AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1423180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423180 MtrunA17_Chr1g0203751 94.845 291 15 0 1 291 1 291 0.0 547
Msa1423180 MtrunA17_Chr6g0472801 72.792 283 77 0 9 291 3 285 2.16e-157 440
Msa1423180 MtrunA17_Chr8g0350401 58.803 284 106 3 1 279 1 278 1.92e-122 352
Msa1423180 MtrunA17_Chr4g0057281 61.154 260 100 1 28 286 19 278 1.82e-118 341
Msa1423180 MtrunA17_Chr5g0397981 54.225 284 125 3 4 286 14 293 1.04e-110 322
Msa1423180 MtrunA17_Chr7g0265551 52.013 298 123 2 1 287 73 361 9.35e-109 320
Msa1423180 MtrunA17_Chr7g0272101 22.711 273 179 6 31 286 4 261 6.39e-25 100
Msa1423180 MtrunA17_Chr7g0272091 25.000 284 185 6 23 281 2 282 8.69e-24 97.8
Msa1423180 MtrunA17_Chr1g0189671 28.755 233 150 4 26 257 2 219 1.39e-23 97.1
Msa1423180 MtrunA17_Chr1g0203281 28.421 285 164 8 26 283 2 273 2.18e-23 96.7
Msa1423180 MtrunA17_Chr1g0189591 37.762 143 86 2 30 169 15 157 1.30e-22 95.1
Msa1423180 MtrunA17_Chr4g0010881 23.735 257 174 6 31 285 4 240 1.70e-22 93.6
Msa1423180 MtrunA17_Chr1g0189821 36.620 142 88 2 30 169 6 147 4.14e-22 93.2
Msa1423180 MtrunA17_Chr1g0189611 34.932 146 93 2 26 169 2 147 2.84e-21 90.9
Msa1423180 MtrunA17_Chr1g0192371 34.266 143 92 2 31 171 11 153 4.84e-20 87.8
Msa1423180 MtrunA17_Chr1g0203331 37.984 129 77 2 45 172 6 132 3.75e-19 84.3
Msa1423180 MtrunA17_Chr1g0189751 34.667 150 95 2 26 174 2 149 2.76e-18 83.2
Msa1423180 MtrunA17_Chr1g0189721 32.530 166 105 4 26 186 2 165 3.47e-18 82.4
Msa1423180 MtrunA17_Chr3g0097191 28.674 279 152 9 28 281 10 266 3.96e-18 82.0
Msa1423180 MtrunA17_Chr1g0189641 27.426 237 151 5 26 255 2 224 3.31e-17 79.7
Msa1423180 MtrunA17_Chr1g0189621 32.877 146 94 3 30 174 6 148 6.33e-17 78.6
Msa1423180 MtrunA17_Chr1g0189781 32.639 144 94 2 31 171 11 154 5.03e-15 73.6
Msa1423180 MtrunA17_Chr3g0095261 27.018 285 165 10 28 281 10 282 2.44e-14 71.6
Msa1423180 MtrunA17_Chr1g0190071 31.034 145 97 2 30 171 6 150 4.15e-14 71.2
Msa1423180 MtrunA17_Chr1g0189771 28.662 157 109 2 18 171 2 158 3.04e-13 66.6
Msa1423180 MtrunA17_Chr1g0189661 31.944 144 96 2 30 171 6 149 4.99e-13 68.2
Msa1423180 MtrunA17_Chr3g0078331 30.000 160 92 5 26 169 15 170 3.58e-11 62.8
Msa1423180 MtrunA17_Chr1g0189711 32.886 149 86 6 30 169 6 149 4.46e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423180 AT3G61060.1 59.574 282 110 3 1 281 1 279 1.92e-126 362
Msa1423180 AT3G61060.2 59.364 283 110 4 1 281 1 280 1.18e-124 357
Msa1423180 AT5G52120.1 55.019 269 115 1 27 289 20 288 1.82e-110 322
Msa1423180 AT1G12710.1 56.296 270 112 3 25 291 25 291 1.21e-104 306
Msa1423180 AT1G63090.1 54.104 268 121 2 25 291 23 289 1.63e-100 296
Msa1423180 AT3G53000.1 48.973 292 130 3 1 281 1 284 2.52e-97 288
Msa1423180 AT1G12710.2 48.718 312 112 4 25 291 25 333 1.30e-95 285
Msa1423180 AT1G09155.1 27.586 203 131 3 31 231 3 191 2.58e-21 91.7
Msa1423180 AT2G02360.1 37.681 138 80 2 33 169 19 151 2.74e-21 91.3
Msa1423180 AT2G02240.1 28.777 278 148 8 31 282 64 317 3.12e-19 86.3
Msa1423180 AT2G02230.1 32.278 158 99 3 15 171 21 171 5.00e-19 86.3
Msa1423180 AT5G24560.1 27.160 162 106 3 30 184 5 161 4.17e-18 80.9
Msa1423180 AT1G80110.1 25.746 268 174 7 28 282 1 256 2.72e-17 80.1
Msa1423180 AT2G02340.1 30.994 171 102 4 19 181 27 189 3.79e-17 80.5
Msa1423180 AT2G02310.1 35.878 131 78 2 30 159 47 172 1.50e-16 78.6
Msa1423180 AT2G02350.2 30.769 156 101 3 13 166 9 159 1.71e-16 78.6
