AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0181030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181030 MtrunA17_Chr1g0203751 94.845 291 15 0 1 291 1 291 0.0 547
Msa0181030 MtrunA17_Chr6g0472801 72.792 283 77 0 9 291 3 285 2.16e-157 440
Msa0181030 MtrunA17_Chr8g0350401 58.803 284 106 3 1 279 1 278 1.92e-122 352
Msa0181030 MtrunA17_Chr4g0057281 61.154 260 100 1 28 286 19 278 1.82e-118 341
Msa0181030 MtrunA17_Chr5g0397981 54.225 284 125 3 4 286 14 293 1.04e-110 322
Msa0181030 MtrunA17_Chr7g0265551 52.013 298 123 2 1 287 73 361 9.35e-109 320
Msa0181030 MtrunA17_Chr7g0272101 22.711 273 179 6 31 286 4 261 6.39e-25 100
Msa0181030 MtrunA17_Chr7g0272091 25.000 284 185 6 23 281 2 282 8.69e-24 97.8
Msa0181030 MtrunA17_Chr1g0189671 28.755 233 150 4 26 257 2 219 1.39e-23 97.1
Msa0181030 MtrunA17_Chr1g0203281 28.421 285 164 8 26 283 2 273 2.18e-23 96.7
Msa0181030 MtrunA17_Chr1g0189591 37.762 143 86 2 30 169 15 157 1.30e-22 95.1
Msa0181030 MtrunA17_Chr4g0010881 23.735 257 174 6 31 285 4 240 1.70e-22 93.6
Msa0181030 MtrunA17_Chr1g0189821 36.620 142 88 2 30 169 6 147 4.14e-22 93.2
Msa0181030 MtrunA17_Chr1g0189611 34.932 146 93 2 26 169 2 147 2.84e-21 90.9
Msa0181030 MtrunA17_Chr1g0192371 34.266 143 92 2 31 171 11 153 4.84e-20 87.8
Msa0181030 MtrunA17_Chr1g0203331 37.984 129 77 2 45 172 6 132 3.75e-19 84.3
Msa0181030 MtrunA17_Chr1g0189751 34.667 150 95 2 26 174 2 149 2.76e-18 83.2
Msa0181030 MtrunA17_Chr1g0189721 32.530 166 105 4 26 186 2 165 3.47e-18 82.4
Msa0181030 MtrunA17_Chr3g0097191 28.674 279 152 9 28 281 10 266 3.96e-18 82.0
Msa0181030 MtrunA17_Chr1g0189641 27.426 237 151 5 26 255 2 224 3.31e-17 79.7
Msa0181030 MtrunA17_Chr1g0189621 32.877 146 94 3 30 174 6 148 6.33e-17 78.6
Msa0181030 MtrunA17_Chr1g0189781 32.639 144 94 2 31 171 11 154 5.03e-15 73.6
Msa0181030 MtrunA17_Chr3g0095261 27.018 285 165 10 28 281 10 282 2.44e-14 71.6
Msa0181030 MtrunA17_Chr1g0190071 31.034 145 97 2 30 171 6 150 4.15e-14 71.2
Msa0181030 MtrunA17_Chr1g0189771 28.662 157 109 2 18 171 2 158 3.04e-13 66.6
Msa0181030 MtrunA17_Chr1g0189661 31.944 144 96 2 30 171 6 149 4.99e-13 68.2
Msa0181030 MtrunA17_Chr3g0078331 30.000 160 92 5 26 169 15 170 3.58e-11 62.8
Msa0181030 MtrunA17_Chr1g0189711 32.886 149 86 6 30 169 6 149 4.46e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181030 AT3G61060.1 59.574 282 110 3 1 281 1 279 1.92e-126 362
Msa0181030 AT3G61060.2 59.364 283 110 4 1 281 1 280 1.18e-124 357
Msa0181030 AT5G52120.1 55.019 269 115 1 27 289 20 288 1.82e-110 322
Msa0181030 AT1G12710.1 56.296 270 112 3 25 291 25 291 1.21e-104 306
Msa0181030 AT1G63090.1 54.104 268 121 2 25 291 23 289 1.63e-100 296
Msa0181030 AT3G53000.1 48.973 292 130 3 1 281 1 284 2.52e-97 288
Msa0181030 AT1G12710.2 48.718 312 112 4 25 291 25 333 1.30e-95 285
Msa0181030 AT1G09155.1 27.586 203 131 3 31 231 3 191 2.58e-21 91.7
Msa0181030 AT2G02360.1 37.681 138 80 2 33 169 19 151 2.74e-21 91.3
Msa0181030 AT2G02240.1 28.777 278 148 8 31 282 64 317 3.12e-19 86.3
Msa0181030 AT2G02230.1 32.278 158 99 3 15 171 21 171 5.00e-19 86.3
Msa0181030 AT5G24560.1 27.160 162 106 3 30 184 5 161 4.17e-18 80.9
Msa0181030 AT1G80110.1 25.746 268 174 7 28 282 1 256 2.72e-17 80.1
