+TGG | - | chr1_1:65868841-65868860 | None:intergenic | 50.0% |
| CTCGTTCTTTCGCTTGGAAC+CGG | + | chr1_1:65868924-65868943 | Msa0036970:CDS | 50.0% | |
| GTTGACCTCCAACAACTGAC+CGG | - | chr1_1:65868946-65868965 | None:intergenic | 50.0% | |
| TGTTACGAGATGGAAGGCGA+AGG | + | chr1_1:65868980-65868999 | Msa0036970:CDS | 50.0% | |
| GAGATGGAAGGCGAAGGATT+GGG | + | chr1_1:65868986-65869005 | Msa0036970:CDS | 50.0% | |
| TGAAATACGAGCCATTGGCC+GGG | - | chr1_1:65869012-65869031 | None:intergenic | 50.0% | |
| TAGCAACGGCCTGATCAACA+AGG | - | chr1_1:65869052-65869071 | None:intergenic | 50.0% | |
| TGTTGATCAGGCCGTTGCTA+TGG | + | chr1_1:65869052-65869071 | Msa0036970:CDS | 50.0% | |
| ATGCCCAAACGCCATAGCAA+CGG | - | chr1_1:65869066-65869085 | None:intergenic | 50.0% | |
| TGTATACTCGCAATCGACGG+AGG | + | chr1_1:65868210-65868229 | Msa0036970:CDS | 50.0% | |
| !! | ACGGAAACCGATTTTCTCGG+CGG | + | chr1_1:65868398-65868417 | Msa0036970:CDS | 50.0% |
| GTGTCATCCGCCGAGAAAAT+CGG | - | chr1_1:65868408-65868427 | None:intergenic | 50.0% | |
| GGGGAAGAAATTCTACCGTC+AGG | + | chr1_1:65868449-65868468 | Msa0036970:CDS | 50.0% | |
| TTCCATTGCCTGTTCCCTGA+CGG | - | chr1_1:65868467-65868486 | None:intergenic | 50.0% | |
| CTCAAGAGACTGTTCGGTAG+CGG | + | chr1_1:65868507-65868526 | Msa0036970:CDS | 50.0% | |
| ! | GAAGCTTTTACGGCGGAGAA+TGG | + | chr1_1:65868582-65868601 | Msa0036970:CDS | 50.0% |
| !!! | GCCGTTTTTGTTCTCACGTG+CGG | + | chr1_1:65868674-65868693 | Msa0036970:CDS | 50.0% |
| ! | GGAGGTGTGTAGAGCAACTT+CGG | + | chr1_1:65868734-65868753 | Msa0036970:CDS | 50.0% |
| TAGAGCAACTTCGGCTGAAC+CGG | + | chr1_1:65868743-65868762 | Msa0036970:CDS | 50.0% | |
| TGGTGTAACCAAGTGTGTGG+CGG | + | chr1_1:65868800-65868819 | Msa0036970:CDS | 50.0% | |
| ! | CGCACCGGTAGGATTATTCA+TGG | - | chr1_1:65868841-65868860 | None:intergenic | 50.0% |
| CTCGTTCTTTCGCTTGGAAC+CGG | + | chr1_1:65868924-65868943 | Msa0036970:CDS | 50.0% | |
| GTTGACCTCCAACAACTGAC+CGG | - | chr1_1:65868946-65868965 | None:intergenic | 50.0% | |
| TGTTACGAGATGGAAGGCGA+AGG | + | chr1_1:65868980-65868999 | Msa0036970:CDS | 50.0% | |
| GAGATGGAAGGCGAAGGATT+GGG | + | chr1_1:65868986-65869005 | Msa0036970:CDS | 50.0% | |
| TGAAATACGAGCCATTGGCC+GGG | - | chr1_1:65869012-65869031 | None:intergenic | 50.0% | |
| TAGCAACGGCCTGATCAACA+AGG | - | chr1_1:65869052-65869071 | None:intergenic | 50.0% | |
| TGTTGATCAGGCCGTTGCTA+TGG | + | chr1_1:65869052-65869071 | Msa0036970:CDS | 50.0% | |
