Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181030 | sp|Q9LEX0|P2A13_ARATH | 59.574 | 282 | 110 | 3 | 1 | 281 | 1 | 279 | 1.89e-125 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181030 | G7IAQ2 | 94.845 | 291 | 15 | 0 | 1 | 291 | 1 | 291 | 0.0 | 547 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0181030 | Msa1422510 | 0.988817 | 1.564204e-175 | -8.615850e-47 |
| Msa0181030 | Msa1423180 | 0.967963 | 5.239606e-128 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181030 | MtrunA17_Chr1g0203751 | 94.845 | 291 | 15 | 0 | 1 | 291 | 1 | 291 | 0.0 | 547 |
| Msa0181030 | MtrunA17_Chr6g0472801 | 72.792 | 283 | 77 | 0 | 9 | 291 | 3 | 285 | 2.16e-157 | 440 |
| Msa0181030 | MtrunA17_Chr8g0350401 | 58.803 | 284 | 106 | 3 | 1 | 279 | 1 | 278 | 1.92e-122 | 352 |
| Msa0181030 | MtrunA17_Chr4g0057281 | 61.154 | 260 | 100 | 1 | 28 | 286 | 19 | 278 | 1.82e-118 | 341 |
| Msa0181030 | MtrunA17_Chr5g0397981 | 54.225 | 284 | 125 | 3 | 4 | 286 | 14 | 293 | 1.04e-110 | 322 |
| Msa0181030 | MtrunA17_Chr7g0265551 | 52.013 | 298 | 123 | 2 | 1 | 287 | 73 | 361 | 9.35e-109 | 320 |
| Msa0181030 | MtrunA17_Chr7g0272101 | 22.711 | 273 | 179 | 6 | 31 | 286 | 4 | 261 | 6.39e-25 | 100 |
| Msa0181030 | MtrunA17_Chr7g0272091 | 25.000 | 284 | 185 | 6 | 23 | 281 | 2 | 282 | 8.69e-24 | 97.8 |
| Msa0181030 | MtrunA17_Chr1g0189671 | 28.755 | 233 | 150 | 4 | 26 | 257 | 2 | 219 | 1.39e-23 | 97.1 |
| Msa0181030 | MtrunA17_Chr1g0203281 | 28.421 | 285 | 164 | 8 | 26 | 283 | 2 | 273 | 2.18e-23 | 96.7 |
| Msa0181030 | MtrunA17_Chr1g0189591 | 37.762 | 143 | 86 | 2 | 30 | 169 | 15 | 157 | 1.30e-22 | 95.1 |
| Msa0181030 | MtrunA17_Chr4g0010881 | 23.735 | 257 | 174 | 6 | 31 | 285 | 4 | 240 | 1.70e-22 | 93.6 |
| Msa0181030 | MtrunA17_Chr1g0189821 | 36.620 | 142 | 88 | 2 | 30 | 169 | 6 | 147 | 4.14e-22 | 93.2 |
| Msa0181030 | MtrunA17_Chr1g0189611 | 34.932 | 146 | 93 | 2 | 26 | 169 | 2 | 147 | 2.84e-21 | 90.9 |
| Msa0181030 | MtrunA17_Chr1g0192371 | 34.266 | 143 | 92 | 2 | 31 | 171 | 11 | 153 | 4.84e-20 | 87.8 |
| Msa0181030 | MtrunA17_Chr1g0203331 | 37.984 | 129 | 77 | 2 | 45 | 172 | 6 | 132 | 3.75e-19 | 84.3 |
| Msa0181030 | MtrunA17_Chr1g0189751 | 34.667 | 150 | 95 | 2 | 26 | 174 | 2 | 149 | 2.76e-18 | 83.2 |
| Msa0181030 | MtrunA17_Chr1g0189721 | 32.530 | 166 | 105 | 4 | 26 | 186 | 2 | 165 | 3.47e-18 | 82.4 |
| Msa0181030 | MtrunA17_Chr3g0097191 | 28.674 | 279 | 152 | 9 | 28 | 281 | 10 | 266 | 3.96e-18 | 82.0 |
| Msa0181030 | MtrunA17_Chr1g0189641 | 27.426 | 237 | 151 | 5 | 26 | 255 | 2 | 224 | 3.31e-17 | 79.7 |
| Msa0181030 | MtrunA17_Chr1g0189621 | 32.877 | 146 | 94 | 3 | 30 | 174 | 6 | 148 | 6.33e-17 | 78.6 |
| Msa0181030 | MtrunA17_Chr1g0189781 | 32.639 | 144 | 94 | 2 | 31 | 171 | 11 | 154 | 5.03e-15 | 73.6 |
| Msa0181030 | MtrunA17_Chr3g0095261 | 27.018 | 285 | 165 | 10 | 28 | 281 | 10 | 282 | 2.44e-14 | 71.6 |
| Msa0181030 | MtrunA17_Chr1g0190071 | 31.034 | 145 | 97 | 2 | 30 | 171 | 6 | 150 | 4.15e-14 | 71.2 |
| Msa0181030 | MtrunA17_Chr1g0189771 | 28.662 | 157 | 109 | 2 | 18 | 171 | 2 | 158 | 3.04e-13 | 66.6 |
| Msa0181030 | MtrunA17_Chr1g0189661 | 31.944 | 144 | 96 | 2 | 30 | 171 | 6 | 149 | 4.99e-13 | 68.2 |
| Msa0181030 | MtrunA17_Chr3g0078331 | 30.000 | 160 | 92 | 5 | 26 | 169 | 15 | 170 | 3.58e-11 | 62.8 |
| Msa0181030 | MtrunA17_Chr1g0189711 | 32.886 | 149 | 86 | 6 | 30 | 169 | 6 | 149 | 4.46e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181030 | AT3G61060.1 | 59.574 | 282 | 110 | 3 | 1 | 281 | 1 | 279 | 1.92e-126 | 362 |
| Msa0181030 | AT3G61060.2 | 59.364 | 283 | 110 | 4 | 1 | 281 | 1 | 280 | 1.18e-124 | 357 |
| Msa0181030 | AT5G52120.1 | 55.019 | 269 | 115 | 1 | 27 | 289 | 20 | 288 | 1.82e-110 | 322 |
