Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179110 | KEH44035.1 | 96.813 | 251 | 7 | 1 | 1 | 251 | 1 | 250 | 3.13e-173 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179110 | sp|Q852U6|RHY1A_ARATH | 41.860 | 258 | 128 | 4 | 1 | 246 | 1 | 248 | 1.28e-42 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179110 | A0A072W173 | 96.813 | 251 | 7 | 1 | 1 | 251 | 1 | 250 | 1.50e-173 | 487 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030160 | Msa0179110 | 0.809531 | 1.806861e-50 | -8.615850e-47 |
| Msa0125650 | Msa0179110 | 0.815910 | 7.257131e-52 | -8.615850e-47 |
| Msa0179110 | Msa0257520 | 0.803228 | 3.852902e-49 | -8.615850e-47 |
| Msa0179110 | Msa0614920 | 0.816379 | 5.700731e-52 | -8.615850e-47 |
| Msa0179110 | Msa1345940 | 0.813862 | 2.065009e-51 | -8.615850e-47 |
| Msa0179110 | Msa1353890 | 0.800746 | 1.246991e-48 | -8.615850e-47 |
| Msa0179110 | Msa1365610 | 0.803168 | 3.964389e-49 | -8.615850e-47 |
| Msa0179110 | Msa1394380 | 0.807534 | 4.823360e-50 | -8.615850e-47 |
| Msa0179110 | Msa1408050 | 0.801971 | 7.001011e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179110 | MtrunA17_Chr1g0207561 | 96.813 | 251 | 7 | 1 | 1 | 251 | 1 | 250 | 2.88e-177 | 487 |
| Msa0179110 | MtrunA17_Chr2g0305161 | 58.333 | 48 | 20 | 0 | 199 | 246 | 140 | 187 | 7.01e-14 | 68.2 |
| Msa0179110 | MtrunA17_Chr1g0169651 | 36.986 | 73 | 43 | 1 | 174 | 246 | 659 | 728 | 1.28e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179110 | AT1G49850.1 | 41.860 | 258 | 128 | 4 | 1 | 246 | 1 | 248 | 1.30e-43 | 148 |
| Msa0179110 | AT2G15580.1 | 31.724 | 145 | 69 | 3 | 98 | 242 | 77 | 191 | 4.12e-15 | 72.0 |
| Msa0179110 | AT1G20823.1 | 40.659 | 91 | 45 | 3 | 164 | 247 | 70 | 158 | 8.42e-12 | 62.8 |
| Msa0179110 | AT1G76410.1 | 38.462 | 91 | 47 | 3 | 165 | 248 | 64 | 152 | 6.79e-11 | 60.1 |
Find 89 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGAGTCCAGGTGGCTTTC+TGG | 0.128770 | 1_4:+66517629 | None:intergenic |
| ACTCTGCTTGTTTGGATCCT+TGG | 0.223649 | 1_4:-66517458 | Msa0179110:CDS |
| GCCACTGGTTCTCTCCTTCA+TGG | 0.270330 | 1_4:+66517196 | None:intergenic |
| TAAATTTCACTCTGCTTGTT+TGG | 0.285473 | 1_4:-66517466 | Msa0179110:CDS |
| CTTTCACTTCCACTTGCTCT+TGG | 0.328518 | 1_4:+66519222 | None:intergenic |
| CTTCAAGATGCAAACAGTTC+AGG | 0.330884 | 1_4:+66517598 | None:intergenic |
| ACTCACTCAATTACAACAAC+AGG | 0.363261 | 1_4:+66517248 | None:intergenic |
| CGATATCATTTCGTCCTAAT+CGG | 0.375748 | 1_4:+66519750 | None:intergenic |
| GCATTGTTTCATTCTATTGA+AGG | 0.376853 | 1_4:+66517379 | None:intergenic |
| ATCAGAATCCAAGGTACTTC+AGG | 0.378655 | 1_4:-66517553 | Msa0179110:CDS |
| GGGAGCCTGTTGATAGAAAC+AGG | 0.405614 | 1_4:-66519146 | Msa0179110:intron |
| AGGATAAAATATATGATGTA+AGG | 0.408762 | 1_4:-66517171 | Msa0179110:three_prime_UTR |
| TGAAACCTGTTTCTATCAAC+AGG | 0.414171 | 1_4:+66519141 | None:intergenic |
| GCGATACACTGCGACTCTTT+CGG | 0.415466 | 1_4:+66519823 | None:intergenic |
| ATTTATGTCCACATTGCAAA+TGG | 0.420763 | 1_4:+66517484 | None:intergenic |
| ACAACAGGGTTGAAAATACT+TGG | 0.424615 | 1_4:+66517263 | None:intergenic |
| CGCGCAAGTCTCACATCTAC+TGG | 0.427263 | 1_4:+66519195 | None:intergenic |
| TACTGACTTGACTTCTCAAA+TGG | 0.434814 | 1_4:-66517679 | Msa0179110:CDS |
