Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180110 | XP_013469883.1 | 95.588 | 68 | 3 | 0 | 1 | 68 | 1 | 68 | 2.84e-36 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180110 | sp|Q8L9A9|XTH8_ARATH | 62.712 | 59 | 19 | 1 | 10 | 68 | 16 | 71 | 8.82e-17 | 75.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180110 | A0A072VQK1 | 95.588 | 68 | 3 | 0 | 1 | 68 | 1 | 68 | 1.36e-36 | 133 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0180110 | Msa0184500 | 0.813935 | 1.989127e-51 | -8.615850e-47 |
| Msa0180110 | Msa1145300 | 0.807416 | 5.108601e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180110 | MtrunA17_Chr1g0206081 | 95.588 | 68 | 3 | 0 | 1 | 68 | 1 | 68 | 2.61e-40 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180110 | AT1G11545.1 | 62.712 | 59 | 19 | 1 | 10 | 68 | 16 | 71 | 8.97e-18 | 75.1 |
Find 26 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAGGGATTCTCTGTTTC+TGG | 0.113420 | 1_4:-67891104 | None:intergenic |
| AAAGGACCCTCCATCCATTT+TGG | 0.172552 | 1_4:-67891154 | None:intergenic |
| TTTGGGTAGGAGGAGAATTT+TGG | 0.254879 | 1_4:-67891136 | None:intergenic |
| AATTCTCCTCCTACCCAAAA+TGG | 0.278749 | 1_4:+67891140 | Msa0180110:exon |
| AGCAGAAGCAGCTATGTCTA+AGG | 0.356338 | 1_4:+67891233 | Msa0180110:CDS |
| ATGATAATAAGCAGCTACTA+TGG | 0.378445 | 1_4:-67891208 | None:intergenic |
| GGATCTCTGAACCCGAGGTT+TGG | 0.394261 | 1_4:-67891083 | None:intergenic |
| CATCTGTAGAGGTAGTAAAA+TGG | 0.396419 | 1_4:-67891296 | None:intergenic |
| AAGAATGGAAAATGAAGAAA+AGG | 0.445067 | 1_4:-67891172 | None:intergenic |
| ACAGATCTGGTATCTCTCAT+TGG | 0.481046 | 1_4:+67891320 | Msa0180110:CDS |
| TTATTGAACTTCCAAACCTC+GGG | 0.499927 | 1_4:+67891072 | Msa0180110:five_prime_UTR |
| GGCTGCAAGGAAAAGAAGAA+TGG | 0.506963 | 1_4:-67891187 | None:intergenic |
| GTCACGATGTTATAAGTGAA+TGG | 0.513067 | 1_4:+67890936 | None:intergenic |
| CCTCTACAGATGGACAGATC+TGG | 0.542190 | 1_4:+67891307 | Msa0180110:CDS |
| TATTAAACAACTAAACAAAG+TGG | 0.542281 | 1_4:+67890989 | Msa0180110:five_prime_UTR |
| TTTATTGAACTTCCAAACCT+CGG | 0.551560 | 1_4:+67891071 | Msa0180110:five_prime_UTR |
| TCCTACCCAAAATGGATGGA+GGG | 0.570885 | 1_4:+67891148 | Msa0180110:exon |
| GCAGAAGCAGCTATGTCTAA+GGG | 0.571565 | 1_4:+67891234 | Msa0180110:CDS |
| CTCCTACCCAAAATGGATGG+AGG | 0.581100 | 1_4:+67891147 | Msa0180110:exon |
| CTCCTCCTACCCAAAATGGA+TGG | 0.582425 | 1_4:+67891144 | Msa0180110:exon |
| TTGTTTAATAAATTTGCATG+TGG | 0.585102 | 1_4:-67890976 | None:intergenic |
| CTCTCATTGGACAATGACAC+AGG | 0.607838 | 1_4:+67891333 | Msa0180110:CDS |
| AAGCAGCTACTATGGCTGCA+AGG | 0.616062 | 1_4:-67891200 | None:intergenic |
| CCAGATCTGTCCATCTGTAG+AGG | 0.619087 | 1_4:-67891307 | None:intergenic |
