AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342230 MtrunA17_Chr1g0199801 93.648 488 6 2 1 488 1 463 0.0 927
Msa1342230 MtrunA17_Chr2g0292051 43.515 478 190 12 11 487 21 419 7.19e-121 361
Msa1342230 MtrunA17_Chr1g0185551 38.325 394 174 8 74 464 29 356 5.63e-82 259
Msa1342230 MtrunA17_Chr7g0259871 36.893 412 193 9 74 479 29 379 5.40e-80 253
Msa1342230 MtrunA17_Chr1g0153781 27.083 432 252 15 75 483 21 412 3.13e-35 136
Msa1342230 MtrunA17_Chr5g0402441 31.045 335 189 12 75 388 16 329 3.86e-34 132
Msa1342230 MtrunA17_Chr5g0402451 30.931 333 195 10 75 388 10 326 1.55e-33 130
Msa1342230 MtrunA17_Chr3g0133691 29.032 403 221 16 94 473 39 399 2.09e-32 128
Msa1342230 MtrunA17_Chr3g0133681 27.889 398 226 14 94 470 39 396 5.00e-32 127
Msa1342230 MtrunA17_Chr8g0335581 26.098 410 245 10 75 470 21 386 5.62e-28 115
Msa1342230 MtrunA17_Chr8g0335611 28.710 411 233 14 75 470 32 397 5.31e-27 112
Msa1342230 MtrunA17_Chr8g0335621 28.193 415 230 15 75 470 63 428 1.49e-26 112
Msa1342230 MtrunA17_Chr8g0335591 26.269 453 263 16 31 473 7 398 2.34e-25 108
Msa1342230 MtrunA17_Chr8g0335651 29.484 407 220 17 75 470 33 383 7.90e-24 103
Msa1342230 MtrunA17_Chr8g0335631 30.061 326 175 11 75 378 32 326 1.45e-20 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342230 AT2G39220.1 65.833 480 125 6 8 483 37 481 0.0 629
Msa1342230 AT3G54950.1 65.762 479 109 6 8 486 48 471 0.0 624
Msa1342230 AT4G29800.2 60.870 483 150 5 17 486 53 509 0.0 562
Msa1342230 AT4G29800.1 60.663 483 150 5 17 486 53 508 0.0 559
Msa1342230 AT3G63200.1 39.898 391 176 6 74 464 29 360 8.63e-86 269
Msa1342230 AT4G37060.1 31.447 318 189 9 75 376 19 323 1.38e-36 140
Msa1342230 AT4G37070.2 27.381 420 244 14 75 473 19 398 1.03e-34 135
Msa1342230 AT4G37070.3 30.189 318 193 9 75 376 19 323 1.50e-34 134
Msa1342230 AT4G37070.1 30.189 318 193 9 75 376 19 323 1.50e-34 134
Msa1342230 AT2G26560.1 29.496 417 238 14 75 473 19 397 7.07e-34 132
Msa1342230 AT4G37060.2 29.023 348 189 10 75 376 19 354 4.29e-31 125
Msa1342230 AT4G37070.4 28.302 318 188 9 75 376 19 312 1.15e-28 117
Msa1342230 AT5G43590.1 30.218 321 186 8 75 376 14 315 1.42e-25 108
Msa1342230 AT5G43590.2 30.218 321 186 8 75 376 81 382 2.77e-25 108
Msa1342230 AT4G37050.1 29.231 325 195 11 75 376 35 347 9.73e-25 106

Find 189 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGGTTGGGTTTGGGCTTCT+AGG 0.192840 tig0005300:-29707 None:intergenic
GACAAGTGGTGTAATTAAAA+AGG 0.197078 tig0005300:+31574 Msa1342230:three_prime_UTR
TTCTATAGACGGGTTGGGTT+TGG 0.215604 tig0005300:-29716 None:intergenic
AGCTGGATTTGGACTTGTTT+TGG 0.225310 tig0005300:+28941 Msa1342230:CDS
CAGAAGCTTGATTGGCTTGC+TGG 0.233034 tig0005300:+29604 Msa1342230:CDS
TTGGGCTTCTAGGTGGGTTT+TGG 0.233776 tig0005300:-29697 None:intergenic
TTGAAGCAGCTGTTGTAATT+TGG 0.242495 tig0005300:+26825 None:intergenic
TCTATAGACGGGTTGGGTTT+GGG 0.246532 tig0005300:-29715 None:intergenic
CAGGCCGTTGCTATGGCGTT+TGG 0.279175 tig0005300:+28507 Msa1342230:CDS
CTGTTTGGAGGGAAGAAGAT+TGG 0.292097 tig0005300:+29565 Msa1342230:CDS
CTTGAGAGCAAGTTTCTCTT+TGG 0.302392 tig0005300:+27511 Msa1342230:CDS
CTATGGCGTTTGGGCATTGC+CGG 0.308860 tig0005300:+28517 Msa1342230:CDS
AGCTTATCCGTTTCAATGCT+TGG 0.316802 tig0005300:-27466 None:intergenic
GGAGCTAGCTTTGCTACTTT+CGG 0.323930 tig0005300:+26904 Msa1342230:five_prime_UTR
ACAGGCAAGTGGATCAAGTA+TGG 0.331661 tig0005300:+29438 Msa1342230:intron
CATCAGCATCTTTACATTGC+TGG 0.334510 tig0005300:-29497 None:intergenic
GTAACTTTCAGAAGCTTGAT+TGG 0.348924 tig0005300:+29596 Msa1342230:CDS
TAGAGCAACTTCGGCTGAAC+CGG 0.359167 tig0005300:+28191 Msa1342230:CDS
GCTTGCTGGAGAACTTGTTC+AGG 0.361300 tig0005300:+29618 Msa1342230:CDS
TCACAAGAGGACAGACATTA+TGG 0.363412 tig0005300:+31625 Msa1342230:three_prime_UTR
AAATTCAGAGGGTGGTGAAT+TGG 0.367705 tig0005300:+31776 Msa1342230:three_prime_UTR
TAAAATGTTTGCAGGGAATA+TGG 0.368122 tig0005300:+31387 Msa1342230:intron
AGGGTAATAATTCTATTCTA+AGG 0.371139 tig0005300:-27037 None:intergenic
TACTAATTATGTCCGTGTTC+AGG 0.380764 tig0005300:+28542 Msa1342230:CDS
AGCAAGTTGAAGGGTATGTA+TGG 0.382104 tig0005300:+28910 Msa1342230:intron
TTTGAAATATGAAATATATA+AGG 0.383056 tig0005300:-27124 None:intergenic
TGAAGATAGACAAGGGTTAG+AGG 0.383057 tig0005300:+31537 Msa1342230:three_prime_UTR
AGAAAAGCAGAAAATAATAA+TGG 0.385664 tig0005300:+27414 Msa1342230:exon
AGGCCGTTGCTATGGCGTTT+GGG 0.395216 tig0005300:+28508 Msa1342230:CDS
TCAACATCAGGTATCTGCTT+AGG 0.397587 tig0005300:-27559 None:intergenic
CTCCGCTGACCTTGTTGATC+AGG 0.405823 tig0005300:+28488 Msa1342230:CDS
GTTGGGTTTGGGCTTCTAGG+TGG 0.408569 tig0005300:-29704 None:intergenic
CTAGTTCTTTCGCTTGGAAC+CGG 0.412376 tig0005300:+28372 Msa1342230:CDS
AAATTCTACCGTCAGGGAAC+AGG 0.418583 tig0005300:+27904 Msa1342230:CDS
TTTGACGTGGCAGCCGGTGC+CGG 0.419564 tig0005300:+27778 Msa1342230:CDS
GGAGAAGCAAAGAGTGGAGG+AGG 0.422020 tig0005300:-27103 None:intergenic
GCCGTGGCGGCGACGGTTGG+TGG 0.422292 tig0005300:-27592 None:intergenic
ATCAGCATCTTTACATTGCT+GGG 0.425599 tig0005300:-29496 None:intergenic
GCTTGGAACCGGTCAGTTGT+TGG 0.425684 tig0005300:+28383 Msa1342230:CDS
TCCGTTCGTGCGAGGGGTGG+AGG 0.430043 tig0005300:+28344 Msa1342230:CDS
TGGGGTGAGATAGCTGGATT+TGG 0.431104 tig0005300:+28930 Msa1342230:CDS
GTTTAGGTTGGTTCTATAGA+CGG 0.441257 tig0005300:-29727 None:intergenic
GGAACAGGCAATGGAAGCTC+CGG 0.443643 tig0005300:+27919 Msa1342230:CDS
GGCTGCCACGTCAAAATAAT+CGG 0.443651 tig0005300:-27770 None:intergenic
GCTTTGCTACTTTCGGCAAA+AGG 0.444059 tig0005300:+26911 Msa1342230:five_prime_UTR
TCAATAGACCGCATTTGAAC+CGG 0.444590 tig0005300:-28225 None:intergenic
TCTGTTCGGTGCTTGTTTGT+TGG 0.446381 tig0005300:+26859 Msa1342230:five_prime_UTR
GCTGAAAGACACTTTAAAAC+CGG 0.447229 tig0005300:+28065 Msa1342230:CDS
CTTTCCACGTTGATTCTTGA+CGG 0.448530 tig0005300:-27632 None:intergenic
GTTCAAATGCGGTCTATTGA+TGG 0.451860 tig0005300:+28228 Msa1342230:CDS
TTCCGTCGAATCTGCGACGG+CGG 0.453716 tig0005300:+27987 Msa1342230:CDS
AATGGAAGCTCCGGCGGGAG+AGG 0.454766 tig0005300:+27928 Msa1342230:CDS
TGAACCGGGTTTACTTGAAC+CGG 0.456051 tig0005300:+28206 Msa1342230:CDS
TTGAAATACGAGCCATTGGC+CGG 0.457567 tig0005300:-28458 None:intergenic
GTGTCATCCGCCGAGAAAAT+CGG 0.458396 tig0005300:-27853 None:intergenic
CCGGGTAAAGACGGATATAT+AGG 0.461036 tig0005300:+31423 Msa1342230:three_prime_UTR
TATGTATGGGGTGAGATAGC+TGG 0.461828 tig0005300:+28924 Msa1342230:CDS
TTTAGGTTGGTTCTATAGAC+GGG 0.463219 tig0005300:-29726 None:intergenic