| GTTCCTCTCACACTTTCTCC+AGG | 0.437499 | 1_4:+66519246 | None:intergenic |
| CGGTGGTGATGATGGAAATC+TGG | 0.449253 | 1_4:+66519701 | None:intergenic |
| CGTGTATCGGAAAGATTTGA+TGG | 0.453526 | 1_4:-66519309 | Msa0179110:CDS |
| TGGTTTGTTCATGCAAGAGC+TGG | 0.460636 | 1_4:+66517649 | None:intergenic |
| CCAAGGTACTTCAGGATTGT+GGG | 0.469017 | 1_4:-66517545 | Msa0179110:CDS |
| CAAGGATGCTGCAACGGAGC+TGG | 0.470411 | 1_4:-66517318 | Msa0179110:three_prime_UTR |
| TTCAAGATGCAAACAGTTCA+GGG | 0.472566 | 1_4:+66517599 | None:intergenic |
| GACTCCTTCAGAGGTTGAGA+GGG | 0.475373 | 1_4:-66519167 | Msa0179110:CDS |
| AATGAAGGCGGCATTGAACC+TGG | 0.476697 | 1_4:-66519264 | Msa0179110:CDS |
| AAGGAGAGAACCAGTGGCAG+AGG | 0.476716 | 1_4:-66517191 | Msa0179110:three_prime_UTR |
| AGCAAGGCACGTATTGGCTC+CGG | 0.477346 | 1_4:+66517220 | None:intergenic |
| CCACTGGTTCTCTCCTTCAT+GGG | 0.481486 | 1_4:+66517197 | None:intergenic |
| CGTGAAGGCGGTGGTGATGA+TGG | 0.483202 | 1_4:+66519693 | None:intergenic |
| TCCAAGGTACTTCAGGATTG+TGG | 0.484189 | 1_4:-66517546 | Msa0179110:CDS |
| CATGGGAGCAAGGCACGTAT+TGG | 0.486115 | 1_4:+66517214 | None:intergenic |
| TCAGGATTGTGGGATATGCT+TGG | 0.490906 | 1_4:-66517535 | Msa0179110:CDS |
| CTTCAGAACTATTCCACATC+AGG | 0.492422 | 1_4:-66519778 | Msa0179110:CDS |
| AGGTTACGTGGTGACGGAGG+CGG | 0.496747 | 1_4:+66519621 | None:intergenic |
| GTAATTGAGTGAGTCGAAAC+CGG | 0.501618 | 1_4:-66517239 | Msa0179110:three_prime_UTR |
| GATATGCTTGGAATCTTTCG+TGG | 0.503539 | 1_4:-66517523 | Msa0179110:CDS |
| ACTATACATCTTCGACAGTA+AGG | 0.510903 | 1_4:+66517414 | None:intergenic |
| TGATAGAGATTCAGTGGATG+AGG | 0.517489 | 1_4:-66517751 | Msa0179110:CDS |
| TTCTCTCCTTCATGGGAGCA+AGG | 0.517548 | 1_4:+66517204 | None:intergenic |
| CCCACAATCCTGAAGTACCT+TGG | 0.517671 | 1_4:+66517545 | None:intergenic |
| CACATCAGGAGACACCGATT+AGG | 0.521300 | 1_4:-66519764 | Msa0179110:CDS |
| AGGGCCTCCTGAGTGAGTCC+AGG | 0.528158 | 1_4:+66517618 | None:intergenic |
| TGCTTGGAATCTTTCGTGGA+TGG | 0.531615 | 1_4:-66517519 | Msa0179110:CDS |
| GTAATTAAAGAGTCCTCAGT+TGG | 0.533031 | 1_4:+66517699 | None:intergenic |
| CGTCGGAGTCGTGAAGGCGG+TGG | 0.536072 | 1_4:+66519684 | None:intergenic |
| AGACTCCTTCAGAGGTTGAG+AGG | 0.543708 | 1_4:-66519168 | Msa0179110:CDS |
| GATCCTTGGATTCGCAGTTG+TGG | 0.545640 | 1_4:-66517444 | Msa0179110:CDS |
| CTAATCGGTGTCTCCTGATG+TGG | 0.556727 | 1_4:+66519765 | None:intergenic |
| GCTCCCCTCTCAACCTCTGA+AGG | 0.559895 | 1_4:+66519163 | None:intergenic |
| CGCGAGAAAGACTCCTTCAG+AGG | 0.559940 | 1_4:-66519176 | Msa0179110:CDS |
| AGAGGAACTCCAAGAGCAAG+TGG | 0.560537 | 1_4:-66519231 | Msa0179110:CDS |
| GGAGGCGGCGGACGTTGTAG+TGG | 0.563566 | 1_4:+66519636 | None:intergenic |
| AAAGCCACCTGGACTCACTC+AGG | 0.564054 | 1_4:-66517625 | Msa0179110:CDS |
| GGCGGACGTTGTAGTGGCGG+CGG | 0.567742 | 1_4:+66519642 | None:intergenic |
| GCCTCCTGAGTGAGTCCAGG+TGG | 0.570956 | 1_4:+66517621 | None:intergenic |
| CGTCGATCTCTAGTAAATGA+AGG | 0.571288 | 1_4:-66519279 | Msa0179110:CDS |
| GGCGGCGGACGTTGTAGTGG+CGG | 0.571784 | 1_4:+66519639 | None:intergenic |
| AATCTGGAGAAGGTGAAGAG+TGG | 0.578304 | 1_4:+66519717 | None:intergenic |
| TCTCCACAACTGCGAATCCA+AGG | 0.579205 | 1_4:+66517441 | None:intergenic |
| TTACGTGGTGACGGAGGCGG+CGG | 0.584713 | 1_4:+66519624 | None:intergenic |