| AAGACAACTTCAGCATAATG+TGG | 0.628622 | 1_4:+67891265 | Msa0180110:CDS |
| TTTCTGGATCTCTGAACCCG+AGG | 0.632414 | 1_4:-67891088 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCGATAGAATTAATTTT+GGG | + | chr1_4:67891640-67891659 | Msa0180110:intron | 15.0% |
| !! | TTGTTTAATAAATTTGCATG+TGG | - | chr1_4:67890979-67890998 | None:intergenic | 20.0% |
| !! | TATTAAACAACTAAACAAAG+TGG | + | chr1_4:67890989-67891008 | Msa0180110:five_prime_UTR | 20.0% |
| !!! | AAATACTTTAAGAGTTTGTT+CGG | + | chr1_4:67891467-67891486 | Msa0180110:intron | 20.0% |
| !!! | GATTTACATAAACTTACTTT+TGG | + | chr1_4:67891573-67891592 | Msa0180110:intron | 20.0% |
| !!! | CTTTTCGATAGAATTAATTT+TGG | + | chr1_4:67891639-67891658 | Msa0180110:intron | 20.0% |
| !!! | AAAGTTGAGAGTATAATTTA+TGG | + | chr1_4:67891678-67891697 | Msa0180110:intron | 20.0% |
| !!! | AACATTCAATGCTTTAAAAA+TGG | - | chr1_4:67891777-67891796 | None:intergenic | 20.0% |
| !! | ACATTTGTTTGAATCAAATA+TGG | - | chr1_4:67892112-67892131 | None:intergenic | 20.0% |
| !!! | TTGATGTCATTTTTTTACTT+GGG | - | chr1_4:67892287-67892306 | None:intergenic | 20.0% |
| !!! | TTTGATGTCATTTTTTTACT+TGG | - | chr1_4:67892288-67892307 | None:intergenic | 20.0% |
| !!! | AGTTTAAGACTTTTTGTTTT+TGG | + | chr1_4:67892403-67892422 | Msa0180110:intron | 20.0% |
| !! | AGTAAAATGTATGTACAATA+TGG | + | chr1_4:67892479-67892498 | Msa0180110:intron | 20.0% |
| !! | ATGAATATGATTATGTCATA+TGG | + | chr1_4:67892537-67892556 | Msa0180110:intron | 20.0% |
| !! | TAAAAAGACCTTATATTTCA+AGG | + | chr1_4:67892587-67892606 | Msa0180110:intron | 20.0% |
| !! | AAAAAGACCTTATATTTCAA+GGG | + | chr1_4:67892588-67892607 | Msa0180110:intron | 20.0% |
| !! | ACCTTAATTCAAGATATTTA+TGG | + | chr1_4:67892628-67892647 | Msa0180110:intron | 20.0% |
| !! | TCCATAAATATCTTGAATTA+AGG | - | chr1_4:67892632-67892651 | None:intergenic | 20.0% |
| !!! | GTAAACTTCATTTGTTATAT+GGG | - | chr1_4:67893232-67893251 | None:intergenic | 20.0% |
| !!! | TGTAAACTTCATTTGTTATA+TGG | - | chr1_4:67893233-67893252 | None:intergenic | 20.0% |
| !! | TATAACAAATGAAGTTTACA+TGG | + | chr1_4:67893233-67893252 | Msa0180110:intron | 20.0% |
| !! | TAATAAAAAAAAAACTCACG+GGG | - | chr1_4:67893457-67893476 | None:intergenic | 20.0% |
| !! | CTAATAAAAAAAAAACTCAC+GGG | - | chr1_4:67893458-67893477 | None:intergenic | 20.0% |
| !! | CCTAATAAAAAAAAAACTCA+CGG | - | chr1_4:67893459-67893478 | None:intergenic | 20.0% |
| !!! | CGTGAGTTTTTTTTTTATTA+GGG | + | chr1_4:67893457-67893476 | Msa0180110:intron | 20.0% |
| !!! | AGTTTTTTTTTTATTAGGGA+TGG | + | chr1_4:67893461-67893480 | Msa0180110:intron | 20.0% |
| !!! | GTTTTTTTTTTATTAGGGAT+GGG | + | chr1_4:67893462-67893481 | Msa0180110:intron | 20.0% |