TCCGTCGAATCTGCGACGGC+GGG 0.463860 tig0005300:+27988 Msa1342230:CDS
CAACATCAGGTATCTGCTTA+GGG 0.467164 tig0005300:-27558 None:intergenic
GTTGGTTCTATAGACGGGTT+GGG 0.467229 tig0005300:-29721 None:intergenic
ACATGTGCTTCATAATAAAC+AGG 0.468166 tig0005300:+28317 Msa1342230:CDS
CGAGATGGAAGGCGAAGGAT+TGG 0.469895 tig0005300:+28433 Msa1342230:CDS
ACCAAGTGTGTGGCGGTTGA+TGG 0.471814 tig0005300:+28255 Msa1342230:CDS
GGGGAAGAAATTCTACCGTC+AGG 0.473318 tig0005300:+27897 Msa1342230:CDS
GTTTGTATATAGCAAGTTGA+AGG 0.473804 tig0005300:+28900 Msa1342230:intron
AATGTGGAGTCAGTTCTGTT+TGG 0.474082 tig0005300:+29550 Msa1342230:CDS
GGTTGGTTCTATAGACGGGT+TGG 0.477005 tig0005300:-29722 None:intergenic
GCAAGTTGAAGGGTATGTAT+GGG 0.477898 tig0005300:+28911 Msa1342230:intron
TACCGTCAGGGAACAGGCAA+TGG 0.479650 tig0005300:+27910 Msa1342230:CDS
CGAATCTGCGACGGCGGGGA+TGG 0.480183 tig0005300:+27993 Msa1342230:CDS
TTGGGTTTGGGCTTCTAGGT+GGG 0.481384 tig0005300:-29703 None:intergenic
ACAGGCAATGGAAGCTCCGG+CGG 0.482595 tig0005300:+27922 Msa1342230:CDS
GTCAACGGCCGTGGCGGCGA+CGG 0.484836 tig0005300:-27599 None:intergenic
GGATTTCTCAAGAGACTGTT+CGG 0.485627 tig0005300:+27949 Msa1342230:CDS
GTGGCAGCCGGTGCCGGCGT+CGG 0.487538 tig0005300:+27784 Msa1342230:CDS
AAAAGAAGAGTGCAAATAGC+AGG 0.488103 tig0005300:+31486 Msa1342230:three_prime_UTR
CGCACCGGTAGGATTATTCA+TGG 0.488768 tig0005300:-28286 None:intergenic
TGTGGCGGTTGATGGTGGTT+TGG 0.489151 tig0005300:+28263 Msa1342230:CDS
TCATAGCACGGTATCAAAAC+CGG 0.489644 tig0005300:-28084 None:intergenic
CTTGCATCTGTATCCACATT+GGG 0.490760 tig0005300:-29472 None:intergenic
TGTTGATCAGGCCGTTGCTA+TGG 0.491992 tig0005300:+28500 Msa1342230:CDS
AAGAAGATTATTATTGAATG+AGG 0.492160 tig0005300:+27170 Msa1342230:five_prime_UTR
GAAGGATTGGGCCCGGCCAA+TGG 0.492348 tig0005300:+28446 Msa1342230:CDS
ACGGCCGTGGCGGCGACGGT+TGG 0.499828 tig0005300:-27595 None:intergenic
AGCAGATGAGATGTTGAAGC+AGG 0.502021 tig0005300:+29525 Msa1342230:CDS
CTCAAGAGACTGTTCGGTAG+CGG 0.503155 tig0005300:+27955 Msa1342230:CDS
TCCTCCACCCCTCGCACGAA+CGG 0.514409 tig0005300:-28345 None:intergenic
AGGAGTTTCCGTTCGTGCGA+GGG 0.515075 tig0005300:+28337 Msa1342230:CDS
CAGAGAGAAACTGAGTCAAA+AGG 0.515223 tig0005300:-27002 None:intergenic
GTGGAGTCAGTTCTGTTTGG+AGG 0.515867 tig0005300:+29553 Msa1342230:CDS
GAGAAAATTAACACAAGAGT+GGG 0.518824 tig0005300:+26954 Msa1342230:five_prime_UTR
CCTATATATCCGTCTTTACC+CGG 0.521126 tig0005300:-31423 None:intergenic
ACCACCAACCGTCGCCGCCA+CGG 0.521167 tig0005300:+27591 Msa1342230:CDS
AGGTCAACTATGATTATGAT+CGG 0.522969 tig0005300:+28406 Msa1342230:CDS
TTCTATAGGCGTCACTTCCG+AGG 0.524590 tig0005300:+27344 Msa1342230:intron
GGAAACAGAGTCAACGGCCG+TGG 0.527447 tig0005300:-27608 None:intergenic
GATGTTGAAGCAGGAGAATG+TGG 0.527488 tig0005300:+29534 Msa1342230:CDS
AACAAGATGGAGAAAGTGAA+AGG 0.528258 tig0005300:+31463 Msa1342230:three_prime_UTR
AATACCTCCGACGCCGGCAC+CGG 0.530714 tig0005300:-27791 None:intergenic
GGAAGGCGAAGGATTGGGCC+CGG 0.531527 tig0005300:+28439 Msa1342230:CDS
GAGAAGCAAAGAGTGGAGGA+GGG 0.532846 tig0005300:-27102 None:intergenic
GCAAGAACCAAGCATTGAAA+CGG 0.533106 tig0005300:+27459 Msa1342230:CDS
AACTTGTTCAGGAGCATCAG+AGG 0.533773 tig0005300:+29629 Msa1342230:CDS
GCTACGATGATCAAAAGCTC+TGG 0.535567 tig0005300:+27533 Msa1342230:CDS
GGTTGTTGAGAATCAACATC+AGG 0.536613 tig0005300:-27571 None:intergenic
TTCCATTGCCTGTTCCCTGA+CGG 0.537005 tig0005300:-27912 None:intergenic
CCCCGCCGTCGCAGATTCGA+CGG 0.537842 tig0005300:-27989 None:intergenic
GAGATGGAAGGCGAAGGATT+GGG 0.539639 tig0005300:+28434 Msa1342230:CDS
TCACTTGAAATACGAGCCAT+TGG 0.542079 tig0005300:-28462 None:intergenic
ACCATCAACCGCCACACACT+TGG 0.543430 tig0005300:-28256 None:intergenic
CGTGAAAATACCTCCGACGC+CGG 0.544652 tig0005300:-27797 None:intergenic
CAGGCAAGTGGATCAAGTAT+GGG 0.544765 tig0005300:+29439 Msa1342230:intron
GATTTGCTAGTTCTTTCGCT+TGG 0.545085 tig0005300:+28366 Msa1342230:CDS
AAAATGTTGCCGGGTAAAGA+CGG 0.545932 tig0005300:+31414 Msa1342230:three_prime_UTR
ATATAAGGAGAAGCAAAGAG+TGG 0.546945 tig0005300:-27109 None:intergenic
GACGGCGGGGATGGAGAAAA+CGG 0.553646 tig0005300:+28002 Msa1342230:CDS
GCAGCCGGTGCCGGCGTCGG+AGG 0.554285 tig0005300:+27787 Msa1342230:CDS
CACATGTGTAATCGCCGCAC+CGG 0.555745 tig0005300:-28301 None:intergenic
TGGAGTCAGTTCTGTTTGGA+GGG 0.556278 tig0005300:+29554 Msa1342230:CDS
GTTTCCGTTCGTGCGAGGGG+TGG 0.558566 tig0005300:+28341 Msa1342230:CDS
TAGAACCAACCTAAACAAAA+CGG 0.563484 tig0005300:+29734 Msa1342230:three_prime_UTR
TGAAATACGAGCCATTGGCC+GGG 0.563766 tig0005300:-28457 None:intergenic
CAGGCAATGGAAGCTCCGGC+GGG 0.564349 tig0005300:+27923 Msa1342230:CDS
CAGGAGTTTCCGTTCGTGCG+AGG 0.565614 tig0005300:+28336 Msa1342230:CDS
GGAGTTTCCGTTCGTGCGAG+GGG 0.566638 tig0005300:+28338 Msa1342230:CDS
AGAGCAACTTCGGCTGAACC+GGG 0.567221 tig0005300:+28192 Msa1342230:CDS
TTTGTATATAGCAAGTTGAA+GGG 0.567371 tig0005300:+28901 Msa1342230:intron
ATGCCCAAACGCCATAGCAA+CGG 0.571854 tig0005300:-28511 None:intergenic
CAGCAATGTAAAGATGCTGA+TGG 0.572721 tig0005300:+29498 Msa1342230:CDS
GGTCAACTATGATTATGATC+GGG 0.574808 tig0005300:+28407 Msa1342230:CDS
GGAGGTGTGTAGAGCAACTT+CGG 0.577605 tig0005300:+28182 Msa1342230:CDS
AGAGAAAATTAACACAAGAG+TGG 0.579080 tig0005300:+26953 Msa1342230:five_prime_UTR
TGTGTAATCGCCGCACCGGT+AGG 0.579559 tig0005300:-28297 None:intergenic
AAGAATGAAAATTCAGAGGG+TGG 0.586242 tig0005300:+31768 Msa1342230:three_prime_UTR
TGGAACCGGTCAGTTGTTGG+AGG 0.586781 tig0005300:+28386 Msa1342230:CDS
ATTATGATCGGGTTACGAGA+TGG 0.589388 tig0005300:+28418 Msa1342230:CDS
ACTTGCATCTGTATCCACAT+TGG 0.590823 tig0005300:-29473 None:intergenic
ATACTCGCAATCGACGGAGG+AGG 0.593613 tig0005300:+27661 Msa1342230:CDS
CACGGACATAATTAGTACTC+CGG 0.593724 tig0005300:-28536 None:intergenic
GGGTAATAATTCTATTCTAA+GGG 0.597458 tig0005300:-27036 None:intergenic
ACGTGCGGATGCTTTAGAAA+CGG 0.601408 tig0005300:+28137 Msa1342230:CDS
TACTTGAACCGGTTCAAATG+CGG 0.602507 tig0005300:+28217 Msa1342230:CDS
TAAGGAGAAGCAAAGAGTGG+AGG 0.602874 tig0005300:-27106 None:intergenic
TGGGATACTTTGCTCACAAG+AGG 0.606593 tig0005300:+31612 Msa1342230:three_prime_UTR
GTTGACCTCCAACAACTGAC+CGG 0.609502 tig0005300:-28391 None:intergenic
CTTGAGAAATCCTCTCCCGC+CGG 0.609642 tig0005300:-27938 None:intergenic
CTGATCAACAAGGTCAGCGG+AGG 0.610850 tig0005300:-28487 None:intergenic
TGATGTTTACATAGATAGAG+AGG 0.611209 tig0005300:+26883 Msa1342230:five_prime_UTR