| ATGCCCAAACGCCATAGCAA+CGG | - | chr1_1:65869066-65869085 | None:intergenic | 50.0% | |
| GACGGCGGAAACAGAGTCAA+CGG | - | chr1_1:65868169-65868188 | None:intergenic | 55.0% | |
| TCCGCCGTCAAGAATCAACG+TGG | + | chr1_1:65868180-65868199 | Msa0036970:CDS | 55.0% | |
| !! | CCCACGTTGATTCTTGACGG+CGG | - | chr1_1:65868184-65868203 | None:intergenic | 55.0% |
| CCGCCGTCAAGAATCAACGT+GGG | + | chr1_1:65868181-65868200 | Msa0036970:CDS | 55.0% | |
| ATACTCGCAATCGACGGAGG+AGG | + | chr1_1:65868213-65868232 | Msa0036970:CDS | 55.0% | |
| CGTGAAAATACCTCCGACGC+CGG | - | chr1_1:65868352-65868371 | None:intergenic | 55.0% | |
| !!! | CGGCGTCGGAGGTATTTTCA+CGG | + | chr1_1:65868350-65868369 | Msa0036970:CDS | 55.0% |
| ! | TTTTCTCGGCGGATGACACG+TGG | + | chr1_1:65868409-65868428 | Msa0036970:CDS | 55.0% |
| ! | GGATGACACGTGGCGGTTTT+TGG | + | chr1_1:65868419-65868438 | Msa0036970:CDS | 55.0% |
| !! | TGACACGTGGCGGTTTTTGG+CGG | + | chr1_1:65868422-65868441 | Msa0036970:CDS | 55.0% |
| !!! | TGGCGGTTTTTGGCGGAACA+GGG | + | chr1_1:65868429-65868448 | Msa0036970:CDS | 55.0% |
| TACCGTCAGGGAACAGGCAA+TGG | + | chr1_1:65868462-65868481 | Msa0036970:CDS | 55.0% | |
| GGAACAGGCAATGGAAGCTC+CGG | + | chr1_1:65868471-65868490 | Msa0036970:CDS | 55.0% | |
| CTTGAGAAATCCTCTCCCGC+CGG | - | chr1_1:65868493-65868512 | None:intergenic | 55.0% | |
| ! | AAGAGACTGTTCGGTAGCGG+AGG | + | chr1_1:65868510-65868529 | Msa0036970:CDS | 55.0% |
| GAGTTCCGTCGAATCTGCGA+CGG | + | chr1_1:65868536-65868555 | Msa0036970:CDS | 55.0% | |
| GAACAAAAACGGCGCCGTAC+TGG | - | chr1_1:65868667-65868686 | None:intergenic | 55.0% | |
| AGAGCAACTTCGGCTGAACC+GGG | + | chr1_1:65868744-65868763 | Msa0036970:CDS | 55.0% | |
| ACCAAGTGTGTGGCGGTTGA+TGG | + | chr1_1:65868807-65868826 | Msa0036970:CDS | 55.0% | |
| ACCATCAACCGCCACACACT+TGG | - | chr1_1:65868811-65868830 | None:intergenic | 55.0% | |
| !! | AAGTGTGTGGCGGTTGATGG+TGG | + | chr1_1:65868810-65868829 | Msa0036970:CDS | 55.0% |
| !! | TGTGGCGGTTGATGGTGGTT+TGG | + | chr1_1:65868815-65868834 | Msa0036970:CDS | 55.0% |
| AGGAGTTTCCGTTCGTGCGA+GGG | + | chr1_1:65868889-65868908 | Msa0036970:CDS | 55.0% | |
| GCTTGGAACCGGTCAGTTGT+TGG | + | chr1_1:65868935-65868954 | Msa0036970:CDS | 55.0% | |
| TGGAACCGGTCAGTTGTTGG+AGG | + | chr1_1:65868938-65868957 | Msa0036970:CDS | 55.0% | |
| CGAGATGGAAGGCGAAGGAT+TGG | + | chr1_1:65868985-65869004 | Msa0036970:CDS | 55.0% | |
| CTGATCAACAAGGTCAGCGG+AGG | - | chr1_1:65869042-65869061 | None:intergenic | 55.0% | |