Msa0181030 AT2G02340.1 30.994 171 102 4 19 181 27 189 3.79e-17 80.5
Msa0181030 AT2G02310.1 35.878 131 78 2 30 159 47 172 1.50e-16 78.6
Msa0181030 AT2G02350.2 30.769 156 101 3 13 166 9 159 1.71e-16 78.6
Msa0181030 AT2G02250.1 29.714 175 113 4 2 171 18 187 4.74e-16 77.4
Msa0181030 AT1G56250.1 24.468 282 177 8 31 281 4 280 5.67e-15 73.9
Msa0181030 AT1G56240.1 22.603 292 170 6 31 281 4 280 6.01e-14 70.9
Msa0181030 AT2G02300.1 29.801 151 101 2 22 171 28 174 3.41e-11 63.2

Find 71 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTGCTTATAAATTTCT+TGG 0.233636 1_4:-69122270 Msa0181030:CDS
CTCAAACCCACCTAAAATAA+AGG 0.284259 1_4:+69119371 None:intergenic
TCCACCTGATATATGCAAAT+TGG 0.341137 1_4:-69122370 Msa0181030:CDS
CATAACTTTCAGACTCCAAT+TGG 0.346494 1_4:-69119845 Msa0181030:CDS
TTACCATGTTGGAGATTTCA+TGG 0.347440 1_4:-69119671 Msa0181030:CDS
AGATAGAATAGGTTAGAGAT+TGG 0.354650 1_4:+69122606 None:intergenic
ATGTGGTGGGTTGAAGTAAT+AGG 0.354758 1_4:-69119904 Msa0181030:CDS
TCAAAGTCTTTGAAGATAAC+AGG 0.357934 1_4:-69121968 Msa0181030:CDS
ATTTGCATGGGCCAGGGCAA+TGG 0.362661 1_4:-69119699 Msa0181030:CDS
AATAAAATGATTAGAGAAAA+GGG 0.385177 1_4:+69122561 None:intergenic
TGGATCAAGATGCATGAGTA+TGG 0.388988 1_4:+69122389 None:intergenic
CTAGCCAATTTGCATATATC+AGG 0.392374 1_4:+69122366 None:intergenic
GAATAAAATGATTAGAGAAA+AGG 0.394648 1_4:+69122560 None:intergenic
TTTGCATGGGCCAGGGCAAT+GGG 0.397867 1_4:-69119698 Msa0181030:CDS
GAGTGTTATTTGCATGGGCC+AGG 0.404946 1_4:-69119706 Msa0181030:CDS
GTACCACCGTCAAAGCGATT+AGG 0.408204 1_4:+69122192 None:intergenic
ATCTATGCAGAGGCCGCCTT+TGG 0.412675 1_4:+69119585 None:intergenic
GAATAGATGATAGAAGATAT+TGG 0.414837 1_4:-69121946 Msa0181030:CDS
GACATCTTTCTTAGTCATAG+TGG 0.416582 1_4:+69122233 None:intergenic
GAGAAAAGGGTTAGGTTCAA+AGG 0.433803 1_4:+69122574 None:intergenic
GGTAAAAGAGGAGATAGAAT+AGG 0.437367 1_4:+69122595 None:intergenic
ATCTCAGAGTGTTATTTGCA+TGG 0.460843 1_4:-69119712 Msa0181030:CDS
GTTAGGTTCAAAGGTAAAAG+AGG 0.466771 1_4:+69122583 None:intergenic
TCAAACCCACCTAAAATAAA+GGG 0.468506 1_4:+69119372 None:intergenic
TAGAATAGGTTAGAGATTGG+AGG 0.474821 1_4:+69122609 None:intergenic
AATTCATCATCATCAAGAAC+GGG 0.479897 1_4:-69122444 Msa0181030:CDS
AGTCTTTCTCTAAACACAGT+TGG 0.483039 1_4:+69119547 None:intergenic
ACGATGATCAAGTTCATGGC+TGG 0.486450 1_4:-69119786 Msa0181030:CDS
AATGATTAGAGAAAAGGGTT+AGG 0.488957 1_4:+69122566 None:intergenic
GGGAAAGTCATCAAAACGAT+TGG 0.489012 1_4:-69119824 Msa0181030:CDS
CTGATATATGCAAATTGGCT+AGG 0.492079 1_4:-69122365 Msa0181030:CDS
TCTCACCTGGATTCCTCAGT+TGG 0.494511 1_4:+69121914 None:intergenic
ACATTCCAACTGAGGAATCC+AGG 0.495554 1_4:-69121919 Msa0181030:intron
GTAGAGAGTTGGAATCTAAC+GGG 0.506240 1_4:+69119754 None:intergenic
TTTATATAGTTATATTAGAG+AGG 0.510678 1_4:-69119477 Msa0181030:three_prime_UTR
TGGTAATAAGCCCATTGCCC+TGG 0.511634 1_4:+69119688 None:intergenic
TGCAACGATGATCAAGTTCA+TGG 0.517273 1_4:-69119790 Msa0181030:CDS
AAAGTAAACTGCATACATAC+AGG 0.519497 1_4:+69119335 None:intergenic
ATAACTTTCAGACTCCAATT+GGG 0.520543 1_4:-69119844 Msa0181030:CDS
GGAAAGTCATCAAAACGATT+GGG 0.522230 1_4:-69119823 Msa0181030:CDS
TATTCACAGGTTCAAGAATG+TGG 0.529110 1_4:-69119941 Msa0181030:intron