TTGGCCATGAATAATCCTAC+CGG 0.612580 tig0005300:+28282 Msa1342230:CDS
TGAACCGGTTCAAGTAAACC+CGG 0.613116 tig0005300:-28210 None:intergenic
AAGAGACTGTTCGGTAGCGG+AGG 0.614347 tig0005300:+27958 Msa1342230:CDS
AACAGAGTCAACGGCCGTGG+CGG 0.614880 tig0005300:-27605 None:intergenic
GAGTTCCGTCGAATCTGCGA+CGG 0.615964 tig0005300:+27984 Msa1342230:CDS
ATATGTATACTCGCAATCGA+CGG 0.617077 tig0005300:+27655 Msa1342230:CDS
GACGGCGGAAACAGAGTCAA+CGG 0.623711 tig0005300:-27614 None:intergenic
AAGTGTGTGGCGGTTGATGG+TGG 0.623727 tig0005300:+28258 Msa1342230:CDS
AGCAATGTAAAGATGCTGAT+GGG 0.623748 tig0005300:+29499 Msa1342230:CDS
TGTATACTCGCAATCGACGG+AGG 0.625011 tig0005300:+27658 Msa1342230:CDS
GGGAAGAAATTCTACCGTCA+GGG 0.626899 tig0005300:+27898 Msa1342230:CDS
ACATGAACATGACAGGCAAG+TGG 0.629207 tig0005300:+29427 Msa1342230:intron
AAGGGTGGGAAGATCTCTGT+GGG 0.631445 tig0005300:+31593 Msa1342230:three_prime_UTR
GTGCTATGATTTATCCAGTA+CGG 0.631624 tig0005300:+28098 Msa1342230:CDS
CAAGTTGAAGGGTATGTATG+GGG 0.633709 tig0005300:+28912 Msa1342230:CDS
GCTTGTTTGAAAGCAACAGT+GGG 0.637490 tig0005300:-29670 None:intergenic
GGTATGCGAGGCATTCTCGC+CGG 0.639751 tig0005300:+27682 Msa1342230:CDS
TTGTTCAGGAGCATCAGAGG+AGG 0.639976 tig0005300:+29632 Msa1342230:CDS
AGGCAAGTGGATCAAGTATG+GGG 0.644681 tig0005300:+29440 Msa1342230:intron
TGATCGGGTTACGAGATGGA+AGG 0.648112 tig0005300:+28422 Msa1342230:CDS
GGTAAAGACGGATATATAGG+AGG 0.648744 tig0005300:+31426 Msa1342230:three_prime_UTR
ATCGACGGAGGAGGTATGCG+AGG 0.653166 tig0005300:+27670 Msa1342230:CDS
GGCCTGATCAACAAGGTCAG+CGG 0.653320 tig0005300:-28490 None:intergenic
AGCTTGTTTGAAAGCAACAG+TGG 0.657080 tig0005300:-29671 None:intergenic
AGAAGAGTGCAAATAGCAGG+TGG 0.662294 tig0005300:+31489 Msa1342230:three_prime_UTR
TAGCAACGGCCTGATCAACA+AGG 0.664417 tig0005300:-28497 None:intergenic
CCGTCGAATCTGCGACGGCG+GGG 0.668981 tig0005300:+27989 Msa1342230:CDS
GGTTACGAGATGGAAGGCGA+AGG 0.671448 tig0005300:+28428 Msa1342230:CDS
GGATCAAGTATGGGGCAATG+TGG 0.678401 tig0005300:+29448 Msa1342230:CDS
TGTTTGCTACAAAAGATCAA+CGG 0.678892 tig0005300:+27827 Msa1342230:CDS
TCCACGTTGATTCTTGACGG+CGG 0.686575 tig0005300:-27629 None:intergenic
GGGGCAATGTGGTCCCAATG+TGG 0.693974 tig0005300:+29459 Msa1342230:CDS
TTGATGAACATACCTGAACA+CGG 0.698028 tig0005300:-28554 None:intergenic
TGGTGTAACCAAGTGTGTGG+CGG 0.702857 tig0005300:+28248 Msa1342230:CDS
TGATGGTGTAACCAAGTGTG+TGG 0.703336 tig0005300:+28245 Msa1342230:CDS
AAAGGGTGGGAAGATCTCTG+TGG 0.709815 tig0005300:+31592 Msa1342230:three_prime_UTR
CATGAATAATCCTACCGGTG+CGG 0.712541 tig0005300:+28287 Msa1342230:CDS
GTACTGGATAAATCATAGCA+CGG 0.718842 tig0005300:-28096 None:intergenic
TCTCGGCGGATGACACGTGG+CGG 0.736625 tig0005300:+27860 Msa1342230:CDS
TCCGCCGTCAAGAATCAACG+TGG 0.787406 tig0005300:+27628 Msa1342230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAAATATGAAATATATA+AGG - tig0005300:27127-27146 None:intergenic 10.0%
!!! GTATGTATTTTTTTTTAATT+TGG + tig0005300:27192-27211 Msa1342230:intron 10.0%
!!! TATTTTTTTTTAATTTGGAA+TGG + tig0005300:27197-27216 Msa1342230:intron 10.0%
!!! ATTTAATTTACAATATTGTT+TGG + tig0005300:28591-28610 Msa1342230:intron 10.0%
!! TATAGAATTACTATATAAAA+TGG + tig0005300:30373-30392 Msa1342230:intron 10.0%
!!! GTTTTTTTATTTTGAAATTA+CGG + tig0005300:30680-30699 Msa1342230:intron 10.0%
!!! TTTTTTTATTTTGAAATTAC+GGG + tig0005300:30681-30700 Msa1342230:intron 10.0%
!!! TCATTTTTTTTCTTTTAATT+TGG + tig0005300:31277-31296 Msa1342230:intron 10.0%
!! TGTTGAATTGATAAAAATTA+AGG + tig0005300:28794-28813 Msa1342230:intron 15.0%
!! GTTGAATTGATAAAAATTAA+GGG + tig0005300:28795-28814 Msa1342230:intron 15.0%
!! TTGAATTGATAAAAATTAAG+GGG + tig0005300:28796-28815 Msa1342230:intron 15.0%
!!! TTTTTGTTAATTTACCAAAA+AGG - tig0005300:29251-29270 None:intergenic 15.0%
!! AATTACTATATAAAATGGTT+AGG + tig0005300:30378-30397 Msa1342230:intron 15.0%
!! AAATAAAAAAACAAACAAAC+CGG - tig0005300:30672-30691 None:intergenic 15.0%
!! TTGACTAAATAATGTAAATT+TGG + tig0005300:31036-31055 Msa1342230:intron 15.0%
!! TGACTAAATAATGTAAATTT+GGG + tig0005300:31037-31056 Msa1342230:intron 15.0%
!! AGAAAAAAAATGATAAGATT+TGG - tig0005300:31270-31289 None:intergenic 15.0%
!! AAGAAGATTATTATTGAATG+AGG + tig0005300:27170-27189 Msa1342230:five_prime_UTR 20.0%
!!! TCTTTTTAGCTCTTTTTATT+TGG - tig0005300:27274-27293 None:intergenic 20.0%
!!! TCTTCTTATCTTTTTTCTAT+AGG + tig0005300:27330-27349 Msa1342230:intron 20.0%
!! AGAAAAGCAGAAAATAATAA+TGG + tig0005300:27414-27433 Msa1342230:exon 20.0%
!!! ATAGTTTTGATTTTCGTTTA+TGG + tig0005300:28160-28179 Msa1342230:CDS 20.0%
!!! TAGTTTTGATTTTCGTTTAT+GGG + tig0005300:28161-28180 Msa1342230:CDS 20.0%
!! TACGGAGTTAAAAAAAAATA+AGG + tig0005300:28665-28684 Msa1342230:intron 20.0%
!! ACGGAGTTAAAAAAAAATAA+GGG + tig0005300:28666-28685 Msa1342230:intron 20.0%
!!! TACATTTTAGTATAGTTACA+TGG + tig0005300:28737-28756 Msa1342230:intron 20.0%
!!! CAATTTTAGGAAATTTTTGT+TGG + tig0005300:29018-29037 Msa1342230:intron 20.0%
!! AACTATTGAAGTAATTATTG+GGG - tig0005300:29192-29211 None:intergenic 20.0%
!! CAACTATTGAAGTAATTATT+GGG - tig0005300:29193-29212 None:intergenic 20.0%
!! TCAACTATTGAAGTAATTAT+TGG - tig0005300:29194-29213 None:intergenic 20.0%
!! TCATAAATAAAATCAGATCA+TGG + tig0005300:30577-30596 Msa1342230:intron 20.0%
!! TATTTGGTTACATATTTCTT+TGG + tig0005300:30866-30885 Msa1342230:intron 20.0%
!!! GAATTCTATTTATTTTGCAA+AGG + tig0005300:31072-31091 Msa1342230:intron 20.0%
!!! ATATTTCTGTCTTGTTTTTT+TGG - tig0005300:31194-31213 None:intergenic 20.0%
!! TGGTAAATATACTATATGTT+TGG - tig0005300:31230-31249 None:intergenic 20.0%
!! TATTATAAATTTCAAGAGCA+AGG - tig0005300:31311-31330 None:intergenic 20.0%
!! ATAATATTTCATTTCGTGAA+TGG + tig0005300:31325-31344 Msa1342230:intron 20.0%
!! AAAAAAGAATGAAAATTCAG+AGG + tig0005300:31764-31783 Msa1342230:three_prime_UTR 20.0%
!! AAAAAGAATGAAAATTCAGA+GGG + tig0005300:31765-31784 Msa1342230:three_prime_UTR 20.0%
!! TGGGATTTTAGATTACAAAA+GGG + tig0005300:26973-26992 Msa1342230:five_prime_UTR 25.0%
!! ATTTTAGATTACAAAAGGGT+GGG + tig0005300:26977-26996 Msa1342230:five_prime_UTR 25.0%
! GGGTAATAATTCTATTCTAA+GGG - tig0005300:27039-27058 None:intergenic 25.0%
! AGGGTAATAATTCTATTCTA+AGG - tig0005300:27040-27059 None:intergenic 25.0%
!!! TCATATTTCAAAGTGTTTTC+TGG + tig0005300:27135-27154 Msa1342230:five_prime_UTR 25.0%
!!! TTTTTTTTAACTCCGTACTA+GGG - tig0005300:28662-28681 None:intergenic 25.0%