| CTCCGCTGACCTTGTTGATC+AGG | + | chr1_1:65869040-65869059 | Msa0036970:CDS | 55.0% | |
| GGCCTGATCAACAAGGTCAG+CGG | - | chr1_1:65869045-65869064 | None:intergenic | 55.0% | |
| AGGCCGTTGCTATGGCGTTT+GGG | + | chr1_1:65869060-65869079 | Msa0036970:CDS | 55.0% | |
| ! | CTATGGCGTTTGGGCATTGC+CGG | + | chr1_1:65869069-65869088 | Msa0036970:CDS | 55.0% |
| GACGGCGGAAACAGAGTCAA+CGG | - | chr1_1:65868169-65868188 | None:intergenic | 55.0% | |
| TCCGCCGTCAAGAATCAACG+TGG | + | chr1_1:65868180-65868199 | Msa0036970:CDS | 55.0% | |
| !! | CCCACGTTGATTCTTGACGG+CGG | - | chr1_1:65868184-65868203 | None:intergenic | 55.0% |
| CCGCCGTCAAGAATCAACGT+GGG | + | chr1_1:65868181-65868200 | Msa0036970:CDS | 55.0% | |
| ATACTCGCAATCGACGGAGG+AGG | + | chr1_1:65868213-65868232 | Msa0036970:CDS | 55.0% | |
| CGTGAAAATACCTCCGACGC+CGG | - | chr1_1:65868352-65868371 | None:intergenic | 55.0% | |
| !!! | CGGCGTCGGAGGTATTTTCA+CGG | + | chr1_1:65868350-65868369 | Msa0036970:CDS | 55.0% |
| ! | TTTTCTCGGCGGATGACACG+TGG | + | chr1_1:65868409-65868428 | Msa0036970:CDS | 55.0% |
| ! | GGATGACACGTGGCGGTTTT+TGG | + | chr1_1:65868419-65868438 | Msa0036970:CDS | 55.0% |
| !! | TGACACGTGGCGGTTTTTGG+CGG | + | chr1_1:65868422-65868441 | Msa0036970:CDS | 55.0% |
| !!! | TGGCGGTTTTTGGCGGAACA+GGG | + | chr1_1:65868429-65868448 | Msa0036970:CDS | 55.0% |
| TACCGTCAGGGAACAGGCAA+TGG | + | chr1_1:65868462-65868481 | Msa0036970:CDS | 55.0% | |
| GGAACAGGCAATGGAAGCTC+CGG | + | chr1_1:65868471-65868490 | Msa0036970:CDS | 55.0% | |
| CTTGAGAAATCCTCTCCCGC+CGG | - | chr1_1:65868493-65868512 | None:intergenic | 55.0% | |
| ! | AAGAGACTGTTCGGTAGCGG+AGG | + | chr1_1:65868510-65868529 | Msa0036970:CDS | 55.0% |
| GAGTTCCGTCGAATCTGCGA+CGG | + | chr1_1:65868536-65868555 | Msa0036970:CDS | 55.0% | |
| GAACAAAAACGGCGCCGTAC+TGG | - | chr1_1:65868667-65868686 | None:intergenic | 55.0% | |
| AGAGCAACTTCGGCTGAACC+GGG | + | chr1_1:65868744-65868763 | Msa0036970:CDS | 55.0% | |
| ACCAAGTGTGTGGCGGTTGA+TGG | + | chr1_1:65868807-65868826 | Msa0036970:CDS | 55.0% | |
| ACCATCAACCGCCACACACT+TGG | - | chr1_1:65868811-65868830 | None:intergenic | 55.0% | |
| !! | AAGTGTGTGGCGGTTGATGG+TGG | + | chr1_1:65868810-65868829 | Msa0036970:CDS | 55.0% |
| !! | TGTGGCGGTTGATGGTGGTT+TGG | + | chr1_1:65868815-65868834 | Msa0036970:CDS | 55.0% |
| AGGAGTTTCCGTTCGTGCGA+GGG | + | chr1_1:65868889-65868908 | Msa0036970:CDS | 55.0% | |
| GCTTGGAACCGGTCAGTTGT+TGG | + | chr1_1:65868935-65868954 | Msa0036970:CDS | 55.0% | |