CAATGGGCTTATTACCATGT+TGG 0.535550 1_4:-69119682 Msa0181030:CDS
TAATTCATCATCATCAAGAA+CGG 0.545437 1_4:-69122445 Msa0181030:CDS
CGATGATCAAGTTCATGGCT+GGG 0.545852 1_4:-69119785 Msa0181030:CDS
TGTCAACCTAATCGCTTTGA+CGG 0.551447 1_4:-69122198 Msa0181030:CDS
GCAAGAAACTTGTAGCATGA+TGG 0.553327 1_4:+69122285 None:intergenic
TCTCAGAGTGTTATTTGCAT+GGG 0.559048 1_4:-69119711 Msa0181030:CDS
GCCAATTTGCATATATCAGG+TGG 0.562917 1_4:+69122369 None:intergenic
GACCGTCCGATGTAGAGAGT+TGG 0.563295 1_4:+69119743 None:intergenic
ATATATACAGTTGTTATACA+AGG 0.566583 1_4:-69119304 None:intergenic
TGTAGAGAGTTGGAATCTAA+CGG 0.566747 1_4:+69119753 None:intergenic
CATATCTTCAACAAATGTGG+TGG 0.568286 1_4:-69119918 Msa0181030:CDS
TTTCAATTAATTCATTTATG+GGG 0.568667 1_4:-69122518 Msa0181030:exon
CTAGAGTTTGTATTCCCTGT+GGG 0.569667 1_4:-69119877 Msa0181030:CDS
TTATATAGTTATATTAGAGA+GGG 0.570374 1_4:-69119476 Msa0181030:three_prime_UTR
TGATATATGCAAATTGGCTA+GGG 0.577318 1_4:-69122364 Msa0181030:CDS
AGTGTTATTTGCATGGGCCA+GGG 0.596672 1_4:-69119705 Msa0181030:CDS
GTTATGCTGTAACTTCCCAC+AGG 0.602467 1_4:+69119862 None:intergenic
ATTGATTGTACTCATACCAA+AGG 0.615939 1_4:-69119601 Msa0181030:CDS
TTCCAACTCTCTACATCGGA+CGG 0.616192 1_4:-69119745 Msa0181030:CDS
CAACCTAATCGCTTTGACGG+TGG 0.616958 1_4:-69122195 Msa0181030:CDS
TTGGATTTACATTCCAACTG+AGG 0.622680 1_4:-69121927 Msa0181030:CDS
CAACCATGAAATCTCCAACA+TGG 0.639418 1_4:+69119668 None:intergenic
AAGAAGCTCTATGAAAAGCA+CGG 0.646856 1_4:+69122337 None:intergenic
GCTAGAGTTTGTATTCCCTG+TGG 0.659976 1_4:-69119878 Msa0181030:CDS
GATTGTACTCATACCAAAGG+CGG 0.661351 1_4:-69119598 Msa0181030:CDS
TGGCATATCTTCAACAAATG+TGG 0.668014 1_4:-69119921 Msa0181030:CDS
TGATTGCACTATCTATGCAG+AGG 0.671933 1_4:+69119575 None:intergenic
TAGATTCCAACTCTCTACAT+CGG 0.677625 1_4:-69119749 Msa0181030:CDS
ATATCTTCAACAAATGTGGT+GGG 0.687256 1_4:-69119917 Msa0181030:CDS
TTATGCTGTAACTTCCCACA+GGG 0.694696 1_4:+69119863 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCAATTAATTCATTTA+TGG - chr1_4:69119433-69119452 Msa0181030:three_prime_UTR 10.0%
!!! TTTTCAATTAATTCATTTAT+GGG - chr1_4:69119434-69119453 Msa0181030:three_prime_UTR 10.0%
!! TTAACAAATATCTATTAAAA+TGG - chr1_4:69121441-69121460 Msa0181030:intron 10.0%
!! AATAAAATGATTAGAGAAAA+GGG + chr1_4:69119395-69119414 None:intergenic 15.0%
!! TTTCAATTAATTCATTTATG+GGG - chr1_4:69119435-69119454 Msa0181030:three_prime_UTR 15.0%
!! TGAAGAAAAAAAAAATGAAA+AGG + chr1_4:69119873-69119892 None:intergenic 15.0%
!! ACTATAGAAATGTATAAATA+TGG - chr1_4:69120067-69120086 Msa0181030:intron 15.0%
!!! ATACTTTTTAAGAATGAATT+AGG - chr1_4:69120325-69120344 Msa0181030:intron 15.0%
!! ATATGAAAATGTGTTTATAA+CGG - chr1_4:69120609-69120628 Msa0181030:intron 15.0%
!! TTAAATTTCTACACTAAATT+TGG + chr1_4:69120663-69120682 None:intergenic 15.0%
!!! TATAGAATAAAGTTTTCATT+AGG + chr1_4:69120788-69120807 None:intergenic 15.0%
!!! ACATTATTTTGAAAATATGT+AGG + chr1_4:69120961-69120980 None:intergenic 15.0%
!! TACAAATCAATTAAAATCAA+TGG - chr1_4:69120999-69121018 Msa0181030:intron 15.0%
!! TCTTATCAAAAATAAACATT+AGG - chr1_4:69121844-69121863 Msa0181030:intron 15.0%
!!! TTTTTATTTTTTGTATTCAC+AGG - chr1_4:69121999-69122018 Msa0181030:CDS 15.0%
