AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030160 MtrunA17_Chr1g0187761 96.923 260 6 2 1 260 1 258 0.0 518
Msa0030160 MtrunA17_Chr1g0167691 67.910 268 65 9 1 260 1 255 1.61e-111 321
Msa0030160 MtrunA17_Chr1g0167661 62.642 265 83 5 1 260 1 254 2.67e-106 308
Msa0030160 MtrunA17_Chr7g0261281 45.070 284 126 6 1 260 1 278 8.32e-77 234
Msa0030160 MtrunA17_Chr7g0274581 46.429 252 87 5 1 252 1 204 2.90e-73 222
Msa0030160 MtrunA17_Chr1g0203411 64.430 149 53 0 1 149 1 149 2.88e-67 210
Msa0030160 MtrunA17_Chr4g0039971 69.925 133 37 1 1 133 2 131 8.91e-65 206
Msa0030160 MtrunA17_Chr3g0115821 72.881 118 32 0 1 118 1 118 1.56e-62 199
Msa0030160 MtrunA17_Chr8g0349261 63.087 149 51 3 1 145 1 149 5.39e-62 197
Msa0030160 MtrunA17_Chr2g0281071 73.504 117 30 1 1 116 1 117 2.53e-61 196
Msa0030160 MtrunA17_Chr4g0048511 74.359 117 29 1 1 116 1 117 2.54e-61 197
Msa0030160 MtrunA17_Chr7g0275911 48.341 211 80 4 1 187 1 206 3.06e-61 193
Msa0030160 MtrunA17_Chr8g0346561 69.106 123 37 1 1 123 1 122 3.54e-61 195
Msa0030160 MtrunA17_Chr4g0068061 73.276 116 31 0 1 116 1 116 1.12e-60 194
Msa0030160 MtrunA17_Chr7g0217741 65.909 132 42 1 1 132 1 129 1.72e-60 193
Msa0030160 MtrunA17_Chr4g0042671 60.667 150 56 1 1 150 1 147 2.12e-60 196
Msa0030160 MtrunA17_Chr2g0323351 45.495 222 93 3 1 197 1 219 5.14e-60 190
Msa0030160 MtrunA17_Chr5g0395281 72.881 118 32 0 1 118 1 118 6.24e-60 192
Msa0030160 MtrunA17_Chr6g0453471 58.333 156 56 2 1 156 1 147 7.74e-60 193
Msa0030160 MtrunA17_Chr2g0323411 72.414 116 32 0 1 116 1 116 9.26e-60 192
Msa0030160 MtrunA17_Chr4g0037141 53.333 180 77 2 1 173 1 180 1.11e-59 190
Msa0030160 MtrunA17_Chr3g0092401 63.504 137 47 1 1 134 2 138 1.19e-59 191
Msa0030160 MtrunA17_Chr4g0022891 48.000 225 99 5 1 207 1 225 3.13e-59 188
Msa0030160 MtrunA17_Chr4g0060721 64.567 127 45 0 1 127 2 128 1.24e-58 189
Msa0030160 MtrunA17_Chr3g0121241 69.643 112 34 0 5 116 35 146 1.45e-57 186
Msa0030160 MtrunA17_Chr2g0311221 73.554 121 32 0 3 123 5 125 1.49e-57 186
Msa0030160 MtrunA17_Chr5g0410961 70.690 116 34 0 1 116 1 116 1.96e-57 186
Msa0030160 MtrunA17_Chr3g0131121 60.417 144 49 1 1 144 1 136 7.14e-57 184
Msa0030160 MtrunA17_Chr7g0217221 62.791 129 48 0 1 129 1 129 8.54e-57 182
Msa0030160 MtrunA17_Chr8g0385321 70.690 116 34 0 1 116 1 116 1.05e-56 184
Msa0030160 MtrunA17_Chr4g0070611 68.103 116 37 0 1 116 1 116 2.26e-56 182
Msa0030160 MtrunA17_Chr1g0193371 54.268 164 72 1 1 164 1 161 2.94e-56 184
Msa0030160 MtrunA17_Chr4g0070641 50.888 169 76 2 1 162 1 169 3.53e-56 177
Msa0030160 MtrunA17_Chr7g0228891 48.404 188 97 0 1 188 1 188 5.01e-56 181
Msa0030160 MtrunA17_Chr1g0194951 68.966 116 36 0 1 116 1 116 6.07e-56 183
Msa0030160 MtrunA17_Chr7g0254411 54.268 164 65 1 1 164 1 154 9.67e-56 182
Msa0030160 MtrunA17_Chr4g0022931 40.221 271 114 9 1 224 1 270 1.32e-55 179
Msa0030160 MtrunA17_Chr4g0022901 47.783 203 84 5 1 190 1 194 2.15e-55 179
Msa0030160 MtrunA17_Chr6g0453211 69.369 111 34 0 1 111 1 111 9.22e-55 179
Msa0030160 MtrunA17_Chr4g0022911 46.429 196 99 3 1 190 1 196 1.51e-54 177
Msa0030160 MtrunA17_Chr3g0110351 43.231 229 116 4 1 225 1 219 2.32e-54 177
Msa0030160 MtrunA17_Chr4g0022881 59.091 132 53 1 1 132 1 131 9.19e-54 173
Msa0030160 MtrunA17_Chr1g0151941 66.667 117 38 1 1 116 1 117 3.36e-53 172
Msa0030160 MtrunA17_Chr7g0270891 67.797 118 38 0 1 118 1 118 3.84e-53 176
Msa0030160 MtrunA17_Chr4g0057031 66.379 116 39 0 1 116 1 116 4.21e-53 173
Msa0030160 MtrunA17_Chr5g0434571 66.102 118 40 0 1 118 37 154 4.55e-53 176
Msa0030160 MtrunA17_Chr3g0103281 66.379 116 39 0 1 116 1 116 5.79e-53 174
Msa0030160 MtrunA17_Chr7g0269831 69.828 116 35 0 1 116 1 116 1.88e-52 174
Msa0030160 MtrunA17_Chr5g0435101 62.609 115 43 0 2 116 1 115 3.11e-52 169
Msa0030160 MtrunA17_Chr1g0193801 66.102 118 40 0 1 118 1 118 3.18e-52 174
Msa0030160 MtrunA17_Chr7g0271241 69.725 109 33 0 1 109 1 109 5.75e-52 173
Msa0030160 MtrunA17_Chr1g0152011 52.795 161 69 2 1 160 1 155 2.55e-51 171
Msa0030160 MtrunA17_Chr4g0058631 52.500 160 75 1 1 159 1 160 8.79e-51 170
Msa0030160 MtrunA17_Chr6g0487491 55.556 153 59 2 1 144 1 153 1.02e-50 167
Msa0030160 MtrunA17_Chr3g0135311 53.947 152 68 2 1 151 1 151 3.21e-50 168
Msa0030160 MtrunA17_Chr4g0028311 65.812 117 39 1 1 116 1 117 4.64e-50 167
Msa0030160 MtrunA17_Chr2g0309911 64.865 111 39 0 6 116 5 115 7.82e-50 166
Msa0030160 MtrunA17_Chr2g0330041 63.793 116 42 0 1 116 1 116 1.70e-49 167
Msa0030160 MtrunA17_Chr5g0400821 58.273 139 54 3 1 135 1 139 1.81e-49 165
Msa0030160 MtrunA17_Chr3g0117091 66.379 116 39 0 1 116 1 116 2.82e-49 166
Msa0030160 MtrunA17_Chr8g0342541 62.069 116 44 0 1 116 1 116 5.17e-49 165
Msa0030160 MtrunA17_Chr1g0211161 64.912 114 40 0 3 116 4 117 1.38e-48 160
Msa0030160 MtrunA17_Chr6g0452271 62.069 116 44 0 1 116 1 116 1.53e-48 163
Msa0030160 MtrunA17_Chr8g0342521 62.069 116 44 0 1 116 1 116 1.80e-48 163
Msa0030160 MtrunA17_Chr4g0044421 61.207 116 44 1 2 116 1 116 6.70e-48 157
Msa0030160 MtrunA17_Chr8g0387421 62.069 116 44 0 1 116 1 116 1.02e-47 160
Msa0030160 MtrunA17_Chr7g0264641 59.504 121 48 1 1 120 1 121 1.59e-47 159
Msa0030160 MtrunA17_Chr5g0417821 64.486 107 38 0 10 116 5 111 1.77e-47 159
Msa0030160 MtrunA17_Chr4g0054391 44.385 187 96 3 1 179 1 187 1.95e-47 159
Msa0030160 MtrunA17_Chr2g0327351 63.964 111 39 1 1 110 1 111 4.35e-47 159
Msa0030160 MtrunA17_Chr7g0240821 47.727 176 79 5 17 183 6 177 6.26e-46 153
Msa0030160 MtrunA17_Chr1g0209661 59.836 122 48 1 12 132 27 148 1.19e-45 155
Msa0030160 MtrunA17_Chr5g0397231 63.636 110 40 0 1 110 1 110 1.30e-45 155
Msa0030160 MtrunA17_Chr1g0203441 65.385 104 36 0 13 116 14 117 1.53e-45 154
Msa0030160 MtrunA17_Chr6g0470971 53.901 141 58 2 4 143 6 140 2.31e-45 153
Msa0030160 MtrunA17_Chr4g0072751 63.964 111 39 1 1 110 1 111 2.67e-45 155
Msa0030160 MtrunA17_Chr2g0328771 61.607 112 43 0 12 123 20 131 9.04e-45 153
Msa0030160 MtrunA17_Chr4g0032401 64.762 105 37 0 12 116 17 121 1.45e-44 153
Msa0030160 MtrunA17_Chr8g0342481 59.829 117 46 1 1 116 1 117 2.78e-44 154
Msa0030160 MtrunA17_Chr7g0228231 58.621 116 47 1 12 126 14 129 4.43e-44 148
Msa0030160 MtrunA17_Chr8g0343831 57.627 118 46 1 1 118 1 114 1.04e-43 148
Msa0030160 MtrunA17_Chr4g0055981 61.682 107 41 0 9 115 52 158 1.29e-43 147
Msa0030160 MtrunA17_Chr6g0450101 55.738 122 52 1 1 120 1 122 1.51e-43 146
Msa0030160 MtrunA17_Chr5g0434911 55.455 110 49 0 7 116 16 125 2.72e-43 148
Msa0030160 MtrunA17_Chr1g0186061 61.165 103 40 0 13 115 21 123 4.34e-43 147
Msa0030160 MtrunA17_Chr8g0354661 61.538 104 40 0 12 115 37 140 5.77e-43 153
Msa0030160 MtrunA17_Chr5g0434931 57.547 106 45 0 11 116 34 139 6.15e-43 147