| TACGTGCCTTGCTCCCATGA+AGG | 0.587476 | 1_4:-66517210 | Msa0179110:three_prime_UTR |
| GCAAAGTGATAGAGATTCAG+TGG | 0.589483 | 1_4:-66517757 | Msa0179110:CDS |
| CTGTGTCAAGGATGCTGCAA+CGG | 0.589797 | 1_4:-66517324 | Msa0179110:three_prime_UTR |
| GGATAAAATATATGATGTAA+GGG | 0.591614 | 1_4:-66517170 | Msa0179110:three_prime_UTR |
| CATCGTCGTCGGAGTCGTGA+AGG | 0.593058 | 1_4:+66519678 | None:intergenic |
| TATCGGAAAGATTTGATGGA+AGG | 0.593860 | 1_4:-66519305 | Msa0179110:CDS |
| GAACAAACCAGAAAGCCACC+TGG | 0.595800 | 1_4:-66517636 | Msa0179110:CDS |
| TGATACGGAATCAGAATCCA+AGG | 0.596863 | 1_4:-66517562 | Msa0179110:CDS |
| ACAGGAAGGTTACGTGGTGA+CGG | 0.598372 | 1_4:+66519615 | None:intergenic |
| ACTTGACTTCTCAAATGGCA+AGG | 0.603031 | 1_4:-66517674 | Msa0179110:CDS |
| TGTTTGTTAGGAGCGTGTAT+CGG | 0.603047 | 1_4:-66519322 | Msa0179110:intron |
| CAACAGGGTTGAAAATACTT+GGG | 0.617860 | 1_4:+66517264 | None:intergenic |
| AAAAGTCAATGTAACTTCCA+CGG | 0.625246 | 1_4:+66519867 | None:intergenic |
| CGTCGTCGGAGTCGTGAAGG+CGG | 0.629570 | 1_4:+66519681 | None:intergenic |
| TTGTAGTGGCGGCGGATACG+CGG | 0.630551 | 1_4:+66519650 | None:intergenic |
| ACGCGGAGAATCATCGTCGT+CGG | 0.635388 | 1_4:+66519667 | None:intergenic |
| GAACCTGGAGAAAGTGTGAG+AGG | 0.637792 | 1_4:-66519249 | Msa0179110:CDS |
| CCCATGAAGGAGAGAACCAG+TGG | 0.652765 | 1_4:-66517197 | Msa0179110:three_prime_UTR |
| CTCACTCAATTACAACAACA+GGG | 0.657280 | 1_4:+66517249 | None:intergenic |
| TACACTGCGACTCTTTCGGT+CGG | 0.658829 | 1_4:+66519827 | None:intergenic |
| AAACTGATCCATTTGCAATG+TGG | 0.665356 | 1_4:-66517492 | Msa0179110:CDS |
| TGATGATGGAAATCTGGAGA+AGG | 0.668735 | 1_4:+66519707 | None:intergenic |
| ATCAAGTGAAGTTCCAACTG+AGG | 0.674729 | 1_4:-66517712 | Msa0179110:CDS |
| GCCACCTGGACTCACTCAGG+AGG | 0.678388 | 1_4:-66517622 | Msa0179110:CDS |
| ACTCCTTCAGAGGTTGAGAG+GGG | 0.685216 | 1_4:-66519166 | Msa0179110:CDS |
| GGAAGGTTACGTGGTGACGG+AGG | 0.687887 | 1_4:+66519618 | None:intergenic |
| CGATCTCTAGTAAATGAAGG+CGG | 0.728434 | 1_4:-66519276 | Msa0179110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTTTATTACAATTC+TGG | - | chr1_4:66517479-66517498 | Msa0179110:CDS | 10.0% |
| !!! | AAGAAAATAGAAATAGTTTT+TGG | + | chr1_4:66517881-66517900 | None:intergenic | 15.0% |
| !!! | AAGCAAGAAATTATATTTTT+TGG | + | chr1_4:66518680-66518699 | None:intergenic | 15.0% |
| !!! | TTTTCTGATTTCTAATTATT+GGG | - | chr1_4:66518903-66518922 | Msa0179110:intron | 15.0% |
| !!! | ACAAGTTCTTTAAAAAAAAA+AGG | + | chr1_4:66518968-66518987 | None:intergenic | 15.0% |
| !!! | TAATGTATTTTGTGTTTGTT+AGG | - | chr1_4:66517642-66517661 | Msa0179110:CDS | 20.0% |
| !!! | TTGCTACTTATATAATTGTT+AGG | - | chr1_4:66517956-66517975 | Msa0179110:intron | 20.0% |
| !! | TACTTATATAATTGTTAGGT+TGG | - | chr1_4:66517960-66517979 | Msa0179110:intron | 20.0% |
| !! | ACTTATATAATTGTTAGGTT+GGG | - | chr1_4:66517961-66517980 | Msa0179110:intron | 20.0% |
| !!! | GACAATTTTAATTACAATCA+CGG | + | chr1_4:66518042-66518061 | None:intergenic | 20.0% |
| !! | TGTAATTAAAATTGTCTCTA+AGG | - | chr1_4:66518046-66518065 | Msa0179110:intron | 20.0% |
| !! | TACATTGATCTATATTTAAG+TGG | + | chr1_4:66518639-66518658 | None:intergenic | 20.0% |
| !!! | CAAGAAATTATATTTTTTGG+AGG | + | chr1_4:66518677-66518696 | None:intergenic | 20.0% |
