AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1422510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422510 MtrunA17_Chr1g0203751 94.845 291 15 0 1 291 1 291 0.0 547
Msa1422510 MtrunA17_Chr6g0472801 72.792 283 77 0 9 291 3 285 2.16e-157 440
Msa1422510 MtrunA17_Chr8g0350401 58.803 284 106 3 1 279 1 278 1.92e-122 352
Msa1422510 MtrunA17_Chr4g0057281 61.154 260 100 1 28 286 19 278 1.82e-118 341
Msa1422510 MtrunA17_Chr5g0397981 54.225 284 125 3 4 286 14 293 1.04e-110 322
Msa1422510 MtrunA17_Chr7g0265551 52.013 298 123 2 1 287 73 361 9.35e-109 320
Msa1422510 MtrunA17_Chr7g0272101 22.711 273 179 6 31 286 4 261 6.39e-25 100
Msa1422510 MtrunA17_Chr7g0272091 25.000 284 185 6 23 281 2 282 8.69e-24 97.8
Msa1422510 MtrunA17_Chr1g0189671 28.755 233 150 4 26 257 2 219 1.39e-23 97.1
Msa1422510 MtrunA17_Chr1g0203281 28.421 285 164 8 26 283 2 273 2.18e-23 96.7
Msa1422510 MtrunA17_Chr1g0189591 37.762 143 86 2 30 169 15 157 1.30e-22 95.1
Msa1422510 MtrunA17_Chr4g0010881 23.735 257 174 6 31 285 4 240 1.70e-22 93.6
Msa1422510 MtrunA17_Chr1g0189821 36.620 142 88 2 30 169 6 147 4.14e-22 93.2
Msa1422510 MtrunA17_Chr1g0189611 34.932 146 93 2 26 169 2 147 2.84e-21 90.9
Msa1422510 MtrunA17_Chr1g0192371 34.266 143 92 2 31 171 11 153 4.84e-20 87.8
Msa1422510 MtrunA17_Chr1g0203331 37.984 129 77 2 45 172 6 132 3.75e-19 84.3
Msa1422510 MtrunA17_Chr1g0189751 34.667 150 95 2 26 174 2 149 2.76e-18 83.2
Msa1422510 MtrunA17_Chr1g0189721 32.530 166 105 4 26 186 2 165 3.47e-18 82.4
Msa1422510 MtrunA17_Chr3g0097191 28.674 279 152 9 28 281 10 266 3.96e-18 82.0
Msa1422510 MtrunA17_Chr1g0189641 27.426 237 151 5 26 255 2 224 3.31e-17 79.7
Msa1422510 MtrunA17_Chr1g0189621 32.877 146 94 3 30 174 6 148 6.33e-17 78.6
Msa1422510 MtrunA17_Chr1g0189781 32.639 144 94 2 31 171 11 154 5.03e-15 73.6
Msa1422510 MtrunA17_Chr3g0095261 27.018 285 165 10 28 281 10 282 2.44e-14 71.6
Msa1422510 MtrunA17_Chr1g0190071 31.034 145 97 2 30 171 6 150 4.15e-14 71.2
Msa1422510 MtrunA17_Chr1g0189771 28.662 157 109 2 18 171 2 158 3.04e-13 66.6
Msa1422510 MtrunA17_Chr1g0189661 31.944 144 96 2 30 171 6 149 4.99e-13 68.2
Msa1422510 MtrunA17_Chr3g0078331 30.000 160 92 5 26 169 15 170 3.58e-11 62.8
Msa1422510 MtrunA17_Chr1g0189711 32.886 149 86 6 30 169 6 149 4.46e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422510 AT3G61060.1 59.574 282 110 3 1 281 1 279 1.92e-126 362
Msa1422510 AT3G61060.2 59.364 283 110 4 1 281 1 280 1.18e-124 357
Msa1422510 AT5G52120.1 55.019 269 115 1 27 289 20 288 1.82e-110 322
Msa1422510 AT1G12710.1 56.296 270 112 3 25 291 25 291 1.21e-104 306
Msa1422510 AT1G63090.1 54.104 268 121 2 25 291 23 289 1.63e-100 296
Msa1422510 AT3G53000.1 48.973 292 130 3 1 281 1 284 2.52e-97 288
Msa1422510 AT1G12710.2 48.718 312 112 4 25 291 25 333 1.30e-95 285
Msa1422510 AT1G09155.1 27.586 203 131 3 31 231 3 191 2.58e-21 91.7
Msa1422510 AT2G02360.1 37.681 138 80 2 33 169 19 151 2.74e-21 91.3
Msa1422510 AT2G02240.1 28.777 278 148 8 31 282 64 317 3.12e-19 86.3
Msa1422510 AT2G02230.1 32.278 158 99 3 15 171 21 171 5.00e-19 86.3
Msa1422510 AT5G24560.1 27.160 162 106 3 30 184 5 161 4.17e-18 80.9
Msa1422510 AT1G80110.1 25.746 268 174 7 28 282 1 256 2.72e-17 80.1
Msa1422510 AT2G02340.1 30.994 171 102 4 19 181 27 189 3.79e-17 80.5
Msa1422510 AT2G02310.1 35.878 131 78 2 30 159 47 172 1.50e-16 78.6
Msa1422510 AT2G02350.2 30.769 156 101 3 13 166 9 159 1.71e-16 78.6