Msa0030160 MtrunA17_Chr1g0154031 60.577 104 41 0 12 115 76 179 1.34e-42 149
Msa0030160 MtrunA17_Chr1g0168661 61.165 103 40 0 13 115 22 124 2.34e-42 145
Msa0030160 MtrunA17_Chr2g0294811 68.478 92 29 0 1 92 1 92 2.86e-42 140
Msa0030160 MtrunA17_Chr3g0088461 63.889 108 39 0 9 116 19 126 3.11e-42 147
Msa0030160 MtrunA17_Chr5g0434831 58.491 106 44 0 11 116 6 111 3.34e-42 142
Msa0030160 MtrunA17_Chr3g0099131 58.879 107 44 0 12 118 41 147 9.80e-42 149
Msa0030160 MtrunA17_Chr3g0080861 60.577 104 41 0 12 115 37 140 1.41e-41 149
Msa0030160 MtrunA17_Chr1g0194291 60.185 108 43 0 11 118 20 127 1.87e-41 143
Msa0030160 MtrunA17_Chr7g0220341 52.941 119 54 1 10 126 23 141 5.20e-41 142
Msa0030160 MtrunA17_Chr1g0194301 54.955 111 50 0 8 118 29 139 5.49e-41 142
Msa0030160 MtrunA17_Chr2g0322521 59.813 107 43 0 9 115 26 132 7.69e-41 144
Msa0030160 MtrunA17_Chr4g0042611 67.045 88 29 0 1 88 1 88 1.16e-40 135
Msa0030160 MtrunA17_Chr7g0228991 55.660 106 47 0 11 116 28 133 1.63e-39 138
Msa0030160 MtrunA17_Chr5g0434841 55.660 106 47 0 11 116 19 124 2.59e-39 139
Msa0030160 MtrunA17_Chr1g0180391 47.619 147 74 1 12 158 19 162 2.73e-39 136
Msa0030160 MtrunA17_Chr4g0068921 59.633 109 44 0 10 118 22 130 1.14e-38 134
Msa0030160 MtrunA17_Chr8g0360111 54.902 102 46 0 11 112 24 125 1.42e-38 135
Msa0030160 MtrunA17_Chr7g0247131 78.378 74 16 0 43 116 9 82 2.34e-38 135
Msa0030160 MtrunA17_Chr2g0293911 57.658 111 47 0 8 118 20 130 3.13e-38 136
Msa0030160 MtrunA17_Chr2g0323321 63.043 92 33 1 1 92 1 91 6.76e-38 129
Msa0030160 MtrunA17_Chr1g0192411 53.774 106 49 0 10 115 10 115 3.78e-37 135
Msa0030160 MtrunA17_Chr2g0327821 42.169 166 90 2 12 175 6 167 2.07e-36 129
Msa0030160 MtrunA17_Chr5g0395221 65.909 88 30 0 1 88 1 88 4.17e-36 123
Msa0030160 MtrunA17_Chr5g0441141 33.878 245 135 6 13 243 13 244 5.17e-36 129
Msa0030160 MtrunA17_Chr5g0440761 33.878 245 135 6 13 243 13 244 1.11e-35 128
Msa0030160 MtrunA17_Chr8g0342531 61.798 89 34 0 1 89 1 89 1.85e-35 124
Msa0030160 MtrunA17_Chr5g0440781 52.427 103 48 1 13 114 13 115 2.91e-35 124
Msa0030160 MtrunA17_Chr8g0342511 62.069 87 33 0 1 87 1 87 8.54e-35 120
Msa0030160 MtrunA17_Chr4g0030881 51.327 113 48 1 13 118 8 120 1.21e-34 125
Msa0030160 MtrunA17_Chr5g0441131 51.456 103 49 1 13 114 10 112 6.23e-33 118
Msa0030160 MtrunA17_Chr8g0342461 60.000 90 35 1 1 89 1 90 5.69e-32 114
Msa0030160 MtrunA17_Chr3g0099141 57.831 83 35 0 12 94 40 122 1.50e-31 113
Msa0030160 MtrunA17_Chr8g0342471 60.000 90 35 1 1 89 1 90 1.99e-31 113
Msa0030160 MtrunA17_Chr8g0334881 49.038 104 52 1 12 114 10 113 2.74e-31 117
Msa0030160 MtrunA17_Chr4g0013361 47.222 108 56 1 8 114 6 113 6.51e-30 113
Msa0030160 MtrunA17_Chr6g0454921 53.398 103 45 2 14 115 15 115 7.18e-30 111
Msa0030160 MtrunA17_Chr5g0401731 40.491 163 85 4 8 164 9 165 2.79e-29 112
Msa0030160 MtrunA17_Chr3g0133601 46.552 116 59 2 9 123 32 145 1.01e-28 108
Msa0030160 MtrunA17_Chr4g0008551 35.912 181 107 4 14 192 38 211 1.74e-28 110
Msa0030160 MtrunA17_Chr4g0042501 39.850 133 77 2 14 145 105 235 1.03e-27 110
Msa0030160 MtrunA17_Chr7g0229101 61.972 71 27 0 43 113 3 73 2.81e-27 104
Msa0030160 MtrunA17_Chr4g0053431 49.057 106 45 2 14 115 5 105 3.78e-27 105
Msa0030160 MtrunA17_Chr5g0425591 52.439 82 38 1 13 93 10 91 6.32e-27 100
Msa0030160 MtrunA17_Chr5g0417621 39.456 147 85 3 14 159 134 277 1.05e-26 107
Msa0030160 MtrunA17_Chr6g0480581 50.000 102 48 2 14 114 4 103 2.41e-26 103
Msa0030160 MtrunA17_Chr5g0434901 63.636 66 24 0 48 113 9 74 4.29e-26 99.0
Msa0030160 MtrunA17_Chr7g0229131 56.757 74 32 0 43 116 3 76 6.47e-26 100
Msa0030160 MtrunA17_Chr7g0238631 38.509 161 88 3 12 163 111 269 7.57e-26 105
Msa0030160 MtrunA17_Chr3g0139671 46.729 107 54 2 12 117 83 187 4.71e-25 103
Msa0030160 MtrunA17_Chr3g0139671 34.259 108 65 3 14 118 33 137 1.59e-13 70.1
Msa0030160 MtrunA17_Chr1g0157731 44.860 107 56 2 12 117 89 193 1.51e-24 102
Msa0030160 MtrunA17_Chr1g0157731 34.259 108 65 3 14 118 39 143 3.32e-13 69.3
Msa0030160 MtrunA17_Chr5g0429661 39.610 154 81 4 12 155 120 271 6.71e-24 98.6
Msa0030160 MtrunA17_Chr3g0117511 29.365 252 137 7 8 224 177 422 7.70e-24 99.8
Msa0030160 MtrunA17_Chr4g0058991 39.831 118 68 2 8 124 203 318 9.05e-24 99.4
Msa0030160 MtrunA17_Chr6g0453751 50.000 92 37 2 11 93 19 110 1.29e-23 92.8
Msa0030160 MtrunA17_Chr3g0125801 45.614 114 59 2 14 126 16 127 2.79e-23 95.9
Msa0030160 MtrunA17_Chr3g0093811 56.579 76 33 0 43 118 13 88 3.14e-22 92.8
Msa0030160 MtrunA17_Chr7g0254261 38.621 145 83 3 14 157 89 228 6.53e-22 93.2
Msa0030160 MtrunA17_Chr6g0460661 45.263 95 49 2 17 110 19 111 2.30e-21 87.8
Msa0030160 MtrunA17_Chr5g0437321 45.000 100 52 2 14 112 19 116 4.27e-21 90.1
Msa0030160 MtrunA17_Chr6g0460671 37.671 146 84 4 14 154 99 242 5.47e-21 90.5
Msa0030160 MtrunA17_Chr7g0228531 40.517 116 63 3 10 121 216 329 5.11e-20 88.6
Msa0030160 MtrunA17_Chr7g0228401 42.157 102 55 3 25 125 290 388 2.06e-19 87.0
Msa0030160 MtrunA17_Chr5g0397841 44.444 99 52 2 12 109 108 204 6.17e-19 85.9
Msa0030160 MtrunA17_Chr1g0193901 58.621 58 23 1 12 68 11 68 2.24e-18 78.6
Msa0030160 MtrunA17_Chr1g0193891 58.621 58 23 1 12 68 11 68 2.24e-18 78.6
Msa0030160 MtrunA17_Chr1g0193871 58.621 58 23 1 12 68 11 68 2.24e-18 78.6
Msa0030160 MtrunA17_Chr1g0193881 58.621 58 23 1 12 68 11 68 2.24e-18 78.6
Msa0030160 MtrunA17_Chr7g0238651 36.207 116 72 1 14 127 7 122 2.30e-18 83.2
Msa0030160 MtrunA17_Chr1g0177901 42.708 96 53 2 24 119 4 97 2.43e-18 80.9
Msa0030160 MtrunA17_Chr7g0228481 37.069 116 67 3 10 121 216 329 6.90e-17 79.7
Msa0030160 MtrunA17_Chr7g0247141 62.500 48 17 1 1 47 1 48 1.25e-16 72.4
Msa0030160 MtrunA17_Chr7g0233061 34.074 135 79 4 14 145 180 307 5.29e-16 76.6
Msa0030160 MtrunA17_Chr8g0362231 36.283 113 68 3 17 127 25 135 9.97e-16 76.3
Msa0030160 MtrunA17_Chr5g0416341 39.394 99 59 1 17 115 29 126 1.41e-15 75.9
Msa0030160 MtrunA17_Chr5g0434871 65.116 43 15 0 74 116 2 44 1.70e-15 69.3
Msa0030160 MtrunA17_Chr5g0421201 32.468 154 67 5 70 186 15 168 7.12e-11 59.7
Msa0030160 MtrunA17_Chr5g0434891 63.158 38 14 0 78 115 2 39 7.90e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030160 AT2G31180.1 51.880 266 105 6 1 260 1 249 4.00e-82 247
Msa0030160 AT3G23250.1 49.141 291 104 8 1 257 1 281 5.53e-81 245
Msa0030160 AT1G06180.1 60.396 202 65 4 1 197 1 192 3.33e-79 239
Msa0030160 AT4G21440.1 75.862 116 28 0 1 116 1 116 1.30e-64 205
Msa0030160 AT3G61250.1 74.138 116 30 0 1 116 1 116 1.84e-64 203
Msa0030160 AT1G79180.1 76.923 117 27 0 3 119 5 121 2.71e-64 203
Msa0030160 AT1G16490.1 61.146 157 60 1 3 158 5 161 4.28e-64 202
Msa0030160 AT5G16770.4 73.729 118 31 0 1 118 1 118 6.25e-63 200
Msa0030160 AT5G16770.3 73.729 118 31 0 1 118 1 118 6.25e-63 200