Msa1423180 AT2G02250.1 29.714 175 113 4 2 171 18 187 4.74e-16 77.4
Msa1423180 AT1G56250.1 24.468 282 177 8 31 281 4 280 5.67e-15 73.9
Msa1423180 AT1G56240.1 22.603 292 170 6 31 281 4 280 6.01e-14 70.9
Msa1423180 AT2G02300.1 29.801 151 101 2 22 171 28 174 3.41e-11 63.2

Find 71 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTGCTTATAAATTTCT+TGG 0.233636 tig0025513:+61346 Msa1423180:CDS
CTCAAACCCACCTAAAATAA+AGG 0.284259 tig0025513:-64502 None:intergenic
TCCACCTGATATATGCAAAT+TGG 0.341137 tig0025513:+61246 Msa1423180:CDS
CATAACTTTCAGACTCCAAT+TGG 0.346494 tig0025513:+64028 Msa1423180:CDS
TTACCATGTTGGAGATTTCA+TGG 0.347440 tig0025513:+64202 Msa1423180:CDS
AGATAGAATAGGTTAGAGAT+TGG 0.354650 tig0025513:-61010 None:intergenic
ATGTGGTGGGTTGAAGTAAT+AGG 0.354758 tig0025513:+63969 Msa1423180:CDS
TCAAAGTCTTTGAAGATAAC+AGG 0.357934 tig0025513:+61637 Msa1423180:CDS
ATTTGCATGGGCCAGGGCAA+TGG 0.362661 tig0025513:+64174 Msa1423180:CDS
AATAAAATGATTAGAGAAAA+GGG 0.385177 tig0025513:-61055 None:intergenic
TGGATCAAGATGCATGAGTA+TGG 0.388988 tig0025513:-61227 None:intergenic
CTAGCCAATTTGCATATATC+AGG 0.392374 tig0025513:-61250 None:intergenic
GAATAAAATGATTAGAGAAA+AGG 0.394648 tig0025513:-61056 None:intergenic
TTTGCATGGGCCAGGGCAAT+GGG 0.397867 tig0025513:+64175 Msa1423180:CDS
GAGTGTTATTTGCATGGGCC+AGG 0.404946 tig0025513:+64167 Msa1423180:CDS
GTACCACCGTCAAAGCGATT+AGG 0.408204 tig0025513:-61424 None:intergenic
ATCTATGCAGAGGCCGCCTT+TGG 0.412675 tig0025513:-64288 None:intergenic
GAATAGATGATAGAAGATAT+TGG 0.414837 tig0025513:+61659 Msa1423180:CDS
GACATCTTTCTTAGTCATAG+TGG 0.416582 tig0025513:-61383 None:intergenic
GAGAAAAGGGTTAGGTTCAA+AGG 0.433803 tig0025513:-61042 None:intergenic
GGTAAAAGAGGAGATAGAAT+AGG 0.437367 tig0025513:-61021 None:intergenic
ATCTCAGAGTGTTATTTGCA+TGG 0.460843 tig0025513:+64161 Msa1423180:CDS
GTTAGGTTCAAAGGTAAAAG+AGG 0.466771 tig0025513:-61033 None:intergenic
TCAAACCCACCTAAAATAAA+GGG 0.468506 tig0025513:-64501 None:intergenic
TAGAATAGGTTAGAGATTGG+AGG 0.474821 tig0025513:-61007 None:intergenic
AATTCATCATCATCAAGAAC+GGG 0.479897 tig0025513:+61172 Msa1423180:CDS
AGTCTTTCTCTAAACACAGT+TGG 0.483039 tig0025513:-64326 None:intergenic
ACGATGATCAAGTTCATGGC+TGG 0.486450 tig0025513:+64087 Msa1423180:CDS
AATGATTAGAGAAAAGGGTT+AGG 0.488957 tig0025513:-61050 None:intergenic
GGGAAAGTCATCAAAACGAT+TGG 0.489012 tig0025513:+64049 Msa1423180:CDS
CTGATATATGCAAATTGGCT+AGG 0.492079 tig0025513:+61251 Msa1423180:CDS
TCTCACCTGGATTCCTCAGT+TGG 0.494511 tig0025513:-61691 None:intergenic
ACATTCCAACTGAGGAATCC+AGG 0.495554 tig0025513:+61686 Msa1423180:CDS
GTAGAGAGTTGGAATCTAAC+GGG 0.506240 tig0025513:-64119 None:intergenic
TTTATATAGTTATATTAGAG+AGG 0.510678 tig0025513:+64396 Msa1423180:three_prime_UTR
TGGTAATAAGCCCATTGCCC+TGG 0.511634 tig0025513:-64185 None:intergenic
TGCAACGATGATCAAGTTCA+TGG 0.517273 tig0025513:+64083 Msa1423180:CDS
AAAGTAAACTGCATACATAC+AGG 0.519497 tig0025513:-64538 None:intergenic
ATAACTTTCAGACTCCAATT+GGG 0.520543 tig0025513:+64029 Msa1423180:CDS
GGAAAGTCATCAAAACGATT+GGG 0.522230 tig0025513:+64050 Msa1423180:CDS
TATTCACAGGTTCAAGAATG+TGG 0.529110 tig0025513:+63932 Msa1423180:intron
CAATGGGCTTATTACCATGT+TGG 0.535550 tig0025513:+64191 Msa1423180:CDS
TAATTCATCATCATCAAGAA+CGG 0.545437 tig0025513:+61171 Msa1423180:CDS
CGATGATCAAGTTCATGGCT+GGG 0.545852 tig0025513:+64088 Msa1423180:CDS