| TGGAACCGGTCAGTTGTTGG+AGG | + | chr1_1:65868938-65868957 | Msa0036970:CDS | 55.0% | |
| CGAGATGGAAGGCGAAGGAT+TGG | + | chr1_1:65868985-65869004 | Msa0036970:CDS | 55.0% | |
| CTGATCAACAAGGTCAGCGG+AGG | - | chr1_1:65869042-65869061 | None:intergenic | 55.0% | |
| CTCCGCTGACCTTGTTGATC+AGG | + | chr1_1:65869040-65869059 | Msa0036970:CDS | 55.0% | |
| GGCCTGATCAACAAGGTCAG+CGG | - | chr1_1:65869045-65869064 | None:intergenic | 55.0% | |
| AGGCCGTTGCTATGGCGTTT+GGG | + | chr1_1:65869060-65869079 | Msa0036970:CDS | 55.0% | |
| ! | CTATGGCGTTTGGGCATTGC+CGG | + | chr1_1:65869069-65869088 | Msa0036970:CDS | 55.0% |
| AACAGAGTCAACGGCCGTGG+CGG | - | chr1_1:65868160-65868179 | None:intergenic | 60.0% | |
| GGAAACAGAGTCAACGGCCG+TGG | - | chr1_1:65868163-65868182 | None:intergenic | 60.0% | |
| ! | ATCGACGGAGGAGGTATGCG+AGG | + | chr1_1:65868222-65868241 | Msa0036970:CDS | 60.0% |
| ! | GGTATGCGAGGCATTCTCGC+CGG | + | chr1_1:65868234-65868253 | Msa0036970:CDS | 60.0% |
| !!! | GTGGCGGTTTTTGGCGGAAC+AGG | + | chr1_1:65868428-65868447 | Msa0036970:CDS | 60.0% |
| !!! | GGCGGTTTTTGGCGGAACAG+GGG | + | chr1_1:65868430-65868449 | Msa0036970:CDS | 60.0% |
| ACAGGCAATGGAAGCTCCGG+CGG | + | chr1_1:65868474-65868493 | Msa0036970:CDS | 60.0% | |
| TTCCGTCGAATCTGCGACGG+CGG | + | chr1_1:65868539-65868558 | Msa0036970:CDS | 60.0% | |
| GACGGCGGGGATGGAGAAAA+CGG | + | chr1_1:65868554-65868573 | Msa0036970:CDS | 60.0% | |
| ! | TGTGTAATCGCCGCACCGGT+AGG | - | chr1_1:65868852-65868871 | None:intergenic | 60.0% |
| CACGTGTGTAATCGCCGCAC+CGG | - | chr1_1:65868856-65868875 | None:intergenic | 60.0% | |
| CAGGAGTTTCCGTTCGTGCG+AGG | + | chr1_1:65868888-65868907 | Msa0036970:CDS | 60.0% | |
| GGAGTTTCCGTTCGTGCGAG+GGG | + | chr1_1:65868890-65868909 | Msa0036970:CDS | 60.0% | |
| CAGGCCGTTGCTATGGCGTT+TGG | + | chr1_1:65869059-65869078 | Msa0036970:CDS | 60.0% | |
| AACAGAGTCAACGGCCGTGG+CGG | - | chr1_1:65868160-65868179 | None:intergenic | 60.0% | |
| GGAAACAGAGTCAACGGCCG+TGG | - | chr1_1:65868163-65868182 | None:intergenic | 60.0% | |
| ! | ATCGACGGAGGAGGTATGCG+AGG | + | chr1_1:65868222-65868241 | Msa0036970:CDS | 60.0% |
| ! | GGTATGCGAGGCATTCTCGC+CGG | + | chr1_1:65868234-65868253 | Msa0036970:CDS | 60.0% |
| !!! | GTGGCGGTTTTTGGCGGAAC+AGG | + | chr1_1:65868428-65868447 | Msa0036970:CDS | 60.0% |
| !!! | GGCGGTTTTTGGCGGAACAG+GGG | + | chr1_1:65868430-65868449 | Msa0036970:CDS | 60.0% |
| ACAGGCAATGGAAGCTCCGG+CGG | + | chr1_1:65868474-65868493 | Msa0036970:CDS | 60.0% | |