Msa0030160 AT5G16770.1 73.729 118 31 0 1 118 1 118 1.61e-62 199
Msa0030160 AT5G16770.2 73.729 118 31 0 1 118 1 118 1.61e-62 199
Msa0030160 AT3G02940.2 72.034 118 33 0 1 118 1 118 7.64e-62 197
Msa0030160 AT1G56160.1 74.561 114 29 0 3 116 5 118 1.22e-61 196
Msa0030160 AT3G02940.1 72.034 118 33 0 1 118 1 118 1.36e-61 197
Msa0030160 AT3G02940.3 72.034 118 33 0 1 118 1 118 1.36e-61 197
Msa0030160 AT5G49330.1 63.194 144 50 1 1 141 1 144 1.14e-60 195
Msa0030160 AT4G28110.1 70.690 116 34 0 1 116 1 116 2.61e-60 192
Msa0030160 AT3G01140.2 71.552 116 33 0 1 116 1 116 1.03e-59 192
Msa0030160 AT5G15310.1 65.152 132 43 1 1 132 1 129 1.35e-59 192
Msa0030160 AT5G15310.2 65.152 132 43 1 1 132 1 129 1.48e-59 191
Msa0030160 AT3G13540.1 70.796 113 33 0 4 116 15 127 1.60e-59 189
Msa0030160 AT5G15310.4 65.152 132 43 1 1 132 1 129 1.65e-59 189
Msa0030160 AT1G34670.1 72.034 118 33 0 1 118 1 118 1.71e-59 192
Msa0030160 AT4G05100.1 71.795 117 32 1 1 116 1 117 1.90e-59 191
Msa0030160 AT2G16720.1 71.552 116 33 0 1 116 1 116 2.01e-59 189
Msa0030160 AT3G28910.1 65.354 127 44 0 1 127 1 127 3.28e-59 191
Msa0030160 AT3G12820.1 73.684 114 30 0 3 116 5 118 4.08e-59 188
Msa0030160 AT4G38620.1 57.576 165 65 2 1 164 1 161 6.76e-59 189
Msa0030160 AT5G10280.1 69.492 118 36 0 1 118 1 118 1.30e-58 189
Msa0030160 AT3G01140.1 70.690 116 34 0 1 116 44 159 1.42e-58 191
Msa0030160 AT1G22640.1 68.966 116 36 0 1 116 1 116 3.40e-58 186
Msa0030160 AT2G47460.1 61.074 149 49 2 1 149 1 140 3.89e-58 189
Msa0030160 AT4G09460.1 68.966 116 36 0 1 116 1 116 5.91e-58 185
Msa0030160 AT1G08810.1 65.079 126 44 0 1 126 1 126 7.10e-58 186
Msa0030160 AT1G35515.1 68.103 116 37 0 1 116 1 116 1.24e-57 183
Msa0030160 AT1G79180.2 60.000 150 27 1 3 119 5 154 1.77e-57 186
Msa0030160 AT5G65230.1 70.339 118 35 0 1 118 1 118 3.37e-57 185
Msa0030160 AT5G62470.2 67.500 120 39 0 1 120 1 120 4.53e-57 186
Msa0030160 AT1G57560.1 48.780 205 91 4 1 194 1 202 1.04e-56 184
Msa0030160 AT4G17785.2 66.387 119 39 1 1 118 1 119 2.39e-56 184
Msa0030160 AT4G17785.1 66.387 119 39 1 1 118 1 119 2.87e-56 184
Msa0030160 AT1G57560.2 55.215 163 70 1 1 163 1 160 2.94e-56 182
Msa0030160 AT5G16600.1 68.966 116 36 0 1 116 1 116 4.27e-56 183
Msa0030160 AT3G47600.1 66.667 120 40 0 1 120 1 120 5.01e-56 183
Msa0030160 AT1G74650.1 69.828 116 35 0 1 116 1 116 5.15e-56 182
Msa0030160 AT5G62470.1 67.500 120 38 1 1 120 1 119 1.27e-55 182
Msa0030160 AT3G62610.1 69.231 117 36 0 1 117 1 117 1.71e-55 182
Msa0030160 AT4G34990.1 60.563 142 55 1 1 141 1 142 3.04e-55 179
Msa0030160 AT4G22680.1 66.379 116 39 0 1 116 1 116 9.75e-55 177
Msa0030160 AT4G12350.1 67.241 116 38 0 1 116 1 116 1.38e-54 177
Msa0030160 AT5G60890.1 64.407 118 42 0 1 118 1 118 1.48e-54 178
Msa0030160 AT1G18570.1 67.521 117 37 1 1 116 1 117 3.22e-54 179
Msa0030160 AT1G74080.1 66.379 116 39 0 1 116 1 116 4.66e-54 178
Msa0030160 AT5G14340.1 66.379 116 39 0 1 116 13 128 4.15e-53 174
Msa0030160 AT1G66230.1 65.254 118 41 0 1 118 1 118 4.34e-53 174
Msa0030160 AT1G09540.1 66.102 118 40 0 1 118 1 118 5.12e-53 176
Msa0030160 AT5G26660.1 68.103 116 37 0 1 116 1 116 7.27e-53 175
Msa0030160 AT4G01680.3 68.103 116 37 0 1 116 1 116 1.50e-52 171
Msa0030160 AT5G54230.1 47.368 209 101 4 12 220 12 211 1.78e-52 173
Msa0030160 AT4G01680.1 68.103 116 37 0 1 116 1 116 8.58e-52 172
Msa0030160 AT4G37780.1 64.103 117 41 1 1 116 1 117 1.62e-51 170
Msa0030160 AT5G07690.1 65.517 116 40 0 1 116 1 116 3.17e-51 171
Msa0030160 AT5G61420.2 64.655 116 41 0 1 116 1 116 3.68e-51 171
Msa0030160 AT5G56110.1 66.379 116 39 0 1 116 1 116 5.83e-51 169
Msa0030160 AT3G12720.1 64.865 111 39 0 6 116 16 126 1.40e-49 166
Msa0030160 AT5G62320.1 43.478 184 92 3 3 174 4 187 2.43e-49 163
Msa0030160 AT3G13890.2 62.931 116 43 0 1 116 1 116 7.24e-49 165
Msa0030160 AT5G07700.1 62.931 116 43 0 1 116 1 116 1.05e-48 164
Msa0030160 AT5G07700.2 62.931 116 43 0 1 116 1 116 1.05e-48 164
Msa0030160 AT3G49690.1 64.957 117 40 1 1 116 1 117 1.69e-48 162
Msa0030160 AT4G01680.2 61.719 128 37 1 1 116 1 128 2.33e-48 163
Msa0030160 AT5G57620.1 64.103 117 41 1 1 116 1 117 4.77e-48 162
Msa0030160 AT5G23000.1 63.248 117 42 1 1 116 1 117 5.08e-48 162
Msa0030160 AT5G14750.1 59.292 113 46 0 13 125 17 129 7.58e-48 158
Msa0030160 AT5G35550.1 50.980 153 69 1 12 164 14 160 1.53e-47 159
Msa0030160 AT5G65790.1 63.248 117 42 1 1 116 1 117 2.00e-47 162
Msa0030160 AT2G36890.1 64.167 120 42 1 1 119 1 120 2.10e-47 159
Msa0030160 AT2G36890.2 64.167 120 42 1 1 119 42 161 3.21e-47 160
Msa0030160 AT5G40330.1 43.558 163 80 1 13 175 13 163 7.93e-47 155
Msa0030160 AT1G63910.1 62.069 116 44 0 1 116 1 116 8.00e-47 160
Msa0030160 AT1G74430.1 65.094 106 37 0 11 116 11 116 5.14e-46 155
Msa0030160 AT3G13890.1 58.400 125 43 1 1 116 1 125 8.33e-46 157
Msa0030160 AT2G32460.1 62.037 108 41 0 8 115 14 121 4.00e-45 158
Msa0030160 AT3G27810.1 54.198 131 60 0 12 142 20 150 4.08e-45 151
Msa0030160 AT2G32460.2 62.857 105 39 0 11 115 5 109 7.56e-45 157
Msa0030160 AT3G27920.1 57.798 109 46 0 8 116 10 118 1.61e-44 150
Msa0030160 AT3G28470.1 48.485 165 67 3 1 149 1 163 1.71e-44 152
Msa0030160 AT1G18710.1 61.111 108 42 0 11 118 11 118 1.93e-44 151
Msa0030160 AT3G24310.1 59.504 121 46 2 11 128 17 137 2.50e-44 150
Msa0030160 AT1G68320.1 53.191 141 58 2 12 144 19 159 3.38e-44 151
Msa0030160 AT5G55020.1 61.682 107 41 0 12 118 26 132 5.54e-44 155
Msa0030160 AT3G30210.1 39.604 202 108 3 11 198 26 227 6.99e-44 150
Msa0030160 AT3G01530.1 47.097 155 78 2 8 162 21 171 1.07e-43 147
Msa0030160 AT5G52600.1 55.085 118 53 0 12 129 12 129 1.92e-43 146
Msa0030160 AT5G40350.1 60.952 105 41 0 12 116 17 121 2.88e-43 146
Msa0030160 AT5G06100.1 60.000 105 42 0 11 115 31 135 2.98e-43 152
Msa0030160 AT4G13480.1 59.292 113 46 0 13 125 7 119 3.35e-43 147
Msa0030160 AT5G06100.5 60.000 105 42 0 11 115 31 135 1.20e-42 152
Msa0030160 AT5G06100.2 60.000 105 42 0 11 115 31 135 1.20e-42 152
Msa0030160 AT5G06100.3 60.000 105 42 0 11 115 31 135 1.20e-42 152
Msa0030160 AT5G06100.4 60.000 105 42 0 11 115 31 135 1.20e-42 152
Msa0030160 AT5G12870.1 62.857 105 39 0 12 116 18 122 1.48e-42 146
Msa0030160 AT3G08500.1 62.857 105 39 0 12 116 30 134 5.42e-42 147
Msa0030160 AT4G26930.1 59.223 103 42 0 12 114 19 121 6.59e-42 147
Msa0030160 AT2G26960.1 57.547 106 45 0 9 114 17 122 1.10e-41 148
Msa0030160 AT3G48920.1 57.018 114 49 0 13 126 19 132 2.35e-41 143
Msa0030160 AT1G25340.1 58.333 108 45 0 13 120 19 126 5.54e-41 142
Msa0030160 AT3G11440.2 56.731 104 45 0 12 115 41 144 1.46e-40 145
Msa0030160 AT5G52260.1 57.143 119 51 0 9 127 9 127 3.51e-40 140
Msa0030160 AT3G11440.3 56.731 104 45 0 12 115 41 144 4.50e-40 145