TGTCAACCTAATCGCTTTGA+CGG 0.551447 tig0025513:+61418 Msa1423180:CDS
GCAAGAAACTTGTAGCATGA+TGG 0.553327 tig0025513:-61331 None:intergenic
TCTCAGAGTGTTATTTGCAT+GGG 0.559048 tig0025513:+64162 Msa1423180:CDS
GCCAATTTGCATATATCAGG+TGG 0.562917 tig0025513:-61247 None:intergenic
GACCGTCCGATGTAGAGAGT+TGG 0.563295 tig0025513:-64130 None:intergenic
ATATATACAGTTGTTATACA+AGG 0.566583 tig0025513:+64569 Msa1423180:three_prime_UTR
TGTAGAGAGTTGGAATCTAA+CGG 0.566747 tig0025513:-64120 None:intergenic
CATATCTTCAACAAATGTGG+TGG 0.568286 tig0025513:+63955 Msa1423180:CDS
TTTCAATTAATTCATTTATG+GGG 0.568667 tig0025513:+61098 Msa1423180:exon
CTAGAGTTTGTATTCCCTGT+GGG 0.569667 tig0025513:+63996 Msa1423180:CDS
TTATATAGTTATATTAGAGA+GGG 0.570374 tig0025513:+64397 Msa1423180:three_prime_UTR
TGATATATGCAAATTGGCTA+GGG 0.577318 tig0025513:+61252 Msa1423180:CDS
AGTGTTATTTGCATGGGCCA+GGG 0.596672 tig0025513:+64168 Msa1423180:CDS
GTTATGCTGTAACTTCCCAC+AGG 0.602467 tig0025513:-64011 None:intergenic
ATTGATTGTACTCATACCAA+AGG 0.615939 tig0025513:+64272 Msa1423180:CDS
TTCCAACTCTCTACATCGGA+CGG 0.616192 tig0025513:+64128 Msa1423180:CDS
CAACCTAATCGCTTTGACGG+TGG 0.616958 tig0025513:+61421 Msa1423180:CDS
TTGGATTTACATTCCAACTG+AGG 0.622680 tig0025513:+61678 Msa1423180:CDS
CAACCATGAAATCTCCAACA+TGG 0.639418 tig0025513:-64205 None:intergenic
AAGAAGCTCTATGAAAAGCA+CGG 0.646856 tig0025513:-61279 None:intergenic
GCTAGAGTTTGTATTCCCTG+TGG 0.659976 tig0025513:+63995 Msa1423180:CDS
GATTGTACTCATACCAAAGG+CGG 0.661351 tig0025513:+64275 Msa1423180:CDS
TGGCATATCTTCAACAAATG+TGG 0.668014 tig0025513:+63952 Msa1423180:CDS
TGATTGCACTATCTATGCAG+AGG 0.671933 tig0025513:-64298 None:intergenic
TAGATTCCAACTCTCTACAT+CGG 0.677625 tig0025513:+64124 Msa1423180:CDS
ATATCTTCAACAAATGTGGT+GGG 0.687256 tig0025513:+63956 Msa1423180:CDS
TTATGCTGTAACTTCCCACA+GGG 0.694696 tig0025513:-64010 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCAATTAATTCATTTA+TGG + tig0025513:61096-61115 Msa1423180:exon 10.0%
!!! TTTTCAATTAATTCATTTAT+GGG + tig0025513:61097-61116 Msa1423180:exon 10.0%
!! TTAACAAATATCTATTAAAA+TGG + tig0025513:63362-63381 Msa1423180:intron 10.0%
!! AATAAAATGATTAGAGAAAA+GGG - tig0025513:61058-61077 None:intergenic 15.0%
!! TTTCAATTAATTCATTTATG+GGG + tig0025513:61098-61117 Msa1423180:exon 15.0%
!! TGAAGAAAAAAAAAATCAAA+AGG - tig0025513:61525-61544 None:intergenic 15.0%
!! ACTATAGAAATGTATAAATA+TGG + tig0025513:61719-61738 Msa1423180:intron 15.0%
!!! ATACTTTTTAAGAATGAATT+AGG + tig0025513:61977-61996 Msa1423180:intron 15.0%
!! ATATGAAAATGTGTTTATAA+CGG + tig0025513:62261-62280 Msa1423180:intron 15.0%
!! TTAAATTTCTACACTAAATT+TGG - tig0025513:62315-62334 None:intergenic 15.0%
!!! TATAGAATAAAGTTTTCATT+AGG - tig0025513:62440-62459 None:intergenic 15.0%
!!! TTGATTTTAATTGATTTGTA+CGG - tig0025513:62659-62678 None:intergenic 15.0%
!! TACAAATCAATTAAAATCAA+TGG + tig0025513:62659-62678 Msa1423180:intron 15.0%
!!! TAAATGATATTTTAATCCAT+GGG - tig0025513:62713-62732 None:intergenic 15.0%
!! AATTTCTTGATAAAATCTAA+GGG + tig0025513:62929-62948 Msa1423180:intron 15.0%
!! TCTTATCAAAAATAAACATT+AGG + tig0025513:63766-63785 Msa1423180:intron 15.0%
!!! TTTTTATTTTTTGTATTCAC+AGG + tig0025513:63919-63938 Msa1423180:intron 15.0%
!!! AAAGAAAACTTGATTTTTAT+GGG - tig0025513:64245-64264 None:intergenic 15.0%
!! TTTATATAGTTATATTAGAG+AGG + tig0025513:64396-64415 Msa1423180:three_prime_UTR 15.0%