Msa1422510 AT2G02250.1 29.714 175 113 4 2 171 18 187 4.74e-16 77.4
Msa1422510 AT1G56250.1 24.468 282 177 8 31 281 4 280 5.67e-15 73.9
Msa1422510 AT1G56240.1 22.603 292 170 6 31 281 4 280 6.01e-14 70.9
Msa1422510 AT2G02300.1 29.801 151 101 2 22 171 28 174 3.41e-11 63.2

Find 71 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTGCTTATAAATTTCT+TGG 0.233636 tig0025415:-32318 Msa1422510:CDS
CTCAAACCCACCTAAAATAA+AGG 0.284259 tig0025415:+29161 None:intergenic
TCCACCTGATATATGCAAAT+TGG 0.341137 tig0025415:-32418 Msa1422510:CDS
CATAACTTTCAGACTCCAAT+TGG 0.346494 tig0025415:-29635 Msa1422510:CDS
TTACCATGTTGGAGATTTCA+TGG 0.347440 tig0025415:-29461 Msa1422510:CDS
AGATAGAATAGGTTAGAGAT+TGG 0.354650 tig0025415:+32654 None:intergenic
ATGTGGTGGGTTGAAGTAAT+AGG 0.354758 tig0025415:-29694 Msa1422510:CDS
TCAAAGTCTTTGAAGATAAC+AGG 0.357934 tig0025415:-32027 Msa1422510:CDS
ATTTGCATGGGCCAGGGCAA+TGG 0.362661 tig0025415:-29489 Msa1422510:CDS
AATAAAATGATTAGAGAAAA+GGG 0.385177 tig0025415:+32609 None:intergenic
TGGATCAAGATGCATGAGTA+TGG 0.388988 tig0025415:+32437 None:intergenic
CTAGCCAATTTGCATATATC+AGG 0.392374 tig0025415:+32414 None:intergenic
GAATAAAATGATTAGAGAAA+AGG 0.394648 tig0025415:+32608 None:intergenic
TTTGCATGGGCCAGGGCAAT+GGG 0.397867 tig0025415:-29488 Msa1422510:CDS
GAGTGTTATTTGCATGGGCC+AGG 0.404946 tig0025415:-29496 Msa1422510:CDS
GTACCACCGTCAAAGCGATT+AGG 0.408204 tig0025415:+32240 None:intergenic
ATCTATGCAGAGGCCGCCTT+TGG 0.412675 tig0025415:+29375 None:intergenic
GAATAGATGATAGAAGATAT+TGG 0.414837 tig0025415:-32005 Msa1422510:CDS
GACATCTTTCTTAGTCATAG+TGG 0.416582 tig0025415:+32281 None:intergenic
GAGAAAAGGGTTAGGTTCAA+AGG 0.433803 tig0025415:+32622 None:intergenic
GGTAAAAGAGGAGATAGAAT+AGG 0.437367 tig0025415:+32643 None:intergenic
ATCTCAGAGTGTTATTTGCA+TGG 0.460843 tig0025415:-29502 Msa1422510:CDS
GTTAGGTTCAAAGGTAAAAG+AGG 0.466771 tig0025415:+32631 None:intergenic
TCAAACCCACCTAAAATAAA+GGG 0.468506 tig0025415:+29162 None:intergenic
TAGAATAGGTTAGAGATTGG+AGG 0.474821 tig0025415:+32657 None:intergenic
AATTCATCATCATCAAGAAC+GGG 0.479897 tig0025415:-32492 Msa1422510:CDS
AGTCTTTCTCTAAACACAGT+TGG 0.483039 tig0025415:+29337 None:intergenic
ACGATGATCAAGTTCATGGC+TGG 0.486450 tig0025415:-29576 Msa1422510:CDS
AATGATTAGAGAAAAGGGTT+AGG 0.488957 tig0025415:+32614 None:intergenic
GGGAAAGTCATCAAAACGAT+TGG 0.489012 tig0025415:-29614 Msa1422510:CDS
CTGATATATGCAAATTGGCT+AGG 0.492079 tig0025415:-32413 Msa1422510:CDS
TCTCACCTGGATTCCTCAGT+TGG 0.494511 tig0025415:+31973 None:intergenic
ACATTCCAACTGAGGAATCC+AGG 0.495554 tig0025415:-31978 Msa1422510:intron
GTAGAGAGTTGGAATCTAAC+GGG 0.506240 tig0025415:+29544 None:intergenic
TTTATATAGTTATATTAGAG+AGG 0.510678 tig0025415:-29267 Msa1422510:three_prime_UTR
TGGTAATAAGCCCATTGCCC+TGG 0.511634 tig0025415:+29478 None:intergenic
TGCAACGATGATCAAGTTCA+TGG 0.517273 tig0025415:-29580 Msa1422510:CDS
AAAGTAAACTGCATACATAC+AGG 0.519497 tig0025415:+29125 None:intergenic
ATAACTTTCAGACTCCAATT+GGG 0.520543 tig0025415:-29634 Msa1422510:CDS
GGAAAGTCATCAAAACGATT+GGG 0.522230 tig0025415:-29613 Msa1422510:CDS
TATTCACAGGTTCAAGAATG+TGG 0.529110 tig0025415:-29731 Msa1422510:intron
CAATGGGCTTATTACCATGT+TGG 0.535550 tig0025415:-29472 Msa1422510:CDS
TAATTCATCATCATCAAGAA+CGG 0.545437 tig0025415:-32493 Msa1422510:CDS
CGATGATCAAGTTCATGGCT+GGG 0.545852 tig0025415:-29575 Msa1422510:CDS
TGTCAACCTAATCGCTTTGA+CGG 0.551447 tig0025415:-32246 Msa1422510:CDS