| ! | AAGAATGGAAAATGAAGAAA+AGG | - | chr1_4:67891175-67891194 | None:intergenic | 25.0% |
| !!! | AAACTTACTTTTGGATAGTT+TGG | + | chr1_4:67891582-67891601 | Msa0180110:intron | 25.0% |
| !!! | ATAGAATTAATTTTGGGACT+AGG | + | chr1_4:67891646-67891665 | Msa0180110:intron | 25.0% |
| ! | ACAAAACAAAGATACAGATT+TGG | + | chr1_4:67891817-67891836 | Msa0180110:intron | 25.0% |
| ! | GGATTCATAAAAACACAAAA+AGG | - | chr1_4:67891975-67891994 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTATGAATCCAAT+TGG | + | chr1_4:67891978-67891997 | Msa0180110:intron | 25.0% |
| !!! | TGAACTTGATTTTGAGTTTT+TGG | + | chr1_4:67892069-67892088 | Msa0180110:intron | 25.0% |
| !!! | GAACTTGATTTTGAGTTTTT+GGG | + | chr1_4:67892070-67892089 | Msa0180110:intron | 25.0% |
| ! | AAACAAATGTGTACAAGAAT+GGG | + | chr1_4:67892122-67892141 | Msa0180110:intron | 25.0% |
| ! | CAATCTTATATTGCTCTTAT+TGG | + | chr1_4:67892244-67892263 | Msa0180110:intron | 25.0% |
| ! | TGTTTGCAAATATGGTAATA+GGG | + | chr1_4:67892309-67892328 | Msa0180110:intron | 25.0% |
| !!! | TTAAGACTTTTTGTTTTTGG+TGG | + | chr1_4:67892406-67892425 | Msa0180110:intron | 25.0% |
| ! | AAAATGTATGTACAATATGG+TGG | + | chr1_4:67892482-67892501 | Msa0180110:intron | 25.0% |
| ! | CTAGCAATGATAATTAAACT+AGG | - | chr1_4:67892509-67892528 | None:intergenic | 25.0% |
| !!! | CCGTGAGTTTTTTTTTTATT+AGG | + | chr1_4:67893456-67893475 | Msa0180110:intron | 25.0% |
| TTTATTGAACTTCCAAACCT+CGG | + | chr1_4:67891071-67891090 | Msa0180110:five_prime_UTR | 30.0% | |
| !!! | AGAATTTTGGTTCAAGAGAA+TGG | - | chr1_4:67891126-67891145 | None:intergenic | 30.0% |
| ATGATAATAAGCAGCTACTA+TGG | - | chr1_4:67891211-67891230 | None:intergenic | 30.0% | |
| GAGTAAGTCAAACATTATTC+TGG | + | chr1_4:67891714-67891733 | Msa0180110:intron | 30.0% | |
| AAGTCAAACATTATTCTGGA+AGG | + | chr1_4:67891718-67891737 | Msa0180110:intron | 30.0% | |
| !! | TAAAGCATTGAATGTTTGAC+AGG | + | chr1_4:67891781-67891800 | Msa0180110:intron | 30.0% |
| AACAAAGATACAGATTTGGA+TGG | + | chr1_4:67891821-67891840 | Msa0180110:intron | 30.0% | |
| ! | GTTTTTATGAATCCAATTGG+TGG | + | chr1_4:67891981-67892000 | Msa0180110:intron | 30.0% |
| AAATCAAGTTCATCTCTTTC+TGG | - | chr1_4:67892061-67892080 | None:intergenic | 30.0% | |
| CAAACAAATGTGTACAAGAA+TGG | + | chr1_4:67892121-67892140 | Msa0180110:intron | 30.0% | |
| GTTATTCCAGAGAATAGAAT+AGG | - | chr1_4:67892206-67892225 | None:intergenic | 30.0% | |
| AAGATTGAACTTACACTATC+TGG | - | chr1_4:67892231-67892250 | None:intergenic | 30.0% | |
| ! | CATCAAAGTGTTTGCAAATA+TGG | + | chr1_4:67892301-67892320 | Msa0180110:intron | 30.0% |
| GTGTTTGCAAATATGGTAAT+AGG | + | chr1_4:67892308-67892327 | Msa0180110:intron | 30.0% | |
| ! | ACACATCTTTATGCTTTTGT+CGG | + | chr1_4:67892342-67892361 | Msa0180110:intron | 30.0% |