Msa0030160 AT3G11440.4 56.731 104 45 0 12 115 41 144 4.50e-40 145
Msa0030160 AT3G11440.1 56.731 104 45 0 12 115 41 144 4.50e-40 145
Msa0030160 AT4G25560.1 63.107 103 38 0 13 115 11 113 5.15e-40 140
Msa0030160 AT5G49620.1 49.367 158 71 3 8 158 22 177 7.45e-40 140
Msa0030160 AT1G48000.1 60.194 103 41 0 12 114 32 134 1.17e-39 138
Msa0030160 AT2G47190.1 55.556 108 48 0 8 115 16 123 1.34e-39 139
Msa0030160 AT1G66370.1 50.806 124 58 1 11 131 7 130 2.70e-39 137
Msa0030160 AT3G23250.2 41.026 234 94 8 58 257 1 224 2.93e-39 136
Msa0030160 AT3G06490.1 59.459 111 45 0 8 118 15 125 2.39e-38 137
Msa0030160 AT3G46130.1 51.261 119 53 1 11 129 8 121 1.34e-37 133
Msa0030160 AT5G59780.3 51.282 117 52 1 13 129 9 120 5.79e-37 130
Msa0030160 AT1G25340.2 55.556 108 43 1 13 120 19 121 1.20e-36 131
Msa0030160 AT1G25340.3 55.556 108 43 1 13 120 19 121 1.96e-36 131
Msa0030160 AT1G66380.1 52.991 117 55 0 11 127 7 123 1.97e-36 126
Msa0030160 AT3G53200.1 55.963 109 48 0 12 120 9 117 3.67e-36 129
Msa0030160 AT5G49620.2 45.349 172 71 4 8 158 22 191 4.68e-36 130
Msa0030160 AT1G66390.1 57.143 105 45 0 11 115 7 111 3.09e-35 127
Msa0030160 AT1G56650.1 56.190 105 46 0 11 115 7 111 3.50e-35 126
Msa0030160 AT5G35550.2 48.062 129 61 1 39 167 44 166 4.65e-35 126
Msa0030160 AT5G14750.3 58.065 93 34 1 38 125 3 95 5.77e-35 124
Msa0030160 AT3G12820.2 75.714 70 17 0 47 116 1 70 1.94e-34 123
Msa0030160 AT5G26660.2 75.000 72 18 0 45 116 14 85 8.93e-33 122
Msa0030160 AT3G47600.2 69.737 76 23 0 45 120 39 114 2.84e-31 118
Msa0030160 AT3G27810.2 55.102 98 44 0 45 142 4 101 1.01e-30 113
Msa0030160 AT3G60460.1 44.954 109 59 1 7 114 6 114 3.53e-30 115
Msa0030160 AT2G26950.1 47.525 101 53 0 9 109 13 113 1.10e-29 115
Msa0030160 AT3G46130.3 59.302 86 30 1 44 129 9 89 8.73e-29 109
Msa0030160 AT5G40350.2 65.278 72 25 0 45 116 5 76 1.07e-28 107
Msa0030160 AT2G23290.1 52.427 103 46 2 14 115 13 113 1.68e-28 110
Msa0030160 AT4G37260.1 37.647 170 95 3 5 165 4 171 1.86e-28 110
Msa0030160 AT3G46130.4 60.000 85 29 1 45 129 20 99 2.21e-28 108
Msa0030160 AT5G59780.2 60.000 85 29 1 45 129 20 99 2.48e-28 107
Msa0030160 AT5G11510.5 30.534 262 139 6 12 243 79 327 2.57e-28 114
Msa0030160 AT5G11510.2 30.534 262 139 6 12 243 79 327 2.65e-28 114
Msa0030160 AT5G11510.3 30.534 262 139 6 12 243 79 327 4.50e-28 113
Msa0030160 AT5G11510.1 30.534 262 139 6 12 243 79 327 4.50e-28 113
Msa0030160 AT5G11510.4 30.534 262 139 6 12 243 79 327 4.50e-28 113
Msa0030160 AT3G53200.2 61.842 76 29 0 45 120 9 84 2.74e-27 105
Msa0030160 AT1G69560.1 43.411 129 67 3 9 133 102 228 5.75e-27 107
Msa0030160 AT1G69560.2 43.411 129 67 3 9 133 118 244 7.15e-27 107
Msa0030160 AT3G09230.1 38.095 147 78 3 14 152 55 196 9.01e-27 107
Msa0030160 AT1G17950.1 49.533 107 51 2 10 115 1 105 1.05e-26 104
Msa0030160 AT3G50060.1 43.066 137 69 4 14 144 6 139 2.64e-26 104
Msa0030160 AT1G22640.3 74.576 59 15 0 58 116 1 59 3.69e-26 101
Msa0030160 AT3G55730.1 49.057 106 45 2 14 115 56 156 6.71e-26 105
Msa0030160 AT1G73410.2 35.610 205 112 5 14 211 6 197 8.28e-26 100
Msa0030160 AT5G02320.1 48.113 106 52 2 12 116 125 228 1.05e-25 105
Msa0030160 AT5G02320.1 34.906 106 63 3 10 112 71 173 3.16e-13 69.3
Msa0030160 AT5G02320.2 48.113 106 52 2 12 116 125 228 1.05e-25 105
Msa0030160 AT5G02320.2 34.906 106 63 3 10 112 71 173 3.16e-13 69.3
Msa0030160 AT1G73410.1 35.577 208 113 6 14 215 6 198 1.37e-25 101
Msa0030160 AT5G02320.3 48.113 106 52 2 12 116 65 168 1.43e-25 105
Msa0030160 AT5G02320.3 34.906 106 63 3 10 112 11 113 4.98e-13 68.9
Msa0030160 AT1G26780.1 44.828 116 61 2 12 126 96 209 1.46e-25 102
Msa0030160 AT2G39880.1 49.057 106 45 2 14 115 50 150 1.61e-25 103
Msa0030160 AT1G26780.2 44.828 116 61 2 12 126 96 209 2.25e-25 103
Msa0030160 AT5G67300.1 48.544 103 50 2 14 115 6 106 3.89e-25 101
Msa0030160 AT1G66380.3 55.294 85 38 0 43 127 6 90 1.05e-24 95.1
Msa0030160 AT5G14750.4 60.294 68 27 0 58 125 1 68 1.24e-24 96.3
Msa0030160 AT5G14750.2 60.294 68 27 0 58 125 1 68 1.24e-24 96.3
Msa0030160 AT4G33450.1 41.803 122 63 3 3 123 13 127 1.35e-24 99.0
Msa0030160 AT3G09370.2 47.619 105 52 2 12 115 133 235 1.89e-24 102
Msa0030160 AT3G09370.2 35.849 106 66 2 14 118 83 187 1.33e-13 70.5
Msa0030160 AT3G09370.1 47.619 105 52 2 12 115 128 230 1.90e-24 102
Msa0030160 AT3G09370.1 35.849 106 66 2 14 118 78 182 1.39e-13 70.5
Msa0030160 AT3G09370.3 47.619 105 52 2 12 115 141 243 2.54e-24 101
Msa0030160 AT3G09370.3 35.849 106 66 2 14 118 91 195 1.46e-13 70.5
Msa0030160 AT3G27785.1 49.020 102 49 2 8 108 183 282 2.96e-24 100
Msa0030160 AT4G18770.1 39.831 118 68 2 8 124 211 326 6.11e-24 100
Msa0030160 AT3G29020.1 40.870 115 65 2 14 127 65 177 7.74e-24 96.7
Msa0030160 AT4G32730.5 43.925 107 57 2 12 117 85 189 1.10e-23 100
Msa0030160 AT4G32730.5 34.259 108 65 3 14 118 35 139 1.20e-13 70.9
Msa0030160 AT4G32730.4 43.925 107 57 2 12 117 85 189 1.10e-23 100
Msa0030160 AT4G32730.4 34.259 108 65 3 14 118 35 139 1.20e-13 70.9
Msa0030160 AT4G32730.3 43.925 107 57 2 12 117 85 189 1.10e-23 100
Msa0030160 AT4G32730.3 34.259 108 65 3 14 118 35 139 1.20e-13 70.9
Msa0030160 AT4G32730.2 43.925 107 57 2 12 117 85 189 1.10e-23 100
Msa0030160 AT4G32730.2 34.259 108 65 3 14 118 35 139 1.20e-13 70.9
Msa0030160 AT4G32730.1 43.925 107 57 2 12 117 85 189 1.19e-23 100
Msa0030160 AT4G32730.1 34.259 108 65 3 14 118 35 139 1.19e-13 70.9
Msa0030160 AT5G58850.1 35.821 201 103 7 12 209 103 280 1.27e-23 99.4
Msa0030160 AT3G29020.2 40.870 115 65 2 14 127 67 179 1.34e-23 97.4
Msa0030160 AT5G40360.1 37.984 129 66 3 12 140 156 270 4.64e-23 96.7
Msa0030160 AT1G71030.1 54.430 79 35 1 38 116 7 84 1.43e-22 92.4
Msa0030160 AT1G71030.2 59.091 66 27 0 51 116 5 70 1.68e-22 91.7
Msa0030160 AT5G11050.1 41.429 140 64 4 14 149 105 230 2.79e-22 95.5
Msa0030160 AT1G66380.2 51.220 82 40 0 11 92 7 88 4.74e-22 88.6
Msa0030160 AT1G18960.1 43.220 118 60 4 1 118 1 111 8.77e-22 92.4
Msa0030160 AT5G17800.1 38.525 122 71 2 14 135 93 210 1.44e-20 89.4
Msa0030160 AT2G37630.1 40.517 116 66 2 14 127 4 118 1.37e-19 87.4
Msa0030160 AT4G00540.2 35.542 166 94 4 12 165 101 265 1.70e-19 87.4
Msa0030160 AT4G00540.2 34.579 107 62 3 14 112 46 152 2.59e-12 66.6
Msa0030160 AT4G00540.1 35.542 166 94 4 12 165 99 263 2.64e-19 87.0
Msa0030160 AT4G00540.1 34.579 107 62 3 14 112 44 150 4.47e-12 65.9
Msa0030160 AT5G39700.1 41.667 96 55 1 15 110 57 151 1.04e-17 79.0
Msa0030160 AT2G25230.1 38.835 103 60 2 17 118 29 129 7.22e-17 77.8
Msa0030160 AT1G14350.2 38.095 126 67 3 17 132 28 152 1.89e-16 79.0
Msa0030160 AT1G14350.1 38.095 126 67 3 17 132 28 152 1.89e-16 79.0
Msa0030160 AT2G02820.3 40.404 99 58 1 17 115 33 130 8.58e-16 76.3
Msa0030160 AT2G02820.1 40.404 99 58 1 17 115 33 130 1.42e-15 76.3