!!! TTTTTTTTTAACTCCGTACT+AGG - tig0005300:28663-28682 None:intergenic 25.0%
!! TTTGTATATAGCAAGTTGAA+GGG + tig0005300:28901-28920 Msa1342230:intron 25.0%
! AAAATTGAAACACATTCTTC+TGG - tig0005300:29005-29024 None:intergenic 25.0%
!! GAAGAATGTGTTTCAATTTT+AGG + tig0005300:29005-29024 Msa1342230:intron 25.0%
! GAAACTAATTACCAAAACTA+TGG - tig0005300:29045-29064 None:intergenic 25.0%
!! ATTAGTTTCATTATAGCATG+TGG + tig0005300:29056-29075 Msa1342230:intron 25.0%
!!! CTTAATTTTGATCCTAAAGA+CGG - tig0005300:29137-29156 None:intergenic 25.0%
! CGAGATTATTGAATTTCATT+TGG + tig0005300:29165-29184 Msa1342230:intron 25.0%
!!! TGTGTTCTAAAATACCTTTT+TGG + tig0005300:29234-29253 Msa1342230:intron 25.0%
!! TTGGTAATTTATTACTCAAG+GGG - tig0005300:29834-29853 None:intergenic 25.0%
!! CTTGGTAATTTATTACTCAA+GGG - tig0005300:29835-29854 None:intergenic 25.0%
!!! GGTCTTTGGTAATTTTTAAT+GGG + tig0005300:30158-30177 Msa1342230:intron 25.0%
!!! TTTGGTAATTTTTAATGGGT+GGG + tig0005300:30162-30181 Msa1342230:intron 25.0%
! TAAAGACATCCACAAATTAA+GGG - tig0005300:30199-30218 None:intergenic 25.0%
! TTAAAGACATCCACAAATTA+AGG - tig0005300:30200-30219 None:intergenic 25.0%
!! ATTGTTGTTACATACTTACA+TGG + tig0005300:30407-30426 Msa1342230:intron 25.0%
! TAATACTAACAAATGAGTGT+CGG - tig0005300:30470-30489 None:intergenic 25.0%
!! TCATTTGTTAGTATTAGGAA+AGG + tig0005300:30474-30493 Msa1342230:intron 25.0%
!! CATTTGTTAGTATTAGGAAA+GGG + tig0005300:30475-30494 Msa1342230:intron 25.0%
!! TAGTCAATCTAGTTCAAAAT+AGG + tig0005300:30503-30522 Msa1342230:intron 25.0%
!! ATCTAGTTCAAAATAGGAAA+AGG + tig0005300:30509-30528 Msa1342230:intron 25.0%
!! TCTAGTTCAAAATAGGAAAA+GGG + tig0005300:30510-30529 Msa1342230:intron 25.0%
!!! GTTAAGAGGGTATTTTATTT+TGG + tig0005300:30554-30573 Msa1342230:intron 25.0%
! TAAATAAAATCAGATCATGG+AGG + tig0005300:30580-30599 Msa1342230:intron 25.0%
! TGTCATAATAAAGTTATTGC+CGG + tig0005300:30650-30669 Msa1342230:intron 25.0%
! GTGATCTTTATTGTACAAAA+AGG + tig0005300:30731-30750 Msa1342230:intron 25.0%
! TACTTGAATTTCTACTTGTT+TGG + tig0005300:30774-30793 Msa1342230:intron 25.0%
! ACTTGAATTTCTACTTGTTT+GGG + tig0005300:30775-30794 Msa1342230:intron 25.0%
! GTAACCAAATATATACTTGA+AGG - tig0005300:30857-30876 None:intergenic 25.0%
!!! ATTTTCATGATTTTGAGTAG+TGG + tig0005300:30964-30983 Msa1342230:intron 25.0%
! TTTGATTGAGAAAAACAACA+AGG - tig0005300:31357-31376 None:intergenic 25.0%
! CATGTAATAAAATGTTTGCA+GGG + tig0005300:31380-31399 Msa1342230:intron 25.0%
! AAAGCAAAAAAAGAACAAGA+TGG + tig0005300:31450-31469 Msa1342230:three_prime_UTR 25.0%
!!! TTTACTTTTGAAGATAGACA+AGG + tig0005300:31529-31548 Msa1342230:three_prime_UTR 25.0%
!!! TTACTTTTGAAGATAGACAA+GGG + tig0005300:31530-31549 Msa1342230:three_prime_UTR 25.0%
! ACAAGTGGTGTAATTAAAAA+GGG + tig0005300:31575-31594 Msa1342230:three_prime_UTR 25.0%
!!! TACACTTTGTTTTTCTTTCT+TGG - tig0005300:31688-31707 None:intergenic 25.0%
! TGTTGTAATTTGGCATTTTC+TGG + tig0005300:26835-26854 Msa1342230:five_prime_UTR 30.0%
TGATGTTTACATAGATAGAG+AGG + tig0005300:26883-26902 Msa1342230:five_prime_UTR 30.0%
AGAGAAAATTAACACAAGAG+TGG + tig0005300:26953-26972 Msa1342230:five_prime_UTR 30.0%
GAGAAAATTAACACAAGAGT+GGG + tig0005300:26954-26973 Msa1342230:five_prime_UTR 30.0%
! GTGGGATTTTAGATTACAAA+AGG + tig0005300:26972-26991 Msa1342230:five_prime_UTR 30.0%
! GATTTTAGATTACAAAAGGG+TGG + tig0005300:26976-26995 Msa1342230:five_prime_UTR 30.0%
CAGTGAAAAACTAATTGTGA+GGG - tig0005300:27059-27078 None:intergenic 30.0%
ACAGTGAAAAACTAATTGTG+AGG - tig0005300:27060-27079 None:intergenic 30.0%
AATGCGTTGAAGAAAAAATC+CGG + tig0005300:27727-27746 Msa1342230:CDS 30.0%
! TGTTTGCTACAAAAGATCAA+CGG + tig0005300:27827-27846 Msa1342230:CDS 30.0%
!!! TTTTGATTTTCGTTTATGGG+AGG + tig0005300:28164-28183 Msa1342230:CDS 30.0%
ACATGTGCTTCATAATAAAC+AGG + tig0005300:28317-28336 Msa1342230:CDS 30.0%
AGGTCAACTATGATTATGAT+CGG + tig0005300:28406-28425 Msa1342230:CDS 30.0%
!! CAACTTGCTATATACAAACA+AGG - tig0005300:28899-28918 None:intergenic 30.0%
! GTTTGTATATAGCAAGTTGA+AGG + tig0005300:28900-28919 Msa1342230:intron 30.0%
! TTTTTGTTGGTCCATAGTTT+TGG + tig0005300:29031-29050 Msa1342230:intron 30.0%
ACAAAAAGCCTAATCTGAAT+TGG + tig0005300:29264-29283 Msa1342230:intron 30.0%
TAGAACCAACCTAAACAAAA+CGG + tig0005300:29734-29753 Msa1342230:three_prime_UTR 30.0%
! CTTTCAAACAAAGCTTTTCA+GGG + tig0005300:29806-29825 Msa1342230:intron 30.0%
! TTTCAAACAAAGCTTTTCAG+GGG + tig0005300:29807-29826 Msa1342230:intron 30.0%
! CCTTGGTAATTTATTACTCA+AGG - tig0005300:29836-29855 None:intergenic 30.0%
CCTTGAGTAATAAATTACCA+AGG + tig0005300:29833-29852 Msa1342230:intron 30.0%
AAATAAAGATGCTTTCACCT+TGG - tig0005300:29853-29872 None:intergenic 30.0%
ATTGTTATCTGAGTAGTACT+TGG - tig0005300:29983-30002 None:intergenic 30.0%
AGTTTAGAGGTGAAAACAAT+AGG - tig0005300:30067-30086 None:intergenic 30.0%
!! CGGTCTTTGGTAATTTTTAA+TGG + tig0005300:30157-30176 Msa1342230:intron 30.0%
!! CTTTGGTAATTTTTAATGGG+TGG + tig0005300:30161-30180 Msa1342230:intron 30.0%
!! TTGGTAATTTTTAATGGGTG+GGG + tig0005300:30163-30182 Msa1342230:intron 30.0%
! TAATCAACACCCTTAATTTG+TGG + tig0005300:30187-30206 Msa1342230:intron 30.0%
ATTACTATGATGAATCTGTG+TGG - tig0005300:30234-30253 None:intergenic 30.0%
! TCTATATTGTACTGATGATG+AGG - tig0005300:30359-30378 None:intergenic 30.0%
TGAGAGAACATAAGTTATGT+CGG + tig0005300:30440-30459 Msa1342230:intron 30.0%
! GACACTCATTTGTTAGTATT+AGG + tig0005300:30469-30488 Msa1342230:intron 30.0%
TTCAAAATAGGAAAAGGGTA+GGG + tig0005300:30515-30534 Msa1342230:intron 30.0%
!!! TATTTTGAAATTACGGGTTG+TGG + tig0005300:30687-30706 Msa1342230:intron 30.0%
!! TGTACAAAAAGGTATTTCTG+AGG + tig0005300:30742-30761 Msa1342230:intron 30.0%
!! GTACAAAAAGGTATTTCTGA+GGG + tig0005300:30743-30762 Msa1342230:intron 30.0%
CTTGAATTTCTACTTGTTTG+GGG + tig0005300:30776-30795 Msa1342230:intron 30.0%
TTGAATTTCTACTTGTTTGG+GGG + tig0005300:30777-30796 Msa1342230:intron 30.0%
TCCTCCTTCAAGTATATATT+TGG + tig0005300:30850-30869 Msa1342230:intron 30.0%
ACCAAATATATACTTGAAGG+AGG - tig0005300:30854-30873 None:intergenic 30.0%
ATAATGTAAATTTGGGCAGT+TGG + tig0005300:31044-31063 Msa1342230:intron 30.0%
TTTGCAAAGGAATGATGATA+TGG + tig0005300:31085-31104 Msa1342230:intron 30.0%
TTGCAAAGGAATGATGATAT+GGG + tig0005300:31086-31105 Msa1342230:intron 30.0%
CAAAACAAAAAGTAATGTCG+CGG + tig0005300:31157-31176 Msa1342230:intron 30.0%
! GATTTGGTACAATCAAATTG+TGG - tig0005300:31254-31273 None:intergenic 30.0%