!! TTATATAGTTATATTAGAGA+GGG + tig0025513:64397-64416 Msa1423180:three_prime_UTR 15.0%
!! GAATAAAATGATTAGAGAAA+AGG - tig0025513:61059-61078 None:intergenic 20.0%
!! TTTCTTGCTTATAAATTTCT+TGG + tig0025513:61346-61365 Msa1423180:CDS 20.0%
!! TAAAATAGAGTAACTTACTT+TGG - tig0025513:61449-61468 None:intergenic 20.0%
!! AAACAAAGATCAAATATAAG+AGG - tig0025513:61754-61773 None:intergenic 20.0%
!!! GTTTCTTAATATTTTTCATG+TGG + tig0025513:62350-62369 Msa1423180:intron 20.0%
!!! TTTTAAGAAAAAGCAGTTTT+TGG + tig0025513:62471-62490 Msa1423180:intron 20.0%
!!! TTTAAGAAAAAGCAGTTTTT+GGG + tig0025513:62472-62491 Msa1423180:intron 20.0%
!! AGATGAAAGTTTAATATGTT+CGG + tig0025513:62516-62535 Msa1423180:intron 20.0%
!! TTGGTCAAATAATAAATAGT+AGG + tig0025513:62547-62566 Msa1423180:intron 20.0%
!!! AAATGATATTTTAATCCATG+GGG - tig0025513:62712-62731 None:intergenic 20.0%
!!! CTAAATGATATTTTAATCCA+TGG - tig0025513:62714-62733 None:intergenic 20.0%
!! AGGAAAATTGTAATATCTAA+AGG + tig0025513:62747-62766 Msa1423180:intron 20.0%
!! CAATTTCTTGATAAAATCTA+AGG + tig0025513:62928-62947 Msa1423180:intron 20.0%
!!! ATCTTTTCAAAGTCTTATAT+AGG + tig0025513:63033-63052 Msa1423180:intron 20.0%
!! ATTAACCCTAAAAATTTAGA+AGG + tig0025513:63058-63077 Msa1423180:intron 20.0%
!!! TAGCATTTTATGGATAATTT+AGG + tig0025513:63253-63272 Msa1423180:intron 20.0%
!! AAGAAAAGCAGTAATATTAA+CGG - tig0025513:63610-63629 None:intergenic 20.0%
!! TATCCTGTAAAAAAAAATAG+TGG + tig0025513:63706-63725 Msa1423180:intron 20.0%
!!! TTTGCATTTTCAATTAGTTT+TGG - tig0025513:63874-63893 None:intergenic 20.0%
!! AACTAATTGAAAATGCAAAA+TGG + tig0025513:63875-63894 Msa1423180:intron 20.0%
!!! CAAAGAAAACTTGATTTTTA+TGG - tig0025513:64246-64265 None:intergenic 20.0%
!!! CATAAAAATCAAGTTTTCTT+TGG + tig0025513:64244-64263 Msa1423180:CDS 20.0%
! TAATTCATCATCATCAAGAA+CGG + tig0025513:61171-61190 Msa1423180:CDS 25.0%
!!! TCTTGATTTGTTTTTCTTTC+TGG + tig0025513:61561-61580 Msa1423180:intron 25.0%
! GAATAGATGATAGAAGATAT+TGG + tig0025513:61659-61678 Msa1423180:CDS 25.0%
!! ATTTTATGTAAACACAAAGC+AGG - tig0025513:61872-61891 None:intergenic 25.0%
!! TTTGACTAACTTTTTAATGC+AGG - tig0025513:61919-61938 None:intergenic 25.0%
! TTGATGTGTGAATAATTTGA+TGG - tig0025513:62051-62070 None:intergenic 25.0%
! AAAATTTAGTCACCCTATAT+TGG + tig0025513:62144-62163 Msa1423180:intron 25.0%
! AAATTTAGTCACCCTATATT+GGG + tig0025513:62145-62164 Msa1423180:intron 25.0%
!!! TTATACATGTTTAGTCTTGA+GGG + tig0025513:62201-62220 Msa1423180:intron 25.0%
!! CCATTAGTTTGAAAATATGT+AGG - tig0025513:62613-62632 None:intergenic 25.0%
!! CCTACATATTTTCAAACTAA+TGG + tig0025513:62610-62629 Msa1423180:intron 25.0%
!!! CATTTAGTTTCTTTTCATTG+AGG + tig0025513:62727-62746 Msa1423180:intron 25.0%
! AGAAAAATTCAAGAATGACA+TGG + tig0025513:62801-62820 Msa1423180:intron 25.0%
!!! TATTGGCTTACATTAATTTC+AGG + tig0025513:62904-62923 Msa1423180:intron 25.0%
! AGAAATATTCAAGAATGACA+TGG - tig0025513:62966-62985 None:intergenic 25.0%
!! CAGTTCCTTCTAAATTTTTA+GGG - tig0025513:63066-63085 None:intergenic 25.0%
!! ACAGTTCCTTCTAAATTTTT+AGG - tig0025513:63067-63086 None:intergenic 25.0%
! TTAAAAGCCTATTTGCAAAT+TGG + tig0025513:63210-63229 Msa1423180:intron 25.0%
!!! CAAATTGGCTTATGTTTTTA+TGG + tig0025513:63225-63244 Msa1423180:intron 25.0%
!! TATGGTCAAATAGCATTTTA+TGG + tig0025513:63243-63262 Msa1423180:intron 25.0%
!! ATGAAAATGACCTTTGTTTA+AGG + tig0025513:63329-63348 Msa1423180:intron 25.0%