Msa0030160 AT2G02820.2 40.404 99 58 1 17 115 33 130 1.43e-15 76.3
Msa0030160 AT4G25560.2 72.093 43 12 0 73 115 5 47 1.16e-14 71.2
Msa0030160 AT3G28910.2 58.000 50 21 0 78 127 2 51 6.67e-14 69.7
Msa0030160 AT5G59780.1 55.000 60 22 1 70 129 1 55 8.95e-14 67.8
Msa0030160 AT3G46130.2 55.000 60 22 1 70 129 1 55 9.88e-14 68.2
Msa0030160 AT5G40430.1 37.500 80 49 1 48 127 86 164 1.77e-13 68.9
Msa0030160 AT1G16490.2 47.561 82 40 2 78 158 13 92 5.98e-13 66.6
Msa0030160 AT1G74650.3 71.795 39 11 0 78 116 2 40 6.34e-12 64.3
Msa0030160 AT3G18100.1 35.417 96 61 1 13 108 545 639 9.14e-12 65.5
Msa0030160 AT3G18100.4 35.417 96 61 1 13 108 384 478 1.14e-11 65.1
Msa0030160 AT3G18100.3 35.417 96 61 1 13 108 497 591 1.17e-11 65.1
Msa0030160 AT3G18100.2 35.417 96 61 1 13 108 332 426 1.38e-11 64.7

Find 74 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTTAGTACATCATTTAT+TGG 0.195748 1_1:+56209140 None:intergenic
TTTATGGAAACAACAATATA+TGG 0.263309 1_1:+56212993 None:intergenic
AGGAGCTCTTACCATCTTTA+AGG 0.266856 1_1:+56212959 None:intergenic
AAATTTCCTCTCTTGATATC+TGG 0.299157 1_1:+56212268 None:intergenic
TTTGGTATGATATATTTATC+AGG 0.311385 1_1:-56209663 Msa0030160:CDS
TCATTGCGACGTGGTAATTT+CGG 0.319389 1_1:-56209360 Msa0030160:three_prime_UTR
CGGTCTGTCTGAGCAGGCCT+TGG 0.327537 1_1:-56209509 Msa0030160:three_prime_UTR
ATTTCATTGTCCGTTCTTCC+TGG 0.345249 1_1:+56210102 None:intergenic
AAATAGCCAACATATGTCTT+TGG 0.351037 1_1:-56213106 Msa0030160:five_prime_UTR
TTGCAAGTACCTGCTAGCTT+TGG 0.353121 1_1:+56212831 None:intergenic
AAGTTTAGACGAGTTGGAAT+TGG 0.370901 1_1:-56209535 Msa0030160:three_prime_UTR
TGCAAGTACCTGCTAGCTTT+GGG 0.383184 1_1:+56212832 None:intergenic
TCTTTGTTTCCGAGTTTGTT+TGG 0.396013 1_1:+56210040 None:intergenic
CTCTCTGGAAGAATTTCATC+AGG 0.402583 1_1:+56209730 None:intergenic
ACTTTCTATTAGCCAAACTT+TGG 0.407289 1_1:+56209598 None:intergenic
TGTAATCTATCTATGTAAAG+AGG 0.416617 1_1:-56209282 Msa0030160:three_prime_UTR
AGCTCCTTGTTGTGAAAAGA+TGG 0.421034 1_1:-56212943 Msa0030160:CDS
ATTTCATTTGAGATTGTCAA+TGG 0.421450 1_1:+56209769 None:intergenic
TACATGAAATGCTTGGAAAC+AGG 0.426813 1_1:-56212213 Msa0030160:intron
ATGAAAGACTACGGTTCAAT+TGG 0.432593 1_1:+56209379 None:intergenic
ATATGTTGGCTATTTATCCT+TGG 0.441991 1_1:+56213114 None:intergenic
CAAACTCGGAAACAAAGAAA+AGG 0.446812 1_1:-56210035 Msa0030160:CDS
AGTTTAGACGAGTTGGAATT+GGG 0.446978 1_1:-56209534 Msa0030160:three_prime_UTR
AACTAAAAGTTTAGACGAGT+TGG 0.452020 1_1:-56209541 Msa0030160:three_prime_UTR
TAGATTACATATCATTAGCT+TGG 0.457665 1_1:+56209296 None:intergenic
TATAATTCTAACTTGGATGA+TGG 0.461037 1_1:-56209694 Msa0030160:CDS
TCATTTCCAAAGACATATGT+TGG 0.477151 1_1:+56213100 None:intergenic
TTGGTCAGAAGCAGCAGCAT+TGG 0.478820 1_1:-56209824 Msa0030160:CDS
ATTAAGCTACATGAAATGCT+TGG 0.489832 1_1:-56212220 Msa0030160:CDS
GTGGGAAAAGCTGCAGACTT+AGG 0.491225 1_1:-56212309 Msa0030160:CDS
TATGATATATTTATCAGGAC+TGG 0.491362 1_1:-56209658 Msa0030160:CDS
TTCTCAGGCTTGTTAAGGTG+TGG 0.492781 1_1:-56212328 Msa0030160:intron
TGGGATTGAAGAGGGGTCCT+TGG 0.493355 1_1:-56212923 Msa0030160:CDS
TAATCTTCATGAGTACTCTC+TGG 0.500360 1_1:+56209715 None:intergenic
AATTATTATTTCTAGGTGGT+CGG 0.500708 1_1:-56210142 Msa0030160:intron
TTCTAACTTGGATGATGGCA+TGG 0.501664 1_1:-56209689 Msa0030160:CDS
CGTGCCCTCCCAAAGCTAGC+AGG 0.503173 1_1:-56212840 Msa0030160:intron
TGAAGATTATAATTCTAACT+TGG 0.504622 1_1:-56209701 Msa0030160:CDS
AAGTGAAGACATTGAGTCCA+TGG 0.505416 1_1:-56209878 Msa0030160:CDS
TGAAAAGATGGGATTGAAGA+GGG 0.514577 1_1:-56212931 Msa0030160:CDS
TCTCAGGCTTGTTAAGGTGT+GGG 0.520871 1_1:-56212327 Msa0030160:intron
TGGGTACGGTCTGTCTGAGC+AGG 0.524198 1_1:-56209515 Msa0030160:three_prime_UTR
GGAGGGCACGCCAATTGCCA+TGG 0.528545 1_1:+56212853 None:intergenic
AAACTCGGAAACAAAGAAAA+GGG 0.536700 1_1:-56210034 Msa0030160:CDS
AGACGAGTTGGAATTGGGTA+CGG 0.537867 1_1:-56209529 Msa0030160:three_prime_UTR
GGTCTGTCTGAGCAGGCCTT+GGG 0.540479 1_1:-56209508 Msa0030160:three_prime_UTR
TTTGGAAATGAAGTTCAAGA+AGG 0.541677 1_1:-56213088 Msa0030160:five_prime_UTR
TACAGCCATTGTGTCCTCCA+TGG 0.550063 1_1:+56209861 None:intergenic
AAAACACAAGACCTTAAAGA+TGG 0.561637 1_1:-56212970 Msa0030160:exon
GAGGGGTCCTTGGTCTCTTG+AGG 0.562635 1_1:-56212913 Msa0030160:CDS
TACTGATAATGTACACTACT+CGG 0.563588 1_1:-56209480 Msa0030160:three_prime_UTR
GGAAAACCCTCTCAAAACTC+AGG 0.565148 1_1:+56209619 None:intergenic
GTAATCTATCTATGTAAAGA+GGG 0.566120 1_1:-56209281 Msa0030160:three_prime_UTR
ATTTCATCAGGGTATTGAAG+TGG 0.575754 1_1:+56209742 None:intergenic
GCTCCTTGTTGTGAAAAGAT+GGG 0.580548 1_1:-56212942 Msa0030160:CDS
GTGAAAAGATGGGATTGAAG+AGG 0.580574 1_1:-56212932 Msa0030160:CDS
AAGTACCTGCTAGCTTTGGG+AGG 0.580693 1_1:+56212835 None:intergenic
AGCAAAATTACCAGGAAGAA+CGG 0.586442 1_1:-56210112 Msa0030160:CDS
AAATTTCACAAATGAAGAAG+AGG 0.588308 1_1:-56212251 Msa0030160:CDS
GGAAAAGCTGCAGACTTAGG+TGG 0.597620 1_1:-56212306 Msa0030160:CDS
GTAAAGAAATTCTCTCACAT+TGG 0.597710 1_1:-56209458 Msa0030160:three_prime_UTR
GCAATTGCAGCAAAATTACC+AGG 0.598499 1_1:-56210120 Msa0030160:CDS
TGATGTACTAAATCAGTAAG+CGG 0.612627 1_1:-56209132 Msa0030160:three_prime_UTR
TGAGTCCATGGAGGACACAA+TGG 0.617365 1_1:-56209866 Msa0030160:CDS
TCATCTTCCTCAAGAGACCA+AGG 0.622778 1_1:+56212906 None:intergenic
GAAGCTAAACCAAACAAACT+CGG 0.632566 1_1:-56210049 Msa0030160:CDS
TTGAGACCAGATATCAAGAG+AGG 0.635887 1_1:-56212274 Msa0030160:CDS
AGTACCTGCTAGCTTTGGGA+GGG 0.642338 1_1:+56212836 None:intergenic
CACGTCGCAATGAAAGACTA+CGG 0.649830 1_1:+56209370 None:intergenic
CATTATCAGTATATGACCCA+AGG 0.650676 1_1:+56209492 None:intergenic
TCTCTGGAAGAATTTCATCA+GGG 0.690572 1_1:+56209731 None:intergenic
CGTAGTCTTTCATTGCGACG+TGG 0.690979 1_1:-56209369 Msa0030160:three_prime_UTR
GAAAAGATGGGATTGAAGAG+GGG 0.697832 1_1:-56212930 Msa0030160:CDS
TGAAGACATTGAGTCCATGG+AGG 0.753994 1_1:-56209875 Msa0030160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr1_1:56211393-56211412 Msa0030160:intron 0.0%
!! TATATATATATATATATATA+GGG - chr1_1:56211392-56211411 Msa0030160:intron 0.0%
!! ATAAAAAAATTGATATGATT+TGG - chr1_1:56209853-56209872 Msa0030160:CDS 10.0%
!! CAATCATATAAATTAAAAAT+TGG + chr1_1:56210094-56210113 None:intergenic 10.0%
!! ATATTTATTTAAGTAAGAAA+TGG - chr1_1:56210171-56210190 Msa0030160:intron 10.0%
!! AAATAAGAATAAGAAATAAA+AGG + chr1_1:56210550-56210569 None:intergenic 10.0%
!!! TAAAAAATTCCAAATTTTTT+GGG + chr1_1:56211632-56211651 None:intergenic 10.0%
!!! TTAAAAAATTCCAAATTTTT+TGG + chr1_1:56211633-56211652 None:intergenic 10.0%
!!! ATGAATTTTTACATTTTTTA+TGG - chr1_1:56211670-56211689 Msa0030160:intron 10.0%
!! ACTAAAATTAACTTAAAAAT+AGG - chr1_1:56211800-56211819 Msa0030160:intron 10.0%