! CCTGCAAACATTTTATTACA+TGG - tig0005300:31382-31401 None:intergenic 30.0%
CCATGTAATAAAATGTTTGC+AGG + tig0005300:31379-31398 Msa1342230:intron 30.0%
TAAAATGTTTGCAGGGAATA+TGG + tig0005300:31387-31406 Msa1342230:intron 30.0%
ATATGGTCAAAAAATGTTGC+CGG + tig0005300:31404-31423 Msa1342230:three_prime_UTR 30.0%
GACAAGTGGTGTAATTAAAA+AGG + tig0005300:31574-31593 Msa1342230:three_prime_UTR 30.0%
! ACTACTAGTTGAAGCTTTTT+AGG + tig0005300:31707-31726 Msa1342230:three_prime_UTR 30.0%
! CTACTAGTTGAAGCTTTTTA+GGG + tig0005300:31708-31727 Msa1342230:three_prime_UTR 30.0%
ATATAAGGAGAAGCAAAGAG+TGG - tig0005300:27112-27131 None:intergenic 35.0%
!! TCAAAGTGTTTTCTGGTGAT+TGG + tig0005300:27142-27161 Msa1342230:five_prime_UTR 35.0%
! TGTGTAGAGAATTTTCACCT+CGG - tig0005300:27364-27383 None:intergenic 35.0%
ATATGTATACTCGCAATCGA+CGG + tig0005300:27655-27674 Msa1342230:CDS 35.0%
! AAGATAAGCGAGTGTTTTTC+CGG - tig0005300:27704-27723 None:intergenic 35.0%
! AACGGTGAAAGAAGCTTTTA+CGG + tig0005300:28020-28039 Msa1342230:CDS 35.0%
!! GCTGAAAGACACTTTAAAAC+CGG + tig0005300:28065-28084 Msa1342230:CDS 35.0%
GTACTGGATAAATCATAGCA+CGG - tig0005300:28099-28118 None:intergenic 35.0%
GTGCTATGATTTATCCAGTA+CGG + tig0005300:28098-28117 Msa1342230:CDS 35.0%
GGTCAACTATGATTATGATC+GGG + tig0005300:28407-28426 Msa1342230:CDS 35.0%
TACTAATTATGTCCGTGTTC+AGG + tig0005300:28542-28561 Msa1342230:CDS 35.0%
TTGATGAACATACCTGAACA+CGG - tig0005300:28557-28576 None:intergenic 35.0%
ATGTTAAGTGTGTTGAGAGA+TGG + tig0005300:28714-28733 Msa1342230:intron 35.0%
GGTTGAGTTTGAGAATAATG+AGG + tig0005300:28758-28777 Msa1342230:intron 35.0%
GAGAATAATGAGGTGTAAAC+AGG + tig0005300:28768-28787 Msa1342230:intron 35.0%
TCTGTGTCACAGAAATGAAA+TGG + tig0005300:29098-29117 Msa1342230:intron 35.0%
TATGTTTGTTTGCCGTCTTT+AGG + tig0005300:29122-29141 Msa1342230:intron 35.0%
!!! GTATTTTAGAACACACTGAG+GGG - tig0005300:29229-29248 None:intergenic 35.0%
!!! GGTATTTTAGAACACACTGA+GGG - tig0005300:29230-29249 None:intergenic 35.0%
!!! AGGTATTTTAGAACACACTG+AGG - tig0005300:29231-29250 None:intergenic 35.0%
AAAAGCCTAATCTGAATTGG+TGG + tig0005300:29267-29286 Msa1342230:intron 35.0%
AAAGCCTAATCTGAATTGGT+GGG + tig0005300:29268-29287 Msa1342230:intron 35.0%
TGTGATCGAGTTTATTATGC+TGG + tig0005300:29324-29343 Msa1342230:intron 35.0%
GATCAATTCATGCTTAGTTC+AGG - tig0005300:29351-29370 None:intergenic 35.0%
! GTTTGTTACATGAACATGAC+AGG + tig0005300:29420-29439 Msa1342230:intron 35.0%
ATCAGCATCTTTACATTGCT+GGG - tig0005300:29499-29518 None:intergenic 35.0%
AGCAATGTAAAGATGCTGAT+GGG + tig0005300:29499-29518 Msa1342230:CDS 35.0%
GTAACTTTCAGAAGCTTGAT+TGG + tig0005300:29596-29615 Msa1342230:CDS 35.0%
!! TTTAGGTTGGTTCTATAGAC+GGG - tig0005300:29729-29748 None:intergenic 35.0%
!! GTTTAGGTTGGTTCTATAGA+CGG - tig0005300:29730-29749 None:intergenic 35.0%
!! CCTGAAAAGCTTTGTTTGAA+AGG - tig0005300:29808-29827 None:intergenic 35.0%
! CCTTTCAAACAAAGCTTTTC+AGG + tig0005300:29805-29824 Msa1342230:intron 35.0%
! AATCTAAGTTGAGCAATGCA+GGG - tig0005300:29943-29962 None:intergenic 35.0%
TCTGTAGAAACTCTGTTGAT+GGG + tig0005300:30019-30038 Msa1342230:intron 35.0%
AGTGTGTTCGAATAGTTTAG+AGG - tig0005300:30080-30099 None:intergenic 35.0%
CAGCTAAATAAACACAAGCA+CGG + tig0005300:30137-30156 Msa1342230:intron 35.0%
TACATACTTACATGGTCGTA+TGG + tig0005300:30415-30434 Msa1342230:intron 35.0%
GAGAGAACATAAGTTATGTC+GGG + tig0005300:30441-30460 Msa1342230:intron 35.0%
GTTCAAAATAGGAAAAGGGT+AGG + tig0005300:30514-30533 Msa1342230:intron 35.0%
GAACTTGGAAGATGTTAAGA+GGG + tig0005300:30541-30560 Msa1342230:intron 35.0%
ACTACGGAAAAAACTTTGGA+GGG - tig0005300:30611-30630 None:intergenic 35.0%
!!! TTTTTTCCGTAGTCCTGAAA+AGG + tig0005300:30618-30637 Msa1342230:intron 35.0%
CACAAAGAACCCAATTAGAA+CGG - tig0005300:30811-30830 None:intergenic 35.0%
TTCTAATTGGGTTCTTTGTG+TGG + tig0005300:30811-30830 Msa1342230:intron 35.0%
GGCATAGATAATTTCCATCT+TGG - tig0005300:30904-30923 None:intergenic 35.0%
TCAGAAGTCATCTATGCAAA+GGG - tig0005300:30925-30944 None:intergenic 35.0%
TAGTGGTCCTAATATGCTAT+TGG + tig0005300:30981-31000 Msa1342230:intron 35.0%
TAAATTTGGGCAGTTGGATA+TGG + tig0005300:31050-31069 Msa1342230:intron 35.0%
TGCAAAGGAATGATGATATG+GGG + tig0005300:31087-31106 Msa1342230:intron 35.0%
TGGTACAATCAAATTGTGGT+TGG - tig0005300:31250-31269 None:intergenic 35.0%
AATTTCAAGAGCAAGGACTA+AGG - tig0005300:31304-31323 None:intergenic 35.0%
TATGGTCAAAAAATGTTGCC+GGG + tig0005300:31405-31424 Msa1342230:three_prime_UTR 35.0%
AACAAGATGGAGAAAGTGAA+AGG + tig0005300:31463-31482 Msa1342230:three_prime_UTR 35.0%
! AAAAGAAGAGTGCAAATAGC+AGG + tig0005300:31486-31505 Msa1342230:three_prime_UTR 35.0%
TGTTGAGTGAAAAAGACAAG+TGG + tig0005300:31560-31579 Msa1342230:three_prime_UTR 35.0%
AGTGGTGTAATTAAAAAGGG+TGG + tig0005300:31578-31597 Msa1342230:three_prime_UTR 35.0%
GTGGTGTAATTAAAAAGGGT+GGG + tig0005300:31579-31598 Msa1342230:three_prime_UTR 35.0%
TAATAGCTAGAAAGATGGAG+TGG - tig0005300:31654-31673 None:intergenic 35.0%
!! ACTCCATCTTTCTAGCTATT+AGG + tig0005300:31653-31672 Msa1342230:intron 35.0%
!! CTCCATCTTTCTAGCTATTA+GGG + tig0005300:31654-31673 Msa1342230:intron 35.0%
TACCCTAATAGCTAGAAAGA+TGG - tig0005300:31659-31678 None:intergenic 35.0%
AAGAATGAAAATTCAGAGGG+TGG + tig0005300:31768-31787 Msa1342230:three_prime_UTR 35.0%
!!! TGGCATTTTCTGGTTCTGTT+CGG + tig0005300:26845-26864 Msa1342230:five_prime_UTR 40.0%
CAGAGAGAAACTGAGTCAAA+AGG - tig0005300:27005-27024 None:intergenic 40.0%
!! GCAAGAACCAAGCATTGAAA+CGG + tig0005300:27459-27478 Msa1342230:CDS 40.0%
AGCTTATCCGTTTCAATGCT+TGG - tig0005300:27469-27488 None:intergenic 40.0%
CTTGAGAGCAAGTTTCTCTT+TGG + tig0005300:27511-27530 Msa1342230:CDS 40.0%
CAACATCAGGTATCTGCTTA+GGG - tig0005300:27561-27580 None:intergenic 40.0%
TCAACATCAGGTATCTGCTT+AGG - tig0005300:27562-27581 None:intergenic 40.0%
GGTTGTTGAGAATCAACATC+AGG - tig0005300:27574-27593 None:intergenic 40.0%
!! CTTTCCACGTTGATTCTTGA+CGG - tig0005300:27635-27654 None:intergenic 40.0%
!!! AATCGCCGATTATTTTGACG+TGG + tig0005300:27765-27784 Msa1342230:CDS 40.0%
!! TCAACGGAAACCGATTTTCT+CGG + tig0005300:27843-27862 Msa1342230:CDS 40.0%
GGATTTCTCAAGAGACTGTT+CGG + tig0005300:27949-27968 Msa1342230:CDS 40.0%
TCATAGCACGGTATCAAAAC+CGG - tig0005300:28087-28106 None:intergenic 40.0%
! TACTTGAACCGGTTCAAATG+CGG + tig0005300:28217-28236 Msa1342230:CDS 40.0%
TCAATAGACCGCATTTGAAC+CGG - tig0005300:28228-28247 None:intergenic 40.0%