| !! | AAAATATAATTTCTTGCTTG+TGG | - | chr1_4:66518681-66518700 | Msa0179110:intron | 20.0% |
| !!! | CTTTTCTGATTTCTAATTAT+TGG | - | chr1_4:66518902-66518921 | Msa0179110:intron | 20.0% |
| !! | TTTCTGATTTCTAATTATTG+GGG | - | chr1_4:66518904-66518923 | Msa0179110:intron | 20.0% |
| !! | TAAACTCAACAAAATTTGAA+GGG | + | chr1_4:66518935-66518954 | None:intergenic | 20.0% |
| !! | ATAAACTCAACAAAATTTGA+AGG | + | chr1_4:66518936-66518955 | None:intergenic | 20.0% |
| !! | AGGATAAAATATATGATGTA+AGG | - | chr1_4:66519805-66519824 | Msa0179110:exon | 20.0% |
| !! | GGATAAAATATATGATGTAA+GGG | - | chr1_4:66519806-66519825 | Msa0179110:exon | 20.0% |
| ! | TATGTGTAGGAAAATAAAAC+AGG | + | chr1_4:66517382-66517401 | None:intergenic | 25.0% |
| ! | AGTAGAAGATGATGAAAATA+GGG | + | chr1_4:66517424-66517443 | None:intergenic | 25.0% |
| ! | TATTCAAATTCATAATTGCC+AGG | - | chr1_4:66517447-66517466 | Msa0179110:CDS | 25.0% |
| !! | ACTAACTAGTCTAACTTAAA+TGG | - | chr1_4:66517596-66517615 | Msa0179110:CDS | 25.0% |
| ! | AGATTCTATTGAAAATTGCA+TGG | - | chr1_4:66518437-66518456 | Msa0179110:intron | 25.0% |
| ! | AGAGACATAATTGTAACATT+AGG | - | chr1_4:66518471-66518490 | Msa0179110:intron | 25.0% |
| ! | GATCGTGAAAGAAAAAAAAA+AGG | + | chr1_4:66518586-66518605 | None:intergenic | 25.0% |
| !!! | ATTAAGTTTTGGTCAGTATT+AGG | - | chr1_4:66518780-66518799 | Msa0179110:intron | 25.0% |
| !!! | TTAAGTTTTGGTCAGTATTA+GGG | - | chr1_4:66518781-66518800 | Msa0179110:intron | 25.0% |
| !! | CAAATTTTGTTGAGTTTATC+AGG | - | chr1_4:66518937-66518956 | Msa0179110:intron | 25.0% |
| ! | GAACAATCAACTTATGAAAA+AGG | + | chr1_4:66519059-66519078 | None:intergenic | 25.0% |
| !!! | TAAGTTGATTGTTCTGATTT+AGG | - | chr1_4:66519065-66519084 | Msa0179110:intron | 25.0% |
| !! | ATTTTCTTCTGCATCATTTT+TGG | - | chr1_4:66519116-66519135 | Msa0179110:intron | 25.0% |
| !!! | TTTTGGTTGTTTATTCTTGA+AGG | - | chr1_4:66519133-66519152 | Msa0179110:intron | 25.0% |
| TGTAGGAAAATAAAACAGGA+AGG | + | chr1_4:66517378-66517397 | None:intergenic | 30.0% | |
| TTGAACATATGTGTATGTGT+AGG | + | chr1_4:66517395-66517414 | None:intergenic | 30.0% | |
| CAGTAGAAGATGATGAAAAT+AGG | + | chr1_4:66517425-66517444 | None:intergenic | 30.0% | |
| AAATAATTACAGTCAGAACC+TGG | + | chr1_4:66517468-66517487 | None:intergenic | 30.0% | |
| ! | ATTTTACTCCTCGAAATTGT+AGG | - | chr1_4:66518128-66518147 | Msa0179110:intron | 30.0% |
| ! | TTTTACTCCTCGAAATTGTA+GGG | - | chr1_4:66518129-66518148 | Msa0179110:intron | 30.0% |
| TACAAATGAGTGAGTAACAA+GGG | + | chr1_4:66518238-66518257 | None:intergenic | 30.0% | |
| ATACAAATGAGTGAGTAACA+AGG | + | chr1_4:66518239-66518258 | None:intergenic | 30.0% | |
| TTTCCTTGTTGGTATTTCAT+TGG | - | chr1_4:66518274-66518293 | Msa0179110:intron | 30.0% | |
| ! | GCTTTTGATACTTCCATTTA+GGG | - | chr1_4:66518296-66518315 | Msa0179110:intron | 30.0% |
| TAACATTAGGTGATATTCTG+CGG | - | chr1_4:66518484-66518503 | Msa0179110:intron | 30.0% | |
| AATTTCTTGCTTGTGGAATT+TGG | - | chr1_4:66518688-66518707 | Msa0179110:intron | 30.0% | |
| ATTTCTTGCTTGTGGAATTT+GGG | - | chr1_4:66518689-66518708 | Msa0179110:intron | 30.0% | |
| CTTCATCTTATTAGAGCATA+TGG | - | chr1_4:66518755-66518774 | Msa0179110:intron | 30.0% | |