!!! AAAGAAAACTTGATTTTTAT+GGG + chr1_4:69122325-69122344 None:intergenic 15.0%
!! TTTATATAGTTATATTAGAG+AGG - chr1_4:69122476-69122495 Msa0181030:CDS 15.0%
!! TTATATAGTTATATTAGAGA+GGG - chr1_4:69122477-69122496 Msa0181030:CDS 15.0%
!! GAATAAAATGATTAGAGAAA+AGG + chr1_4:69119396-69119415 None:intergenic 20.0%
!! TTTCTTGCTTATAAATTTCT+TGG - chr1_4:69119683-69119702 Msa0181030:CDS 20.0%
!! AAACAAAGATCAAATATAAG+AGG + chr1_4:69120102-69120121 None:intergenic 20.0%
!!! GTTTCTTAATATTTTTCATG+TGG - chr1_4:69120698-69120717 Msa0181030:intron 20.0%
!!! TTTTAAGAAAAAGCAGTTTT+TGG - chr1_4:69120819-69120838 Msa0181030:intron 20.0%
!!! TTTAAGAAAAAGCAGTTTTT+GGG - chr1_4:69120820-69120839 Msa0181030:intron 20.0%
!! AGATGAAAGTTTAATATGTT+CGG - chr1_4:69120864-69120883 Msa0181030:intron 20.0%
!! TTGGTCAAATAATAAATAGT+AGG - chr1_4:69120895-69120914 Msa0181030:intron 20.0%
!!! CTAAATGATATTTTAATCCA+TGG + chr1_4:69121053-69121072 None:intergenic 20.0%
!!! CATTTAGTTTATTTTCATTG+AGG - chr1_4:69121066-69121085 Msa0181030:intron 20.0%
!!! ATCTTTTCAAAGTCTTATAT+AGG - chr1_4:69121112-69121131 Msa0181030:intron 20.0%
!! ATTAACCCTAAAAATTTAGA+AGG - chr1_4:69121137-69121156 Msa0181030:intron 20.0%
!!! TAGCATTTTATGGATAATTT+AGG - chr1_4:69121332-69121351 Msa0181030:intron 20.0%
!! AAGAAAAGCAGTAATATTAA+CGG + chr1_4:69121689-69121708 None:intergenic 20.0%
!! TATCCTGTAAAAAAAAATAG+TGG - chr1_4:69121785-69121804 Msa0181030:intron 20.0%
!!! TTTGCATTTTCAATTAGTTT+TGG + chr1_4:69121952-69121971 None:intergenic 20.0%
!! AACTAATTGAAAATGCAAAA+TGG - chr1_4:69121953-69121972 Msa0181030:CDS 20.0%
!!! CAAAGAAAACTTGATTTTTA+TGG + chr1_4:69122326-69122345 None:intergenic 20.0%
!!! CATAAAAATCAAGTTTTCTT+TGG - chr1_4:69122324-69122343 Msa0181030:CDS 20.0%
! TAATTCATCATCATCAAGAA+CGG - chr1_4:69119508-69119527 Msa0181030:three_prime_UTR 25.0%
! TAAGATAGAGTAACTTACTT+TGG + chr1_4:69119786-69119805 None:intergenic 25.0%
! AAATCAAGGATGCTAAAATA+AGG + chr1_4:69119810-69119829 None:intergenic 25.0%
!!! TCTTGATTTGTTTTTCTTTC+TGG - chr1_4:69119909-69119928 Msa0181030:CDS 25.0%
!!! TTTGTTTTTCTTTCTGGTAT+AGG - chr1_4:69119915-69119934 Msa0181030:CDS 25.0%
! GAATAGATGATAGAAGATAT+TGG - chr1_4:69120007-69120026 Msa0181030:intron 25.0%
!! ATTTTATGTAAACACAAAGC+AGG + chr1_4:69120220-69120239 None:intergenic 25.0%
!! TTTGACTAACTTTTTAATGC+AGG + chr1_4:69120267-69120286 None:intergenic 25.0%
! TTGATGTGTGAATAATTTGA+TGG + chr1_4:69120399-69120418 None:intergenic 25.0%
! AAAATTTAGTCACCCTATAT+TGG - chr1_4:69120492-69120511 Msa0181030:intron 25.0%
! AAATTTAGTCACCCTATATT+GGG - chr1_4:69120493-69120512 Msa0181030:intron 25.0%
!!! TTATACATGTTTAGTCTTGA+GGG - chr1_4:69120549-69120568 Msa0181030:intron 25.0%
! AATGTTTATAGAAGTGAAAG+TGG - chr1_4:69120976-69120995 Msa0181030:intron 25.0%
!! CAGTTCCTTCTAAATTTTTA+GGG + chr1_4:69121145-69121164 None:intergenic 25.0%
!! ACAGTTCCTTCTAAATTTTT+AGG + chr1_4:69121146-69121165 None:intergenic 25.0%
! TTAAAAGCCTATTTGCAAAT+TGG - chr1_4:69121289-69121308 Msa0181030:intron 25.0%
!!! CAAATTGGCTTATGTTTTTA+TGG - chr1_4:69121304-69121323 Msa0181030:intron 25.0%
!! TATGGTCAAATAGCATTTTA+TGG - chr1_4:69121322-69121341 Msa0181030:intron 25.0%
!! ATGAAAATGACCTTTGTTTA+AGG - chr1_4:69121408-69121427 Msa0181030:intron 25.0%