| TTCCGTCGAATCTGCGACGG+CGG | + | chr1_1:65868539-65868558 | Msa0036970:CDS | 60.0% | |
| GACGGCGGGGATGGAGAAAA+CGG | + | chr1_1:65868554-65868573 | Msa0036970:CDS | 60.0% | |
| ! | TGTGTAATCGCCGCACCGGT+AGG | - | chr1_1:65868852-65868871 | None:intergenic | 60.0% |
| CACGTGTGTAATCGCCGCAC+CGG | - | chr1_1:65868856-65868875 | None:intergenic | 60.0% | |
| CAGGAGTTTCCGTTCGTGCG+AGG | + | chr1_1:65868888-65868907 | Msa0036970:CDS | 60.0% | |
| GGAGTTTCCGTTCGTGCGAG+GGG | + | chr1_1:65868890-65868909 | Msa0036970:CDS | 60.0% | |
| CAGGCCGTTGCTATGGCGTT+TGG | + | chr1_1:65869059-65869078 | Msa0036970:CDS | 60.0% | |
| TTTGACGTGGCAGCCGGTGC+CGG | + | chr1_1:65868330-65868349 | Msa0036970:CDS | 65.0% | |
| AATACCTCCGACGCCGGCAC+CGG | - | chr1_1:65868346-65868365 | None:intergenic | 65.0% | |
| TCTCGGCGGATGACACGTGG+CGG | + | chr1_1:65868412-65868431 | Msa0036970:CDS | 65.0% | |
| CAGGCAATGGAAGCTCCGGC+GGG | + | chr1_1:65868475-65868494 | Msa0036970:CDS | 65.0% | |
| AATGGAAGCTCCGGCGGGAG+AGG | + | chr1_1:65868480-65868499 | Msa0036970:CDS | 65.0% | |
| TCCGTCGAATCTGCGACGGC+GGG | + | chr1_1:65868540-65868559 | Msa0036970:CDS | 65.0% | |
| GTTTCCGTTCGTGCGAGGGG+TGG | + | chr1_1:65868893-65868912 | Msa0036970:CDS | 65.0% | |
| TCCTCCACCCCTCGCACGAA+CGG | - | chr1_1:65868900-65868919 | None:intergenic | 65.0% | |
| GGAAGGCGAAGGATTGGGCC+CGG | + | chr1_1:65868991-65869010 | Msa0036970:CDS | 65.0% | |
| GAAGGATTGGGCCCGGCCAA+TGG | + | chr1_1:65868998-65869017 | Msa0036970:CDS | 65.0% | |
| TTTGACGTGGCAGCCGGTGC+CGG | + | chr1_1:65868330-65868349 | Msa0036970:CDS | 65.0% | |
| AATACCTCCGACGCCGGCAC+CGG | - | chr1_1:65868346-65868365 | None:intergenic | 65.0% | |
| TCTCGGCGGATGACACGTGG+CGG | + | chr1_1:65868412-65868431 | Msa0036970:CDS | 65.0% | |
| CAGGCAATGGAAGCTCCGGC+GGG | + | chr1_1:65868475-65868494 | Msa0036970:CDS | 65.0% | |
| AATGGAAGCTCCGGCGGGAG+AGG | + | chr1_1:65868480-65868499 | Msa0036970:CDS | 65.0% | |
| TCCGTCGAATCTGCGACGGC+GGG | + | chr1_1:65868540-65868559 | Msa0036970:CDS | 65.0% | |
| GTTTCCGTTCGTGCGAGGGG+TGG | + | chr1_1:65868893-65868912 | Msa0036970:CDS | 65.0% | |
| TCCTCCACCCCTCGCACGAA+CGG | - | chr1_1:65868900-65868919 | None:intergenic | 65.0% | |
| GGAAGGCGAAGGATTGGGCC+CGG | + | chr1_1:65868991-65869010 | Msa0036970:CDS | 65.0% | |
| GAAGGATTGGGCCCGGCCAA+TGG | + | chr1_1:65868998-65869017 | Msa0036970:CDS | 65.0% | |
| ACCACCAACCGTCGCCGCCA+CGG | + | chr1_1:65868143-65868162 | Msa0036970:CDS | 70.0% | |