| TTGACAATTGAGAAAAGAGA+AGG | - | chr1_4:67892377-67892396 | None:intergenic | 30.0% | |
| TTTGGTGGAAATAATAGTGT+AGG | + | chr1_4:67892421-67892440 | Msa0180110:intron | 30.0% | |
| ATCTGTACCCTTGAAATATA+AGG | - | chr1_4:67892598-67892617 | None:intergenic | 30.0% | |
| ACTGAATGTTGCAAATGAAT+TGG | + | chr1_4:67892667-67892686 | Msa0180110:intron | 30.0% | |
| TCATTTGGGAAGAAATTGTT+TGG | - | chr1_4:67892748-67892767 | None:intergenic | 30.0% | |
| !! | AGTACATTGGTTTCTCATTT+GGG | - | chr1_4:67892762-67892781 | None:intergenic | 30.0% |
| !! | AAGTACATTGGTTTCTCATT+TGG | - | chr1_4:67892763-67892782 | None:intergenic | 30.0% |
| ACACTTGAAAACAAGTACAT+TGG | - | chr1_4:67892775-67892794 | None:intergenic | 30.0% | |
| !!! | TGTACTTGTTTTCAAGTGTA+TGG | + | chr1_4:67892776-67892795 | Msa0180110:intron | 30.0% |
| ATCAACACTAAAGTCTTTGT+AGG | - | chr1_4:67892872-67892891 | None:intergenic | 30.0% | |
| GTTGAAACACATTTAGGAAA+TGG | - | chr1_4:67892913-67892932 | None:intergenic | 30.0% | |
| TTTCAACCACAACCAAAAAT+TGG | + | chr1_4:67892926-67892945 | Msa0180110:intron | 30.0% | |
| ! | ATATTGATCCCACCAATTTT+TGG | - | chr1_4:67892941-67892960 | None:intergenic | 30.0% |
| !! | ATCAGAAAATGGATTATGCT+TGG | + | chr1_4:67892983-67893002 | Msa0180110:intron | 30.0% |
| !! | TCAGAAAATGGATTATGCTT+GGG | + | chr1_4:67892984-67893003 | Msa0180110:intron | 30.0% |
| !!! | CGTCAATCTCTATCTTTTTT+TGG | + | chr1_4:67893269-67893288 | Msa0180110:intron | 30.0% |
| !!! | CAATCTCTATCTTTTTTTGG+TGG | + | chr1_4:67893272-67893291 | Msa0180110:intron | 30.0% |
| TGCATAATATATGCAAGATC+CGG | - | chr1_4:67893315-67893334 | None:intergenic | 30.0% | |
| GATAGAGATTTACATGTTCA+TGG | - | chr1_4:67893342-67893361 | None:intergenic | 30.0% | |
| CTATCTATGAACATGTTGAA+CGG | + | chr1_4:67893419-67893438 | Msa0180110:intron | 30.0% | |
| ! | TTTTATTAGGGATGGGTAAT+AGG | + | chr1_4:67893469-67893488 | Msa0180110:intron | 30.0% |
| TTATTGAACTTCCAAACCTC+GGG | + | chr1_4:67891072-67891091 | Msa0180110:five_prime_UTR | 35.0% | |
| !!! | TTTTGGTTCAAGAGAATGGA+GGG | - | chr1_4:67891122-67891141 | None:intergenic | 35.0% |
| !!! | ATTTTGGTTCAAGAGAATGG+AGG | - | chr1_4:67891123-67891142 | None:intergenic | 35.0% |
| AAGACAACTTCAGCATAATG+TGG | + | chr1_4:67891265-67891284 | Msa0180110:CDS | 35.0% | |
| CATCTGTAGAGGTAGTAAAA+TGG | - | chr1_4:67891299-67891318 | None:intergenic | 35.0% | |
| ! | CATTTTACTACCTCTACAGA+TGG | + | chr1_4:67891297-67891316 | Msa0180110:CDS | 35.0% |
| GCATTAAAGTTGAGATTCTG+AGG | + | chr1_4:67891751-67891770 | Msa0180110:intron | 35.0% | |
| ATTGAATGTTTGACAGGATG+TGG | + | chr1_4:67891787-67891806 | Msa0180110:intron | 35.0% | |