GCAAGAAACTTGTAGCATGA+TGG 0.553327 tig0025415:+32333 None:intergenic
TCTCAGAGTGTTATTTGCAT+GGG 0.559048 tig0025415:-29501 Msa1422510:CDS
GCCAATTTGCATATATCAGG+TGG 0.562917 tig0025415:+32417 None:intergenic
GACCGTCCGATGTAGAGAGT+TGG 0.563295 tig0025415:+29533 None:intergenic
ATATATACAGTTGTTATACA+AGG 0.566583 tig0025415:-29094 None:intergenic
TGTAGAGAGTTGGAATCTAA+CGG 0.566747 tig0025415:+29543 None:intergenic
CATATCTTCAACAAATGTGG+TGG 0.568286 tig0025415:-29708 Msa1422510:CDS
TTTCAATTAATTCATTTATG+GGG 0.568667 tig0025415:-32566 Msa1422510:exon
CTAGAGTTTGTATTCCCTGT+GGG 0.569667 tig0025415:-29667 Msa1422510:CDS
TTATATAGTTATATTAGAGA+GGG 0.570374 tig0025415:-29266 Msa1422510:three_prime_UTR
TGATATATGCAAATTGGCTA+GGG 0.577318 tig0025415:-32412 Msa1422510:CDS
AGTGTTATTTGCATGGGCCA+GGG 0.596672 tig0025415:-29495 Msa1422510:CDS
GTTATGCTGTAACTTCCCAC+AGG 0.602467 tig0025415:+29652 None:intergenic
ATTGATTGTACTCATACCAA+AGG 0.615939 tig0025415:-29391 Msa1422510:CDS
TTCCAACTCTCTACATCGGA+CGG 0.616192 tig0025415:-29535 Msa1422510:CDS
CAACCTAATCGCTTTGACGG+TGG 0.616958 tig0025415:-32243 Msa1422510:CDS
TTGGATTTACATTCCAACTG+AGG 0.622680 tig0025415:-31986 Msa1422510:CDS
CAACCATGAAATCTCCAACA+TGG 0.639418 tig0025415:+29458 None:intergenic
AAGAAGCTCTATGAAAAGCA+CGG 0.646856 tig0025415:+32385 None:intergenic
GCTAGAGTTTGTATTCCCTG+TGG 0.659976 tig0025415:-29668 Msa1422510:CDS
GATTGTACTCATACCAAAGG+CGG 0.661351 tig0025415:-29388 Msa1422510:CDS
TGGCATATCTTCAACAAATG+TGG 0.668014 tig0025415:-29711 Msa1422510:CDS
TGATTGCACTATCTATGCAG+AGG 0.671933 tig0025415:+29365 None:intergenic
TAGATTCCAACTCTCTACAT+CGG 0.677625 tig0025415:-29539 Msa1422510:CDS
ATATCTTCAACAAATGTGGT+GGG 0.687256 tig0025415:-29707 Msa1422510:CDS
TTATGCTGTAACTTCCCACA+GGG 0.694696 tig0025415:+29653 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCAATTAATTCATTTA+TGG - tig0025415:29223-29242 Msa1422510:three_prime_UTR 10.0%
!!! TTTTCAATTAATTCATTTAT+GGG - tig0025415:29224-29243 Msa1422510:three_prime_UTR 10.0%
!! TTAACAAATATCTATTAAAA+TGG - tig0025415:31490-31509 Msa1422510:intron 10.0%
!! AATAAAATGATTAGAGAAAA+GGG + tig0025415:29185-29204 None:intergenic 15.0%
!! TTTCAATTAATTCATTTATG+GGG - tig0025415:29225-29244 Msa1422510:three_prime_UTR 15.0%
!! TGAAGAAAAAAAAAATCAAA+AGG + tig0025415:29652-29671 None:intergenic 15.0%
!! ACTATAGAAATGTATAAATA+TGG - tig0025415:29846-29865 Msa1422510:intron 15.0%
!!! ATACTTTTTAAGAATGAATT+AGG - tig0025415:30104-30123 Msa1422510:intron 15.0%
!! ATATGAAAATGTGTTTATAA+CGG - tig0025415:30388-30407 Msa1422510:intron 15.0%
!! TTAAATTTCTACACTAAATT+TGG + tig0025415:30442-30461 None:intergenic 15.0%
!!! TATAGAATAAAGTTTTCATT+AGG + tig0025415:30567-30586 None:intergenic 15.0%
!!! TTGATTTTAATTGATTTGTA+CGG + tig0025415:30786-30805 None:intergenic 15.0%
!! TACAAATCAATTAAAATCAA+TGG - tig0025415:30786-30805 Msa1422510:intron 15.0%
!!! TAAATGATATTTTAATCCAT+GGG + tig0025415:30840-30859 None:intergenic 15.0%
!! AATTTCTTGATAAAATCTAA+GGG - tig0025415:31057-31076 Msa1422510:intron 15.0%
!! TCTTATCAAAAATAAACATT+AGG - tig0025415:31894-31913 Msa1422510:intron 15.0%
!!! TTTTTATTTTTTGTATTCAC+AGG - tig0025415:32047-32066 Msa1422510:CDS 15.0%
!!! AAAGAAAACTTGATTTTTAT+GGG + tig0025415:32373-32392 None:intergenic 15.0%
!! TTTATATAGTTATATTAGAG+AGG - tig0025415:32524-32543 Msa1422510:CDS 15.0%
!! TTATATAGTTATATTAGAGA+GGG - tig0025415:32525-32544 Msa1422510:CDS 15.0%