GTTCAAATGCGGTCTATTGA+TGG + tig0005300:28228-28247 Msa1342230:CDS 40.0%
TTGGCCATGAATAATCCTAC+CGG + tig0005300:28282-28301 Msa1342230:CDS 40.0%
!! GATTTGCTAGTTCTTTCGCT+TGG + tig0005300:28366-28385 Msa1342230:CDS 40.0%
ATTATGATCGGGTTACGAGA+TGG + tig0005300:28418-28437 Msa1342230:CDS 40.0%
TCACTTGAAATACGAGCCAT+TGG - tig0005300:28465-28484 None:intergenic 40.0%
CACGGACATAATTAGTACTC+CGG - tig0005300:28539-28558 None:intergenic 40.0%
! GAGTGTTGTAAACCCTAGTA+CGG + tig0005300:28647-28666 Msa1342230:intron 40.0%
GCAAAAGATATCCCCTATGA+TGG - tig0005300:28877-28896 None:intergenic 40.0%
! AGCAAGTTGAAGGGTATGTA+TGG + tig0005300:28910-28929 Msa1342230:intron 40.0%
! GCAAGTTGAAGGGTATGTAT+GGG + tig0005300:28911-28930 Msa1342230:intron 40.0%
! CAAGTTGAAGGGTATGTATG+GGG + tig0005300:28912-28931 Msa1342230:CDS 40.0%
!! AGCTGGATTTGGACTTGTTT+TGG + tig0005300:28941-28960 Msa1342230:CDS 40.0%
!! GCTGGATTTGGACTTGTTTT+GGG + tig0005300:28942-28961 Msa1342230:CDS 40.0%
TTATAGCATGTGGAATGCTG+TGG + tig0005300:29066-29085 Msa1342230:intron 40.0%
AAGCCTAATCTGAATTGGTG+GGG + tig0005300:29269-29288 Msa1342230:intron 40.0%
ATTCCCCACCAATTCAGATT+AGG - tig0005300:29275-29294 None:intergenic 40.0%
CTTGCATCTGTATCCACATT+GGG - tig0005300:29475-29494 None:intergenic 40.0%
ACTTGCATCTGTATCCACAT+TGG - tig0005300:29476-29495 None:intergenic 40.0%
CATCAGCATCTTTACATTGC+TGG - tig0005300:29500-29519 None:intergenic 40.0%
CAGCAATGTAAAGATGCTGA+TGG + tig0005300:29498-29517 Msa1342230:CDS 40.0%
AATGTGGAGTCAGTTCTGTT+TGG + tig0005300:29550-29569 Msa1342230:CDS 40.0%
GCTTGTTTGAAAGCAACAGT+GGG - tig0005300:29673-29692 None:intergenic 40.0%
! AGCTTGTTTGAAAGCAACAG+TGG - tig0005300:29674-29693 None:intergenic 40.0%
!!! GCTTACCGTTTTGTTTAGGT+TGG - tig0005300:29742-29761 None:intergenic 40.0%
!!! GTGTGCTTACCGTTTTGTTT+AGG - tig0005300:29746-29765 None:intergenic 40.0%
AAAACGGTAAGCACACTCAT+TGG + tig0005300:29750-29769 Msa1342230:intron 40.0%
! GAATCTAAGTTGAGCAATGC+AGG - tig0005300:29944-29963 None:intergenic 40.0%
GTCTGTAGAAACTCTGTTGA+TGG + tig0005300:30018-30037 Msa1342230:intron 40.0%
CTGTAGAAACTCTGTTGATG+GGG + tig0005300:30020-30039 Msa1342230:intron 40.0%
CACAAGTTTCAATGTGTTGC+TGG - tig0005300:30113-30132 None:intergenic 40.0%
ATAAACACAAGCACGGTCTT+TGG + tig0005300:30144-30163 Msa1342230:intron 40.0%
TGTCAGCTTCTGTGTATTCA+TGG + tig0005300:30309-30328 Msa1342230:intron 40.0%
CTTCTGTGTATTCATGGTCA+TGG + tig0005300:30315-30334 Msa1342230:intron 40.0%
AAATAGGAAAAGGGTAGGGT+AGG + tig0005300:30519-30538 Msa1342230:intron 40.0%
GGAACTTGGAAGATGTTAAG+AGG + tig0005300:30540-30559 Msa1342230:intron 40.0%
! CTACGGAAAAAACTTTGGAG+GGG - tig0005300:30610-30629 None:intergenic 40.0%
GACTACGGAAAAAACTTTGG+AGG - tig0005300:30612-30631 None:intergenic 40.0%
CAGGACTACGGAAAAAACTT+TGG - tig0005300:30615-30634 None:intergenic 40.0%
!! AGGTATTTCTGAGGGCATTT+AGG + tig0005300:30751-30770 Msa1342230:intron 40.0%
GATTGAGGACCGTTCTAATT+GGG + tig0005300:30799-30818 Msa1342230:intron 40.0%
CTCAGAAGTCATCTATGCAA+AGG - tig0005300:30926-30945 None:intergenic 40.0%
TGGTCCTAATATGCTATTGG+AGG + tig0005300:30984-31003 Msa1342230:intron 40.0%
GGTCCTAATATGCTATTGGA+GGG + tig0005300:30985-31004 Msa1342230:intron 40.0%
TGACCCTCCAATAGCATATT+AGG - tig0005300:30991-31010 None:intergenic 40.0%
AAAATGTTGCCGGGTAAAGA+CGG + tig0005300:31414-31433 Msa1342230:three_prime_UTR 40.0%
CCTATATATCCGTCTTTACC+CGG - tig0005300:31426-31445 None:intergenic 40.0%
GGTAAAGACGGATATATAGG+AGG + tig0005300:31426-31445 Msa1342230:three_prime_UTR 40.0%
TGAAGATAGACAAGGGTTAG+AGG + tig0005300:31537-31556 Msa1342230:three_prime_UTR 40.0%
TCACAAGAGGACAGACATTA+TGG + tig0005300:31625-31644 Msa1342230:three_prime_UTR 40.0%
AAATTCAGAGGGTGGTGAAT+TGG + tig0005300:31776-31795 Msa1342230:three_prime_UTR 40.0%
!! TCTGTTCGGTGCTTGTTTGT+TGG + tig0005300:26859-26878 Msa1342230:five_prime_UTR 45.0%
!! GGAGCTAGCTTTGCTACTTT+CGG + tig0005300:26904-26923 Msa1342230:five_prime_UTR 45.0%
!! GCTTTGCTACTTTCGGCAAA+AGG + tig0005300:26911-26930 Msa1342230:five_prime_UTR 45.0%
TAAGGAGAAGCAAAGAGTGG+AGG - tig0005300:27109-27128 None:intergenic 45.0%
GCTACGATGATCAAAAGCTC+TGG + tig0005300:27533-27552 Msa1342230:CDS 45.0%
! GATTTTCGCGTTCTGATCAC+CGG - tig0005300:27749-27768 None:intergenic 45.0%
GGCTGCCACGTCAAAATAAT+CGG - tig0005300:27773-27792 None:intergenic 45.0%
!!! GATTATTTTGACGTGGCAGC+CGG + tig0005300:27772-27791 Msa1342230:CDS 45.0%
GGGAAGAAATTCTACCGTCA+GGG + tig0005300:27898-27917 Msa1342230:CDS 45.0%
AAATTCTACCGTCAGGGAAC+AGG + tig0005300:27904-27923 Msa1342230:CDS 45.0%
! GGTGAAAGAAGCTTTTACGG+CGG + tig0005300:28023-28042 Msa1342230:CDS 45.0%
TCCGCACGTGAGAACAAAAA+CGG - tig0005300:28126-28145 None:intergenic 45.0%
!! ACGTGCGGATGCTTTAGAAA+CGG + tig0005300:28137-28156 Msa1342230:CDS 45.0%
TGAACCGGGTTTACTTGAAC+CGG + tig0005300:28206-28225 Msa1342230:CDS 45.0%
! TGAACCGGTTCAAGTAAACC+CGG - tig0005300:28213-28232 None:intergenic 45.0%
! TGATGGTGTAACCAAGTGTG+TGG + tig0005300:28245-28264 Msa1342230:CDS 45.0%
CATGAATAATCCTACCGGTG+CGG + tig0005300:28287-28306 Msa1342230:CDS 45.0%
! CTAGTTCTTTCGCTTGGAAC+CGG + tig0005300:28372-28391 Msa1342230:CDS 45.0%
TTGAAATACGAGCCATTGGC+CGG - tig0005300:28461-28480 None:intergenic 45.0%
TTGGTTGCAGCGCAAATGAT+TGG + tig0005300:28610-28629 Msa1342230:intron 45.0%
TGAGTCAATTTCACACCAGC+AGG + tig0005300:28827-28846 Msa1342230:intron 45.0%
TGTGGGGTTTCTTCCATCAT+AGG + tig0005300:28861-28880 Msa1342230:intron 45.0%
GTGGGGTTTCTTCCATCATA+GGG + tig0005300:28862-28881 Msa1342230:intron 45.0%
TGGGGTTTCTTCCATCATAG+GGG + tig0005300:28863-28882 Msa1342230:intron 45.0%
TATGTATGGGGTGAGATAGC+TGG + tig0005300:28924-28943 Msa1342230:CDS 45.0%
ACATGAACATGACAGGCAAG+TGG + tig0005300:29427-29446 Msa1342230:intron 45.0%
ACAGGCAAGTGGATCAAGTA+TGG + tig0005300:29438-29457 Msa1342230:intron 45.0%
CAGGCAAGTGGATCAAGTAT+GGG + tig0005300:29439-29458 Msa1342230:intron 45.0%
AGGCAAGTGGATCAAGTATG+GGG + tig0005300:29440-29459 Msa1342230:intron 45.0%
AGCAGATGAGATGTTGAAGC+AGG + tig0005300:29525-29544 Msa1342230:CDS 45.0%
GATGTTGAAGCAGGAGAATG+TGG + tig0005300:29534-29553 Msa1342230:CDS 45.0%
TGGAGTCAGTTCTGTTTGGA+GGG + tig0005300:29554-29573 Msa1342230:CDS 45.0%
CTGTTTGGAGGGAAGAAGAT+TGG + tig0005300:29565-29584 Msa1342230:CDS 45.0%
!! AACTTGTTCAGGAGCATCAG+AGG + tig0005300:29629-29648 Msa1342230:CDS 45.0%
!! TCTATAGACGGGTTGGGTTT+GGG - tig0005300:29718-29737 None:intergenic 45.0%