| CCCCGCCGTCGCAGATTCGA+CGG | - | chr1_1:65868544-65868563 | None:intergenic | 70.0% | |
| CCGTCGAATCTGCGACGGCG+GGG | + | chr1_1:65868541-65868560 | Msa0036970:CDS | 70.0% | |
| CGAATCTGCGACGGCGGGGA+TGG | + | chr1_1:65868545-65868564 | Msa0036970:CDS | 70.0% | |
| TCCGTTCGTGCGAGGGGTGG+AGG | + | chr1_1:65868896-65868915 | Msa0036970:CDS | 70.0% | |
| ACCACCAACCGTCGCCGCCA+CGG | + | chr1_1:65868143-65868162 | Msa0036970:CDS | 70.0% | |
| CCCCGCCGTCGCAGATTCGA+CGG | - | chr1_1:65868544-65868563 | None:intergenic | 70.0% | |
| CCGTCGAATCTGCGACGGCG+GGG | + | chr1_1:65868541-65868560 | Msa0036970:CDS | 70.0% | |
| CGAATCTGCGACGGCGGGGA+TGG | + | chr1_1:65868545-65868564 | Msa0036970:CDS | 70.0% | |
| TCCGTTCGTGCGAGGGGTGG+AGG | + | chr1_1:65868896-65868915 | Msa0036970:CDS | 70.0% | |
| GTCAACGGCCGTGGCGGCGA+CGG | - | chr1_1:65868154-65868173 | None:intergenic | 75.0% | |
| GTCAACGGCCGTGGCGGCGA+CGG | - | chr1_1:65868154-65868173 | None:intergenic | 75.0% | |
| ! | GCCGTGGCGGCGACGGTTGG+TGG | - | chr1_1:65868147-65868166 | None:intergenic | 80.0% |
| ! | ACGGCCGTGGCGGCGACGGT+TGG | - | chr1_1:65868150-65868169 | None:intergenic | 80.0% |
| !!! | GTGGCAGCCGGTGCCGGCGT+CGG | + | chr1_1:65868336-65868355 | Msa0036970:CDS | 80.0% |
| ! | GCCGTGGCGGCGACGGTTGG+TGG | - | chr1_1:65868147-65868166 | None:intergenic | 80.0% |
| ! | ACGGCCGTGGCGGCGACGGT+TGG | - | chr1_1:65868150-65868169 | None:intergenic | 80.0% |
| !!! | GTGGCAGCCGGTGCCGGCGT+CGG | + | chr1_1:65868336-65868355 | Msa0036970:CDS | 80.0% |
| !!! | GCAGCCGGTGCCGGCGTCGG+AGG | + | chr1_1:65868339-65868358 | Msa0036970:CDS | 85.0% |
| !!! | GCAGCCGGTGCCGGCGTCGG+AGG | + | chr1_1:65868339-65868358 | Msa0036970:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 65868009 | 65869380 | 65868009 | ID=Msa0036970;Name=Msa0036970 |
| chr1_1 | mRNA | 65868009 | 65869380 | 65868009 | ID=Msa0036970-mRNA-1;Parent=Msa0036970;Name=Msa0036970-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|0.5|0|0|2|0|377 |
| chr1_1 | exon | 65868009 | 65869107 | 65868009 | ID=Msa0036970-mRNA-1:exon:21229;Parent=Msa0036970-mRNA-1 |
| chr1_1 | exon | 65869346 | 65869380 | 65869346 | ID=Msa0036970-mRNA-1:exon:21230;Parent=Msa0036970-mRNA-1 |
| chr1_1 | CDS | 65868009 | 65869107 | 65868009 | ID=Msa0036970-mRNA-1:cds;Parent=Msa0036970-mRNA-1 |
| chr1_1 | CDS | 65869346 | 65869380 | 65869346 | ID=Msa0036970-mRNA-1:cds;Parent=Msa0036970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