!! TGAAAATGACCTTTGTTTAA+GGG + tig0025513:63330-63349 Msa1423180:intron 25.0%
!! TGAATTATACGCATTTTACT+TGG + tig0025513:63544-63563 Msa1423180:intron 25.0%
! ATCGCATATTATAATGAGAA+GGG - tig0025513:63581-63600 None:intergenic 25.0%
!!! GTTAATATTACTGCTTTTCT+TGG + tig0025513:63609-63628 Msa1423180:intron 25.0%
!!! TGACCACTATTTTTTTTTAC+AGG - tig0025513:63712-63731 None:intergenic 25.0%
! TTAGTATTAAGAAGTTTCTG+CGG + tig0025513:63802-63821 Msa1423180:intron 25.0%
! AAGACTCAAAAAATTATAGC+TGG + tig0025513:64343-64362 Msa1423180:exon 25.0%
AGATAGAATAGGTTAGAGAT+TGG - tig0025513:61013-61032 None:intergenic 30.0%
AATGATTAGAGAAAAGGGTT+AGG - tig0025513:61053-61072 None:intergenic 30.0%
AATTCATCATCATCAAGAAC+GGG + tig0025513:61172-61191 Msa1423180:CDS 30.0%
TGATATATGCAAATTGGCTA+GGG + tig0025513:61252-61271 Msa1423180:CDS 30.0%
TGAAGCTAAGTGAAAAATCA+AGG - tig0025513:61476-61495 None:intergenic 30.0%
!! TTTGTTTTTCTTTCTGGTGT+AGG + tig0025513:61567-61586 Msa1423180:intron 30.0%
! TCAAAGTCTTTGAAGATAAC+AGG + tig0025513:61637-61656 Msa1423180:CDS 30.0%
!!! TTATTTTGACCCTGTTTTGA+AGG + tig0025513:61774-61793 Msa1423180:intron 30.0%
GACACACATTGAAAATGTTT+AGG - tig0025513:61838-61857 None:intergenic 30.0%
ATGTGTGAATAATTTGATGG+TGG - tig0025513:62048-62067 None:intergenic 30.0%
! CAAATAGTTTGTGTAAGAGA+AGG + tig0025513:62073-62092 Msa1423180:intron 30.0%
ATAGTTGTTGACCCAATATA+GGG - tig0025513:62159-62178 None:intergenic 30.0%
CAAGACTAAACATGTATAAG+AGG - tig0025513:62200-62219 None:intergenic 30.0%
!! CTTATACATGTTTAGTCTTG+AGG + tig0025513:62200-62219 Msa1423180:intron 30.0%
!!! AATATGTTCGGCTCTTTTTT+TGG + tig0025513:62528-62547 Msa1423180:intron 30.0%
AATGGTTATAGAAGTGAAAG+TGG + tig0025513:62628-62647 Msa1423180:intron 30.0%
! TTAGAAGGAACTGTTGTTTA+AGG + tig0025513:63073-63092 Msa1423180:intron 30.0%
! ACATTTTCCTGAAATTACGA+TGG + tig0025513:63141-63160 Msa1423180:intron 30.0%
ACATAAGCCAATTTGCAAAT+AGG - tig0025513:63220-63239 None:intergenic 30.0%
CATTACTTTCCCTTAAACAA+AGG - tig0025513:63342-63361 None:intergenic 30.0%
CATATTCCACGAATAGAATA+TGG - tig0025513:63407-63426 None:intergenic 30.0%
CAAAGACACTTCACATAATT+GGG - tig0025513:63475-63494 None:intergenic 30.0%
TCGCATATTATAATGAGAAG+GGG - tig0025513:63580-63599 None:intergenic 30.0%
GATCGCATATTATAATGAGA+AGG - tig0025513:63582-63601 None:intergenic 30.0%
TTCTTGGAATATATCCCAAT+TGG + tig0025513:63625-63644 Msa1423180:intron 30.0%
TGTTTGTCTACAAACCAATT+GGG - tig0025513:63642-63661 None:intergenic 30.0%
ATATCTTCAACAAATGTGGT+GGG + tig0025513:63956-63975 Msa1423180:CDS 30.0%
ATAACTTTCAGACTCCAATT+GGG + tig0025513:64029-64048 Msa1423180:CDS 30.0%
! TTGATTTTTATGGGCTCATT+GGG - tig0025513:64236-64255 None:intergenic 30.0%
ATTGATTGTACTCATACCAA+AGG + tig0025513:64272-64291 Msa1423180:CDS 30.0%
!!! TCAAGTTAGCCCTTTATTTT+AGG + tig0025513:64492-64511 Msa1423180:three_prime_UTR 30.0%
TCAAACCCACCTAAAATAAA+GGG - tig0025513:64504-64523 None:intergenic 30.0%
AAAGTAAACTGCATACATAC+AGG - tig0025513:64541-64560 None:intergenic 30.0%
TAGAATAGGTTAGAGATTGG+AGG - tig0025513:61010-61029 None:intergenic 35.0%
GGTAAAAGAGGAGATAGAAT+AGG - tig0025513:61024-61043 None:intergenic 35.0%
GTTAGGTTCAAAGGTAAAAG+AGG - tig0025513:61036-61055 None:intergenic 35.0%
TCCACCTGATATATGCAAAT+TGG + tig0025513:61246-61265 Msa1423180:CDS 35.0%
CTAGCCAATTTGCATATATC+AGG - tig0025513:61253-61272 None:intergenic 35.0%
CTGATATATGCAAATTGGCT+AGG + tig0025513:61251-61270 Msa1423180:CDS 35.0%