| ! | AGCATATGGAGATTAAGTTT+TGG | - | chr1_4:66518769-66518788 | Msa0179110:intron | 30.0% |
| ATTGTGCATATTTATTGCTC+TGG | - | chr1_4:66518810-66518829 | Msa0179110:intron | 30.0% | |
| !!! | ACTGGTCTTTTTTCATAGTT+CGG | - | chr1_4:66519032-66519051 | Msa0179110:intron | 30.0% |
| TTGATTGTTCTGATTTAGGA+AGG | - | chr1_4:66519069-66519088 | Msa0179110:intron | 30.0% | |
| AAAGCTTCAAACTGAATCAA+AGG | + | chr1_4:66519171-66519190 | None:intergenic | 30.0% | |
| !!! | TTGAAGCTTTACCTTTTTTG+TGG | - | chr1_4:66519181-66519200 | Msa0179110:CDS | 30.0% |
| !!! | TGAAGCTTTACCTTTTTTGT+GGG | - | chr1_4:66519182-66519201 | Msa0179110:CDS | 30.0% |
| !!! | AGTTTTTAGCAGCATTGATA+CGG | - | chr1_4:66519399-66519418 | Msa0179110:intron | 30.0% |
| ATTTATGTCCACATTGCAAA+TGG | + | chr1_4:66519495-66519514 | None:intergenic | 30.0% | |
| TAAATTTCACTCTGCTTGTT+TGG | - | chr1_4:66519510-66519529 | Msa0179110:intron | 30.0% | |
| GCATTGTTTCATTCTATTGA+AGG | + | chr1_4:66519600-66519619 | None:intergenic | 30.0% | |
| !!! | TTTATTTTGTGACTGTGTCA+AGG | - | chr1_4:66519640-66519659 | Msa0179110:CDS | 30.0% |
| ! | GTTTTGTATCTATCTATGAC+AGG | - | chr1_4:66519832-66519851 | Msa0179110:five_prime_UTR | 30.0% |
| CGATATCATTTCGTCCTAAT+CGG | + | chr1_4:66517229-66517248 | None:intergenic | 35.0% | |
| AATAAAACAGGAAGGTTACG+TGG | + | chr1_4:66517370-66517389 | None:intergenic | 35.0% | |
| TATCGGAAAGATTTGATGGA+AGG | - | chr1_4:66517671-66517690 | Msa0179110:CDS | 35.0% | |
| !! | TGAAACCTGTTTCTATCAAC+AGG | + | chr1_4:66517838-66517857 | None:intergenic | 35.0% |
| TTTACTCCTCGAAATTGTAG+GGG | - | chr1_4:66518130-66518149 | Msa0179110:intron | 35.0% | |
| GACATACAAACAGCAATTGA+CGG | + | chr1_4:66518182-66518201 | None:intergenic | 35.0% | |
| GTTACTCACTCATTTGTATG+TGG | - | chr1_4:66518240-66518259 | Msa0179110:intron | 35.0% | |
| AAGCCAATGAAATACCAACA+AGG | + | chr1_4:66518280-66518299 | None:intergenic | 35.0% | |
| ! | GGCTTTTGATACTTCCATTT+AGG | - | chr1_4:66518295-66518314 | Msa0179110:intron | 35.0% |
| ! | TTTCTGCGTTAGTGCAATTT+TGG | + | chr1_4:66518538-66518557 | None:intergenic | 35.0% |
| ! | AAAAGGATTAGCAACACTTC+TGG | + | chr1_4:66518569-66518588 | None:intergenic | 35.0% |
| TCTTTCACGATCTTGTATGT+TGG | - | chr1_4:66518594-66518613 | Msa0179110:intron | 35.0% | |
| !!! | TTTTTTGGAGGATTACGTCA+AGG | + | chr1_4:66518665-66518684 | None:intergenic | 35.0% |
| !! | AGAACTTGTCGATTTACTCA+AGG | - | chr1_4:66518979-66518998 | Msa0179110:intron | 35.0% |
| AGCTCTTCTAATAATCAGAC+TGG | - | chr1_4:66519014-66519033 | Msa0179110:intron | 35.0% | |
| AATTCAATGTCAGATGCACA+GGG | + | chr1_4:66519099-66519118 | None:intergenic | 35.0% | |
| AAATTCAATGTCAGATGCAC+AGG | + | chr1_4:66519100-66519119 | None:intergenic | 35.0% | |
| TCAAACTGAATCAAAGGCAA+TGG | + | chr1_4:66519165-66519184 | None:intergenic | 35.0% | |
| !!! | CTTTACCTTTTTTGTGGGAT+TGG | - | chr1_4:66519187-66519206 | Msa0179110:CDS | 35.0% |
| GTAATTAAAGAGTCCTCAGT+TGG | + | chr1_4:66519280-66519299 | None:intergenic | 35.0% | |
| !! | TACTGACTTGACTTCTCAAA+TGG | - | chr1_4:66519297-66519316 | Msa0179110:CDS | 35.0% |
| TTCAAGATGCAAACAGTTCA+GGG | + | chr1_4:66519380-66519399 | None:intergenic | 35.0% | |
| AAACTGATCCATTTGCAATG+TGG | - | chr1_4:66519484-66519503 | Msa0179110:intron | 35.0% | |