| Msa0181030 | AT1G12710.1 | 56.296 | 270 | 112 | 3 | 25 | 291 | 25 | 291 | 1.21e-104 | 306 |
| Msa0181030 | AT1G63090.1 | 54.104 | 268 | 121 | 2 | 25 | 291 | 23 | 289 | 1.63e-100 | 296 |
| Msa0181030 | AT3G53000.1 | 48.973 | 292 | 130 | 3 | 1 | 281 | 1 | 284 | 2.52e-97 | 288 |
| Msa0181030 | AT1G12710.2 | 48.718 | 312 | 112 | 4 | 25 | 291 | 25 | 333 | 1.30e-95 | 285 |
| Msa0181030 | AT1G09155.1 | 27.586 | 203 | 131 | 3 | 31 | 231 | 3 | 191 | 2.58e-21 | 91.7 |
| Msa0181030 | AT2G02360.1 | 37.681 | 138 | 80 | 2 | 33 | 169 | 19 | 151 | 2.74e-21 | 91.3 |
| Msa0181030 | AT2G02240.1 | 28.777 | 278 | 148 | 8 | 31 | 282 | 64 | 317 | 3.12e-19 | 86.3 |
| Msa0181030 | AT2G02230.1 | 32.278 | 158 | 99 | 3 | 15 | 171 | 21 | 171 | 5.00e-19 | 86.3 |
| Msa0181030 | AT5G24560.1 | 27.160 | 162 | 106 | 3 | 30 | 184 | 5 | 161 | 4.17e-18 | 80.9 |
| Msa0181030 | AT1G80110.1 | 25.746 | 268 | 174 | 7 | 28 | 282 | 1 | 256 | 2.72e-17 | 80.1 |
| Msa0181030 | AT2G02340.1 | 30.994 | 171 | 102 | 4 | 19 | 181 | 27 | 189 | 3.79e-17 | 80.5 |
| Msa0181030 | AT2G02310.1 | 35.878 | 131 | 78 | 2 | 30 | 159 | 47 | 172 | 1.50e-16 | 78.6 |
| Msa0181030 | AT2G02350.2 | 30.769 | 156 | 101 | 3 | 13 | 166 | 9 | 159 | 1.71e-16 | 78.6 |
| Msa0181030 | AT2G02250.1 | 29.714 | 175 | 113 | 4 | 2 | 171 | 18 | 187 | 4.74e-16 | 77.4 |
| Msa0181030 | AT1G56250.1 | 24.468 | 282 | 177 | 8 | 31 | 281 | 4 | 280 | 5.67e-15 | 73.9 |
| Msa0181030 | AT1G56240.1 | 22.603 | 292 | 170 | 6 | 31 | 281 | 4 | 280 | 6.01e-14 | 70.9 |
| Msa0181030 | AT2G02300.1 | 29.801 | 151 | 101 | 2 | 22 | 171 | 28 | 174 | 3.41e-11 | 63.2 |
Find 71 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTGCTTATAAATTTCT+TGG | 0.233636 | 1_4:-69122270 | Msa0181030:CDS |
| CTCAAACCCACCTAAAATAA+AGG | 0.284259 | 1_4:+69119371 | None:intergenic |
| TCCACCTGATATATGCAAAT+TGG | 0.341137 | 1_4:-69122370 | Msa0181030:CDS |
| CATAACTTTCAGACTCCAAT+TGG | 0.346494 | 1_4:-69119845 | Msa0181030:CDS |
| TTACCATGTTGGAGATTTCA+TGG | 0.347440 | 1_4:-69119671 | Msa0181030:CDS |
| AGATAGAATAGGTTAGAGAT+TGG | 0.354650 | 1_4:+69122606 | None:intergenic |
| ATGTGGTGGGTTGAAGTAAT+AGG | 0.354758 | 1_4:-69119904 | Msa0181030:CDS |
| TCAAAGTCTTTGAAGATAAC+AGG | 0.357934 | 1_4:-69121968 | Msa0181030:CDS |
| ATTTGCATGGGCCAGGGCAA+TGG | 0.362661 | 1_4:-69119699 | Msa0181030:CDS |
| AATAAAATGATTAGAGAAAA+GGG | 0.385177 | 1_4:+69122561 | None:intergenic |
| TGGATCAAGATGCATGAGTA+TGG | 0.388988 | 1_4:+69122389 | None:intergenic |
| CTAGCCAATTTGCATATATC+AGG | 0.392374 | 1_4:+69122366 | None:intergenic |
| GAATAAAATGATTAGAGAAA+AGG | 0.394648 | 1_4:+69122560 | None:intergenic |
| TTTGCATGGGCCAGGGCAAT+GGG | 0.397867 | 1_4:-69119698 | Msa0181030:CDS |
| GAGTGTTATTTGCATGGGCC+AGG | 0.404946 | 1_4:-69119706 | Msa0181030:CDS |
| GTACCACCGTCAAAGCGATT+AGG | 0.408204 | 1_4:+69122192 | None:intergenic |
| ATCTATGCAGAGGCCGCCTT+TGG | 0.412675 | 1_4:+69119585 | None:intergenic |
| GAATAGATGATAGAAGATAT+TGG | 0.414837 | 1_4:-69121946 | Msa0181030:CDS |
| GACATCTTTCTTAGTCATAG+TGG | 0.416582 | 1_4:+69122233 | None:intergenic |
| GAGAAAAGGGTTAGGTTCAA+AGG | 0.433803 | 1_4:+69122574 | None:intergenic |
| GGTAAAAGAGGAGATAGAAT+AGG | 0.437367 | 1_4:+69122595 | None:intergenic |
| ATCTCAGAGTGTTATTTGCA+TGG | 0.460843 | 1_4:-69119712 | Msa0181030:CDS |
| GTTAGGTTCAAAGGTAAAAG+AGG | 0.466771 | 1_4:+69122583 | None:intergenic |
| TCAAACCCACCTAAAATAAA+GGG | 0.468506 | 1_4:+69119372 | None:intergenic |
| TAGAATAGGTTAGAGATTGG+AGG | 0.474821 | 1_4:+69122609 | None:intergenic |
| AATTCATCATCATCAAGAAC+GGG | 0.479897 | 1_4:-69122444 | Msa0181030:CDS |
| AGTCTTTCTCTAAACACAGT+TGG | 0.483039 | 1_4:+69119547 | None:intergenic |