!! GAATAAAATGATTAGAGAAA+AGG + tig0025415:29186-29205 None:intergenic 20.0%
!! TTTCTTGCTTATAAATTTCT+TGG - tig0025415:29473-29492 Msa1422510:CDS 20.0%
!! TAAAATAGAGTAACTTACTT+TGG + tig0025415:29576-29595 None:intergenic 20.0%
!! AAACAAAGATCAAATATAAG+AGG + tig0025415:29881-29900 None:intergenic 20.0%
!!! GTTTCTTAATATTTTTCATG+TGG - tig0025415:30477-30496 Msa1422510:intron 20.0%
!!! TTTTAAGAAAAAGCAGTTTT+TGG - tig0025415:30598-30617 Msa1422510:intron 20.0%
!!! TTTAAGAAAAAGCAGTTTTT+GGG - tig0025415:30599-30618 Msa1422510:intron 20.0%
!! AGATGAAAGTTTAATATGTT+CGG - tig0025415:30643-30662 Msa1422510:intron 20.0%
!! TTGGTCAAATAATAAATAGT+AGG - tig0025415:30674-30693 Msa1422510:intron 20.0%
!!! AAATGATATTTTAATCCATG+GGG + tig0025415:30839-30858 None:intergenic 20.0%
!!! CTAAATGATATTTTAATCCA+TGG + tig0025415:30841-30860 None:intergenic 20.0%
!! AGGAAAATTGTAATATCTAA+AGG - tig0025415:30874-30893 Msa1422510:intron 20.0%
!! CAATTTCTTGATAAAATCTA+AGG - tig0025415:31056-31075 Msa1422510:intron 20.0%
!!! ATCTTTTCAAAGTCTTATAT+AGG - tig0025415:31161-31180 Msa1422510:intron 20.0%
!! ATTAACCCTAAAAATTTAGA+AGG - tig0025415:31186-31205 Msa1422510:intron 20.0%
!!! TAGCATTTTATGGATAATTT+AGG - tig0025415:31381-31400 Msa1422510:intron 20.0%
!! AAGAAAAGCAGTAATATTAA+CGG + tig0025415:31738-31757 None:intergenic 20.0%
!! TATCCTGTAAAAAAAAATAG+TGG - tig0025415:31834-31853 Msa1422510:intron 20.0%
!!! TTTGCATTTTCAATTAGTTT+TGG + tig0025415:32002-32021 None:intergenic 20.0%
!! AACTAATTGAAAATGCAAAA+TGG - tig0025415:32003-32022 Msa1422510:CDS 20.0%
!!! CAAAGAAAACTTGATTTTTA+TGG + tig0025415:32374-32393 None:intergenic 20.0%
!!! CATAAAAATCAAGTTTTCTT+TGG - tig0025415:32372-32391 Msa1422510:CDS 20.0%
! TAATTCATCATCATCAAGAA+CGG - tig0025415:29298-29317 Msa1422510:three_prime_UTR 25.0%
!!! TCTTGATTTGTTTTTCTTTC+TGG - tig0025415:29688-29707 Msa1422510:CDS 25.0%
! GAATAGATGATAGAAGATAT+TGG - tig0025415:29786-29805 Msa1422510:intron 25.0%
!! ATTTTATGTAAACACAAAGC+AGG + tig0025415:29999-30018 None:intergenic 25.0%
!! TTTGACTAACTTTTTAATGC+AGG + tig0025415:30046-30065 None:intergenic 25.0%
! TTGATGTGTGAATAATTTGA+TGG + tig0025415:30178-30197 None:intergenic 25.0%
! AAAATTTAGTCACCCTATAT+TGG - tig0025415:30271-30290 Msa1422510:intron 25.0%
! AAATTTAGTCACCCTATATT+GGG - tig0025415:30272-30291 Msa1422510:intron 25.0%
!!! TTATACATGTTTAGTCTTGA+GGG - tig0025415:30328-30347 Msa1422510:intron 25.0%
!! CCATTAGTTTGAAAATATGT+AGG + tig0025415:30740-30759 None:intergenic 25.0%
!! CCTACATATTTTCAAACTAA+TGG - tig0025415:30737-30756 Msa1422510:intron 25.0%
!!! CATTTAGTTTCTTTTCATTG+AGG - tig0025415:30854-30873 Msa1422510:intron 25.0%
! AGAAAAATTCAAGAATGACA+TGG - tig0025415:30928-30947 Msa1422510:intron 25.0%
!!! TATTGGCTTACATTAATTTC+AGG - tig0025415:31032-31051 Msa1422510:intron 25.0%
! AGAAATATTCAAGAATGACA+TGG + tig0025415:31094-31113 None:intergenic 25.0%
!! CAGTTCCTTCTAAATTTTTA+GGG + tig0025415:31194-31213 None:intergenic 25.0%
!! ACAGTTCCTTCTAAATTTTT+AGG + tig0025415:31195-31214 None:intergenic 25.0%
! TTAAAAGCCTATTTGCAAAT+TGG - tig0025415:31338-31357 Msa1422510:intron 25.0%
!!! CAAATTGGCTTATGTTTTTA+TGG - tig0025415:31353-31372 Msa1422510:intron 25.0%
!! TATGGTCAAATAGCATTTTA+TGG - tig0025415:31371-31390 Msa1422510:intron 25.0%
!! ATGAAAATGACCTTTGTTTA+AGG - tig0025415:31457-31476 Msa1422510:intron 25.0%
!! TGAAAATGACCTTTGTTTAA+GGG - tig0025415:31458-31477 Msa1422510:intron 25.0%