| ACTATACATCTTCGACAGTA+AGG | + | chr1_4:66519565-66519584 | None:intergenic | 35.0% | |
| CAACAGGGTTGAAAATACTT+GGG | + | chr1_4:66519715-66519734 | None:intergenic | 35.0% | |
| ACAACAGGGTTGAAAATACT+TGG | + | chr1_4:66519716-66519735 | None:intergenic | 35.0% | |
| CTCACTCAATTACAACAACA+GGG | + | chr1_4:66519730-66519749 | None:intergenic | 35.0% | |
| ACTCACTCAATTACAACAAC+AGG | + | chr1_4:66519731-66519750 | None:intergenic | 35.0% | |
| ! | TATATTTTATCCTCTGCCAC+TGG | + | chr1_4:66519798-66519817 | None:intergenic | 35.0% |
| CTTCAGAACTATTCCACATC+AGG | - | chr1_4:66517198-66517217 | Msa0179110:three_prime_UTR | 40.0% | |
| !! | TGATGATGGAAATCTGGAGA+AGG | + | chr1_4:66517272-66517291 | None:intergenic | 40.0% |
| ! | TGTTTGTTAGGAGCGTGTAT+CGG | - | chr1_4:66517654-66517673 | Msa0179110:CDS | 40.0% |
| CGTGTATCGGAAAGATTTGA+TGG | - | chr1_4:66517667-66517686 | Msa0179110:CDS | 40.0% | |
| CGTCGATCTCTAGTAAATGA+AGG | - | chr1_4:66517697-66517716 | Msa0179110:CDS | 40.0% | |
| CGATCTCTAGTAAATGAAGG+CGG | - | chr1_4:66517700-66517719 | Msa0179110:CDS | 40.0% | |
| TTTGTATGTCACTGAGTCAC+TGG | - | chr1_4:66518192-66518211 | Msa0179110:intron | 40.0% | |
| TTGACCAATTTCAACCGACA+AGG | - | chr1_4:66518382-66518401 | Msa0179110:intron | 40.0% | |
| TTCTCATGATGCATCCTTGT+CGG | + | chr1_4:66518399-66518418 | None:intergenic | 40.0% | |
| AATTGCACTAACGCAGAAAC+AGG | - | chr1_4:66518539-66518558 | Msa0179110:intron | 40.0% | |
| ATTCAATGTCAGATGCACAG+GGG | + | chr1_4:66519098-66519117 | None:intergenic | 40.0% | |
| GGAAACCAATCCCACAAAAA+AGG | + | chr1_4:66519195-66519214 | None:intergenic | 40.0% | |
| AATCTCTATCACTTTGCCTG+AGG | + | chr1_4:66519216-66519235 | None:intergenic | 40.0% | |
| GCAAAGTGATAGAGATTCAG+TGG | - | chr1_4:66519219-66519238 | Msa0179110:CDS | 40.0% | |
| TGATAGAGATTCAGTGGATG+AGG | - | chr1_4:66519225-66519244 | Msa0179110:CDS | 40.0% | |
| ATCAAGTGAAGTTCCAACTG+AGG | - | chr1_4:66519264-66519283 | Msa0179110:CDS | 40.0% | |
| ACTTGACTTCTCAAATGGCA+AGG | - | chr1_4:66519302-66519321 | Msa0179110:CDS | 40.0% | |
| CTTCAAGATGCAAACAGTTC+AGG | + | chr1_4:66519381-66519400 | None:intergenic | 40.0% | |
| TGATACGGAATCAGAATCCA+AGG | - | chr1_4:66519414-66519433 | Msa0179110:intron | 40.0% | |
| ! | ATCAGAATCCAAGGTACTTC+AGG | - | chr1_4:66519423-66519442 | Msa0179110:intron | 40.0% |
| GATATGCTTGGAATCTTTCG+TGG | - | chr1_4:66519453-66519472 | Msa0179110:intron | 40.0% | |
| ! | GCTGGCATTTTATAGTGATG+TGG | - | chr1_4:66519676-66519695 | Msa0179110:CDS | 40.0% |
| GTAATTGAGTGAGTCGAAAC+CGG | - | chr1_4:66519737-66519756 | Msa0179110:CDS | 40.0% | |
| AATCTGGAGAAGGTGAAGAG+TGG | + | chr1_4:66517262-66517281 | None:intergenic | 45.0% | |
| CTTTCACTTCCACTTGCTCT+TGG | + | chr1_4:66517757-66517776 | None:intergenic | 45.0% | |
| AGTGAGTAACAAGGGACCAA+GGG | + | chr1_4:66518230-66518249 | None:intergenic | 45.0% | |
| !! | ACAGCTGCTGATTTCCTTGT+TGG | - | chr1_4:66518263-66518282 | Msa0179110:intron | 45.0% |
| ! | GCATCCTTGTCGGTTGAAAT+TGG | + | chr1_4:66518389-66518408 | None:intergenic | 45.0% |
| TGAATCAAAGGCAATGGCAG+AGG | + | chr1_4:66519159-66519178 | None:intergenic | 45.0% | |
| !! | TTTGTGGGATTGGTTTCCTC+AGG | - | chr1_4:66519197-66519216 | Msa0179110:CDS | 45.0% |
| !! | TGGTTTGTTCATGCAAGAGC+TGG | + | chr1_4:66519330-66519349 | None:intergenic | 45.0% |