| ACGATGATCAAGTTCATGGC+TGG | 0.486450 | 1_4:-69119786 | Msa0181030:CDS |
| AATGATTAGAGAAAAGGGTT+AGG | 0.488957 | 1_4:+69122566 | None:intergenic |
| GGGAAAGTCATCAAAACGAT+TGG | 0.489012 | 1_4:-69119824 | Msa0181030:CDS |
| CTGATATATGCAAATTGGCT+AGG | 0.492079 | 1_4:-69122365 | Msa0181030:CDS |
| TCTCACCTGGATTCCTCAGT+TGG | 0.494511 | 1_4:+69121914 | None:intergenic |
| ACATTCCAACTGAGGAATCC+AGG | 0.495554 | 1_4:-69121919 | Msa0181030:intron |
| GTAGAGAGTTGGAATCTAAC+GGG | 0.506240 | 1_4:+69119754 | None:intergenic |
| TTTATATAGTTATATTAGAG+AGG | 0.510678 | 1_4:-69119477 | Msa0181030:three_prime_UTR |
| TGGTAATAAGCCCATTGCCC+TGG | 0.511634 | 1_4:+69119688 | None:intergenic |
| TGCAACGATGATCAAGTTCA+TGG | 0.517273 | 1_4:-69119790 | Msa0181030:CDS |
| AAAGTAAACTGCATACATAC+AGG | 0.519497 | 1_4:+69119335 | None:intergenic |
| ATAACTTTCAGACTCCAATT+GGG | 0.520543 | 1_4:-69119844 | Msa0181030:CDS |
| GGAAAGTCATCAAAACGATT+GGG | 0.522230 | 1_4:-69119823 | Msa0181030:CDS |
| TATTCACAGGTTCAAGAATG+TGG | 0.529110 | 1_4:-69119941 | Msa0181030:intron |
| CAATGGGCTTATTACCATGT+TGG | 0.535550 | 1_4:-69119682 | Msa0181030:CDS |
| TAATTCATCATCATCAAGAA+CGG | 0.545437 | 1_4:-69122445 | Msa0181030:CDS |
| CGATGATCAAGTTCATGGCT+GGG | 0.545852 | 1_4:-69119785 | Msa0181030:CDS |
| TGTCAACCTAATCGCTTTGA+CGG | 0.551447 | 1_4:-69122198 | Msa0181030:CDS |
| GCAAGAAACTTGTAGCATGA+TGG | 0.553327 | 1_4:+69122285 | None:intergenic |
| TCTCAGAGTGTTATTTGCAT+GGG | 0.559048 | 1_4:-69119711 | Msa0181030:CDS |
| GCCAATTTGCATATATCAGG+TGG | 0.562917 | 1_4:+69122369 | None:intergenic |
| GACCGTCCGATGTAGAGAGT+TGG | 0.563295 | 1_4:+69119743 | None:intergenic |
| ATATATACAGTTGTTATACA+AGG | 0.566583 | 1_4:-69119304 | None:intergenic |
| TGTAGAGAGTTGGAATCTAA+CGG | 0.566747 | 1_4:+69119753 | None:intergenic |
| CATATCTTCAACAAATGTGG+TGG | 0.568286 | 1_4:-69119918 | Msa0181030:CDS |
| TTTCAATTAATTCATTTATG+GGG | 0.568667 | 1_4:-69122518 | Msa0181030:exon |
| CTAGAGTTTGTATTCCCTGT+GGG | 0.569667 | 1_4:-69119877 | Msa0181030:CDS |
| TTATATAGTTATATTAGAGA+GGG | 0.570374 | 1_4:-69119476 | Msa0181030:three_prime_UTR |
| TGATATATGCAAATTGGCTA+GGG | 0.577318 | 1_4:-69122364 | Msa0181030:CDS |
| AGTGTTATTTGCATGGGCCA+GGG | 0.596672 | 1_4:-69119705 | Msa0181030:CDS |
| GTTATGCTGTAACTTCCCAC+AGG | 0.602467 | 1_4:+69119862 | None:intergenic |
| ATTGATTGTACTCATACCAA+AGG | 0.615939 | 1_4:-69119601 | Msa0181030:CDS |
| TTCCAACTCTCTACATCGGA+CGG | 0.616192 | 1_4:-69119745 | Msa0181030:CDS |
| CAACCTAATCGCTTTGACGG+TGG | 0.616958 | 1_4:-69122195 | Msa0181030:CDS |
| TTGGATTTACATTCCAACTG+AGG | 0.622680 | 1_4:-69121927 | Msa0181030:CDS |
| CAACCATGAAATCTCCAACA+TGG | 0.639418 | 1_4:+69119668 | None:intergenic |
| AAGAAGCTCTATGAAAAGCA+CGG | 0.646856 | 1_4:+69122337 | None:intergenic |
| GCTAGAGTTTGTATTCCCTG+TGG | 0.659976 | 1_4:-69119878 | Msa0181030:CDS |
| GATTGTACTCATACCAAAGG+CGG | 0.661351 | 1_4:-69119598 | Msa0181030:CDS |
| TGGCATATCTTCAACAAATG+TGG | 0.668014 | 1_4:-69119921 | Msa0181030:CDS |
| TGATTGCACTATCTATGCAG+AGG | 0.671933 | 1_4:+69119575 | None:intergenic |
| TAGATTCCAACTCTCTACAT+CGG | 0.677625 | 1_4:-69119749 | Msa0181030:CDS |
| ATATCTTCAACAAATGTGGT+GGG | 0.687256 | 1_4:-69119917 | Msa0181030:CDS |
| TTATGCTGTAACTTCCCACA+GGG | 0.694696 | 1_4:+69119863 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCAATTAATTCATTTA+TGG | - | chr1_4:69119433-69119452 | Msa0181030:three_prime_UTR | 10.0% |
| !!! | TTTTCAATTAATTCATTTAT+GGG | - | chr1_4:69119434-69119453 | Msa0181030:three_prime_UTR | 10.0% |
| !! | TTAACAAATATCTATTAAAA+TGG | - | chr1_4:69121441-69121460 | Msa0181030:intron | 10.0% |
| !! | AATAAAATGATTAGAGAAAA+GGG | + | chr1_4:69119395-69119414 | None:intergenic | 15.0% |