!! CTAAAATTAACTTAAAAATA+GGG - chr1_1:56211801-56211820 Msa0030160:intron 10.0%
!! TGAAAAATTTGTATATTTAT+AGG - chr1_1:56211891-56211910 Msa0030160:intron 10.0%
!! GAAAAATTTGTATATTTATA+GGG - chr1_1:56211892-56211911 Msa0030160:intron 10.0%
!! TGATTCATTAATATATATAT+GGG + chr1_1:56211935-56211954 None:intergenic 10.0%
!! TTGATTCATTAATATATATA+TGG + chr1_1:56211936-56211955 None:intergenic 10.0%
!!! TTAATTGAATTATTATTTCT+AGG - chr1_1:56212088-56212107 Msa0030160:intron 10.0%
!! TTTCTTAAAATATAGATAGA+TGG + chr1_1:56209433-56209452 None:intergenic 15.0%
!!! AAAATCTTTCAAGTAATATA+TGG - chr1_1:56209477-56209496 Msa0030160:three_prime_UTR 15.0%
!!! AAATCTTTCAAGTAATATAT+GGG - chr1_1:56209478-56209497 Msa0030160:three_prime_UTR 15.0%
!! AAAACTAGTTAAGATTATTA+GGG + chr1_1:56209713-56209732 None:intergenic 15.0%
!!! TTTTTTTTATCAATTTTCTC+AGG - chr1_1:56209894-56209913 Msa0030160:CDS 15.0%
!!! GTTTTTAAAAGTAGAATTAA+AGG + chr1_1:56210356-56210375 None:intergenic 15.0%
!!! TAATTCTACTTTTAAAAACT+AGG - chr1_1:56210357-56210376 Msa0030160:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - chr1_1:56211832-56211851 Msa0030160:intron 15.0%
!!! TTTTAGTTGTCAAAAAAATT+TGG + chr1_1:56212684-56212703 None:intergenic 15.0%
!! TTTATGGAAACAACAATATA+TGG + chr1_1:56209247-56209266 None:intergenic 20.0%
!!! AAAAATCTTTCAAGTAACAT+AGG - chr1_1:56209450-56209469 Msa0030160:three_prime_UTR 20.0%
!! AAGTGTTAGATATATAAAAG+AGG - chr1_1:56209614-56209633 Msa0030160:exon 20.0%
!! TCATAATATCTAACATCTTA+AGG - chr1_1:56209641-56209660 Msa0030160:CDS 20.0%
!! CAAAACTAGTTAAGATTATT+AGG + chr1_1:56209714-56209733 None:intergenic 20.0%
!!! ATTTAAGTAAGAAATGGATT+TGG - chr1_1:56210177-56210196 Msa0030160:intron 20.0%
!! AATTAGAGAAAAAGAAAAGA+TGG + chr1_1:56210209-56210228 None:intergenic 20.0%
!! ATTGATAAACAAGATTAAAG+TGG - chr1_1:56210226-56210245 Msa0030160:intron 20.0%
!! GGAACAAAATTAAAATCAAA+AGG - chr1_1:56210289-56210308 Msa0030160:intron 20.0%
!! GTTGTGTATACTAAATATAA+TGG - chr1_1:56210311-56210330 Msa0030160:intron 20.0%
!! TAAGAATAAGAAATAAAAGG+TGG + chr1_1:56210547-56210566 None:intergenic 20.0%
!! ACTTAAAAAATGATGTATGT+TGG - chr1_1:56210643-56210662 Msa0030160:intron 20.0%
!!! TGTTGGTTTTTTATACTATT+TGG - chr1_1:56210660-56210679 Msa0030160:intron 20.0%
!! AGTGGTAATATAAAAAGTAA+AGG - chr1_1:56211030-56211049 Msa0030160:intron 20.0%
!! GTGACTACATAATTAATTAT+AGG + chr1_1:56211110-56211129 None:intergenic 20.0%
!!! TATAGGGTTAAATATGTTTT+TGG - chr1_1:56211428-56211447 Msa0030160:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG + chr1_1:56211455-56211474 None:intergenic 20.0%
!!! TGAAAAGTTGGTATATTTAT+AGG + chr1_1:56211456-56211475 None:intergenic 20.0%
!! TACATATGAGTTTACTTTAA+AGG + chr1_1:56211550-56211569 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + chr1_1:56211828-56211847 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - chr1_1:56211831-56211850 Msa0030160:intron 20.0%
!!! ATTGAATTATTATTTCTAGG+TGG - chr1_1:56212091-56212110 Msa0030160:intron 20.0%
!! ACAATGAAATAAAAAATGTG+TGG - chr1_1:56212148-56212167 Msa0030160:intron 20.0%
!! TGAAGATTATAATTCTAACT+TGG - chr1_1:56212536-56212555 Msa0030160:intron 20.0%
!! TTTGGTATGATATATTTATC+AGG - chr1_1:56212574-56212593 Msa0030160:intron 20.0%
!!! TTTTCTTTAATTAGGAGTTT+AGG - chr1_1:56213055-56213074 Msa0030160:five_prime_UTR 20.0%
!! TGATTTAGTACATCATTTAT+TGG + chr1_1:56213100-56213119 None:intergenic 20.0%
!!! TAAGGTCTTGTGTTTTTTTA+TGG + chr1_1:56209263-56209282 None:intergenic 25.0%
! GCACTATTGTAAAAAATTGA+TGG + chr1_1:56209524-56209543 None:intergenic 25.0%
!! ATCTAACATCTTAAGGTTTT+AGG - chr1_1:56209648-56209667 Msa0030160:CDS 25.0%
! AAATTTCACAAATGAAGAAG+AGG - chr1_1:56209986-56210005 Msa0030160:CDS 25.0%
!! ATAAACAGAACATGTTGATT+AGG + chr1_1:56210122-56210141 None:intergenic 25.0%
! ATAAACAAGATTAAAGTGGT+GGG - chr1_1:56210230-56210249 Msa0030160:intron 25.0%
! TTGACAATTCATAATGCATA+TGG + chr1_1:56210266-56210285 None:intergenic 25.0%
! GTTGAATGAAAAAAAACCAT+TGG + chr1_1:56210513-56210532 None:intergenic 25.0%
! AATAAGAAATAAAAGGTGGT+GGG + chr1_1:56210543-56210562 None:intergenic 25.0%
! ATTAATTATGTAGTCACTAG+TGG - chr1_1:56211113-56211132 Msa0030160:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr1_1:56211861-56211880 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr1_1:56211860-56211879 None:intergenic 25.0%
!! TGAAGATGGAAAATTTTTGA+GGG + chr1_1:56211515-56211534 None:intergenic 25.0%
!! TATGAGTTTACTTTAAAGGA+GGG + chr1_1:56211546-56211565 None:intergenic 25.0%
!! ATATGAGTTTACTTTAAAGG+AGG + chr1_1:56211547-56211566 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr1_1:56211860-56211879 Msa0030160:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr1_1:56211861-56211880 Msa0030160:intron 25.0%
! ACATAGTTTAAATTCTCTCT+GGG - chr1_1:56212004-56212023 Msa0030160:intron 25.0%
!!! AATTATTATTTCTAGGTGGT+CGG - chr1_1:56212095-56212114 Msa0030160:intron 25.0%
!! ATTTCATTTGAGATTGTCAA+TGG + chr1_1:56212471-56212490 None:intergenic 25.0%
! TATAATTCTAACTTGGATGA+TGG - chr1_1:56212543-56212562 Msa0030160:intron 25.0%
! TATGATATATTTATCAGGAC+TGG - chr1_1:56212579-56212598 Msa0030160:intron 25.0%
! TAGATTACATATCATTAGCT+TGG + chr1_1:56212944-56212963 None:intergenic 25.0%
! TGTAATCTATCTATGTAAAG+AGG - chr1_1:56212955-56212974 Msa0030160:exon 25.0%
! GTAATCTATCTATGTAAAGA+GGG - chr1_1:56212956-56212975 Msa0030160:exon 25.0%
! ATATGTTGGCTATTTATCCT+TGG + chr1_1:56209126-56209145 None:intergenic 30.0%
AAATAGCCAACATATGTCTT+TGG - chr1_1:56209131-56209150 Msa0030160:three_prime_UTR 30.0%
TCATTTCCAAAGACATATGT+TGG + chr1_1:56209140-56209159 None:intergenic 30.0%
TTTGGAAATGAAGTTCAAGA+AGG - chr1_1:56209149-56209168 Msa0030160:three_prime_UTR 30.0%
AAAACACAAGACCTTAAAGA+TGG - chr1_1:56209267-56209286 Msa0030160:three_prime_UTR 30.0%
!! GTTTTTGGATGTAAGATGTA+AGG + chr1_1:56209360-56209379 None:intergenic 30.0%
ACATCTTACATCCAAAAACA+TGG - chr1_1:56209361-56209380 Msa0030160:three_prime_UTR 30.0%
GTTAAGATTATTAGGGAGAT+TGG + chr1_1:56209706-56209725 None:intergenic 30.0%
! AATGGTGCTAACTATAAGAT+GGG + chr1_1:56209781-56209800 None:intergenic 30.0%
! TAATGGTGCTAACTATAAGA+TGG + chr1_1:56209782-56209801 None:intergenic 30.0%
ATGAAGTTCATGGTACTTAA+TGG + chr1_1:56209799-56209818 None:intergenic 30.0%
AAATTTCCTCTCTTGATATC+TGG + chr1_1:56209972-56209991 None:intergenic 30.0%
ATTAAGCTACATGAAATGCT+TGG - chr1_1:56210017-56210036 Msa0030160:CDS 30.0%
GATAAACAAGATTAAAGTGG+TGG - chr1_1:56210229-56210248 Msa0030160:intron 30.0%
TAAACAAGATTAAAGTGGTG+GGG - chr1_1:56210231-56210250 Msa0030160:intron 30.0%
TGCATTATGAATTGTCAACT+TGG - chr1_1:56210268-56210287 Msa0030160:intron 30.0%