!! TGAAAATGACCTTTGTTTAA+GGG - chr1_4:69121409-69121428 Msa0181030:intron 25.0%
!! TGAATTATACGCATTTTACT+TGG - chr1_4:69121623-69121642 Msa0181030:intron 25.0%
! ATCGCATATTATAATGAGAA+GGG + chr1_4:69121660-69121679 None:intergenic 25.0%
!!! GTTAATATTACTGCTTTTCT+TGG - chr1_4:69121688-69121707 Msa0181030:intron 25.0%
!!! TGACCACTATTTTTTTTTAC+AGG + chr1_4:69121791-69121810 None:intergenic 25.0%
! TTAGTATTAAGAAGTTTCTG+CGG - chr1_4:69121880-69121899 Msa0181030:intron 25.0%
! AAGACTCAAAAAATTATAGC+TGG - chr1_4:69122423-69122442 Msa0181030:CDS 25.0%
AGATAGAATAGGTTAGAGAT+TGG + chr1_4:69119350-69119369 None:intergenic 30.0%
AATGATTAGAGAAAAGGGTT+AGG + chr1_4:69119390-69119409 None:intergenic 30.0%
AATTCATCATCATCAAGAAC+GGG - chr1_4:69119509-69119528 Msa0181030:three_prime_UTR 30.0%
TGATATATGCAAATTGGCTA+GGG - chr1_4:69119589-69119608 Msa0181030:CDS 30.0%
TGAAGCTAAGTGAAAAATCA+AGG + chr1_4:69119824-69119843 None:intergenic 30.0%
!! TCTGGTATAGGAAGTTTTAT+TGG - chr1_4:69119927-69119946 Msa0181030:CDS 30.0%
! TCAAAGTCTTTGAAGATAAC+AGG - chr1_4:69119985-69120004 Msa0181030:intron 30.0%
!!! TTATTTTGACCCTGTTTTGA+AGG - chr1_4:69120122-69120141 Msa0181030:intron 30.0%
GACACACATTGAAAATGTTT+AGG + chr1_4:69120186-69120205 None:intergenic 30.0%
ATGTGTGAATAATTTGATGG+TGG + chr1_4:69120396-69120415 None:intergenic 30.0%
! CAAATAGTTTGTGTAAGAGA+AGG - chr1_4:69120421-69120440 Msa0181030:intron 30.0%
ATAGTTGTTGACCCAATATA+GGG + chr1_4:69120507-69120526 None:intergenic 30.0%
CAAGACTAAACATGTATAAG+AGG + chr1_4:69120548-69120567 None:intergenic 30.0%
!! CTTATACATGTTTAGTCTTG+AGG - chr1_4:69120548-69120567 Msa0181030:intron 30.0%
!!! AATATGTTCGGCTCTTTTTT+TGG - chr1_4:69120876-69120895 Msa0181030:intron 30.0%
! GGTTTGTTCAGATTATTCTT+TGG + chr1_4:69121032-69121051 None:intergenic 30.0%
AGAATAATCTGAACAAACCA+TGG - chr1_4:69121033-69121052 Msa0181030:intron 30.0%
! TTAGAAGGAACTGTTGTTTA+AGG - chr1_4:69121152-69121171 Msa0181030:intron 30.0%
! ACATTTTCCTGAAATTACGA+TGG - chr1_4:69121220-69121239 Msa0181030:intron 30.0%
ACATAAGCCAATTTGCAAAT+AGG + chr1_4:69121299-69121318 None:intergenic 30.0%
CATTACTTTCCCTTAAACAA+AGG + chr1_4:69121421-69121440 None:intergenic 30.0%
CATATTCCACGAATAGAATA+TGG + chr1_4:69121486-69121505 None:intergenic 30.0%
CAAAGACACTTCACATAATT+GGG + chr1_4:69121554-69121573 None:intergenic 30.0%
TCGCATATTATAATGAGAAG+GGG + chr1_4:69121659-69121678 None:intergenic 30.0%
GATCGCATATTATAATGAGA+AGG + chr1_4:69121661-69121680 None:intergenic 30.0%
TTCTTGGAATATATCCCAAT+TGG - chr1_4:69121704-69121723 Msa0181030:intron 30.0%
TGTTTGTCTACAAACCAATT+GGG + chr1_4:69121721-69121740 None:intergenic 30.0%
ATATCTTCAACAAATGTGGT+GGG - chr1_4:69122036-69122055 Msa0181030:intron 30.0%
ATAACTTTCAGACTCCAATT+GGG - chr1_4:69122109-69122128 Msa0181030:intron 30.0%
! TTGATTTTTATGGGCTCATT+GGG + chr1_4:69122316-69122335 None:intergenic 30.0%
ATTGATTGTACTCATACCAA+AGG - chr1_4:69122352-69122371 Msa0181030:CDS 30.0%
!!! TCAAGTTAGCCCTTTATTTT+AGG - chr1_4:69122572-69122591 Msa0181030:five_prime_UTR 30.0%
TCAAACCCACCTAAAATAAA+GGG + chr1_4:69122584-69122603 None:intergenic 30.0%
AAAGTAAACTGCATACATAC+AGG + chr1_4:69122621-69122640 None:intergenic 30.0%