| !! | TTTCAATTAATTCATTTATG+GGG | - | chr1_4:69119435-69119454 | Msa0181030:three_prime_UTR | 15.0% |
| !! | TGAAGAAAAAAAAAATGAAA+AGG | + | chr1_4:69119873-69119892 | None:intergenic | 15.0% |
| !! | ACTATAGAAATGTATAAATA+TGG | - | chr1_4:69120067-69120086 | Msa0181030:intron | 15.0% |
| !!! | ATACTTTTTAAGAATGAATT+AGG | - | chr1_4:69120325-69120344 | Msa0181030:intron | 15.0% |
| !! | ATATGAAAATGTGTTTATAA+CGG | - | chr1_4:69120609-69120628 | Msa0181030:intron | 15.0% |
| !! | TTAAATTTCTACACTAAATT+TGG | + | chr1_4:69120663-69120682 | None:intergenic | 15.0% |
| !!! | TATAGAATAAAGTTTTCATT+AGG | + | chr1_4:69120788-69120807 | None:intergenic | 15.0% |
| !!! | ACATTATTTTGAAAATATGT+AGG | + | chr1_4:69120961-69120980 | None:intergenic | 15.0% |
| !! | TACAAATCAATTAAAATCAA+TGG | - | chr1_4:69120999-69121018 | Msa0181030:intron | 15.0% |
| !! | TCTTATCAAAAATAAACATT+AGG | - | chr1_4:69121844-69121863 | Msa0181030:intron | 15.0% |
| !!! | TTTTTATTTTTTGTATTCAC+AGG | - | chr1_4:69121999-69122018 | Msa0181030:CDS | 15.0% |
| !!! | AAAGAAAACTTGATTTTTAT+GGG | + | chr1_4:69122325-69122344 | None:intergenic | 15.0% |
| !! | TTTATATAGTTATATTAGAG+AGG | - | chr1_4:69122476-69122495 | Msa0181030:CDS | 15.0% |
| !! | TTATATAGTTATATTAGAGA+GGG | - | chr1_4:69122477-69122496 | Msa0181030:CDS | 15.0% |
| !! | GAATAAAATGATTAGAGAAA+AGG | + | chr1_4:69119396-69119415 | None:intergenic | 20.0% |
| !! | TTTCTTGCTTATAAATTTCT+TGG | - | chr1_4:69119683-69119702 | Msa0181030:CDS | 20.0% |
| !! | AAACAAAGATCAAATATAAG+AGG | + | chr1_4:69120102-69120121 | None:intergenic | 20.0% |
| !!! | GTTTCTTAATATTTTTCATG+TGG | - | chr1_4:69120698-69120717 | Msa0181030:intron | 20.0% |
| !!! | TTTTAAGAAAAAGCAGTTTT+TGG | - | chr1_4:69120819-69120838 | Msa0181030:intron | 20.0% |
| !!! | TTTAAGAAAAAGCAGTTTTT+GGG | - | chr1_4:69120820-69120839 | Msa0181030:intron | 20.0% |
| !! | AGATGAAAGTTTAATATGTT+CGG | - | chr1_4:69120864-69120883 | Msa0181030:intron | 20.0% |
| !! | TTGGTCAAATAATAAATAGT+AGG | - | chr1_4:69120895-69120914 | Msa0181030:intron | 20.0% |
| !!! | CTAAATGATATTTTAATCCA+TGG | + | chr1_4:69121053-69121072 | None:intergenic | 20.0% |
| !!! | CATTTAGTTTATTTTCATTG+AGG | - | chr1_4:69121066-69121085 | Msa0181030:intron | 20.0% |
| !!! | ATCTTTTCAAAGTCTTATAT+AGG | - | chr1_4:69121112-69121131 | Msa0181030:intron | 20.0% |
| !! | ATTAACCCTAAAAATTTAGA+AGG | - | chr1_4:69121137-69121156 | Msa0181030:intron | 20.0% |
| !!! | TAGCATTTTATGGATAATTT+AGG | - | chr1_4:69121332-69121351 | Msa0181030:intron | 20.0% |
| !! | AAGAAAAGCAGTAATATTAA+CGG | + | chr1_4:69121689-69121708 | None:intergenic | 20.0% |
| !! | TATCCTGTAAAAAAAAATAG+TGG | - | chr1_4:69121785-69121804 | Msa0181030:intron | 20.0% |
| !!! | TTTGCATTTTCAATTAGTTT+TGG | + | chr1_4:69121952-69121971 | None:intergenic | 20.0% |
| !! | AACTAATTGAAAATGCAAAA+TGG | - | chr1_4:69121953-69121972 | Msa0181030:CDS | 20.0% |
| !!! | CAAAGAAAACTTGATTTTTA+TGG | + | chr1_4:69122326-69122345 | None:intergenic | 20.0% |
| !!! | CATAAAAATCAAGTTTTCTT+TGG | - | chr1_4:69122324-69122343 | Msa0181030:CDS | 20.0% |
| ! | TAATTCATCATCATCAAGAA+CGG | - | chr1_4:69119508-69119527 | Msa0181030:three_prime_UTR | 25.0% |
| ! | TAAGATAGAGTAACTTACTT+TGG | + | chr1_4:69119786-69119805 | None:intergenic | 25.0% |
| ! | AAATCAAGGATGCTAAAATA+AGG | + | chr1_4:69119810-69119829 | None:intergenic | 25.0% |
| !!! | TCTTGATTTGTTTTTCTTTC+TGG | - | chr1_4:69119909-69119928 | Msa0181030:CDS | 25.0% |
| !!! | TTTGTTTTTCTTTCTGGTAT+AGG | - | chr1_4:69119915-69119934 | Msa0181030:CDS | 25.0% |
| ! | GAATAGATGATAGAAGATAT+TGG | - | chr1_4:69120007-69120026 | Msa0181030:intron | 25.0% |
| !! | ATTTTATGTAAACACAAAGC+AGG | + | chr1_4:69120220-69120239 | None:intergenic | 25.0% |