!! ATGTTGATGACCATTGTAAA+TGG + chr1_1:56210400-56210419 None:intergenic 30.0%
ATGAAAAAAAACCATTGGAG+AGG + chr1_1:56210508-56210527 None:intergenic 30.0%
ATAAGAAATAAAAGGTGGTG+GGG + chr1_1:56210542-56210561 None:intergenic 30.0%
GAATAAGAAATAAAAGGTGG+TGG + chr1_1:56210544-56210563 None:intergenic 30.0%
! GTGAAGATGGAAAATTTTTG+AGG + chr1_1:56211516-56211535 None:intergenic 30.0%
TTATAGGGACTAAAAGTTGA+AGG - chr1_1:56211847-56211866 Msa0030160:intron 30.0%
GACATAGTTTAAATTCTCTC+TGG - chr1_1:56212003-56212022 Msa0030160:intron 30.0%
AAACTCGGAAACAAAGAAAA+GGG - chr1_1:56212203-56212222 Msa0030160:intron 30.0%
!! GAATCAGAACGTTTGATTTT+TGG + chr1_1:56212240-56212259 None:intergenic 30.0%
! GATTTTTCATCTGTCACTAT+TGG - chr1_1:56212318-56212337 Msa0030160:CDS 30.0%
! CTGTAATTGATGAGAGTTTT+TGG - chr1_1:56212394-56212413 Msa0030160:intron 30.0%
ACTTTCTATTAGCCAAACTT+TGG + chr1_1:56212642-56212661 None:intergenic 30.0%
AACTAAAAGTTTAGACGAGT+TGG - chr1_1:56212696-56212715 Msa0030160:intron 30.0%
! TACTGATAATGTACACTACT+CGG - chr1_1:56212757-56212776 Msa0030160:intron 30.0%
GTAAAGAAATTCTCTCACAT+TGG - chr1_1:56212779-56212798 Msa0030160:intron 30.0%
TGATGTACTAAATCAGTAAG+CGG - chr1_1:56213105-56213124 Msa0030160:five_prime_UTR 30.0%
! AATCCCATCTTTTCACAACA+AGG + chr1_1:56209301-56209320 None:intergenic 35.0%
TGAAAAGATGGGATTGAAGA+GGG - chr1_1:56209306-56209325 Msa0030160:three_prime_UTR 35.0%
! ATGGTGCTAACTATAAGATG+GGG + chr1_1:56209780-56209799 None:intergenic 35.0%
TTTGTGAGCTATGAAGTTCA+TGG + chr1_1:56209809-56209828 None:intergenic 35.0%
!!! CAATTTTCTCAGGCTTGTTA+AGG - chr1_1:56209904-56209923 Msa0030160:CDS 35.0%
TACATGAAATGCTTGGAAAC+AGG - chr1_1:56210024-56210043 Msa0030160:CDS 35.0%
AAACAAGATTAAAGTGGTGG+GGG - chr1_1:56210232-56210251 Msa0030160:intron 35.0%
! CATTGTAAATGGTCTAAGGT+GGG + chr1_1:56210389-56210408 None:intergenic 35.0%
TGACCATTGTAAATGGTCTA+AGG + chr1_1:56210393-56210412 None:intergenic 35.0%
!! TTGAAAAAGTGGGTGTTGAA+GGG + chr1_1:56210429-56210448 None:intergenic 35.0%
!! ATTGAAAAAGTGGGTGTTGA+AGG + chr1_1:56210430-56210449 None:intergenic 35.0%
GTGTTGGGAATTGAAAAAGT+GGG + chr1_1:56210439-56210458 None:intergenic 35.0%
! AGTGTTGGGAATTGAAAAAG+TGG + chr1_1:56210440-56210459 None:intergenic 35.0%
TTAAGAGAGAGAAGATGATG+TGG + chr1_1:56210463-56210482 None:intergenic 35.0%
TTCAACTTTAACCTCTCCAA+TGG - chr1_1:56210494-56210513 Msa0030160:intron 35.0%
! TTTTTGCATGCCATGTGAAA+TGG - chr1_1:56210703-56210722 Msa0030160:intron 35.0%
! TTTTTGCATGCCATGTGAAA+TGG - chr1_1:56210703-56210722 Msa0030160:intron 35.0%
! TTTTTGCATGCCATGTGAAA+TGG - chr1_1:56210703-56210722 Msa0030160:intron 35.0%
GAGGGACTAAAATGAAAAGT+TGG + chr1_1:56211468-56211487 None:intergenic 35.0%
TTTGAGGGACTAAAAGTTGA+AGG + chr1_1:56211500-56211519 None:intergenic 35.0%
GAATCTCTGCCCAAAAAATT+TGG - chr1_1:56211620-56211639 Msa0030160:intron 35.0%
AATCAATTTGATCCTTCACG+AGG - chr1_1:56211950-56211969 Msa0030160:intron 35.0%
AGCAAAATTACCAGGAAGAA+CGG - chr1_1:56212125-56212144 Msa0030160:intron 35.0%
GAAGCTAAACCAAACAAACT+CGG - chr1_1:56212188-56212207 Msa0030160:intron 35.0%
! TCTTTGTTTCCGAGTTTGTT+TGG + chr1_1:56212200-56212219 None:intergenic 35.0%
CAAACTCGGAAACAAAGAAA+AGG - chr1_1:56212202-56212221 Msa0030160:intron 35.0%
!! ATTTCATCAGGGTATTGAAG+TGG + chr1_1:56212498-56212517 None:intergenic 35.0%
! TCTCTGGAAGAATTTCATCA+GGG + chr1_1:56212509-56212528 None:intergenic 35.0%
TAATCTTCATGAGTACTCTC+TGG + chr1_1:56212525-56212544 None:intergenic 35.0%
! AAGTTTAGACGAGTTGGAAT+TGG - chr1_1:56212702-56212721 Msa0030160:intron 35.0%
! AGTTTAGACGAGTTGGAATT+GGG - chr1_1:56212703-56212722 Msa0030160:intron 35.0%
CATTATCAGTATATGACCCA+AGG + chr1_1:56212748-56212767 None:intergenic 35.0%
ATGAAAGACTACGGTTCAAT+TGG + chr1_1:56212861-56212880 None:intergenic 35.0%
AGGAGCTCTTACCATCTTTA+AGG + chr1_1:56209281-56209300 None:intergenic 40.0%
! AGCTCCTTGTTGTGAAAAGA+TGG - chr1_1:56209294-56209313 Msa0030160:three_prime_UTR 40.0%
! GCTCCTTGTTGTGAAAAGAT+GGG - chr1_1:56209295-56209314 Msa0030160:three_prime_UTR 40.0%
GTGAAAAGATGGGATTGAAG+AGG - chr1_1:56209305-56209324 Msa0030160:three_prime_UTR 40.0%
GAAAAGATGGGATTGAAGAG+GGG - chr1_1:56209307-56209326 Msa0030160:three_prime_UTR 40.0%
TACATCCAAAAACATGGCCA+TGG - chr1_1:56209367-56209386 Msa0030160:three_prime_UTR 40.0%
! AATTGCCATGGCCATGTTTT+TGG + chr1_1:56209375-56209394 None:intergenic 40.0%
AAAAACATGGCCATGGCAAT+TGG - chr1_1:56209374-56209393 Msa0030160:three_prime_UTR 40.0%
! ACTTTTCACATTCAGAGTCG+AGG + chr1_1:56209598-56209617 None:intergenic 40.0%
TTGAGACCAGATATCAAGAG+AGG - chr1_1:56209963-56209982 Msa0030160:CDS 40.0%
! AACAAGATTAAAGTGGTGGG+GGG - chr1_1:56210233-56210252 Msa0030160:intron 40.0%
CCATTGTAAATGGTCTAAGG+TGG + chr1_1:56210390-56210409 None:intergenic 40.0%
CCACCTTAGACCATTTACAA+TGG - chr1_1:56210387-56210406 Msa0030160:intron 40.0%
! AGAAGATGATGTGGAGTGTT+GGG + chr1_1:56210454-56210473 None:intergenic 40.0%
GCATTCTGTGGCAGATTAAT+TGG - chr1_1:56210881-56210900 Msa0030160:intron 40.0%
TGGATGAGAGAGAGGATTAA+CGG + chr1_1:56210915-56210934 None:intergenic 40.0%
AACAAGGAAAACCAGTGCAA+TGG + chr1_1:56210966-56210985 None:intergenic 40.0%
GTTTAACCTGACAGTCAACA+AGG + chr1_1:56210982-56211001 None:intergenic 40.0%
CACCTAAGACTATGTGCAAT+GGG + chr1_1:56211008-56211027 None:intergenic 40.0%
!!! CGTCTTATGGGTGCATTTTT+TGG + chr1_1:56211070-56211089 None:intergenic 40.0%
AGCTTCATGTGTCGTCTTAT+GGG + chr1_1:56211082-56211101 None:intergenic 40.0%
TAGCTTCATGTGTCGTCTTA+TGG + chr1_1:56211083-56211102 None:intergenic 40.0%
TTAGATCTGTGATGTGCCTT+AGG - chr1_1:56211225-56211244 Msa0030160:intron 40.0%
TAGATCTGTGATGTGCCTTA+GGG - chr1_1:56211226-56211245 Msa0030160:intron 40.0%
GCGAATCTCGTGGAAATATT+TGG - chr1_1:56211361-56211380 Msa0030160:intron 40.0%
GCAATTGCAGCAAAATTACC+AGG - chr1_1:56212117-56212136 Msa0030160:intron 40.0%
ATTTCATTGTCCGTTCTTCC+TGG + chr1_1:56212138-56212157 None:intergenic 40.0%
AAGTGAAGACATTGAGTCCA+TGG - chr1_1:56212359-56212378 Msa0030160:intron 40.0%
! CTCTCTGGAAGAATTTCATC+AGG + chr1_1:56212510-56212529 None:intergenic 40.0%
! TTCTAACTTGGATGATGGCA+TGG - chr1_1:56212548-56212567 Msa0030160:intron 40.0%
!! TGGATGATGGCATGGATTTT+TGG - chr1_1:56212556-56212575 Msa0030160:intron 40.0%
!!! AGAATTGCCTGAGTTTTGAG+AGG - chr1_1:56212611-56212630 Msa0030160:intron 40.0%
!!! GAATTGCCTGAGTTTTGAGA+GGG - chr1_1:56212612-56212631 Msa0030160:intron 40.0%
! TGAGAGGGTTTTCCAAAGTT+TGG - chr1_1:56212627-56212646 Msa0030160:intron 40.0%
TCATTGCGACGTGGTAATTT+CGG - chr1_1:56212877-56212896 Msa0030160:CDS 40.0%
TCATCTTCCTCAAGAGACCA+AGG + chr1_1:56209334-56209353 None:intergenic 45.0%