TAGAATAGGTTAGAGATTGG+AGG + chr1_4:69119347-69119366 None:intergenic 35.0%
GGTAAAAGAGGAGATAGAAT+AGG + chr1_4:69119361-69119380 None:intergenic 35.0%
GTTAGGTTCAAAGGTAAAAG+AGG + chr1_4:69119373-69119392 None:intergenic 35.0%
TCCACCTGATATATGCAAAT+TGG - chr1_4:69119583-69119602 Msa0181030:CDS 35.0%
CTAGCCAATTTGCATATATC+AGG + chr1_4:69119590-69119609 None:intergenic 35.0%
CTGATATATGCAAATTGGCT+AGG - chr1_4:69119588-69119607 Msa0181030:CDS 35.0%
AAGAAGCTCTATGAAAAGCA+CGG + chr1_4:69119619-69119638 None:intergenic 35.0%
!!! TTCTTCTGCTGATTTTGTGT+GGG - chr1_4:69119634-69119653 Msa0181030:CDS 35.0%
GACATCTTTCTTAGTCATAG+TGG + chr1_4:69119723-69119742 None:intergenic 35.0%
!! GTTTTATTGGACAAATGCAG+TGG - chr1_4:69119940-69119959 Msa0181030:intron 35.0%
TTGGATTTACATTCCAACTG+AGG - chr1_4:69120026-69120045 Msa0181030:intron 35.0%
GAAACATAGCCTTCAAAACA+GGG + chr1_4:69120134-69120153 None:intergenic 35.0%
AGAAACATAGCCTTCAAAAC+AGG + chr1_4:69120135-69120154 None:intergenic 35.0%
!!! TGTTTTGAAGGCTATGTTTC+TGG - chr1_4:69120134-69120153 Msa0181030:intron 35.0%
!! TTTGATGGTGGCTAAATTGA+TGG + chr1_4:69120384-69120403 None:intergenic 35.0%
! TAGTTTGTGTAAGAGAAGGT+TGG - chr1_4:69120425-69120444 Msa0181030:intron 35.0%
TCTCACATTGAAATGAGACA+AGG - chr1_4:69120464-69120483 Msa0181030:intron 35.0%
GATAGTTGTTGACCCAATAT+AGG + chr1_4:69120508-69120527 None:intergenic 35.0%
TGTGTTTATAACGGTGTATG+CGG - chr1_4:69120618-69120637 Msa0181030:intron 35.0%
AAAGCTTCCATCGTAATTTC+AGG + chr1_4:69121230-69121249 None:intergenic 35.0%
CTCATAAAGAAACTGCCATA+GGG + chr1_4:69121257-69121276 None:intergenic 35.0%
CTATGGCAGTTTCTTTATGA+GGG - chr1_4:69121256-69121275 Msa0181030:intron 35.0%
TATGGCAGTTTCTTTATGAG+GGG - chr1_4:69121257-69121276 Msa0181030:intron 35.0%
CCAAAGACACTTCACATAAT+TGG + chr1_4:69121555-69121574 None:intergenic 35.0%
! CCAATTATGTGAAGTGTCTT+TGG - chr1_4:69121552-69121571 Msa0181030:intron 35.0%
GCATATTATAATGAGAAGGG+GGG + chr1_4:69121657-69121676 None:intergenic 35.0%
CGCATATTATAATGAGAAGG+GGG + chr1_4:69121658-69121677 None:intergenic 35.0%
AGCAGTAATATTAACGGTTG+AGG + chr1_4:69121683-69121702 None:intergenic 35.0%
CTGTTTGTCTACAAACCAAT+TGG + chr1_4:69121722-69121741 None:intergenic 35.0%
TATTCACAGGTTCAAGAATG+TGG - chr1_4:69122012-69122031 Msa0181030:CDS 35.0%
TGGCATATCTTCAACAAATG+TGG - chr1_4:69122032-69122051 Msa0181030:intron 35.0%
CATATCTTCAACAAATGTGG+TGG - chr1_4:69122035-69122054 Msa0181030:intron 35.0%
CATAACTTTCAGACTCCAAT+TGG - chr1_4:69122108-69122127 Msa0181030:intron 35.0%
!! GTTTTGATGACTTTCCCAAT+TGG + chr1_4:69122126-69122145 None:intergenic 35.0%
GGAAAGTCATCAAAACGATT+GGG - chr1_4:69122130-69122149 Msa0181030:intron 35.0%
TGTAGAGAGTTGGAATCTAA+CGG + chr1_4:69122203-69122222 None:intergenic 35.0%
TAGATTCCAACTCTCTACAT+CGG - chr1_4:69122204-69122223 Msa0181030:CDS 35.0%
!! ATCTCAGAGTGTTATTTGCA+TGG - chr1_4:69122241-69122260 Msa0181030:CDS 35.0%
!! TCTCAGAGTGTTATTTGCAT+GGG - chr1_4:69122242-69122261 Msa0181030:CDS 35.0%
TTACCATGTTGGAGATTTCA+TGG - chr1_4:69122282-69122301 Msa0181030:CDS 35.0%
! CTTGATTTTTATGGGCTCAT+TGG + chr1_4:69122317-69122336 None:intergenic 35.0%
AGTCTTTCTCTAAACACAGT+TGG + chr1_4:69122409-69122428 None:intergenic 35.0%