| !! | TTTGACTAACTTTTTAATGC+AGG | + | chr1_4:69120267-69120286 | None:intergenic | 25.0% |
| ! | TTGATGTGTGAATAATTTGA+TGG | + | chr1_4:69120399-69120418 | None:intergenic | 25.0% |
| ! | AAAATTTAGTCACCCTATAT+TGG | - | chr1_4:69120492-69120511 | Msa0181030:intron | 25.0% |
| ! | AAATTTAGTCACCCTATATT+GGG | - | chr1_4:69120493-69120512 | Msa0181030:intron | 25.0% |
| !!! | TTATACATGTTTAGTCTTGA+GGG | - | chr1_4:69120549-69120568 | Msa0181030:intron | 25.0% |
| ! | AATGTTTATAGAAGTGAAAG+TGG | - | chr1_4:69120976-69120995 | Msa0181030:intron | 25.0% |
| !! | CAGTTCCTTCTAAATTTTTA+GGG | + | chr1_4:69121145-69121164 | None:intergenic | 25.0% |
| !! | ACAGTTCCTTCTAAATTTTT+AGG | + | chr1_4:69121146-69121165 | None:intergenic | 25.0% |
| ! | TTAAAAGCCTATTTGCAAAT+TGG | - | chr1_4:69121289-69121308 | Msa0181030:intron | 25.0% |
| !!! | CAAATTGGCTTATGTTTTTA+TGG | - | chr1_4:69121304-69121323 | Msa0181030:intron | 25.0% |
| !! | TATGGTCAAATAGCATTTTA+TGG | - | chr1_4:69121322-69121341 | Msa0181030:intron | 25.0% |
| !! | ATGAAAATGACCTTTGTTTA+AGG | - | chr1_4:69121408-69121427 | Msa0181030:intron | 25.0% |
| !! | TGAAAATGACCTTTGTTTAA+GGG | - | chr1_4:69121409-69121428 | Msa0181030:intron | 25.0% |
| !! | TGAATTATACGCATTTTACT+TGG | - | chr1_4:69121623-69121642 | Msa0181030:intron | 25.0% |
| ! | ATCGCATATTATAATGAGAA+GGG | + | chr1_4:69121660-69121679 | None:intergenic | 25.0% |
| !!! | GTTAATATTACTGCTTTTCT+TGG | - | chr1_4:69121688-69121707 | Msa0181030:intron | 25.0% |
| !!! | TGACCACTATTTTTTTTTAC+AGG | + | chr1_4:69121791-69121810 | None:intergenic | 25.0% |
| ! | TTAGTATTAAGAAGTTTCTG+CGG | - | chr1_4:69121880-69121899 | Msa0181030:intron | 25.0% |
| ! | AAGACTCAAAAAATTATAGC+TGG | - | chr1_4:69122423-69122442 | Msa0181030:CDS | 25.0% |
| AGATAGAATAGGTTAGAGAT+TGG | + | chr1_4:69119350-69119369 | None:intergenic | 30.0% | |
| AATGATTAGAGAAAAGGGTT+AGG | + | chr1_4:69119390-69119409 | None:intergenic | 30.0% | |
| AATTCATCATCATCAAGAAC+GGG | - | chr1_4:69119509-69119528 | Msa0181030:three_prime_UTR | 30.0% | |
| TGATATATGCAAATTGGCTA+GGG | - | chr1_4:69119589-69119608 | Msa0181030:CDS | 30.0% | |
| TGAAGCTAAGTGAAAAATCA+AGG | + | chr1_4:69119824-69119843 | None:intergenic | 30.0% | |
| !! | TCTGGTATAGGAAGTTTTAT+TGG | - | chr1_4:69119927-69119946 | Msa0181030:CDS | 30.0% |
| ! | TCAAAGTCTTTGAAGATAAC+AGG | - | chr1_4:69119985-69120004 | Msa0181030:intron | 30.0% |
| !!! | TTATTTTGACCCTGTTTTGA+AGG | - | chr1_4:69120122-69120141 | Msa0181030:intron | 30.0% |
| GACACACATTGAAAATGTTT+AGG | + | chr1_4:69120186-69120205 | None:intergenic | 30.0% | |
| ATGTGTGAATAATTTGATGG+TGG | + | chr1_4:69120396-69120415 | None:intergenic | 30.0% | |
| ! | CAAATAGTTTGTGTAAGAGA+AGG | - | chr1_4:69120421-69120440 | Msa0181030:intron | 30.0% |
| ATAGTTGTTGACCCAATATA+GGG | + | chr1_4:69120507-69120526 | None:intergenic | 30.0% | |
| CAAGACTAAACATGTATAAG+AGG | + | chr1_4:69120548-69120567 | None:intergenic | 30.0% | |
| !! | CTTATACATGTTTAGTCTTG+AGG | - | chr1_4:69120548-69120567 | Msa0181030:intron | 30.0% |
| !!! | AATATGTTCGGCTCTTTTTT+TGG | - | chr1_4:69120876-69120895 | Msa0181030:intron | 30.0% |
| ! | GGTTTGTTCAGATTATTCTT+TGG | + | chr1_4:69121032-69121051 | None:intergenic | 30.0% |
| AGAATAATCTGAACAAACCA+TGG | - | chr1_4:69121033-69121052 | Msa0181030:intron | 30.0% | |
| ! | TTAGAAGGAACTGTTGTTTA+AGG | - | chr1_4:69121152-69121171 | Msa0181030:intron | 30.0% |
| ! | ACATTTTCCTGAAATTACGA+TGG | - | chr1_4:69121220-69121239 | Msa0181030:intron | 30.0% |
| ACATAAGCCAATTTGCAAAT+AGG | + | chr1_4:69121299-69121318 | None:intergenic | 30.0% | |
| CATTACTTTCCCTTAAACAA+AGG | + | chr1_4:69121421-69121440 | None:intergenic | 30.0% | |