!! TGCAAGTACCTGCTAGCTTT+GGG + chr1_1:56209408-56209427 None:intergenic 45.0%
! TTGCAAGTACCTGCTAGCTT+TGG + chr1_1:56209409-56209428 None:intergenic 45.0%
GAGATTGGTGAATCGCTAAG+AGG + chr1_1:56209691-56209710 None:intergenic 45.0%
!! TTCTCAGGCTTGTTAAGGTG+TGG - chr1_1:56209909-56209928 Msa0030160:CDS 45.0%
!! TCTCAGGCTTGTTAAGGTGT+GGG - chr1_1:56209910-56209929 Msa0030160:CDS 45.0%
GAGAAGATGATGTGGAGTGT+TGG + chr1_1:56210455-56210474 None:intergenic 45.0%
ATAGTGCTCGCCATTTCACA+TGG + chr1_1:56210716-56210735 None:intergenic 45.0%
GTGAAATGGCGAGCACTATT+TGG - chr1_1:56210717-56210736 Msa0030160:intron 45.0%
ATAGTGCTCGCCATTTCACA+TGG + chr1_1:56210716-56210735 None:intergenic 45.0%
GTGAAATGGCGAGCACTATT+TGG - chr1_1:56210717-56210736 Msa0030160:intron 45.0%
AGAATGCTCGCCATTTCACA+TGG + chr1_1:56210822-56210841 None:intergenic 45.0%
TCCAGCAGTTCATTCAACAG+AGG - chr1_1:56210931-56210950 Msa0030160:intron 45.0%
ACCTCTGTTGAATGAACTGC+TGG + chr1_1:56210935-56210954 None:intergenic 45.0%
!! GGTTTTCCTTGTTGACTGTC+AGG - chr1_1:56210973-56210992 Msa0030160:intron 45.0%
CTCCCATTGCACATAGTCTT+AGG - chr1_1:56211003-56211022 Msa0030160:intron 45.0%
GCACCTAAGACTATGTGCAA+TGG + chr1_1:56211009-56211028 None:intergenic 45.0%
! CACATAGTCTTAGGTGCAAG+TGG - chr1_1:56211012-56211031 Msa0030160:intron 45.0%
AAAACTGAACGCGAATCTCG+TGG - chr1_1:56211351-56211370 Msa0030160:intron 45.0%
GGAGGGATCAAAAGTGAAGA+TGG + chr1_1:56211529-56211548 None:intergenic 45.0%
ACAAGTGTAACACCTCGTGA+AGG + chr1_1:56211965-56211984 None:intergenic 45.0%
TGAAGACATTGAGTCCATGG+AGG - chr1_1:56212362-56212381 Msa0030160:intron 45.0%
GGAAAACCCTCTCAAAACTC+AGG + chr1_1:56212621-56212640 None:intergenic 45.0%
! AGACGAGTTGGAATTGGGTA+CGG - chr1_1:56212708-56212727 Msa0030160:intron 45.0%
CACGTCGCAATGAAAGACTA+CGG + chr1_1:56212870-56212889 None:intergenic 45.0%
!!! AAAAAATTCTAATTTTTTTT+TGG - chr1_1:56211724-56211743 Msa0030160:intron 5.0%
!!! AAAAATTCTAATTTTTTTTT+GGG - chr1_1:56211725-56211744 Msa0030160:intron 5.0%
!!! TTTTTATTTTTTCTTTAATT+AGG - chr1_1:56213047-56213066 Msa0030160:five_prime_UTR 5.0%
!! AGTACCTGCTAGCTTTGGGA+GGG + chr1_1:56209404-56209423 None:intergenic 50.0%
!! AAGTACCTGCTAGCTTTGGG+AGG + chr1_1:56209405-56209424 None:intergenic 50.0%
GTGGGAAAAGCTGCAGACTT+AGG - chr1_1:56209928-56209947 Msa0030160:CDS 50.0%
GGAAAAGCTGCAGACTTAGG+TGG - chr1_1:56209931-56209950 Msa0030160:CDS 50.0%
! ATTAAAGTGGTGGGGGGCTA+GGG - chr1_1:56210239-56210258 Msa0030160:intron 50.0%
GTGAAATGGCGAGCATTCTG+TGG - chr1_1:56210823-56210842 Msa0030160:intron 50.0%
CATTCTGTGGCAATCCTGTG+CGG - chr1_1:56210836-56210855 Msa0030160:intron 50.0%
TGAACTGCTGGATGAGAGAG+AGG + chr1_1:56210923-56210942 None:intergenic 50.0%
GGTTCAACATGCCATTGCAC+TGG - chr1_1:56210952-56210971 Msa0030160:intron 50.0%
ATCTGTGATGTGCCTTAGGG+TGG - chr1_1:56211229-56211248 Msa0030160:intron 50.0%
TGCCTTAGGGTGGCAGTTTA+TGG - chr1_1:56211239-56211258 Msa0030160:intron 50.0%
TGCCATAAACTGCCACCCTA+AGG + chr1_1:56211244-56211263 None:intergenic 50.0%
TGAGTCCATGGAGGACACAA+TGG - chr1_1:56212371-56212390 Msa0030160:intron 50.0%
TACAGCCATTGTGTCCTCCA+TGG + chr1_1:56212379-56212398 None:intergenic 50.0%
TTGGTCAGAAGCAGCAGCAT+TGG - chr1_1:56212413-56212432 Msa0030160:intron 50.0%
CGTAGTCTTTCATTGCGACG+TGG - chr1_1:56212868-56212887 Msa0030160:CDS 50.0%
TGGGATTGAAGAGGGGTCCT+TGG - chr1_1:56209314-56209333 Msa0030160:three_prime_UTR 55.0%
! GATTAAAGTGGTGGGGGGCT+AGG - chr1_1:56210238-56210257 Msa0030160:intron 55.0%
ATCTGCCACAGAATGCCACG+TGG + chr1_1:56210877-56210896 None:intergenic 55.0%
GAGGGGTCCTTGGTCTCTTG+AGG - chr1_1:56209324-56209343 Msa0030160:three_prime_UTR 60.0%
TGCCACAGAATGCCACGTGG+CGG + chr1_1:56210874-56210893 None:intergenic 60.0%
TGGGTACGGTCTGTCTGAGC+AGG - chr1_1:56212722-56212741 Msa0030160:intron 60.0%
GGTCTGTCTGAGCAGGCCTT+GGG - chr1_1:56212729-56212748 Msa0030160:intron 60.0%
! GGAGGGCACGCCAATTGCCA+TGG + chr1_1:56209387-56209406 None:intergenic 65.0%
CGTGCCCTCCCAAAGCTAGC+AGG - chr1_1:56209397-56209416 Msa0030160:three_prime_UTR 65.0%
GGCGTGCAATTGGACCGCAC+AGG + chr1_1:56210853-56210872 None:intergenic 65.0%
TCCAATTGCACGCCGCCACG+TGG - chr1_1:56210859-56210878 Msa0030160:intron 65.0%
CGGTCTGTCTGAGCAGGCCT+TGG - chr1_1:56212728-56212747 Msa0030160:intron 65.0%
GCCACGTGGCGGCGTGCAAT+TGG + chr1_1:56210863-56210882 None:intergenic 70.0%
CGCCGCCACGTGGCATTCTG+TGG - chr1_1:56210869-56210888 Msa0030160:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 56209115 56213144 56209115 ID=Msa0030160;Name=Msa0030160
chr1_1 mRNA 56209115 56213144 56209115 ID=Msa0030160-mRNA-1;Parent=Msa0030160;Name=Msa0030160-mRNA-1;_AED=0.12;_eAED=0.12;_QI=171|1|1|1|1|1|3|515|260
chr1_1 exon 56209115 56210149 56209115 ID=Msa0030160-mRNA-1:exon:16797;Parent=Msa0030160-mRNA-1
chr1_1 exon 56212214 56212343 56212214 ID=Msa0030160-mRNA-1:exon:16796;Parent=Msa0030160-mRNA-1
chr1_1 exon 56212841 56213144 56212841 ID=Msa0030160-mRNA-1:exon:16795;Parent=Msa0030160-mRNA-1
chr1_1 five_prime_UTR 56212974 56213144 56212974 ID=Msa0030160-mRNA-1:five_prime_utr;Parent=Msa0030160-mRNA-1
chr1_1 CDS 56212841 56212973 56212841 ID=Msa0030160-mRNA-1:cds;Parent=Msa0030160-mRNA-1
chr1_1 CDS 56212214 56212343 56212214 ID=Msa0030160-mRNA-1:cds;Parent=Msa0030160-mRNA-1
chr1_1 CDS 56209630 56210149 56209630 ID=Msa0030160-mRNA-1:cds;Parent=Msa0030160-mRNA-1
chr1_1 three_prime_UTR 56209115 56209629 56209115 ID=Msa0030160-mRNA-1:three_prime_utr;Parent=Msa0030160-mRNA-1
Gene Sequence

>Msa0030160

ATGGTAAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAGGGGTCCTTGGTCTCTTGAGGAAGATGAAATCCTTACATCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAGCTAGCAGGCTTGTTAAGGTGTGGGAAAAGCTGCAGACTTAGGTGGATTAACTATTTGAGACCAGATATCAAGAGAGGAAATTTCACAAATGAAGAAGAGGAAAATATCATTAAGCTACATGAAATGCTTGGAAACAGGTGGTCGGCAATTGCAGCAAAATTACCAGGAAGAACGGACAATGAAATAAAAAATGTGTGGCACACACATTTGAAGAAGAAGCTAAACCAAACAAACTCGGAAACAAAGAAAAGGGTGATCTCAAAACCAAAAATCAAACGTTCTGATTCAAATTCAAGCACAATAACACAATCAGAATCAGCATCTGCATGCACTACAAGTTCTAGTGATTTTTCATCTGTCACTATTGGTGAAAGAAAAGATATAAAAAGTGAAGACATTGAGTCCATGGAGGACACAATGGCTGTAATTGATGAGAGTTTTTGGTCAGAAGCAGCAGCATTGGATGAAACTTCAACTGATATGAAATCAAGTTCTCCATTGACAATCTCAAATGAAATGTTGCCACTTCAATACCCTGATGAAATTCTTCCAGAGAGTACTCATGAAGATTATAATTCTAACTTGGATGATGGCATGGATTTTTGGTATGATATATTTATCAGGACTGGAGATCAAATAGAATTGCCTGAGTTTTGA
Protein sequence

>Msa0030160

MVRAPCCEKMGLKRGPWSLEEDEILTSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEENIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLNQTNSETKKRVISKPKIKRSDSNSSTITQSESASACTTSSSDFSSVTIGERKDIKSEDIESMEDTMAVIDESFWSEAAALDETSTDMKSSSPLTISNEMLPLQYPDEILPESTHEDYNSNLDDGMDFWYDIFIRTGDQIELPEF*