| ! | TCCAAGGTACTTCAGGATTG+TGG | - | chr1_4:66519430-66519449 | Msa0179110:intron | 45.0% |
| ! | CCAAGGTACTTCAGGATTGT+GGG | - | chr1_4:66519431-66519450 | Msa0179110:intron | 45.0% |
| TCAGGATTGTGGGATATGCT+TGG | - | chr1_4:66519441-66519460 | Msa0179110:intron | 45.0% | |
| TGCTTGGAATCTTTCGTGGA+TGG | - | chr1_4:66519457-66519476 | Msa0179110:intron | 45.0% | |
| ACTCTGCTTGTTTGGATCCT+TGG | - | chr1_4:66519518-66519537 | Msa0179110:intron | 45.0% | |
| TACACTGCGACTCTTTCGGT+CGG | + | chr1_4:66517152-66517171 | None:intergenic | 50.0% | |
| GCGATACACTGCGACTCTTT+CGG | + | chr1_4:66517156-66517175 | None:intergenic | 50.0% | |
| ! | CTAATCGGTGTCTCCTGATG+TGG | + | chr1_4:66517214-66517233 | None:intergenic | 50.0% |
| ! | CACATCAGGAGACACCGATT+AGG | - | chr1_4:66517212-66517231 | Msa0179110:three_prime_UTR | 50.0% |
| !! | CGGTGGTGATGATGGAAATC+TGG | + | chr1_4:66517278-66517297 | None:intergenic | 50.0% |
| ACAGGAAGGTTACGTGGTGA+CGG | + | chr1_4:66517364-66517383 | None:intergenic | 50.0% | |
| ! | AATGAAGGCGGCATTGAACC+TGG | - | chr1_4:66517712-66517731 | Msa0179110:CDS | 50.0% |
| ! | GAACCTGGAGAAAGTGTGAG+AGG | - | chr1_4:66517727-66517746 | Msa0179110:CDS | 50.0% |
| GTTCCTCTCACACTTTCTCC+AGG | + | chr1_4:66517733-66517752 | None:intergenic | 50.0% | |
| AGAGGAACTCCAAGAGCAAG+TGG | - | chr1_4:66517745-66517764 | Msa0179110:CDS | 50.0% | |
| AGACTCCTTCAGAGGTTGAG+AGG | - | chr1_4:66517808-66517827 | Msa0179110:intron | 50.0% | |
| GACTCCTTCAGAGGTTGAGA+GGG | - | chr1_4:66517809-66517828 | Msa0179110:intron | 50.0% | |
| ACTCCTTCAGAGGTTGAGAG+GGG | - | chr1_4:66517810-66517829 | Msa0179110:intron | 50.0% | |
| ! | GGGAGCCTGTTGATAGAAAC+AGG | - | chr1_4:66517830-66517849 | Msa0179110:intron | 50.0% |
| GAGTGAGTAACAAGGGACCA+AGG | + | chr1_4:66518231-66518250 | None:intergenic | 50.0% | |
| AGCACAGAGTGAGCCCTAAA+TGG | + | chr1_4:66518312-66518331 | None:intergenic | 50.0% | |
| TATGTTGGTCCACTGTGCTG+TGG | - | chr1_4:66518609-66518628 | Msa0179110:intron | 50.0% | |
| GAACAAACCAGAAAGCCACC+TGG | - | chr1_4:66519340-66519359 | Msa0179110:intron | 50.0% | |
| ! | CCCACAATCCTGAAGTACCT+TGG | + | chr1_4:66519434-66519453 | None:intergenic | 50.0% |
| GATCCTTGGATTCGCAGTTG+TGG | - | chr1_4:66519532-66519551 | Msa0179110:intron | 50.0% | |
| TCTCCACAACTGCGAATCCA+AGG | + | chr1_4:66519538-66519557 | None:intergenic | 50.0% | |
| CTGTGTCAAGGATGCTGCAA+CGG | - | chr1_4:66519652-66519671 | Msa0179110:CDS | 50.0% | |
| TTCTCTCCTTCATGGGAGCA+AGG | + | chr1_4:66519775-66519794 | None:intergenic | 50.0% | |
| !! | CCACTGGTTCTCTCCTTCAT+GGG | + | chr1_4:66519782-66519801 | None:intergenic | 50.0% |
| ACGCGGAGAATCATCGTCGT+CGG | + | chr1_4:66517312-66517331 | None:intergenic | 55.0% | |
| CGCGCAAGTCTCACATCTAC+TGG | + | chr1_4:66517784-66517803 | None:intergenic | 55.0% | |
| CGCGAGAAAGACTCCTTCAG+AGG | - | chr1_4:66517800-66517819 | Msa0179110:intron | 55.0% | |
| GCTCGACCCCTACAATTTCG+AGG | + | chr1_4:66518139-66518158 | None:intergenic | 55.0% | |
| CTGGCTGACACAGATTCCCT+TGG | - | chr1_4:66518211-66518230 | Msa0179110:intron | 55.0% | |
| AGTGGTTGTCCACAGCACAG+TGG | + | chr1_4:66518621-66518640 | None:intergenic | 55.0% | |
| AGTGAGTCCAGGTGGCTTTC+TGG | + | chr1_4:66519350-66519369 | None:intergenic | 55.0% | |