| CATATTCCACGAATAGAATA+TGG | + | chr1_4:69121486-69121505 | None:intergenic | 30.0% | |
| CAAAGACACTTCACATAATT+GGG | + | chr1_4:69121554-69121573 | None:intergenic | 30.0% | |
| TCGCATATTATAATGAGAAG+GGG | + | chr1_4:69121659-69121678 | None:intergenic | 30.0% | |
| GATCGCATATTATAATGAGA+AGG | + | chr1_4:69121661-69121680 | None:intergenic | 30.0% | |
| TTCTTGGAATATATCCCAAT+TGG | - | chr1_4:69121704-69121723 | Msa0181030:intron | 30.0% | |
| TGTTTGTCTACAAACCAATT+GGG | + | chr1_4:69121721-69121740 | None:intergenic | 30.0% | |
| ATATCTTCAACAAATGTGGT+GGG | - | chr1_4:69122036-69122055 | Msa0181030:intron | 30.0% | |
| ATAACTTTCAGACTCCAATT+GGG | - | chr1_4:69122109-69122128 | Msa0181030:intron | 30.0% | |
| ! | TTGATTTTTATGGGCTCATT+GGG | + | chr1_4:69122316-69122335 | None:intergenic | 30.0% |
| ATTGATTGTACTCATACCAA+AGG | - | chr1_4:69122352-69122371 | Msa0181030:CDS | 30.0% | |
| !!! | TCAAGTTAGCCCTTTATTTT+AGG | - | chr1_4:69122572-69122591 | Msa0181030:five_prime_UTR | 30.0% |
| TCAAACCCACCTAAAATAAA+GGG | + | chr1_4:69122584-69122603 | None:intergenic | 30.0% | |
| AAAGTAAACTGCATACATAC+AGG | + | chr1_4:69122621-69122640 | None:intergenic | 30.0% | |
| TAGAATAGGTTAGAGATTGG+AGG | + | chr1_4:69119347-69119366 | None:intergenic | 35.0% | |
| GGTAAAAGAGGAGATAGAAT+AGG | + | chr1_4:69119361-69119380 | None:intergenic | 35.0% | |
| GTTAGGTTCAAAGGTAAAAG+AGG | + | chr1_4:69119373-69119392 | None:intergenic | 35.0% | |
| TCCACCTGATATATGCAAAT+TGG | - | chr1_4:69119583-69119602 | Msa0181030:CDS | 35.0% | |
| CTAGCCAATTTGCATATATC+AGG | + | chr1_4:69119590-69119609 | None:intergenic | 35.0% | |
| CTGATATATGCAAATTGGCT+AGG | - | chr1_4:69119588-69119607 | Msa0181030:CDS | 35.0% | |
| AAGAAGCTCTATGAAAAGCA+CGG | + | chr1_4:69119619-69119638 | None:intergenic | 35.0% | |
| !!! | TTCTTCTGCTGATTTTGTGT+GGG | - | chr1_4:69119634-69119653 | Msa0181030:CDS | 35.0% |
| GACATCTTTCTTAGTCATAG+TGG | + | chr1_4:69119723-69119742 | None:intergenic | 35.0% | |
| !! | GTTTTATTGGACAAATGCAG+TGG | - | chr1_4:69119940-69119959 | Msa0181030:intron | 35.0% |
| TTGGATTTACATTCCAACTG+AGG | - | chr1_4:69120026-69120045 | Msa0181030:intron | 35.0% | |
| GAAACATAGCCTTCAAAACA+GGG | + | chr1_4:69120134-69120153 | None:intergenic | 35.0% | |
| AGAAACATAGCCTTCAAAAC+AGG | + | chr1_4:69120135-69120154 | None:intergenic | 35.0% | |
| !!! | TGTTTTGAAGGCTATGTTTC+TGG | - | chr1_4:69120134-69120153 | Msa0181030:intron | 35.0% |
| !! | TTTGATGGTGGCTAAATTGA+TGG | + | chr1_4:69120384-69120403 | None:intergenic | 35.0% |
| ! | TAGTTTGTGTAAGAGAAGGT+TGG | - | chr1_4:69120425-69120444 | Msa0181030:intron | 35.0% |
| TCTCACATTGAAATGAGACA+AGG | - | chr1_4:69120464-69120483 | Msa0181030:intron | 35.0% | |
| GATAGTTGTTGACCCAATAT+AGG | + | chr1_4:69120508-69120527 | None:intergenic | 35.0% | |
| TGTGTTTATAACGGTGTATG+CGG | - | chr1_4:69120618-69120637 | Msa0181030:intron | 35.0% | |
| AAAGCTTCCATCGTAATTTC+AGG | + | chr1_4:69121230-69121249 | None:intergenic | 35.0% | |
| CTCATAAAGAAACTGCCATA+GGG | + | chr1_4:69121257-69121276 | None:intergenic | 35.0% | |
| CTATGGCAGTTTCTTTATGA+GGG | - | chr1_4:69121256-69121275 | Msa0181030:intron | 35.0% | |
| TATGGCAGTTTCTTTATGAG+GGG | - | chr1_4:69121257-69121276 | Msa0181030:intron | 35.0% | |
| CCAAAGACACTTCACATAAT+TGG | + | chr1_4:69121555-69121574 | None:intergenic | 35.0% | |
| ! | CCAATTATGTGAAGTGTCTT+TGG | - | chr1_4:69121552-69121571 | Msa0181030:intron | 35.0% |
| GCATATTATAATGAGAAGGG+GGG | + | chr1_4:69121657-69121676 | None:intergenic | 35.0% | |
| CGCATATTATAATGAGAAGG+GGG | + | chr1_4:69121658-69121677 | None:intergenic | 35.0% | |
| AGCAGTAATATTAACGGTTG+AGG | + | chr1_4:69121683-69121702 | None:intergenic | 35.0% | |
