AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0181050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181050 MtrunA17_Chr1g0203721 94.541 458 23 1 187 644 428 883 0.0 874
Msa0181050 MtrunA17_Chr1g0203721 93.229 192 13 0 1 192 1 192 1.53e-121 382
Msa0181050 MtrunA17_Chr6g0458391 47.938 194 101 0 190 383 573 766 4.56e-56 203
Msa0181050 MtrunA17_Chr6g0458391 51.562 128 60 1 59 186 221 346 2.70e-34 139
Msa0181050 MtrunA17_Chr6g0458391 52.756 127 55 3 65 190 93 215 2.42e-32 133
Msa0181050 MtrunA17_Chr3g0082121 40.299 268 151 3 179 445 390 649 1.00e-42 164
Msa0181050 MtrunA17_Chr3g0082121 52.632 95 44 1 69 162 49 143 2.32e-23 105
Msa0181050 MtrunA17_Chr2g0324011 32.857 210 140 1 192 400 377 586 4.58e-34 137
Msa0181050 MtrunA17_Chr5g0448511 25.153 326 232 4 180 499 189 508 4.41e-27 115
Msa0181050 MtrunA17_Chr5g0448761 26.102 295 201 4 190 476 432 717 3.47e-26 114
Msa0181050 MtrunA17_Chr5g0448761 37.736 106 62 2 66 167 63 168 4.30e-12 69.3
Msa0181050 MtrunA17_Chr3g0118611 27.536 276 186 6 187 458 307 572 6.97e-25 110
Msa0181050 MtrunA17_Chr5g0401121 49.474 95 47 1 69 162 62 156 3.05e-24 99.8
Msa0181050 MtrunA17_Chr8g0363841 31.220 205 128 4 186 382 378 577 1.25e-23 105
Msa0181050 MtrunA17_Chr5g0440451 27.206 272 184 5 191 458 414 675 8.34e-23 103
Msa0181050 MtrunA17_Chr2g0329031 26.772 254 170 5 191 439 371 613 9.69e-22 100
Msa0181050 MtrunA17_Chr2g0329031 40.000 95 54 2 69 163 20 111 1.17e-11 68.2
Msa0181050 MtrunA17_Chr1g0202341 25.368 272 199 3 186 454 412 682 1.42e-21 99.4
Msa0181050 MtrunA17_Chr1g0207551 28.916 249 170 3 192 439 399 641 2.01e-21 99.4
Msa0181050 MtrunA17_Chr4g0033611 35.032 157 90 5 27 180 47 194 4.86e-19 87.4
Msa0181050 MtrunA17_Chr3g0080351 26.190 252 179 2 187 437 428 673 7.94e-19 91.3
Msa0181050 MtrunA17_Chr3g0080351 36.036 111 58 1 66 163 79 189 1.20e-12 71.2
Msa0181050 MtrunA17_Chr2g0329421 37.755 98 60 1 65 162 29 125 2.22e-16 78.6
Msa0181050 MtrunA17_Chr2g0287061 26.538 260 183 3 179 436 499 752 4.70e-16 82.0
Msa0181050 MtrunA17_Chr2g0287061 36.364 99 50 1 65 163 185 270 1.55e-12 70.9
Msa0181050 MtrunA17_Chr2g0287061 37.374 99 49 1 65 163 31 116 7.36e-12 68.6
Msa0181050 MtrunA17_Chr2g0291581 27.451 204 140 3 187 382 418 621 1.46e-15 80.5
Msa0181050 MtrunA17_Chr5g0441581 22.593 270 194 7 187 445 382 647 1.93e-15 80.1
Msa0181050 MtrunA17_Chr7g0233911 31.343 134 78 2 65 184 36 169 7.25e-15 74.3
Msa0181050 MtrunA17_Chr1g0198761 22.381 210 142 4 181 383 418 613 3.01e-13 73.2
Msa0181050 MtrunA17_Chr2g0308841 21.698 212 164 2 176 385 19 230 4.61e-13 69.7
Msa0181050 MtrunA17_Chr7g0238821 36.111 108 66 3 69 175 3 108 1.63e-12 64.3
Msa0181050 MtrunA17_Chr2g0329361 36.111 108 61 2 65 167 63 167 2.97e-12 67.4
Msa0181050 MtrunA17_Chr7g0258861 33.636 110 71 2 65 173 12 120 3.08e-12 68.2