!! TTCTATAGACGGGTTGGGTT+TGG - tig0005300:29719-29738 None:intergenic 45.0%
!! GTTGGTTCTATAGACGGGTT+GGG - tig0005300:29724-29743 None:intergenic 45.0%
AAAAGGGTAGGGTAGGAACT+TGG + tig0005300:30526-30545 Msa1342230:intron 45.0%
!! GAAGCACCTTTTCAGGACTA+CGG - tig0005300:30627-30646 None:intergenic 45.0%
!!! GACATGAGAAGCACCTTTTC+AGG - tig0005300:30634-30653 None:intergenic 45.0%
! TGAAATTACGGGTTGTGGAG+TGG + tig0005300:30692-30711 Msa1342230:intron 45.0%
TCTACTTGTTTGGGGGATTG+AGG + tig0005300:30784-30803 Msa1342230:intron 45.0%
GGATTGAGGACCGTTCTAAT+TGG + tig0005300:30798-30817 Msa1342230:intron 45.0%
GGTGTCTTCAACAACCAAGA+TGG + tig0005300:30887-30906 Msa1342230:intron 45.0%
ATGATATGGGGACAACAACG+TGG + tig0005300:31099-31118 Msa1342230:intron 45.0%
CCGGGTAAAGACGGATATAT+AGG + tig0005300:31423-31442 Msa1342230:three_prime_UTR 45.0%
! AGAAGAGTGCAAATAGCAGG+TGG + tig0005300:31489-31508 Msa1342230:three_prime_UTR 45.0%
TGGGATACTTTGCTCACAAG+AGG + tig0005300:31612-31631 Msa1342230:three_prime_UTR 45.0%
GAGAAGCAAAGAGTGGAGGA+GGG - tig0005300:27105-27124 None:intergenic 50.0%
TTCTATAGGCGTCACTTCCG+AGG + tig0005300:27344-27363 Msa1342230:intron 50.0%
!! TCCACGTTGATTCTTGACGG+CGG - tig0005300:27632-27651 None:intergenic 50.0%
TGTATACTCGCAATCGACGG+AGG + tig0005300:27658-27677 Msa1342230:CDS 50.0%
!! ACGGAAACCGATTTTCTCGG+CGG + tig0005300:27846-27865 Msa1342230:CDS 50.0%
GTGTCATCCGCCGAGAAAAT+CGG - tig0005300:27856-27875 None:intergenic 50.0%
GGGGAAGAAATTCTACCGTC+AGG + tig0005300:27897-27916 Msa1342230:CDS 50.0%
TTCCATTGCCTGTTCCCTGA+CGG - tig0005300:27915-27934 None:intergenic 50.0%
CTCAAGAGACTGTTCGGTAG+CGG + tig0005300:27955-27974 Msa1342230:CDS 50.0%
! GAAGCTTTTACGGCGGAGAA+TGG + tig0005300:28030-28049 Msa1342230:CDS 50.0%
!!! GCCGTTTTTGTTCTCACGTG+CGG + tig0005300:28122-28141 Msa1342230:CDS 50.0%
! GGAGGTGTGTAGAGCAACTT+CGG + tig0005300:28182-28201 Msa1342230:CDS 50.0%
TAGAGCAACTTCGGCTGAAC+CGG + tig0005300:28191-28210 Msa1342230:CDS 50.0%
TGGTGTAACCAAGTGTGTGG+CGG + tig0005300:28248-28267 Msa1342230:CDS 50.0%
! CGCACCGGTAGGATTATTCA+TGG - tig0005300:28289-28308 None:intergenic 50.0%
GTTGACCTCCAACAACTGAC+CGG - tig0005300:28394-28413 None:intergenic 50.0%
TGATCGGGTTACGAGATGGA+AGG + tig0005300:28422-28441 Msa1342230:CDS 50.0%
GAGATGGAAGGCGAAGGATT+GGG + tig0005300:28434-28453 Msa1342230:CDS 50.0%
TGAAATACGAGCCATTGGCC+GGG - tig0005300:28460-28479 None:intergenic 50.0%
TAGCAACGGCCTGATCAACA+AGG - tig0005300:28500-28519 None:intergenic 50.0%
TGTTGATCAGGCCGTTGCTA+TGG + tig0005300:28500-28519 Msa1342230:CDS 50.0%
ATGCCCAAACGCCATAGCAA+CGG - tig0005300:28514-28533 None:intergenic 50.0%
TTCACACCAGCAGGAGAGTA+AGG + tig0005300:28836-28855 Msa1342230:intron 50.0%
TGGGGTGAGATAGCTGGATT+TGG + tig0005300:28930-28949 Msa1342230:CDS 50.0%
GGATCAAGTATGGGGCAATG+TGG + tig0005300:29448-29467 Msa1342230:CDS 50.0%
GTGGAGTCAGTTCTGTTTGG+AGG + tig0005300:29553-29572 Msa1342230:CDS 50.0%
!! CAGAAGCTTGATTGGCTTGC+TGG + tig0005300:29604-29623 Msa1342230:CDS 50.0%
! GCTTGCTGGAGAACTTGTTC+AGG + tig0005300:29618-29637 Msa1342230:CDS 50.0%
!! TTGTTCAGGAGCATCAGAGG+AGG + tig0005300:29632-29651 Msa1342230:CDS 50.0%
!! TTGGGCTTCTAGGTGGGTTT+TGG - tig0005300:29700-29719 None:intergenic 50.0%
TTGGGTTTGGGCTTCTAGGT+GGG - tig0005300:29706-29725 None:intergenic 50.0%
!! GGTTGGTTCTATAGACGGGT+TGG - tig0005300:29725-29744 None:intergenic 50.0%
! CGGAAAAAACTTTGGAGGGG+TGG - tig0005300:30607-30626 None:intergenic 50.0%
TATGCTATTGGAGGGTCACG+TGG + tig0005300:30993-31012 Msa1342230:intron 50.0%
ATGCTATTGGAGGGTCACGT+GGG + tig0005300:30994-31013 Msa1342230:intron 50.0%
AAAGGGTGGGAAGATCTCTG+TGG + tig0005300:31592-31611 Msa1342230:three_prime_UTR 50.0%
AAGGGTGGGAAGATCTCTGT+GGG + tig0005300:31593-31612 Msa1342230:three_prime_UTR 50.0%
GGAGAAGCAAAGAGTGGAGG+AGG - tig0005300:27106-27125 None:intergenic 55.0%
GACGGCGGAAACAGAGTCAA+CGG - tig0005300:27617-27636 None:intergenic 55.0%
TCCGCCGTCAAGAATCAACG+TGG + tig0005300:27628-27647 Msa1342230:CDS 55.0%
ATACTCGCAATCGACGGAGG+AGG + tig0005300:27661-27680 Msa1342230:CDS 55.0%
CGTGAAAATACCTCCGACGC+CGG - tig0005300:27800-27819 None:intergenic 55.0%
!!! CGGCGTCGGAGGTATTTTCA+CGG + tig0005300:27798-27817 Msa1342230:CDS 55.0%
! TTTTCTCGGCGGATGACACG+TGG + tig0005300:27857-27876 Msa1342230:CDS 55.0%
! GGATGACACGTGGCGGTTTT+TGG + tig0005300:27867-27886 Msa1342230:CDS 55.0%
!! TGACACGTGGCGGTTTTTGG+CGG + tig0005300:27870-27889 Msa1342230:CDS 55.0%
!!! TGGCGGTTTTTGGCGGAACA+GGG + tig0005300:27877-27896 Msa1342230:CDS 55.0%
TACCGTCAGGGAACAGGCAA+TGG + tig0005300:27910-27929 Msa1342230:CDS 55.0%
GGAACAGGCAATGGAAGCTC+CGG + tig0005300:27919-27938 Msa1342230:CDS 55.0%
CTTGAGAAATCCTCTCCCGC+CGG - tig0005300:27941-27960 None:intergenic 55.0%
! AAGAGACTGTTCGGTAGCGG+AGG + tig0005300:27958-27977 Msa1342230:CDS 55.0%
GAGTTCCGTCGAATCTGCGA+CGG + tig0005300:27984-28003 Msa1342230:CDS 55.0%
GAACAAAAACGGCGCCGTAC+TGG - tig0005300:28115-28134 None:intergenic 55.0%
AGAGCAACTTCGGCTGAACC+GGG + tig0005300:28192-28211 Msa1342230:CDS 55.0%
ACCAAGTGTGTGGCGGTTGA+TGG + tig0005300:28255-28274 Msa1342230:CDS 55.0%
ACCATCAACCGCCACACACT+TGG - tig0005300:28259-28278 None:intergenic 55.0%
!! AAGTGTGTGGCGGTTGATGG+TGG + tig0005300:28258-28277 Msa1342230:CDS 55.0%
!! TGTGGCGGTTGATGGTGGTT+TGG + tig0005300:28263-28282 Msa1342230:CDS 55.0%
CACATGTGTAATCGCCGCAC+CGG - tig0005300:28304-28323 None:intergenic 55.0%
AGGAGTTTCCGTTCGTGCGA+GGG + tig0005300:28337-28356 Msa1342230:CDS 55.0%
GCTTGGAACCGGTCAGTTGT+TGG + tig0005300:28383-28402 Msa1342230:CDS 55.0%
TGGAACCGGTCAGTTGTTGG+AGG + tig0005300:28386-28405 Msa1342230:CDS 55.0%
GGTTACGAGATGGAAGGCGA+AGG + tig0005300:28428-28447 Msa1342230:CDS 55.0%
CGAGATGGAAGGCGAAGGAT+TGG + tig0005300:28433-28452 Msa1342230:CDS 55.0%
CTGATCAACAAGGTCAGCGG+AGG - tig0005300:28490-28509 None:intergenic 55.0%
CTCCGCTGACCTTGTTGATC+AGG + tig0005300:28488-28507 Msa1342230:CDS 55.0%
GGCCTGATCAACAAGGTCAG+CGG - tig0005300:28493-28512 None:intergenic 55.0%
AGGCCGTTGCTATGGCGTTT+GGG + tig0005300:28508-28527 Msa1342230:CDS 55.0%
! CTATGGCGTTTGGGCATTGC+CGG + tig0005300:28517-28536 Msa1342230:CDS 55.0%
AGCAGGAGAGTAAGGCGTGT+GGG + tig0005300:28844-28863 Msa1342230:intron 55.0%
GTTGGGTTTGGGCTTCTAGG+TGG - tig0005300:29707-29726 None:intergenic 55.0%
GGACAACAACGTGGCAAGAC+AGG + tig0005300:31108-31127 Msa1342230:intron 55.0%
AACAGAGTCAACGGCCGTGG+CGG - tig0005300:27608-27627 None:intergenic 60.0%