!!! AGTTAGCCCTTTATTTTAGG+TGG - chr1_4:69122575-69122594 Msa0181030:five_prime_UTR 35.0%
!!! GTTAGCCCTTTATTTTAGGT+GGG - chr1_4:69122576-69122595 Msa0181030:five_prime_UTR 35.0%
CTCAAACCCACCTAAAATAA+AGG + chr1_4:69122585-69122604 None:intergenic 35.0%
GAGAAAAGGGTTAGGTTCAA+AGG + chr1_4:69119382-69119401 None:intergenic 40.0%
TGGATCAAGATGCATGAGTA+TGG + chr1_4:69119567-69119586 None:intergenic 40.0%
GCCAATTTGCATATATCAGG+TGG + chr1_4:69119587-69119606 None:intergenic 40.0%
!!! CTTCTTCTGCTGATTTTGTG+TGG - chr1_4:69119633-69119652 Msa0181030:CDS 40.0%
GCAAGAAACTTGTAGCATGA+TGG + chr1_4:69119671-69119690 None:intergenic 40.0%
TGTCAACCTAATCGCTTTGA+CGG - chr1_4:69119755-69119774 Msa0181030:CDS 40.0%
TGTTTAGGAGTCAAGACACA+TGG + chr1_4:69120171-69120190 None:intergenic 40.0%
! TATTTTTCATGTGGCAGCTG+AGG - chr1_4:69120707-69120726 Msa0181030:intron 40.0%
CCTCATAAAGAAACTGCCAT+AGG + chr1_4:69121258-69121277 None:intergenic 40.0%
CCTATGGCAGTTTCTTTATG+AGG - chr1_4:69121255-69121274 Msa0181030:intron 40.0%
ATGGCAGTTTCTTTATGAGG+GGG - chr1_4:69121258-69121277 Msa0181030:intron 40.0%
GCAATGCCATATTCTATTCG+TGG - chr1_4:69121477-69121496 Msa0181030:intron 40.0%
! TGGGCAAATAGAAGCTTTTG+TGG + chr1_4:69121535-69121554 None:intergenic 40.0%
!! ATGTGGTGGGTTGAAGTAAT+AGG - chr1_4:69122049-69122068 Msa0181030:intron 40.0%
CTAGAGTTTGTATTCCCTGT+GGG - chr1_4:69122076-69122095 Msa0181030:intron 40.0%
TTATGCTGTAACTTCCCACA+GGG + chr1_4:69122093-69122112 None:intergenic 40.0%
GGGAAAGTCATCAAAACGAT+TGG - chr1_4:69122129-69122148 Msa0181030:intron 40.0%
TGCAACGATGATCAAGTTCA+TGG - chr1_4:69122163-69122182 Msa0181030:intron 40.0%
GTAGAGAGTTGGAATCTAAC+GGG + chr1_4:69122202-69122221 None:intergenic 40.0%
! CAATGGGCTTATTACCATGT+TGG - chr1_4:69122271-69122290 Msa0181030:CDS 40.0%
CAACCATGAAATCTCCAACA+TGG + chr1_4:69122288-69122307 None:intergenic 40.0%
GATTGTACTCATACCAAAGG+CGG - chr1_4:69122355-69122374 Msa0181030:CDS 40.0%
TGATTGCACTATCTATGCAG+AGG + chr1_4:69122381-69122400 None:intergenic 40.0%
ACATTCCAACTGAGGAATCC+AGG - chr1_4:69120034-69120053 Msa0181030:intron 45.0%
TCTATAGTGCATCTCTCACC+TGG + chr1_4:69120055-69120074 None:intergenic 45.0%
GTTTATAACGGTGTATGCGG+TGG - chr1_4:69120621-69120640 Msa0181030:intron 45.0%
GTGTATGCGGTGGACAATAA+GGG - chr1_4:69120631-69120650 Msa0181030:intron 45.0%
ATGTGGCAGCTGAGGTAAAA+GGG - chr1_4:69120715-69120734 Msa0181030:intron 45.0%
ATGGAAGCTTTCTCACCCTA+TGG - chr1_4:69121239-69121258 Msa0181030:intron 45.0%
GCTAGAGTTTGTATTCCCTG+TGG - chr1_4:69122075-69122094 Msa0181030:intron 45.0%
GTTATGCTGTAACTTCCCAC+AGG + chr1_4:69122094-69122113 None:intergenic 45.0%
ACGATGATCAAGTTCATGGC+TGG - chr1_4:69122167-69122186 Msa0181030:intron 45.0%
CGATGATCAAGTTCATGGCT+GGG - chr1_4:69122168-69122187 Msa0181030:intron 45.0%
TTCCAACTCTCTACATCGGA+CGG - chr1_4:69122208-69122227 Msa0181030:CDS 45.0%
!! AGTGTTATTTGCATGGGCCA+GGG - chr1_4:69122248-69122267 Msa0181030:CDS 45.0%
!! ATATATTATATTAATAAACT+TGG - chr1_4:69121584-69121603 Msa0181030:intron 5.0%
!! TATATTATATTAATAAACTT+GGG - chr1_4:69121585-69121604 Msa0181030:intron 5.0%
CAACCTAATCGCTTTGACGG+TGG - chr1_4:69119758-69119777 Msa0181030:CDS 50.0%
GTACCACCGTCAAAGCGATT+AGG + chr1_4:69119764-69119783 None:intergenic 50.0%