| TTGAATGTTTGACAGGATGT+GGG | + | chr1_4:67891788-67891807 | Msa0180110:intron | 35.0% | |
| GTTCAGTATGAAGCTGAAAT+TGG | + | chr1_4:67891843-67891862 | Msa0180110:intron | 35.0% | |
| AGTATGAAGCTGAAATTGGT+AGG | + | chr1_4:67891847-67891866 | Msa0180110:intron | 35.0% | |
| ! | GTGGAGTGTTAACAAGAATA+GGG | + | chr1_4:67892000-67892019 | Msa0180110:intron | 35.0% |
| ! | TGGAGTGTTAACAAGAATAG+GGG | + | chr1_4:67892001-67892020 | Msa0180110:intron | 35.0% |
| TTGCAGATGTGTACAGAAAA+TGG | + | chr1_4:67892028-67892047 | Msa0180110:intron | 35.0% | |
| ATCACACCTATTCTATTCTC+TGG | + | chr1_4:67892197-67892216 | Msa0180110:intron | 35.0% | |
| ATTGAACTTACACTATCTGG+TGG | - | chr1_4:67892228-67892247 | None:intergenic | 35.0% | |
| ATATGGTAATAGGGCTAAGT+TGG | + | chr1_4:67892318-67892337 | Msa0180110:intron | 35.0% | |
| ! | TTTATGCTTTTGTCGGTGTA+AGG | + | chr1_4:67892349-67892368 | Msa0180110:intron | 35.0% |
| ! | TTATGCTTTTGTCGGTGTAA+GGG | + | chr1_4:67892350-67892369 | Msa0180110:intron | 35.0% |
| ATGTCATATGGACAGTAACA+AGG | + | chr1_4:67892549-67892568 | Msa0180110:intron | 35.0% | |
| !!! | AATTGGAAGCAGGTTTTTTG+TGG | + | chr1_4:67892684-67892703 | Msa0180110:intron | 35.0% |
| TTGTGGATAGAGTTCCAATA+AGG | + | chr1_4:67892701-67892720 | Msa0180110:intron | 35.0% | |
| TGTGGATAGAGTTCCAATAA+GGG | + | chr1_4:67892702-67892721 | Msa0180110:intron | 35.0% | |
| TTGTTCTTGAACACCCTTAT+TGG | - | chr1_4:67892718-67892737 | None:intergenic | 35.0% | |
| TGTATGGAATGCAGATGATT+GGG | + | chr1_4:67892792-67892811 | Msa0180110:intron | 35.0% | |
| GTGGACTTGAAAAAACAAAC+TGG | + | chr1_4:67892824-67892843 | Msa0180110:intron | 35.0% | |
| TCTTTGTAGGATGACACAAA+TGG | - | chr1_4:67892859-67892878 | None:intergenic | 35.0% | |
| !! | TTAGTGTTGATGCTTGTCAA+TGG | + | chr1_4:67892881-67892900 | Msa0180110:intron | 35.0% |
| !! | TAGTGTTGATGCTTGTCAAT+GGG | + | chr1_4:67892882-67892901 | Msa0180110:intron | 35.0% |
| GTTGTGGTTGAAACACATTT+AGG | - | chr1_4:67892919-67892938 | None:intergenic | 35.0% | |
| AACCACAACCAAAAATTGGT+GGG | + | chr1_4:67892930-67892949 | Msa0180110:intron | 35.0% | |
| ! | TCTTTCAGGTGATCAGAAAA+TGG | + | chr1_4:67892972-67892991 | Msa0180110:intron | 35.0% |
| TGCAATAGTCATAGATGACA+AGG | - | chr1_4:67893020-67893039 | None:intergenic | 35.0% | |
| !!! | TCTCTATCTTTTTTTGGTGG+TGG | + | chr1_4:67893275-67893294 | Msa0180110:intron | 35.0% |
| ! | TTTGGGTAGGAGGAGAATTT+TGG | - | chr1_4:67891139-67891158 | None:intergenic | 40.0% |
| AATTCTCCTCCTACCCAAAA+TGG | + | chr1_4:67891140-67891159 | Msa0180110:exon | 40.0% | |
| ACAGATCTGGTATCTCTCAT+TGG | + | chr1_4:67891320-67891339 | Msa0180110:CDS | 40.0% | |
| ATGAAGCTGAAATTGGTAGG+AGG | + | chr1_4:67891850-67891869 | Msa0180110:intron | 40.0% | |