AAGAAGCTCTATGAAAAGCA+CGG - tig0025513:61282-61301 None:intergenic 35.0%
!!! TTCTTCTGCTGATTTTGTGT+GGG + tig0025513:61297-61316 Msa1423180:CDS 35.0%
GACATCTTTCTTAGTCATAG+TGG - tig0025513:61386-61405 None:intergenic 35.0%
!! TCTGGTGTAGGAAGTTTTAT+TGG + tig0025513:61579-61598 Msa1423180:intron 35.0%
!! GTTTTATTGGACAAATGCAG+TGG + tig0025513:61592-61611 Msa1423180:CDS 35.0%
TTGGATTTACATTCCAACTG+AGG + tig0025513:61678-61697 Msa1423180:CDS 35.0%
GAAACATAGCCTTCAAAACA+GGG - tig0025513:61786-61805 None:intergenic 35.0%
AGAAACATAGCCTTCAAAAC+AGG - tig0025513:61787-61806 None:intergenic 35.0%
!!! TGTTTTGAAGGCTATGTTTC+TGG + tig0025513:61786-61805 Msa1423180:intron 35.0%
!! TTTGATGGTGGCTAAATTGA+TGG - tig0025513:62036-62055 None:intergenic 35.0%
! TAGTTTGTGTAAGAGAAGGT+TGG + tig0025513:62077-62096 Msa1423180:intron 35.0%
TCTCACATTGAAATGAGACA+AGG + tig0025513:62116-62135 Msa1423180:intron 35.0%
GATAGTTGTTGACCCAATAT+AGG - tig0025513:62160-62179 None:intergenic 35.0%
TGTGTTTATAACGGTGTATG+CGG + tig0025513:62270-62289 Msa1423180:intron 35.0%
GGGTTGTTCAGATTATTCTT+TGG - tig0025513:62692-62711 None:intergenic 35.0%
AAAGCTTCCATCGTAATTTC+AGG - tig0025513:63151-63170 None:intergenic 35.0%
CTCATAAAGAAACTGCCATA+GGG - tig0025513:63178-63197 None:intergenic 35.0%
CTATGGCAGTTTCTTTATGA+GGG + tig0025513:63177-63196 Msa1423180:intron 35.0%
TATGGCAGTTTCTTTATGAG+GGG + tig0025513:63178-63197 Msa1423180:intron 35.0%
CCAAAGACACTTCACATAAT+TGG - tig0025513:63476-63495 None:intergenic 35.0%
! CCAATTATGTGAAGTGTCTT+TGG + tig0025513:63473-63492 Msa1423180:intron 35.0%
GCATATTATAATGAGAAGGG+GGG - tig0025513:63578-63597 None:intergenic 35.0%
CGCATATTATAATGAGAAGG+GGG - tig0025513:63579-63598 None:intergenic 35.0%
AGCAGTAATATTAACGGTTG+AGG - tig0025513:63604-63623 None:intergenic 35.0%
CTGTTTGTCTACAAACCAAT+TGG - tig0025513:63643-63662 None:intergenic 35.0%
TATTCACAGGTTCAAGAATG+TGG + tig0025513:63932-63951 Msa1423180:intron 35.0%
TGGCATATCTTCAACAAATG+TGG + tig0025513:63952-63971 Msa1423180:CDS 35.0%
CATATCTTCAACAAATGTGG+TGG + tig0025513:63955-63974 Msa1423180:CDS 35.0%
CATAACTTTCAGACTCCAAT+TGG + tig0025513:64028-64047 Msa1423180:CDS 35.0%
!! GTTTTGATGACTTTCCCAAT+TGG - tig0025513:64046-64065 None:intergenic 35.0%
GGAAAGTCATCAAAACGATT+GGG + tig0025513:64050-64069 Msa1423180:CDS 35.0%
TGTAGAGAGTTGGAATCTAA+CGG - tig0025513:64123-64142 None:intergenic 35.0%
TAGATTCCAACTCTCTACAT+CGG + tig0025513:64124-64143 Msa1423180:CDS 35.0%
!! ATCTCAGAGTGTTATTTGCA+TGG + tig0025513:64161-64180 Msa1423180:CDS 35.0%
!! TCTCAGAGTGTTATTTGCAT+GGG + tig0025513:64162-64181 Msa1423180:CDS 35.0%
TTACCATGTTGGAGATTTCA+TGG + tig0025513:64202-64221 Msa1423180:CDS 35.0%
! CTTGATTTTTATGGGCTCAT+TGG - tig0025513:64237-64256 None:intergenic 35.0%
AGTCTTTCTCTAAACACAGT+TGG - tig0025513:64329-64348 None:intergenic 35.0%
!!! AGTTAGCCCTTTATTTTAGG+TGG + tig0025513:64495-64514 Msa1423180:three_prime_UTR 35.0%
!!! GTTAGCCCTTTATTTTAGGT+GGG + tig0025513:64496-64515 Msa1423180:three_prime_UTR 35.0%
CTCAAACCCACCTAAAATAA+AGG - tig0025513:64505-64524 None:intergenic 35.0%
GAGAAAAGGGTTAGGTTCAA+AGG - tig0025513:61045-61064 None:intergenic 40.0%
TGGATCAAGATGCATGAGTA+TGG - tig0025513:61230-61249 None:intergenic 40.0%
GCCAATTTGCATATATCAGG+TGG - tig0025513:61250-61269 None:intergenic 40.0%
!!! CTTCTTCTGCTGATTTTGTG+TGG + tig0025513:61296-61315 Msa1423180:CDS 40.0%