!! TGAATTATACGCATTTTACT+TGG - tig0025415:31672-31691 Msa1422510:intron 25.0%
! ATCGCATATTATAATGAGAA+GGG + tig0025415:31709-31728 None:intergenic 25.0%
!!! GTTAATATTACTGCTTTTCT+TGG - tig0025415:31737-31756 Msa1422510:intron 25.0%
!!! TGACCACTATTTTTTTTTAC+AGG + tig0025415:31840-31859 None:intergenic 25.0%
! TTAGTATTAAGAAGTTTCTG+CGG - tig0025415:31930-31949 Msa1422510:intron 25.0%
! AAGACTCAAAAAATTATAGC+TGG - tig0025415:32471-32490 Msa1422510:CDS 25.0%
AGATAGAATAGGTTAGAGAT+TGG + tig0025415:29140-29159 None:intergenic 30.0%
AATGATTAGAGAAAAGGGTT+AGG + tig0025415:29180-29199 None:intergenic 30.0%
AATTCATCATCATCAAGAAC+GGG - tig0025415:29299-29318 Msa1422510:three_prime_UTR 30.0%
TGATATATGCAAATTGGCTA+GGG - tig0025415:29379-29398 Msa1422510:CDS 30.0%
TGAAGCTAAGTGAAAAATCA+AGG + tig0025415:29603-29622 None:intergenic 30.0%
!! TTTGTTTTTCTTTCTGGTGT+AGG - tig0025415:29694-29713 Msa1422510:CDS 30.0%
! TCAAAGTCTTTGAAGATAAC+AGG - tig0025415:29764-29783 Msa1422510:intron 30.0%
!!! TTATTTTGACCCTGTTTTGA+AGG - tig0025415:29901-29920 Msa1422510:intron 30.0%
GACACACATTGAAAATGTTT+AGG + tig0025415:29965-29984 None:intergenic 30.0%
ATGTGTGAATAATTTGATGG+TGG + tig0025415:30175-30194 None:intergenic 30.0%
! CAAATAGTTTGTGTAAGAGA+AGG - tig0025415:30200-30219 Msa1422510:intron 30.0%
ATAGTTGTTGACCCAATATA+GGG + tig0025415:30286-30305 None:intergenic 30.0%
CAAGACTAAACATGTATAAG+AGG + tig0025415:30327-30346 None:intergenic 30.0%
!! CTTATACATGTTTAGTCTTG+AGG - tig0025415:30327-30346 Msa1422510:intron 30.0%
!!! AATATGTTCGGCTCTTTTTT+TGG - tig0025415:30655-30674 Msa1422510:intron 30.0%
AATGGTTATAGAAGTGAAAG+TGG - tig0025415:30755-30774 Msa1422510:intron 30.0%
! TTAGAAGGAACTGTTGTTTA+AGG - tig0025415:31201-31220 Msa1422510:intron 30.0%
! ACATTTTCCTGAAATTACGA+TGG - tig0025415:31269-31288 Msa1422510:intron 30.0%
ACATAAGCCAATTTGCAAAT+AGG + tig0025415:31348-31367 None:intergenic 30.0%
CATTACTTTCCCTTAAACAA+AGG + tig0025415:31470-31489 None:intergenic 30.0%
CATATTCCACGAATAGAATA+TGG + tig0025415:31535-31554 None:intergenic 30.0%
CAAAGACACTTCACATAATT+GGG + tig0025415:31603-31622 None:intergenic 30.0%
TCGCATATTATAATGAGAAG+GGG + tig0025415:31708-31727 None:intergenic 30.0%
GATCGCATATTATAATGAGA+AGG + tig0025415:31710-31729 None:intergenic 30.0%
TTCTTGGAATATATCCCAAT+TGG - tig0025415:31753-31772 Msa1422510:intron 30.0%
TGTTTGTCTACAAACCAATT+GGG + tig0025415:31770-31789 None:intergenic 30.0%
ATATCTTCAACAAATGTGGT+GGG - tig0025415:32084-32103 Msa1422510:intron 30.0%
ATAACTTTCAGACTCCAATT+GGG - tig0025415:32157-32176 Msa1422510:intron 30.0%
! TTGATTTTTATGGGCTCATT+GGG + tig0025415:32364-32383 None:intergenic 30.0%
ATTGATTGTACTCATACCAA+AGG - tig0025415:32400-32419 Msa1422510:CDS 30.0%
!!! TCAAGTTAGCCCTTTATTTT+AGG - tig0025415:32620-32639 Msa1422510:five_prime_UTR 30.0%
TCAAACCCACCTAAAATAAA+GGG + tig0025415:32632-32651 None:intergenic 30.0%
AAAGTAAACTGCATACATAC+AGG + tig0025415:32669-32688 None:intergenic 30.0%
TAGAATAGGTTAGAGATTGG+AGG + tig0025415:29137-29156 None:intergenic 35.0%
GGTAAAAGAGGAGATAGAAT+AGG + tig0025415:29151-29170 None:intergenic 35.0%
GTTAGGTTCAAAGGTAAAAG+AGG + tig0025415:29163-29182 None:intergenic 35.0%
TCCACCTGATATATGCAAAT+TGG - tig0025415:29373-29392 Msa1422510:CDS 35.0%
CTAGCCAATTTGCATATATC+AGG + tig0025415:29380-29399 None:intergenic 35.0%
CTGATATATGCAAATTGGCT+AGG - tig0025415:29378-29397 Msa1422510:CDS 35.0%
AAGAAGCTCTATGAAAAGCA+CGG + tig0025415:29409-29428 None:intergenic 35.0%