| CTTGTTAACACTCCACCAAT+TGG | - | chr1_4:67891996-67892015 | None:intergenic | 40.0% | |
| ! | GGTGGAGTGTTAACAAGAAT+AGG | + | chr1_4:67891999-67892018 | Msa0180110:intron | 40.0% |
| ATGTGTACAGAAAATGGTGC+AGG | + | chr1_4:67892034-67892053 | Msa0180110:intron | 40.0% | |
| TGTGTACAGAAAATGGTGCA+GGG | + | chr1_4:67892035-67892054 | Msa0180110:intron | 40.0% | |
| !! | GAGTTTTTGGGAAACAGAAC+AGG | + | chr1_4:67892082-67892101 | Msa0180110:intron | 40.0% |
| AATGTGTACAAGAATGGGAC+CGG | + | chr1_4:67892127-67892146 | Msa0180110:intron | 40.0% | |
| ATGTCTCATCTCACGATTAC+CGG | - | chr1_4:67892149-67892168 | None:intergenic | 40.0% | |
| GTGAGATGAGACATATGCTT+TGG | + | chr1_4:67892155-67892174 | Msa0180110:intron | 40.0% | |
| TAGTGTAGGACAAGATTGTG+AGG | + | chr1_4:67892435-67892454 | Msa0180110:intron | 40.0% | |
| GTTGCAAATGAATTGGAAGC+AGG | + | chr1_4:67892674-67892693 | Msa0180110:intron | 40.0% | |
| GTGTATGGAATGCAGATGAT+TGG | + | chr1_4:67892791-67892810 | Msa0180110:intron | 40.0% | |
| !!! | TTTTTCAAGTCCACCTCTTG+TGG | - | chr1_4:67892818-67892837 | None:intergenic | 40.0% |
| CAACCACAACCAAAAATTGG+TGG | + | chr1_4:67892929-67892948 | Msa0180110:intron | 40.0% | |
| !!! | ATCCCACCAATTTTTGGTTG+TGG | - | chr1_4:67892935-67892954 | None:intergenic | 40.0% |
| TATGATGCTTGGCATCTTTC+AGG | + | chr1_4:67892958-67892977 | Msa0180110:intron | 40.0% | |
| !! | AAGAGTGCTCATTAAGTCCA+TGG | + | chr1_4:67893070-67893089 | Msa0180110:intron | 40.0% |
| ! | AGAGTGCTCATTAAGTCCAT+GGG | + | chr1_4:67893071-67893090 | Msa0180110:intron | 40.0% |
| TCCATGGGAGTAATGTATCA+TGG | + | chr1_4:67893086-67893105 | Msa0180110:intron | 40.0% | |
| CCATGGGAGTAATGTATCAT+GGG | + | chr1_4:67893087-67893106 | Msa0180110:intron | 40.0% | |
| CATGGGAGTAATGTATCATG+GGG | + | chr1_4:67893088-67893107 | Msa0180110:intron | 40.0% | |
| !!! | TATCTTTTTTTGGTGGTGGC+CGG | + | chr1_4:67893279-67893298 | Msa0180110:intron | 40.0% |
| ATGGAGGGATTCTCTGTTTC+TGG | - | chr1_4:67891107-67891126 | None:intergenic | 45.0% | |
| TCCTACCCAAAATGGATGGA+GGG | + | chr1_4:67891148-67891167 | Msa0180110:exon | 45.0% | |
| ! | AAGGACCCTCCATCCATTTT+GGG | - | chr1_4:67891156-67891175 | None:intergenic | 45.0% |
| ! | AAAGGACCCTCCATCCATTT+TGG | - | chr1_4:67891157-67891176 | None:intergenic | 45.0% |
| GGCTGCAAGGAAAAGAAGAA+TGG | - | chr1_4:67891190-67891209 | None:intergenic | 45.0% | |
| AGCAGAAGCAGCTATGTCTA+AGG | + | chr1_4:67891233-67891252 | Msa0180110:CDS | 45.0% | |
| GCAGAAGCAGCTATGTCTAA+GGG | + | chr1_4:67891234-67891253 | Msa0180110:CDS | 45.0% | |
| CTCTCATTGGACAATGACAC+AGG | + | chr1_4:67891333-67891352 | Msa0180110:CDS | 45.0% | |
| TAGGTGTGATAGTCCTCAGT+GGG | - | chr1_4:67892187-67892206 | None:intergenic | 45.0% | |