Msa0181050 MtrunA17_Chr3g0078041 37.755 98 60 1 66 162 53 150 8.24e-12 65.5
Msa0181050 MtrunA17_Chr2g0287651 22.791 215 159 4 176 386 424 635 1.09e-11 68.2
Msa0181050 MtrunA17_Chr2g0287651 34.314 102 63 3 69 167 81 181 9.43e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181050 AT4G38170.1 25.597 293 195 3 187 478 203 473 9.76e-29 121
Msa0181050 AT3G22170.2 26.471 272 194 2 186 457 422 687 4.86e-26 114
Msa0181050 AT3G22170.2 28.415 183 95 4 2 163 16 183 5.94e-12 69.3
Msa0181050 AT3G22170.1 26.471 272 194 2 186 457 422 687 4.86e-26 114
Msa0181050 AT3G22170.1 28.415 183 95 4 2 163 16 183 5.94e-12 69.3
Msa0181050 AT2G32250.2 28.214 280 187 6 190 463 361 632 1.62e-25 112
Msa0181050 AT2G32250.2 37.755 98 58 1 66 163 41 135 2.06e-11 67.8
Msa0181050 AT2G32250.4 28.214 280 187 6 190 463 361 632 1.62e-25 112
Msa0181050 AT2G32250.4 37.755 98 58 1 66 163 41 135 2.06e-11 67.8
Msa0181050 AT2G32250.6 28.214 280 187 6 190 463 361 632 1.74e-25 112
Msa0181050 AT2G32250.6 37.755 98 58 1 66 163 41 135 2.08e-11 67.8
Msa0181050 AT2G32250.1 28.214 280 187 6 190 463 361 632 1.74e-25 112
Msa0181050 AT2G32250.1 37.755 98 58 1 66 163 41 135 2.08e-11 67.8
Msa0181050 AT2G32250.3 28.214 280 187 6 190 463 361 632 1.74e-25 112
Msa0181050 AT2G32250.3 37.755 98 58 1 66 163 41 135 2.08e-11 67.8
Msa0181050 AT2G32250.8 28.214 280 187 6 190 463 320 591 2.33e-25 112
Msa0181050 AT2G32250.8 37.895 95 56 1 69 163 3 94 5.04e-11 66.6
Msa0181050 AT2G32250.7 28.214 280 187 6 190 463 320 591 2.36e-25 112
Msa0181050 AT2G32250.7 37.895 95 56 1 69 163 3 94 5.14e-11 66.2
Msa0181050 AT2G32250.5 28.214 280 187 6 190 463 361 632 2.39e-25 112
Msa0181050 AT2G32250.5 37.755 98 58 1 66 163 41 135 1.84e-11 67.8
Msa0181050 AT4G38180.1 30.412 194 134 1 190 382 441 634 1.05e-24 110
Msa0181050 AT4G38180.1 33.143 175 97 3 13 167 6 180 7.30e-16 82.0
Msa0181050 AT4G15090.1 23.195 457 289 11 186 636 413 813 6.91e-24 107
Msa0181050 AT4G15090.5 23.195 457 289 11 186 636 413 813 6.91e-24 107
Msa0181050 AT4G15090.3 23.195 457 289 11 186 636 413 813 6.91e-24 107
Msa0181050 AT4G15090.2 23.195 457 289 11 186 636 413 813 6.91e-24 107
Msa0181050 AT4G15090.4 23.195 457 289 11 186 636 413 813 6.91e-24 107
Msa0181050 AT2G27110.2 27.586 261 180 5 189 448 387 639 9.35e-22 100
Msa0181050 AT2G27110.1 27.586 261 180 5 189 448 387 639 9.35e-22 100
Msa0181050 AT2G27110.3 27.586 261 180 5 189 448 242 494 1.40e-21 100
Msa0181050 AT3G06250.2 28.405 257 172 5 190 444 514 760 5.60e-21 98.2
Msa0181050 AT3G06250.2 34.783 115 61 2 66 180 193 293 2.33e-12 70.9
Msa0181050 AT3G06250.2 35.354 99 51 1 65 163 30 115 4.40e-12 69.7
Msa0181050 AT3G06250.1 28.405 257 172 5 190 444 514 760 5.60e-21 98.2
Msa0181050 AT3G06250.1 34.783 115 61 2 66 180 193 293 2.33e-12 70.9
Msa0181050 AT3G06250.1 35.354 99 51 1 65 163 30 115 4.40e-12 69.7