!!! TTCTTCTGCTGATTTTGTGT+GGG - tig0025415:29424-29443 Msa1422510:CDS 35.0%
GACATCTTTCTTAGTCATAG+TGG + tig0025415:29513-29532 None:intergenic 35.0%
!! TCTGGTGTAGGAAGTTTTAT+TGG - tig0025415:29706-29725 Msa1422510:CDS 35.0%
!! GTTTTATTGGACAAATGCAG+TGG - tig0025415:29719-29738 Msa1422510:CDS 35.0%
TTGGATTTACATTCCAACTG+AGG - tig0025415:29805-29824 Msa1422510:intron 35.0%
GAAACATAGCCTTCAAAACA+GGG + tig0025415:29913-29932 None:intergenic 35.0%
AGAAACATAGCCTTCAAAAC+AGG + tig0025415:29914-29933 None:intergenic 35.0%
!!! TGTTTTGAAGGCTATGTTTC+TGG - tig0025415:29913-29932 Msa1422510:intron 35.0%
!! TTTGATGGTGGCTAAATTGA+TGG + tig0025415:30163-30182 None:intergenic 35.0%
! TAGTTTGTGTAAGAGAAGGT+TGG - tig0025415:30204-30223 Msa1422510:intron 35.0%
TCTCACATTGAAATGAGACA+AGG - tig0025415:30243-30262 Msa1422510:intron 35.0%
GATAGTTGTTGACCCAATAT+AGG + tig0025415:30287-30306 None:intergenic 35.0%
TGTGTTTATAACGGTGTATG+CGG - tig0025415:30397-30416 Msa1422510:intron 35.0%
GGGTTGTTCAGATTATTCTT+TGG + tig0025415:30819-30838 None:intergenic 35.0%
AAAGCTTCCATCGTAATTTC+AGG + tig0025415:31279-31298 None:intergenic 35.0%
CTCATAAAGAAACTGCCATA+GGG + tig0025415:31306-31325 None:intergenic 35.0%
CTATGGCAGTTTCTTTATGA+GGG - tig0025415:31305-31324 Msa1422510:intron 35.0%
TATGGCAGTTTCTTTATGAG+GGG - tig0025415:31306-31325 Msa1422510:intron 35.0%
CCAAAGACACTTCACATAAT+TGG + tig0025415:31604-31623 None:intergenic 35.0%
! CCAATTATGTGAAGTGTCTT+TGG - tig0025415:31601-31620 Msa1422510:intron 35.0%
GCATATTATAATGAGAAGGG+GGG + tig0025415:31706-31725 None:intergenic 35.0%
CGCATATTATAATGAGAAGG+GGG + tig0025415:31707-31726 None:intergenic 35.0%
AGCAGTAATATTAACGGTTG+AGG + tig0025415:31732-31751 None:intergenic 35.0%
CTGTTTGTCTACAAACCAAT+TGG + tig0025415:31771-31790 None:intergenic 35.0%
TATTCACAGGTTCAAGAATG+TGG - tig0025415:32060-32079 Msa1422510:CDS 35.0%
TGGCATATCTTCAACAAATG+TGG - tig0025415:32080-32099 Msa1422510:intron 35.0%
CATATCTTCAACAAATGTGG+TGG - tig0025415:32083-32102 Msa1422510:intron 35.0%
CATAACTTTCAGACTCCAAT+TGG - tig0025415:32156-32175 Msa1422510:intron 35.0%
!! GTTTTGATGACTTTCCCAAT+TGG + tig0025415:32174-32193 None:intergenic 35.0%
GGAAAGTCATCAAAACGATT+GGG - tig0025415:32178-32197 Msa1422510:intron 35.0%
TGTAGAGAGTTGGAATCTAA+CGG + tig0025415:32251-32270 None:intergenic 35.0%
TAGATTCCAACTCTCTACAT+CGG - tig0025415:32252-32271 Msa1422510:CDS 35.0%
!! ATCTCAGAGTGTTATTTGCA+TGG - tig0025415:32289-32308 Msa1422510:CDS 35.0%
!! TCTCAGAGTGTTATTTGCAT+GGG - tig0025415:32290-32309 Msa1422510:CDS 35.0%
TTACCATGTTGGAGATTTCA+TGG - tig0025415:32330-32349 Msa1422510:CDS 35.0%
! CTTGATTTTTATGGGCTCAT+TGG + tig0025415:32365-32384 None:intergenic 35.0%
AGTCTTTCTCTAAACACAGT+TGG + tig0025415:32457-32476 None:intergenic 35.0%
!!! AGTTAGCCCTTTATTTTAGG+TGG - tig0025415:32623-32642 Msa1422510:five_prime_UTR 35.0%
!!! GTTAGCCCTTTATTTTAGGT+GGG - tig0025415:32624-32643 Msa1422510:five_prime_UTR 35.0%
CTCAAACCCACCTAAAATAA+AGG + tig0025415:32633-32652 None:intergenic 35.0%
GAGAAAAGGGTTAGGTTCAA+AGG + tig0025415:29172-29191 None:intergenic 40.0%
TGGATCAAGATGCATGAGTA+TGG + tig0025415:29357-29376 None:intergenic 40.0%
GCCAATTTGCATATATCAGG+TGG + tig0025415:29377-29396 None:intergenic 40.0%
!!! CTTCTTCTGCTGATTTTGTG+TGG - tig0025415:29423-29442 Msa1422510:CDS 40.0%
GCAAGAAACTTGTAGCATGA+TGG + tig0025415:29461-29480 None:intergenic 40.0%