GCAAGAAACTTGTAGCATGA+TGG - tig0025513:61334-61353 None:intergenic 40.0%
TGTCAACCTAATCGCTTTGA+CGG + tig0025513:61418-61437 Msa1423180:CDS 40.0%
TGTTTAGGAGTCAAGACACA+TGG - tig0025513:61823-61842 None:intergenic 40.0%
! TATTTTTCATGTGGCAGCTG+AGG + tig0025513:62359-62378 Msa1423180:intron 40.0%
GAATAATCTGAACAACCCCA+TGG + tig0025513:62694-62713 Msa1423180:intron 40.0%
CAATAAAATCTCAGCCTGAC+CGG - tig0025513:62889-62908 None:intergenic 40.0%
CCTCATAAAGAAACTGCCAT+AGG - tig0025513:63179-63198 None:intergenic 40.0%
CCTATGGCAGTTTCTTTATG+AGG + tig0025513:63176-63195 Msa1423180:intron 40.0%
ATGGCAGTTTCTTTATGAGG+GGG + tig0025513:63179-63198 Msa1423180:intron 40.0%
GCAATGCCATATTCTATTCG+TGG + tig0025513:63398-63417 Msa1423180:intron 40.0%
! TGGGCAAATAGAAGCTTTTG+TGG - tig0025513:63456-63475 None:intergenic 40.0%
!! ATGTGGTGGGTTGAAGTAAT+AGG + tig0025513:63969-63988 Msa1423180:CDS 40.0%
CTAGAGTTTGTATTCCCTGT+GGG + tig0025513:63996-64015 Msa1423180:CDS 40.0%
TTATGCTGTAACTTCCCACA+GGG - tig0025513:64013-64032 None:intergenic 40.0%
GGGAAAGTCATCAAAACGAT+TGG + tig0025513:64049-64068 Msa1423180:CDS 40.0%
TGCAACGATGATCAAGTTCA+TGG + tig0025513:64083-64102 Msa1423180:CDS 40.0%
GTAGAGAGTTGGAATCTAAC+GGG - tig0025513:64122-64141 None:intergenic 40.0%
! CAATGGGCTTATTACCATGT+TGG + tig0025513:64191-64210 Msa1423180:CDS 40.0%
CAACCATGAAATCTCCAACA+TGG - tig0025513:64208-64227 None:intergenic 40.0%
GATTGTACTCATACCAAAGG+CGG + tig0025513:64275-64294 Msa1423180:CDS 40.0%
TGATTGCACTATCTATGCAG+AGG - tig0025513:64301-64320 None:intergenic 40.0%
ACATTCCAACTGAGGAATCC+AGG + tig0025513:61686-61705 Msa1423180:CDS 45.0%
TCTATAGTGCATCTCTCACC+TGG - tig0025513:61707-61726 None:intergenic 45.0%
GTTTATAACGGTGTATGCGG+TGG + tig0025513:62273-62292 Msa1423180:intron 45.0%
GTGTATGCGGTGGACAATAA+GGG + tig0025513:62283-62302 Msa1423180:intron 45.0%
ATGTGGCAGCTGAGGTAAAA+GGG + tig0025513:62367-62386 Msa1423180:intron 45.0%
!! GGTGGTGGACTGAAATCTAA+GGG - tig0025513:62838-62857 None:intergenic 45.0%
! CGGTCAGGCTGAGATTTTAT+TGG + tig0025513:62887-62906 Msa1423180:intron 45.0%
ATGGAAGCTTTCTCACCCTA+TGG + tig0025513:63160-63179 Msa1423180:intron 45.0%
GCTAGAGTTTGTATTCCCTG+TGG + tig0025513:63995-64014 Msa1423180:CDS 45.0%
GTTATGCTGTAACTTCCCAC+AGG - tig0025513:64014-64033 None:intergenic 45.0%
ACGATGATCAAGTTCATGGC+TGG + tig0025513:64087-64106 Msa1423180:CDS 45.0%
CGATGATCAAGTTCATGGCT+GGG + tig0025513:64088-64107 Msa1423180:CDS 45.0%
TTCCAACTCTCTACATCGGA+CGG + tig0025513:64128-64147 Msa1423180:CDS 45.0%
!! AGTGTTATTTGCATGGGCCA+GGG + tig0025513:64168-64187 Msa1423180:CDS 45.0%
!! TATATTATATTAATAAACTT+AGG + tig0025513:63506-63525 Msa1423180:intron 5.0%
CAACCTAATCGCTTTGACGG+TGG + tig0025513:61421-61440 Msa1423180:CDS 50.0%
GTACCACCGTCAAAGCGATT+AGG - tig0025513:61427-61446 None:intergenic 50.0%
TCTCACCTGGATTCCTCAGT+TGG - tig0025513:61694-61713 None:intergenic 50.0%
GGTGTATGCGGTGGACAATA+AGG + tig0025513:62282-62301 Msa1423180:intron 50.0%
CATGTGGCAGCTGAGGTAAA+AGG + tig0025513:62366-62385 Msa1423180:intron 50.0%
TGTGGCAGCTGAGGTAAAAG+GGG + tig0025513:62368-62387 Msa1423180:intron 50.0%
!! GGGTGGTGGACTGAAATCTA+AGG - tig0025513:62839-62858 None:intergenic 50.0%
TCAGCCTGACCGGAAATCAT+GGG - tig0025513:62879-62898 None:intergenic 50.0%
!! GAGTGTTATTTGCATGGGCC+AGG + tig0025513:64167-64186 Msa1423180:CDS 50.0%
TGGTAATAAGCCCATTGCCC+TGG - tig0025513:64188-64207 None:intergenic 50.0%