Msa0181050 AT3G06250.3 28.405 257 172 5 190 444 514 760 5.60e-21 98.2
Msa0181050 AT3G06250.3 34.783 115 61 2 66 180 193 293 2.33e-12 70.9
Msa0181050 AT3G06250.3 35.354 99 51 1 65 163 30 115 4.40e-12 69.7
Msa0181050 AT5G18960.2 27.027 259 169 6 192 444 540 784 4.48e-20 95.5
Msa0181050 AT5G18960.2 30.464 151 84 3 13 163 1 130 1.34e-12 71.6
Msa0181050 AT5G18960.2 38.679 106 51 2 66 171 214 305 1.36e-12 71.6
Msa0181050 AT5G18960.1 27.027 259 169 6 192 444 540 784 4.48e-20 95.5
Msa0181050 AT5G18960.1 30.464 151 84 3 13 163 1 130 1.34e-12 71.6
Msa0181050 AT5G18960.1 38.679 106 51 2 66 171 214 305 1.36e-12 71.6
Msa0181050 AT1G76320.2 25.200 250 176 3 192 439 356 596 1.68e-19 93.6
Msa0181050 AT1G76320.1 25.200 250 176 3 192 439 356 596 1.82e-19 93.6
Msa0181050 AT1G76320.4 25.200 250 176 3 192 439 356 596 1.82e-19 93.6
Msa0181050 AT1G76320.3 25.200 250 176 3 192 439 356 596 4.65e-19 92.0
Msa0181050 AT3G07500.1 42.593 108 61 1 65 172 35 141 1.90e-18 85.1
Msa0181050 AT4G19990.6 28.520 277 190 4 190 462 365 637 2.95e-18 89.7
Msa0181050 AT4G19990.2 28.520 277 190 4 190 462 365 637 2.95e-18 89.7
Msa0181050 AT1G52520.1 27.509 269 182 6 186 444 433 698 2.96e-18 89.4
Msa0181050 AT4G19990.5 28.520 277 190 4 190 462 365 637 3.51e-18 89.4
Msa0181050 AT4G19990.3 28.520 277 190 4 190 462 365 637 3.83e-18 89.4
Msa0181050 AT4G19990.4 28.520 277 190 4 190 462 365 637 3.83e-18 89.4
Msa0181050 AT4G19990.7 28.520 277 190 4 190 462 379 651 4.17e-18 89.0
Msa0181050 AT4G19990.1 28.520 277 190 4 190 462 308 580 4.26e-18 89.0
Msa0181050 AT3G59470.3 39.796 98 58 1 65 162 72 168 5.49e-18 84.7
Msa0181050 AT3G59470.1 39.796 98 58 1 65 162 72 168 5.49e-18 84.7
Msa0181050 AT3G59470.2 39.796 98 58 1 65 162 84 180 7.14e-18 84.3
Msa0181050 AT2G43280.1 36.735 98 61 1 66 162 25 122 2.53e-13 69.7
Msa0181050 AT4G12850.4 32.653 98 63 1 65 162 13 107 2.87e-13 67.8
Msa0181050 AT4G12850.2 32.653 98 63 1 65 162 13 107 6.80e-12 63.9
Msa0181050 AT4G12850.1 32.653 98 63 1 65 162 13 107 1.19e-11 64.3
Msa0181050 AT1G80010.1 24.762 210 151 4 180 382 452 661 3.98e-11 66.6

Find 145 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTCGGACTGCAACAATTT+TGG 0.148412 1_4:-69151874 None:intergenic
AGGATTCTGAATGAGGATTT+TGG 0.176822 1_4:-69154783 None:intergenic
TAATATGAATGATGAATATT+TGG 0.181624 1_4:-69154996 None:intergenic
AAGTGTATTTGATCTAAATT+TGG 0.221536 1_4:+69155040 Msa0181050:three_prime_UTR
CAGCTTGCTACAACCATCTT+AGG 0.224643 1_4:-69153696 None:intergenic
CGGACTCATGGTATGTGTTT+TGG 0.233173 1_4:-69154600 None:intergenic
GATTATGTTGTGCTTCAAAA+TGG 0.267872 1_4:-69152243 None:intergenic
ATGCAAGGTTGGGTAATTTC+AGG 0.281403 1_4:+69153643 Msa0181050:CDS
TTAGAAAAGATTGGATTAAT+AGG 0.287407 1_4:+69152050 Msa0181050:CDS
GGCATTGCCAATACAGGATA+TGG 0.302964 1_4:-69154876 None:intergenic