TGTCAACCTAATCGCTTTGA+CGG - tig0025415:29545-29564 Msa1422510:CDS 40.0%
TGTTTAGGAGTCAAGACACA+TGG + tig0025415:29950-29969 None:intergenic 40.0%
! TATTTTTCATGTGGCAGCTG+AGG - tig0025415:30486-30505 Msa1422510:intron 40.0%
GAATAATCTGAACAACCCCA+TGG - tig0025415:30821-30840 Msa1422510:intron 40.0%
CAATAAAATCTCAGCCTGAC+CGG + tig0025415:31017-31036 None:intergenic 40.0%
CCTCATAAAGAAACTGCCAT+AGG + tig0025415:31307-31326 None:intergenic 40.0%
CCTATGGCAGTTTCTTTATG+AGG - tig0025415:31304-31323 Msa1422510:intron 40.0%
ATGGCAGTTTCTTTATGAGG+GGG - tig0025415:31307-31326 Msa1422510:intron 40.0%
GCAATGCCATATTCTATTCG+TGG - tig0025415:31526-31545 Msa1422510:intron 40.0%
! TGGGCAAATAGAAGCTTTTG+TGG + tig0025415:31584-31603 None:intergenic 40.0%
!! ATGTGGTGGGTTGAAGTAAT+AGG - tig0025415:32097-32116 Msa1422510:intron 40.0%
CTAGAGTTTGTATTCCCTGT+GGG - tig0025415:32124-32143 Msa1422510:intron 40.0%
TTATGCTGTAACTTCCCACA+GGG + tig0025415:32141-32160 None:intergenic 40.0%
GGGAAAGTCATCAAAACGAT+TGG - tig0025415:32177-32196 Msa1422510:intron 40.0%
TGCAACGATGATCAAGTTCA+TGG - tig0025415:32211-32230 Msa1422510:intron 40.0%
GTAGAGAGTTGGAATCTAAC+GGG + tig0025415:32250-32269 None:intergenic 40.0%
! CAATGGGCTTATTACCATGT+TGG - tig0025415:32319-32338 Msa1422510:CDS 40.0%
CAACCATGAAATCTCCAACA+TGG + tig0025415:32336-32355 None:intergenic 40.0%
GATTGTACTCATACCAAAGG+CGG - tig0025415:32403-32422 Msa1422510:CDS 40.0%
TGATTGCACTATCTATGCAG+AGG + tig0025415:32429-32448 None:intergenic 40.0%
ACATTCCAACTGAGGAATCC+AGG - tig0025415:29813-29832 Msa1422510:intron 45.0%
TCTATAGTGCATCTCTCACC+TGG + tig0025415:29834-29853 None:intergenic 45.0%
GTTTATAACGGTGTATGCGG+TGG - tig0025415:30400-30419 Msa1422510:intron 45.0%
GTGTATGCGGTGGACAATAA+GGG - tig0025415:30410-30429 Msa1422510:intron 45.0%
ATGTGGCAGCTGAGGTAAAA+GGG - tig0025415:30494-30513 Msa1422510:intron 45.0%
! GTGGTGGGACTGAAATCTAA+GGG + tig0025415:30965-30984 None:intergenic 45.0%
! CGGTCAGGCTGAGATTTTAT+TGG - tig0025415:31015-31034 Msa1422510:intron 45.0%
ATGGAAGCTTTCTCACCCTA+TGG - tig0025415:31288-31307 Msa1422510:intron 45.0%
GCTAGAGTTTGTATTCCCTG+TGG - tig0025415:32123-32142 Msa1422510:intron 45.0%
GTTATGCTGTAACTTCCCAC+AGG + tig0025415:32142-32161 None:intergenic 45.0%
ACGATGATCAAGTTCATGGC+TGG - tig0025415:32215-32234 Msa1422510:intron 45.0%
CGATGATCAAGTTCATGGCT+GGG - tig0025415:32216-32235 Msa1422510:intron 45.0%
TTCCAACTCTCTACATCGGA+CGG - tig0025415:32256-32275 Msa1422510:CDS 45.0%
!! AGTGTTATTTGCATGGGCCA+GGG - tig0025415:32296-32315 Msa1422510:CDS 45.0%
!! TATATTATATTAATAAACTT+AGG - tig0025415:31634-31653 Msa1422510:intron 5.0%
CAACCTAATCGCTTTGACGG+TGG - tig0025415:29548-29567 Msa1422510:CDS 50.0%
GTACCACCGTCAAAGCGATT+AGG + tig0025415:29554-29573 None:intergenic 50.0%
TCTCACCTGGATTCCTCAGT+TGG + tig0025415:29821-29840 None:intergenic 50.0%
GGTGTATGCGGTGGACAATA+AGG - tig0025415:30409-30428 Msa1422510:intron 50.0%
CATGTGGCAGCTGAGGTAAA+AGG - tig0025415:30493-30512 Msa1422510:intron 50.0%
TGTGGCAGCTGAGGTAAAAG+GGG - tig0025415:30495-30514 Msa1422510:intron 50.0%
!! GGTGGTGGGACTGAAATCTA+AGG + tig0025415:30966-30985 None:intergenic 50.0%
TCAGCCTGACCGGAAATCAT+GGG + tig0025415:31007-31026 None:intergenic 50.0%
!! GAGTGTTATTTGCATGGGCC+AGG - tig0025415:32295-32314 Msa1422510:CDS 50.0%
TGGTAATAAGCCCATTGCCC+TGG + tig0025415:32316-32335 None:intergenic 50.0%
GTGGCAGCTGAGGTAAAAGG+GGG - tig0025415:30496-30515 Msa1422510:intron 55.0%