| CTGTTTGTCTACAAACCAAT+TGG | + | chr1_4:69121722-69121741 | None:intergenic | 35.0% | |
| TATTCACAGGTTCAAGAATG+TGG | - | chr1_4:69122012-69122031 | Msa0181030:CDS | 35.0% | |
| TGGCATATCTTCAACAAATG+TGG | - | chr1_4:69122032-69122051 | Msa0181030:intron | 35.0% | |
| CATATCTTCAACAAATGTGG+TGG | - | chr1_4:69122035-69122054 | Msa0181030:intron | 35.0% | |
| CATAACTTTCAGACTCCAAT+TGG | - | chr1_4:69122108-69122127 | Msa0181030:intron | 35.0% | |
| !! | GTTTTGATGACTTTCCCAAT+TGG | + | chr1_4:69122126-69122145 | None:intergenic | 35.0% |
| GGAAAGTCATCAAAACGATT+GGG | - | chr1_4:69122130-69122149 | Msa0181030:intron | 35.0% | |
| TGTAGAGAGTTGGAATCTAA+CGG | + | chr1_4:69122203-69122222 | None:intergenic | 35.0% | |
| TAGATTCCAACTCTCTACAT+CGG | - | chr1_4:69122204-69122223 | Msa0181030:CDS | 35.0% | |
| !! | ATCTCAGAGTGTTATTTGCA+TGG | - | chr1_4:69122241-69122260 | Msa0181030:CDS | 35.0% |
| !! | TCTCAGAGTGTTATTTGCAT+GGG | - | chr1_4:69122242-69122261 | Msa0181030:CDS | 35.0% |
| TTACCATGTTGGAGATTTCA+TGG | - | chr1_4:69122282-69122301 | Msa0181030:CDS | 35.0% | |
| ! | CTTGATTTTTATGGGCTCAT+TGG | + | chr1_4:69122317-69122336 | None:intergenic | 35.0% |
| AGTCTTTCTCTAAACACAGT+TGG | + | chr1_4:69122409-69122428 | None:intergenic | 35.0% | |
| !!! | AGTTAGCCCTTTATTTTAGG+TGG | - | chr1_4:69122575-69122594 | Msa0181030:five_prime_UTR | 35.0% |
| !!! | GTTAGCCCTTTATTTTAGGT+GGG | - | chr1_4:69122576-69122595 | Msa0181030:five_prime_UTR | 35.0% |
| CTCAAACCCACCTAAAATAA+AGG | + | chr1_4:69122585-69122604 | None:intergenic | 35.0% | |
| GAGAAAAGGGTTAGGTTCAA+AGG | + | chr1_4:69119382-69119401 | None:intergenic | 40.0% | |
| TGGATCAAGATGCATGAGTA+TGG | + | chr1_4:69119567-69119586 | None:intergenic | 40.0% | |
| GCCAATTTGCATATATCAGG+TGG | + | chr1_4:69119587-69119606 | None:intergenic | 40.0% | |
| !!! | CTTCTTCTGCTGATTTTGTG+TGG | - | chr1_4:69119633-69119652 | Msa0181030:CDS | 40.0% |
| GCAAGAAACTTGTAGCATGA+TGG | + | chr1_4:69119671-69119690 | None:intergenic | 40.0% | |
| TGTCAACCTAATCGCTTTGA+CGG | - | chr1_4:69119755-69119774 | Msa0181030:CDS | 40.0% | |
| TGTTTAGGAGTCAAGACACA+TGG | + | chr1_4:69120171-69120190 | None:intergenic | 40.0% | |
| ! | TATTTTTCATGTGGCAGCTG+AGG | - | chr1_4:69120707-69120726 | Msa0181030:intron | 40.0% |
| CCTCATAAAGAAACTGCCAT+AGG | + | chr1_4:69121258-69121277 | None:intergenic | 40.0% | |
| CCTATGGCAGTTTCTTTATG+AGG | - | chr1_4:69121255-69121274 | Msa0181030:intron | 40.0% | |
| ATGGCAGTTTCTTTATGAGG+GGG | - | chr1_4:69121258-69121277 | Msa0181030:intron | 40.0% | |
| GCAATGCCATATTCTATTCG+TGG | - | chr1_4:69121477-69121496 | Msa0181030:intron | 40.0% | |
| ! | TGGGCAAATAGAAGCTTTTG+TGG | + | chr1_4:69121535-69121554 | None:intergenic | 40.0% |
| !! | ATGTGGTGGGTTGAAGTAAT+AGG | - | chr1_4:69122049-69122068 | Msa0181030:intron | 40.0% |
| CTAGAGTTTGTATTCCCTGT+GGG | - | chr1_4:69122076-69122095 | Msa0181030:intron | 40.0% | |
| TTATGCTGTAACTTCCCACA+GGG | + | chr1_4:69122093-69122112 | None:intergenic | 40.0% | |
| GGGAAAGTCATCAAAACGAT+TGG | - | chr1_4:69122129-69122148 | Msa0181030:intron | 40.0% | |
| TGCAACGATGATCAAGTTCA+TGG | - | chr1_4:69122163-69122182 | Msa0181030:intron | 40.0% | |
| GTAGAGAGTTGGAATCTAAC+GGG | + | chr1_4:69122202-69122221 | None:intergenic | 40.0% | |
| ! | CAATGGGCTTATTACCATGT+TGG | - | chr1_4:69122271-69122290 | Msa0181030:CDS | 40.0% |
| CAACCATGAAATCTCCAACA+TGG | + | chr1_4:69122288-69122307 | None:intergenic | 40.0% | |
| GATTGTACTCATACCAAAGG+CGG | - | chr1_4:69122355-69122374 | Msa0181030:CDS | 40.0% | |
| TGATTGCACTATCTATGCAG+AGG | + | chr1_4:69122381-69122400 | None:intergenic | 40.0% | |