| AAAGCCACCTGGACTCACTC+AGG | - | chr1_4:66519351-66519370 | Msa0179110:intron | 55.0% | |
| !! | AGCAAGGCACGTATTGGCTC+CGG | + | chr1_4:66519759-66519778 | None:intergenic | 55.0% |
| CATGGGAGCAAGGCACGTAT+TGG | + | chr1_4:66519765-66519784 | None:intergenic | 55.0% | |
| TACGTGCCTTGCTCCCATGA+AGG | - | chr1_4:66519766-66519785 | Msa0179110:CDS | 55.0% | |
| CCCATGAAGGAGAGAACCAG+TGG | - | chr1_4:66519779-66519798 | Msa0179110:CDS | 55.0% | |
| !! | GCCACTGGTTCTCTCCTTCA+TGG | + | chr1_4:66519783-66519802 | None:intergenic | 55.0% |
| AAGGAGAGAACCAGTGGCAG+AGG | - | chr1_4:66519785-66519804 | Msa0179110:CDS | 55.0% | |
| ! | CGTGAAGGCGGTGGTGATGA+TGG | + | chr1_4:66517286-66517305 | None:intergenic | 60.0% |
| CATCGTCGTCGGAGTCGTGA+AGG | + | chr1_4:66517301-66517320 | None:intergenic | 60.0% | |
| TTGTAGTGGCGGCGGATACG+CGG | + | chr1_4:66517329-66517348 | None:intergenic | 60.0% | |
| !! | AGGTTACGTGGTGACGGAGG+CGG | + | chr1_4:66517358-66517377 | None:intergenic | 60.0% |
| !! | GGAAGGTTACGTGGTGACGG+AGG | + | chr1_4:66517361-66517380 | None:intergenic | 60.0% |
| GCTCCCCTCTCAACCTCTGA+AGG | + | chr1_4:66517816-66517835 | None:intergenic | 60.0% | |
| CAAGGATGCTGCAACGGAGC+TGG | - | chr1_4:66519658-66519677 | Msa0179110:CDS | 60.0% | |
| CGTCGTCGGAGTCGTGAAGG+CGG | + | chr1_4:66517298-66517317 | None:intergenic | 65.0% | |
| !! | TTACGTGGTGACGGAGGCGG+CGG | + | chr1_4:66517355-66517374 | None:intergenic | 65.0% |
| GCCACCTGGACTCACTCAGG+AGG | - | chr1_4:66519354-66519373 | Msa0179110:intron | 65.0% | |
| GCCTCCTGAGTGAGTCCAGG+TGG | + | chr1_4:66519358-66519377 | None:intergenic | 65.0% | |
| AGGGCCTCCTGAGTGAGTCC+AGG | + | chr1_4:66519361-66519380 | None:intergenic | 65.0% | |
| CGTCGGAGTCGTGAAGGCGG+TGG | + | chr1_4:66517295-66517314 | None:intergenic | 70.0% | |
| GGCGGACGTTGTAGTGGCGG+CGG | + | chr1_4:66517337-66517356 | None:intergenic | 70.0% | |
| GGCGGCGGACGTTGTAGTGG+CGG | + | chr1_4:66517340-66517359 | None:intergenic | 70.0% | |
| GGAGGCGGCGGACGTTGTAG+TGG | + | chr1_4:66517343-66517362 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 66517110 | 66519888 | 66517110 | ID=Msa0179110;Name=Msa0179110 |
| chr1_4 | mRNA | 66517110 | 66519888 | 66517110 | ID=Msa0179110-mRNA-1;Parent=Msa0179110;Name=Msa0179110-mRNA-1;_AED=0.27;_eAED=0.27;_QI=78|1|1|1|1|1|3|282|252 |
| chr1_4 | exon | 66517110 | 66517779 | 66517110 | ID=Msa0179110-mRNA-1:exon:21818;Parent=Msa0179110-mRNA-1 |
| chr1_4 | exon | 66519147 | 66519334 | 66519147 | ID=Msa0179110-mRNA-1:exon:21817;Parent=Msa0179110-mRNA-1 |
| chr1_4 | exon | 66519628 | 66519888 | 66519628 | ID=Msa0179110-mRNA-1:exon:21816;Parent=Msa0179110-mRNA-1 |
| chr1_4 | five_prime_UTR | 66519811 | 66519888 | 66519811 | ID=Msa0179110-mRNA-1:five_prime_utr;Parent=Msa0179110-mRNA-1 |
| chr1_4 | CDS | 66519628 | 66519810 | 66519628 | ID=Msa0179110-mRNA-1:cds;Parent=Msa0179110-mRNA-1 |
| chr1_4 | CDS | 66519147 | 66519334 | 66519147 | ID=Msa0179110-mRNA-1:cds;Parent=Msa0179110-mRNA-1 |
| chr1_4 | CDS | 66517392 | 66517779 | 66517392 | ID=Msa0179110-mRNA-1:cds;Parent=Msa0179110-mRNA-1 |
| chr1_4 | three_prime_UTR | 66517110 | 66517391 | 66517110 | ID=Msa0179110-mRNA-1:three_prime_utr;Parent=Msa0179110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