GTGGCAGCTGAGGTAAAAGG+GGG + tig0025513:62369-62388 Msa1423180:intron 55.0%
TGGGGTGGTGCGGAAATCAT+GGG - tig0025513:62860-62879 None:intergenic 55.0%
ATGGGGTGGTGCGGAAATCA+TGG - tig0025513:62861-62880 None:intergenic 55.0%
CAGCCTGACCGGAAATCATG+GGG - tig0025513:62878-62897 None:intergenic 55.0%
CTCAGCCTGACCGGAAATCA+TGG - tig0025513:62880-62899 None:intergenic 55.0%
GACCGTCCGATGTAGAGAGT+TGG - tig0025513:64133-64152 None:intergenic 55.0%
ATTTGCATGGGCCAGGGCAA+TGG + tig0025513:64174-64193 Msa1423180:CDS 55.0%
TTTGCATGGGCCAGGGCAAT+GGG + tig0025513:64175-64194 Msa1423180:CDS 55.0%
ATCTATGCAGAGGCCGCCTT+TGG - tig0025513:64291-64310 None:intergenic 55.0%
GTGCGGAAATCATGGGGTGG+TGG - tig0025513:62853-62872 None:intergenic 60.0%
GTGGTGCGGAAATCATGGGG+TGG - tig0025513:62856-62875 None:intergenic 60.0%
GGGGTGGTGCGGAAATCATG+GGG - tig0025513:62859-62878 None:intergenic 60.0%
CCGGAAATCATGGGGTGGTG+CGG - tig0025513:62870-62889 None:intergenic 60.0%
CCGCACCACCCCATGATTTC+CGG + tig0025513:62867-62886 Msa1423180:intron 60.0%
CCTGACCGGAAATCATGGGG+TGG - tig0025513:62875-62894 None:intergenic 60.0%
CCACCCCATGATTTCCGGTC+AGG + tig0025513:62872-62891 Msa1423180:intron 60.0%
Chromosome Type Strat End Strand Name
tig0025513 gene 60970 64588 60970 ID=Msa1423180;Name=Msa1423180
tig0025513 mRNA 60970 64588 60970 ID=Msa1423180-mRNA-1;Parent=Msa1423180;Name=Msa1423180-mRNA-1;_AED=0.08;_eAED=0.08;_QI=145|1|1|1|1|1|3|227|291
tig0025513 exon 60970 61450 60970 ID=Msa1423180-mRNA-1:exon:3056;Parent=Msa1423180-mRNA-1
tig0025513 exon 61589 61707 61589 ID=Msa1423180-mRNA-1:exon:3057;Parent=Msa1423180-mRNA-1
tig0025513 exon 63941 64588 63941 ID=Msa1423180-mRNA-1:exon:3058;Parent=Msa1423180-mRNA-1
tig0025513 five_prime_UTR 60970 61114 60970 ID=Msa1423180-mRNA-1:five_prime_utr;Parent=Msa1423180-mRNA-1
tig0025513 CDS 61115 61450 61115 ID=Msa1423180-mRNA-1:cds;Parent=Msa1423180-mRNA-1
tig0025513 CDS 61589 61707 61589 ID=Msa1423180-mRNA-1:cds;Parent=Msa1423180-mRNA-1
tig0025513 CDS 63941 64361 63941 ID=Msa1423180-mRNA-1:cds;Parent=Msa1423180-mRNA-1
tig0025513 three_prime_UTR 64362 64588 64362 ID=Msa1423180-mRNA-1:three_prime_utr;Parent=Msa1423180-mRNA-1
Gene Sequence

>Msa1423180

ATGGGGTCTAGTATTTCTTCAACTGCATCTATAAGAGAAAACAATAACGAAGACTCTAATTCATCATCATCAAGAACGGGTCTTTGTGATATTGCAGAGAGTTGCATCTCTTCCATACTCATGCATCTTGATCCACCTGATATATGCAAATTGGCTAGGGTCAACCGTGCTTTTCATAGAGCTTCTTCTGCTGATTTTGTGTGGGAATCAAAGTTACCATCATGCTACAAGTTTCTTGCTTATAAATTTCTTGGTGAAGAAAATCTTTCCACTATGACTAAGAAAGATGTCTACACAAAACTATGTCAACCTAATCGCTTTGACGGTGGTACCAAAGAAGTTTTATTGGACAAATGCAGTGGACAAGTTTGTTTGTTCATGTCATCAAAGTCTTTGAAGATAACAGGAATAGATGATAGAAGATATTGGATTTACATTCCAACTGAGGAATCCAGGTTCAAGAATGTGGCATATCTTCAACAAATGTGGTGGGTTGAAGTAATAGGAGAGCTAGAGTTTGTATTCCCTGTGGGAAGTTACAGCATAACTTTCAGACTCCAATTGGGAAAGTCATCAAAACGATTGGGCAGACGTGTGTGCAACGATGATCAAGTTCATGGCTGGGACATCAAGCCCGTTAGATTCCAACTCTCTACATCGGACGGTCAGCGTTCAATCTCAGAGTGTTATTTGCATGGGCCAGGGCAATGGGCTTATTACCATGTTGGAGATTTCATGGTTGTAAAGCCCAATGAGCCCATAAAAATCAAGTTTTCTTTGGCTCAAATTGATTGTACTCATACCAAAGGCGGCCTCTGCATAGATAGTGCAATCATTTCTCCAACTGTGTTTAGAGAAAGACTCAAAAAATTATAG

Protein sequence

>Msa1423180

MGSSISSTASIRENNNEDSNSSSSRTGLCDIAESCISSILMHLDPPDICKLARVNRAFHRASSADFVWESKLPSCYKFLAYKFLGEENLSTMTKKDVYTKLCQPNRFDGGTKEVLLDKCSGQVCLFMSSKSLKITGIDDRRYWIYIPTEESRFKNVAYLQQMWWVEVIGELEFVFPVGSYSITFRLQLGKSSKRLGRRVCNDDQVHGWDIKPVRFQLSTSDGQRSISECYLHGPGQWAYYHVGDFMVVKPNEPIKIKFSLAQIDCTHTKGGLCIDSAIISPTVFRERLKKL*