TCTCACCTGGATTCCTCAGT+TGG + chr1_4:69120042-69120061 None:intergenic 50.0%
GGTGTATGCGGTGGACAATA+AGG - chr1_4:69120630-69120649 Msa0181030:intron 50.0%
CATGTGGCAGCTGAGGTAAA+AGG - chr1_4:69120714-69120733 Msa0181030:intron 50.0%
TGTGGCAGCTGAGGTAAAAG+GGG - chr1_4:69120716-69120735 Msa0181030:intron 50.0%
!! GAGTGTTATTTGCATGGGCC+AGG - chr1_4:69122247-69122266 Msa0181030:CDS 50.0%
TGGTAATAAGCCCATTGCCC+TGG + chr1_4:69122268-69122287 None:intergenic 50.0%
GTGGCAGCTGAGGTAAAAGG+GGG - chr1_4:69120717-69120736 Msa0181030:intron 55.0%
TGGCAGCTGAGGTAAAAGGG+GGG - chr1_4:69120718-69120737 Msa0181030:intron 55.0%
GACCGTCCGATGTAGAGAGT+TGG + chr1_4:69122213-69122232 None:intergenic 55.0%
ATTTGCATGGGCCAGGGCAA+TGG - chr1_4:69122254-69122273 Msa0181030:CDS 55.0%
TTTGCATGGGCCAGGGCAAT+GGG - chr1_4:69122255-69122274 Msa0181030:CDS 55.0%
ATCTATGCAGAGGCCGCCTT+TGG + chr1_4:69122371-69122390 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 69119307 69122668 69119307 ID=Msa0181030;Name=Msa0181030
chr1_4 mRNA 69119307 69122668 69119307 ID=Msa0181030-mRNA-1;Parent=Msa0181030;Name=Msa0181030-mRNA-1;_AED=0.01;_eAED=0.01;_QI=145|1|1|1|1|1|3|227|291
chr1_4 exon 69119307 69119954 69119307 ID=Msa0181030-mRNA-1:exon:22967;Parent=Msa0181030-mRNA-1
chr1_4 exon 69121920 69122038 69121920 ID=Msa0181030-mRNA-1:exon:22966;Parent=Msa0181030-mRNA-1
chr1_4 exon 69122188 69122668 69122188 ID=Msa0181030-mRNA-1:exon:22965;Parent=Msa0181030-mRNA-1
chr1_4 five_prime_UTR 69122524 69122668 69122524 ID=Msa0181030-mRNA-1:five_prime_utr;Parent=Msa0181030-mRNA-1
chr1_4 CDS 69122188 69122523 69122188 ID=Msa0181030-mRNA-1:cds;Parent=Msa0181030-mRNA-1
chr1_4 CDS 69121920 69122038 69121920 ID=Msa0181030-mRNA-1:cds;Parent=Msa0181030-mRNA-1
chr1_4 CDS 69119534 69119954 69119534 ID=Msa0181030-mRNA-1:cds;Parent=Msa0181030-mRNA-1
chr1_4 three_prime_UTR 69119307 69119533 69119307 ID=Msa0181030-mRNA-1:three_prime_utr;Parent=Msa0181030-mRNA-1
Gene Sequence

>Msa0181030

ATGGGGTCTAGTATTTCTTCAACTGCATCTATAAGAGAAAACAATAACGAAGACTCTAATTCATCATCATCAAGAACGGGTCTTTGTGATATTGCAGAGAGTTGCATCTCTTCCATACTCATGCATCTTGATCCACCTGATATATGCAAATTGGCTAGGGTCAACCGTGCTTTTCATAGAGCTTCTTCTGCTGATTTTGTGTGGGAATCAAAGTTACCATCATGCTACAAGTTTCTTGCTTATAAATTTCTTGGTGAAGAAAATCTTTCCACTATGACTAAGAAAGATGTCTACACAAAACTATGTCAACCTAATCGCTTTGACGGTGGTACCAAAGAAGTTTTATTGGACAAATGCAGTGGACAAGTTTGTTTGTTCATGTCATCAAAGTCTTTGAAGATAACAGGAATAGATGATAGAAGATATTGGATTTACATTCCAACTGAGGAATCCAGGTTCAAGAATGTGGCATATCTTCAACAAATGTGGTGGGTTGAAGTAATAGGAGAGCTAGAGTTTGTATTCCCTGTGGGAAGTTACAGCATAACTTTCAGACTCCAATTGGGAAAGTCATCAAAACGATTGGGCAGACGTGTGTGCAACGATGATCAAGTTCATGGCTGGGACATCAAGCCCGTTAGATTCCAACTCTCTACATCGGACGGTCAGCGTTCAATCTCAGAGTGTTATTTGCATGGGCCAGGGCAATGGGCTTATTACCATGTTGGAGATTTCATGGTTGTAAAGCCCAATGAGCCCATAAAAATCAAGTTTTCTTTGGCTCAAATTGATTGTACTCATACCAAAGGCGGCCTCTGCATAGATAGTGCAATCATTTCTCCAACTGTGTTTAGAGAAAGACTCAAAAAATTATAG

Protein sequence

>Msa0181030

MGSSISSTASIRENNNEDSNSSSSRTGLCDIAESCISSILMHLDPPDICKLARVNRAFHRASSADFVWESKLPSCYKFLAYKFLGEENLSTMTKKDVYTKLCQPNRFDGGTKEVLLDKCSGQVCLFMSSKSLKITGIDDRRYWIYIPTEESRFKNVAYLQQMWWVEVIGELEFVFPVGSYSITFRLQLGKSSKRLGRRVCNDDQVHGWDIKPVRFQLSTSDGQRSISECYLHGPGQWAYYHVGDFMVVKPNEPIKIKFSLAQIDCTHTKGGLCIDSAIISPTVFRERLKKL*