TGCGGAAATCATGGGGTGGT+GGG + tig0025415:30980-30999 None:intergenic 55.0%
TGGGGTGGTGCGGAAATCAT+GGG + tig0025415:30988-31007 None:intergenic 55.0%
ATGGGGTGGTGCGGAAATCA+TGG + tig0025415:30989-31008 None:intergenic 55.0%
CAGCCTGACCGGAAATCATG+GGG + tig0025415:31006-31025 None:intergenic 55.0%
CTCAGCCTGACCGGAAATCA+TGG + tig0025415:31008-31027 None:intergenic 55.0%
GACCGTCCGATGTAGAGAGT+TGG + tig0025415:32261-32280 None:intergenic 55.0%
ATTTGCATGGGCCAGGGCAA+TGG - tig0025415:32302-32321 Msa1422510:CDS 55.0%
TTTGCATGGGCCAGGGCAAT+GGG - tig0025415:32303-32322 Msa1422510:CDS 55.0%
ATCTATGCAGAGGCCGCCTT+TGG + tig0025415:32419-32438 None:intergenic 55.0%
GTGCGGAAATCATGGGGTGG+TGG + tig0025415:30981-31000 None:intergenic 60.0%
GTGGTGCGGAAATCATGGGG+TGG + tig0025415:30984-31003 None:intergenic 60.0%
GGGGTGGTGCGGAAATCATG+GGG + tig0025415:30987-31006 None:intergenic 60.0%
CCGGAAATCATGGGGTGGTG+CGG + tig0025415:30998-31017 None:intergenic 60.0%
CCGCACCACCCCATGATTTC+CGG - tig0025415:30995-31014 Msa1422510:intron 60.0%
CCTGACCGGAAATCATGGGG+TGG + tig0025415:31003-31022 None:intergenic 60.0%
CCACCCCATGATTTCCGGTC+AGG - tig0025415:31000-31019 Msa1422510:intron 60.0%
Chromosome Type Strat End Strand Name
tig0025415 gene 29097 32716 29097 ID=Msa1422510;Name=Msa1422510
tig0025415 mRNA 29097 32716 29097 ID=Msa1422510-mRNA-1;Parent=Msa1422510;Name=Msa1422510-mRNA-1;_AED=0.08;_eAED=0.08;_QI=145|1|1|1|1|1|3|227|291
tig0025415 exon 29097 29744 29097 ID=Msa1422510-mRNA-1:exon:2659;Parent=Msa1422510-mRNA-1
tig0025415 exon 31979 32097 31979 ID=Msa1422510-mRNA-1:exon:2658;Parent=Msa1422510-mRNA-1
tig0025415 exon 32236 32716 32236 ID=Msa1422510-mRNA-1:exon:2657;Parent=Msa1422510-mRNA-1
tig0025415 five_prime_UTR 32572 32716 32572 ID=Msa1422510-mRNA-1:five_prime_utr;Parent=Msa1422510-mRNA-1
tig0025415 CDS 32236 32571 32236 ID=Msa1422510-mRNA-1:cds;Parent=Msa1422510-mRNA-1
tig0025415 CDS 31979 32097 31979 ID=Msa1422510-mRNA-1:cds;Parent=Msa1422510-mRNA-1
tig0025415 CDS 29324 29744 29324 ID=Msa1422510-mRNA-1:cds;Parent=Msa1422510-mRNA-1
tig0025415 three_prime_UTR 29097 29323 29097 ID=Msa1422510-mRNA-1:three_prime_utr;Parent=Msa1422510-mRNA-1
Gene Sequence

>Msa1422510

ATGGGGTCTAGTATTTCTTCAACTGCATCTATAAGAGAAAACAATAACGAAGACTCTAATTCATCATCATCAAGAACGGGTCTTTGTGATATTGCAGAGAGTTGCATCTCTTCCATACTCATGCATCTTGATCCACCTGATATATGCAAATTGGCTAGGGTCAACCGTGCTTTTCATAGAGCTTCTTCTGCTGATTTTGTGTGGGAATCAAAGTTACCATCATGCTACAAGTTTCTTGCTTATAAATTTCTTGGTGAAGAAAATCTTTCCACTATGACTAAGAAAGATGTCTACACAAAACTATGTCAACCTAATCGCTTTGACGGTGGTACCAAAGAAGTTTTATTGGACAAATGCAGTGGACAAGTTTGTTTGTTCATGTCATCAAAGTCTTTGAAGATAACAGGAATAGATGATAGAAGATATTGGATTTACATTCCAACTGAGGAATCCAGGTTCAAGAATGTGGCATATCTTCAACAAATGTGGTGGGTTGAAGTAATAGGAGAGCTAGAGTTTGTATTCCCTGTGGGAAGTTACAGCATAACTTTCAGACTCCAATTGGGAAAGTCATCAAAACGATTGGGCAGACGTGTGTGCAACGATGATCAAGTTCATGGCTGGGACATCAAGCCCGTTAGATTCCAACTCTCTACATCGGACGGTCAGCGTTCAATCTCAGAGTGTTATTTGCATGGGCCAGGGCAATGGGCTTATTACCATGTTGGAGATTTCATGGTTGTAAAGCCCAATGAGCCCATAAAAATCAAGTTTTCTTTGGCTCAAATTGATTGTACTCATACCAAAGGCGGCCTCTGCATAGATAGTGCAATCATTTCTCCAACTGTGTTTAGAGAAAGACTCAAAAAATTATAG

Protein sequence

>Msa1422510

MGSSISSTASIRENNNEDSNSSSSRTGLCDIAESCISSILMHLDPPDICKLARVNRAFHRASSADFVWESKLPSCYKFLAYKFLGEENLSTMTKKDVYTKLCQPNRFDGGTKEVLLDKCSGQVCLFMSSKSLKITGIDDRRYWIYIPTEESRFKNVAYLQQMWWVEVIGELEFVFPVGSYSITFRLQLGKSSKRLGRRVCNDDQVHGWDIKPVRFQLSTSDGQRSISECYLHGPGQWAYYHVGDFMVVKPNEPIKIKFSLAQIDCTHTKGGLCIDSAIISPTVFRERLKKL*