| ACATTCCAACTGAGGAATCC+AGG | - | chr1_4:69120034-69120053 | Msa0181030:intron | 45.0% | |
| TCTATAGTGCATCTCTCACC+TGG | + | chr1_4:69120055-69120074 | None:intergenic | 45.0% | |
| GTTTATAACGGTGTATGCGG+TGG | - | chr1_4:69120621-69120640 | Msa0181030:intron | 45.0% | |
| GTGTATGCGGTGGACAATAA+GGG | - | chr1_4:69120631-69120650 | Msa0181030:intron | 45.0% | |
| ATGTGGCAGCTGAGGTAAAA+GGG | - | chr1_4:69120715-69120734 | Msa0181030:intron | 45.0% | |
| ATGGAAGCTTTCTCACCCTA+TGG | - | chr1_4:69121239-69121258 | Msa0181030:intron | 45.0% | |
| GCTAGAGTTTGTATTCCCTG+TGG | - | chr1_4:69122075-69122094 | Msa0181030:intron | 45.0% | |
| GTTATGCTGTAACTTCCCAC+AGG | + | chr1_4:69122094-69122113 | None:intergenic | 45.0% | |
| ACGATGATCAAGTTCATGGC+TGG | - | chr1_4:69122167-69122186 | Msa0181030:intron | 45.0% | |
| CGATGATCAAGTTCATGGCT+GGG | - | chr1_4:69122168-69122187 | Msa0181030:intron | 45.0% | |
| TTCCAACTCTCTACATCGGA+CGG | - | chr1_4:69122208-69122227 | Msa0181030:CDS | 45.0% | |
| !! | AGTGTTATTTGCATGGGCCA+GGG | - | chr1_4:69122248-69122267 | Msa0181030:CDS | 45.0% |
| !! | ATATATTATATTAATAAACT+TGG | - | chr1_4:69121584-69121603 | Msa0181030:intron | 5.0% |
| !! | TATATTATATTAATAAACTT+GGG | - | chr1_4:69121585-69121604 | Msa0181030:intron | 5.0% |
| CAACCTAATCGCTTTGACGG+TGG | - | chr1_4:69119758-69119777 | Msa0181030:CDS | 50.0% | |
| GTACCACCGTCAAAGCGATT+AGG | + | chr1_4:69119764-69119783 | None:intergenic | 50.0% | |
| TCTCACCTGGATTCCTCAGT+TGG | + | chr1_4:69120042-69120061 | None:intergenic | 50.0% | |
| GGTGTATGCGGTGGACAATA+AGG | - | chr1_4:69120630-69120649 | Msa0181030:intron | 50.0% | |
| CATGTGGCAGCTGAGGTAAA+AGG | - | chr1_4:69120714-69120733 | Msa0181030:intron | 50.0% | |
| TGTGGCAGCTGAGGTAAAAG+GGG | - | chr1_4:69120716-69120735 | Msa0181030:intron | 50.0% | |
| !! | GAGTGTTATTTGCATGGGCC+AGG | - | chr1_4:69122247-69122266 | Msa0181030:CDS | 50.0% |
| TGGTAATAAGCCCATTGCCC+TGG | + | chr1_4:69122268-69122287 | None:intergenic | 50.0% | |
| GTGGCAGCTGAGGTAAAAGG+GGG | - | chr1_4:69120717-69120736 | Msa0181030:intron | 55.0% | |
| TGGCAGCTGAGGTAAAAGGG+GGG | - | chr1_4:69120718-69120737 | Msa0181030:intron | 55.0% | |
| GACCGTCCGATGTAGAGAGT+TGG | + | chr1_4:69122213-69122232 | None:intergenic | 55.0% | |
| ATTTGCATGGGCCAGGGCAA+TGG | - | chr1_4:69122254-69122273 | Msa0181030:CDS | 55.0% | |
| TTTGCATGGGCCAGGGCAAT+GGG | - | chr1_4:69122255-69122274 | Msa0181030:CDS | 55.0% | |
| ATCTATGCAGAGGCCGCCTT+TGG | + | chr1_4:69122371-69122390 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 69119307 | 69122668 | 69119307 | ID=Msa0181030;Name=Msa0181030 |
| chr1_4 | mRNA | 69119307 | 69122668 | 69119307 | ID=Msa0181030-mRNA-1;Parent=Msa0181030;Name=Msa0181030-mRNA-1;_AED=0.01;_eAED=0.01;_QI=145|1|1|1|1|1|3|227|291 |
| chr1_4 | exon | 69119307 | 69119954 | 69119307 | ID=Msa0181030-mRNA-1:exon:22967;Parent=Msa0181030-mRNA-1 |
| chr1_4 | exon | 69121920 | 69122038 | 69121920 | ID=Msa0181030-mRNA-1:exon:22966;Parent=Msa0181030-mRNA-1 |
| chr1_4 | exon | 69122188 | 69122668 | 69122188 | ID=Msa0181030-mRNA-1:exon:22965;Parent=Msa0181030-mRNA-1 |
| chr1_4 | five_prime_UTR | 69122524 | 69122668 | 69122524 | ID=Msa0181030-mRNA-1:five_prime_utr;Parent=Msa0181030-mRNA-1 |
| chr1_4 | CDS | 69122188 | 69122523 | 69122188 | ID=Msa0181030-mRNA-1:cds;Parent=Msa0181030-mRNA-1 |
| chr1_4 | CDS | 69121920 | 69122038 | 69121920 | ID=Msa0181030-mRNA-1:cds;Parent=Msa0181030-mRNA-1 |
| chr1_4 | CDS | 69119534 | 69119954 | 69119534 | ID=Msa0181030-mRNA-1:cds;Parent=Msa0181030-mRNA-1 |
| chr1_4 | three_prime_UTR | 69119307 | 69119533 | 69119307 | ID=Msa0181030-mRNA-1:three_prime_utr;Parent=Msa0181030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