| ATAGGTGTGATAGTCCTCAG+TGG | - | chr1_4:67892188-67892207 | None:intergenic | 45.0% | |
| GGTGGGATCAATATGATGCT+TGG | + | chr1_4:67892947-67892966 | Msa0180110:intron | 45.0% | |
| GGACTTAATGAGCACTCTTC+AGG | - | chr1_4:67893069-67893088 | None:intergenic | 45.0% | |
| CCCATGATACATTACTCCCA+TGG | - | chr1_4:67893090-67893109 | None:intergenic | 45.0% | |
| CTAACTGAGCTAAGATCACG+AGG | + | chr1_4:67893384-67893403 | Msa0180110:intron | 45.0% | |
| TTTCTGGATCTCTGAACCCG+AGG | - | chr1_4:67891091-67891110 | None:intergenic | 50.0% | |
| CTCCTCCTACCCAAAATGGA+TGG | + | chr1_4:67891144-67891163 | Msa0180110:exon | 50.0% | |
| !! | CTCCATCCATTTTGGGTAGG+AGG | - | chr1_4:67891149-67891168 | None:intergenic | 50.0% |
| CTCCTACCCAAAATGGATGG+AGG | + | chr1_4:67891147-67891166 | Msa0180110:exon | 50.0% | |
| !! | ACCCTCCATCCATTTTGGGT+AGG | - | chr1_4:67891152-67891171 | None:intergenic | 50.0% |
| AAGCAGCTACTATGGCTGCA+AGG | - | chr1_4:67891203-67891222 | None:intergenic | 50.0% | |
| CCAGATCTGTCCATCTGTAG+AGG | - | chr1_4:67891310-67891329 | None:intergenic | 50.0% | |
| CCTCTACAGATGGACAGATC+TGG | + | chr1_4:67891307-67891326 | Msa0180110:CDS | 50.0% | |
| TTGGTAGGAGGTGATTCTGC+TGG | + | chr1_4:67891862-67891881 | Msa0180110:intron | 50.0% | |
| !! | GCTTTGGTTTGATCCCACTG+AGG | + | chr1_4:67892171-67892190 | Msa0180110:intron | 50.0% |
| GAGCACTCTTCAGGCAAAGT+TGG | - | chr1_4:67893060-67893079 | None:intergenic | 50.0% | |
| AAGATCCGGAGTTCGAACAC+CGG | - | chr1_4:67893301-67893320 | None:intergenic | 50.0% | |
| GGATCTCTGAACCCGAGGTT+TGG | - | chr1_4:67891086-67891105 | None:intergenic | 55.0% | |
| GCAGATGATTGGGCCACAAG+AGG | + | chr1_4:67892802-67892821 | Msa0180110:intron | 55.0% | |
| GATGATTGGGCCACAAGAGG+TGG | + | chr1_4:67892805-67892824 | Msa0180110:intron | 55.0% | |
| GGTGGCCGGTGTTCGAACTC+CGG | + | chr1_4:67893293-67893312 | Msa0180110:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 67890938 | 67893494 | 67890938 | ID=Msa0180110;Name=Msa0180110 |
| chr1_4 | mRNA | 67890938 | 67893494 | 67890938 | ID=Msa0180110-mRNA-1;Parent=Msa0180110;Name=Msa0180110-mRNA-1;_AED=0.41;_eAED=0.41;_QI=221|0|0.5|0.5|0|0.5|2|0|70 |
| chr1_4 | exon | 67890938 | 67891354 | 67890938 | ID=Msa0180110-mRNA-1:exon:22404;Parent=Msa0180110-mRNA-1 |
| chr1_4 | exon | 67893478 | 67893494 | 67893478 | ID=Msa0180110-mRNA-1:exon:22405;Parent=Msa0180110-mRNA-1 |
| chr1_4 | five_prime_UTR | 67890938 | 67891158 | 67890938 | ID=Msa0180110-mRNA-1:five_prime_utr;Parent=Msa0180110-mRNA-1 |
| chr1_4 | CDS | 67891159 | 67891354 | 67891159 | ID=Msa0180110-mRNA-1:cds;Parent=Msa0180110-mRNA-1 |
| chr1_4 | CDS | 67893478 | 67893494 | 67893478 | ID=Msa0180110-mRNA-1:cds;Parent=Msa0180110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