GGAAACAGAGTCAACGGCCG+TGG - tig0005300:27611-27630 None:intergenic 60.0%
! ATCGACGGAGGAGGTATGCG+AGG + tig0005300:27670-27689 Msa1342230:CDS 60.0%
! GGTATGCGAGGCATTCTCGC+CGG + tig0005300:27682-27701 Msa1342230:CDS 60.0%
!!! GTGGCGGTTTTTGGCGGAAC+AGG + tig0005300:27876-27895 Msa1342230:CDS 60.0%
!!! GGCGGTTTTTGGCGGAACAG+GGG + tig0005300:27878-27897 Msa1342230:CDS 60.0%
ACAGGCAATGGAAGCTCCGG+CGG + tig0005300:27922-27941 Msa1342230:CDS 60.0%
TTCCGTCGAATCTGCGACGG+CGG + tig0005300:27987-28006 Msa1342230:CDS 60.0%
GACGGCGGGGATGGAGAAAA+CGG + tig0005300:28002-28021 Msa1342230:CDS 60.0%
! TGTGTAATCGCCGCACCGGT+AGG - tig0005300:28300-28319 None:intergenic 60.0%
CAGGAGTTTCCGTTCGTGCG+AGG + tig0005300:28336-28355 Msa1342230:CDS 60.0%
GGAGTTTCCGTTCGTGCGAG+GGG + tig0005300:28338-28357 Msa1342230:CDS 60.0%
CAGGCCGTTGCTATGGCGTT+TGG + tig0005300:28507-28526 Msa1342230:CDS 60.0%
CACACGCCTTACTCTCCTGC+TGG - tig0005300:28845-28864 None:intergenic 60.0%
CAGCAGGAGAGTAAGGCGTG+TGG + tig0005300:28843-28862 Msa1342230:intron 60.0%
GCAGGAGAGTAAGGCGTGTG+GGG + tig0005300:28845-28864 Msa1342230:intron 60.0%
GGGGCAATGTGGTCCCAATG+TGG + tig0005300:29459-29478 Msa1342230:CDS 60.0%
! CGGGTTGGGTTTGGGCTTCT+AGG - tig0005300:29710-29729 None:intergenic 60.0%
TTTGACGTGGCAGCCGGTGC+CGG + tig0005300:27778-27797 Msa1342230:CDS 65.0%
AATACCTCCGACGCCGGCAC+CGG - tig0005300:27794-27813 None:intergenic 65.0%
TCTCGGCGGATGACACGTGG+CGG + tig0005300:27860-27879 Msa1342230:CDS 65.0%
CAGGCAATGGAAGCTCCGGC+GGG + tig0005300:27923-27942 Msa1342230:CDS 65.0%
AATGGAAGCTCCGGCGGGAG+AGG + tig0005300:27928-27947 Msa1342230:CDS 65.0%
TCCGTCGAATCTGCGACGGC+GGG + tig0005300:27988-28007 Msa1342230:CDS 65.0%
GTTTCCGTTCGTGCGAGGGG+TGG + tig0005300:28341-28360 Msa1342230:CDS 65.0%
TCCTCCACCCCTCGCACGAA+CGG - tig0005300:28348-28367 None:intergenic 65.0%
GGAAGGCGAAGGATTGGGCC+CGG + tig0005300:28439-28458 Msa1342230:CDS 65.0%
GAAGGATTGGGCCCGGCCAA+TGG + tig0005300:28446-28465 Msa1342230:CDS 65.0%
ACCACCAACCGTCGCCGCCA+CGG + tig0005300:27591-27610 Msa1342230:CDS 70.0%
CCCCGCCGTCGCAGATTCGA+CGG - tig0005300:27992-28011 None:intergenic 70.0%
CCGTCGAATCTGCGACGGCG+GGG + tig0005300:27989-28008 Msa1342230:CDS 70.0%
CGAATCTGCGACGGCGGGGA+TGG + tig0005300:27993-28012 Msa1342230:CDS 70.0%
TCCGTTCGTGCGAGGGGTGG+AGG + tig0005300:28344-28363 Msa1342230:CDS 70.0%
GTCAACGGCCGTGGCGGCGA+CGG - tig0005300:27602-27621 None:intergenic 75.0%
! GCCGTGGCGGCGACGGTTGG+TGG - tig0005300:27595-27614 None:intergenic 80.0%
! ACGGCCGTGGCGGCGACGGT+TGG - tig0005300:27598-27617 None:intergenic 80.0%
!!! GTGGCAGCCGGTGCCGGCGT+CGG + tig0005300:27784-27803 Msa1342230:CDS 80.0%
!!! GCAGCCGGTGCCGGCGTCGG+AGG + tig0005300:27787-27806 Msa1342230:CDS 85.0%
Chromosome Type Strat End Strand Name
tig0005300 gene 26831 31819 26831 ID=Msa1342230;Name=Msa1342230
tig0005300 mRNA 26831 31819 26831 ID=Msa1342230-mRNA-1;Parent=Msa1342230;Name=Msa1342230-mRNA-1;_AED=0.18;_eAED=0.18;_QI=442|0.6|0.83|0.83|0.4|0.16|6|441|488
tig0005300 exon 26831 27191 26831 ID=Msa1342230-mRNA-1:exon:3512;Parent=Msa1342230-mRNA-1
tig0005300 exon 27352 28563 27352 ID=Msa1342230-mRNA-1:exon:3513;Parent=Msa1342230-mRNA-1
tig0005300 exon 28912 28977 28912 ID=Msa1342230-mRNA-1:exon:3514;Parent=Msa1342230-mRNA-1
tig0005300 exon 29442 29755 29442 ID=Msa1342230-mRNA-1:exon:3515;Parent=Msa1342230-mRNA-1
tig0005300 exon 31401 31653 31401 ID=Msa1342230-mRNA-1:exon:3516;Parent=Msa1342230-mRNA-1
tig0005300 exon 31676 31819 31676 ID=Msa1342230-mRNA-1:exon:3517;Parent=Msa1342230-mRNA-1
tig0005300 five_prime_UTR 26831 27191 26831 ID=Msa1342230-mRNA-1:five_prime_utr;Parent=Msa1342230-mRNA-1
tig0005300 five_prime_UTR 27352 27432 27352 ID=Msa1342230-mRNA-1:five_prime_utr;Parent=Msa1342230-mRNA-1
tig0005300 CDS 27433 28563 27433 ID=Msa1342230-mRNA-1:cds;Parent=Msa1342230-mRNA-1
tig0005300 CDS 28912 28977 28912 ID=Msa1342230-mRNA-1:cds;Parent=Msa1342230-mRNA-1
tig0005300 CDS 29442 29711 29442 ID=Msa1342230-mRNA-1:cds;Parent=Msa1342230-mRNA-1
tig0005300 three_prime_UTR 29712 29755 29712 ID=Msa1342230-mRNA-1:three_prime_utr;Parent=Msa1342230-mRNA-1
tig0005300 three_prime_UTR 31401 31653 31401 ID=Msa1342230-mRNA-1:three_prime_utr;Parent=Msa1342230-mRNA-1
tig0005300 three_prime_UTR 31676 31819 31676 ID=Msa1342230-mRNA-1:three_prime_utr;Parent=Msa1342230-mRNA-1
Gene Sequence

>Msa1342230

ATGGATTCTAGTGATCAATTTGAAATGCAAGAACCAAGCATTGAAACGGATAAGCTCAGCTACGAAATCTTTTCTATTCTTGAGAGCAAGTTTCTCTTTGGCTACGATGATCAAAAGCTCTGGTTCCCTAAGCAGATACCTGATGTTGATTCTCAACAACCACCAACCGTCGCCGCCACGGCCGTTGACTCTGTTTCCGCCGTCAAGAATCAACGTGGAAAGATATGTATACTCGCAATCGACGGAGGAGGTATGCGAGGCATTCTCGCCGGAAAAACACTCGCTTATCTTGAGAATGCGTTGAAGAAAAAATCCGGTGATCAGAACGCGAAAATCGCCGATTATTTTGACGTGGCAGCCGGTGCCGGCGTCGGAGGTATTTTCACGGCGATGCTGTTTGCTACAAAAGATCAACGGAAACCGATTTTCTCGGCGGATGACACGTGGCGGTTTTTGGCGGAACAGGGGAAGAAATTCTACCGTCAGGGAACAGGCAATGGAAGCTCCGGCGGGAGAGGATTTCTCAAGAGACTGTTCGGTAGCGGAGGTTCGAGTTCCGTCGAATCTGCGACGGCGGGGATGGAGAAAACGGTGAAAGAAGCTTTTACGGCGGAGAATGGTCGTTGTTTAACGCTGAAAGACACTTTAAAACCGGTTTTGATACCGTGCTATGATTTATCCAGTACGGCGCCGTTTTTGTTCTCACGTGCGGATGCTTTAGAAACGGATAGTTTTGATTTTCGTTTATGGGAGGTGTGTAGAGCAACTTCGGCTGAACCGGGTTTACTTGAACCGGTTCAAATGCGGTCTATTGATGGTGTAACCAAGTGTGTGGCGGTTGATGGTGGTTTGGCCATGAATAATCCTACCGGTGCGGCGATTACACATGTGCTTCATAATAAACAGGAGTTTCCGTTCGTGCGAGGGGTGGAGGATTTGCTAGTTCTTTCGCTTGGAACCGGTCAGTTGTTGGAGGTCAACTATGATTATGATCGGGTTACGAGATGGAAGGCGAAGGATTGGGCCCGGCCAATGGCTCGTATTTCAAGTGATGCCTCCGCTGACCTTGTTGATCAGGCCGTTGCTATGGCGTTTGGGCATTGCCGGAGTACTAATTATGTCCGTGTTCAGCAAGTTGAAGGGTATGTATGGGGTGAGATAGCTGGATTTGGACTTGTTTTGGGAATATCTCTTGATGCAAGTGGATCAAGTATGGGGCAATGTGGTCCCAATGTGGATACAGATGCAAGTCCCAGCAATGTAAAGATGCTGATGGGAATAGCAGATGAGATGTTGAAGCAGGAGAATGTGGAGTCAGTTCTGTTTGGAGGGAAGAAGATTGGAGAGCAGAGTAACTTTCAGAAGCTTGATTGGCTTGCTGGAGAACTTGTTCAGGAGCATCAGAGGAGGAGTTGCAGAATAGCTCCCACTGTTGCTTTCAAACAAGCTACACCAAAACCCACCTAG
Protein sequence

>Msa1342230

MDSSDQFEMQEPSIETDKLSYEIFSILESKFLFGYDDQKLWFPKQIPDVDSQQPPTVAATAVDSVSAVKNQRGKICILAIDGGGMRGILAGKTLAYLENALKKKSGDQNAKIADYFDVAAGAGVGGIFTAMLFATKDQRKPIFSADDTWRFLAEQGKKFYRQGTGNGSSGGRGFLKRLFGSGGSSSVESATAGMEKTVKEAFTAENGRCLTLKDTLKPVLIPCYDLSSTAPFLFSRADALETDSFDFRLWEVCRATSAEPGLLEPVQMRSIDGVTKCVAVDGGLAMNNPTGAAITHVLHNKQEFPFVRGVEDLLVLSLGTGQLLEVNYDYDRVTRWKAKDWARPMARISSDASADLVDQAVAMAFGHCRSTNYVRVQQVEGYVWGEIAGFGLVLGISLDASGSSMGQCGPNVDTDASPSNVKMLMGIADEMLKQENVESVLFGGKKIGEQSNFQKLDWLAGELVQEHQRRSCRIAPTVAFKQATPKPT*