CTTACCTGCAAAGGGAGATT+TGG 0.310345 1_4:-69154122 None:intergenic
CCTCCACTATCCTTTCAAAA+TGG 0.316329 1_4:-69153236 None:intergenic
ACTTGGAACATCCAATAGTT+TGG 0.334138 1_4:+69151838 Msa0181050:CDS
CACATTCAAGTCCAAACTAT+TGG 0.341769 1_4:-69151849 None:intergenic
CATGCATTGAACCACTTCAT+TGG 0.347987 1_4:-69154373 None:intergenic
CCGAACGTTCTTCACGCTAA+TGG 0.356305 1_4:+69151890 Msa0181050:CDS
AACAACATGTTAGAATTGAT+TGG 0.361206 1_4:-69152280 None:intergenic
TACATGGTATGGTGGTTTCT+AGG 0.366745 1_4:+69152080 Msa0181050:CDS
TCAACCAAATCTCCCTTTGC+AGG 0.367806 1_4:+69154118 Msa0181050:CDS
GGCTTTGTCAACACAGTGTT+CGG 0.372860 1_4:+69151950 Msa0181050:CDS
GGTTCAATGTTAGAAAAGAT+TGG 0.384400 1_4:+69152041 Msa0181050:CDS
CCACAGACTTGTCAAGTTAT+CGG 0.386090 1_4:+69153734 Msa0181050:CDS
GATGTCAAAGGCTTTCATTT+AGG 0.388977 1_4:+69153147 Msa0181050:CDS
GTATAGAGAATGGGAGAAAT+GGG 0.389543 1_4:+69153092 Msa0181050:CDS
GGGATGTCTTCCAAAGCTAA+TGG 0.397500 1_4:+69153299 Msa0181050:CDS
TGAAATATTTCAAATGCTCT+TGG 0.400052 1_4:-69153363 None:intergenic
TGTATAGAGAATGGGAGAAA+TGG 0.401167 1_4:+69153091 Msa0181050:CDS
TTTGGTTGAGATGAAACATA+TGG 0.404147 1_4:-69154104 None:intergenic
AGAAGTTTGGCGGTTGGAAC+AGG 0.408816 1_4:-69154440 None:intergenic
TGTTGGTTAGAATAGAAGTT+TGG 0.411083 1_4:-69154453 None:intergenic
GAGTATAAAGTGAATACATT+TGG 0.412707 1_4:+69153450 Msa0181050:CDS
TGTATTATCTGAAGAATTGA+AGG 0.418492 1_4:-69153496 None:intergenic
ACCACATTACCCATTAGCTT+TGG 0.425279 1_4:-69153309 None:intergenic
AACATTGAACCCCATCAATC+TGG 0.425557 1_4:-69152029 None:intergenic
ACAACATGTTAGAATTGATT+GGG 0.429453 1_4:-69152279 None:intergenic
AGTCAGAACTTCGGTATCTA+TGG 0.430265 1_4:-69154822 None:intergenic
TGGACATGCGACTGAGGATC+AGG 0.436653 1_4:+69153929 Msa0181050:CDS
AATAATGGCATTGCCAATAC+AGG 0.438574 1_4:-69154882 None:intergenic
GGAGACGAGAACTGGATGTT+TGG 0.438770 1_4:+69152174 Msa0181050:CDS
CTCTTCCCTTTGTTTAAGAC+CGG 0.439983 1_4:+69155079 Msa0181050:three_prime_UTR
CATCGGAAGGAGACGAGAAC+TGG 0.445746 1_4:+69152166 Msa0181050:CDS
GAGAAATGGGCTGTCTGCTT+TGG 0.447459 1_4:+69153105 Msa0181050:CDS
TAACAAGTATGCCAGATTGA+TGG 0.451658 1_4:+69152018 Msa0181050:CDS
AATGGCTCTCAAACTCAATC+TGG 0.454597 1_4:+69151908 Msa0181050:CDS
ATAATCAAACTGATTCAGAT+AGG 0.455395 1_4:+69154024 Msa0181050:CDS
AACAAGTATGCCAGATTGAT+GGG 0.458593 1_4:+69152019 Msa0181050:CDS
TGATGATCTAACACAAGATC+AGG 0.463119 1_4:-69154405 None:intergenic
TCCTCAGTCGCATGTCCATT+CGG 0.464228 1_4:-69153924 None:intergenic
GTCAACACAGTGTTCGGAAT+CGG 0.464277 1_4:+69151956 Msa0181050:CDS
GGATGTCTTCCAAAGCTAAT+GGG 0.465360 1_4:+69153300 Msa0181050:CDS
AGAAGCTAGTGATGAAATGA+AGG 0.466016 1_4:+69153278 Msa0181050:CDS
ATCTACATGAATACTATTTG+AGG 0.467176 1_4:-69153871 None:intergenic
GAGATGGATGTATAGAGAAT+GGG 0.471472 1_4:+69153083 Msa0181050:CDS
GGTCGAACCATATCCTGTAT+TGG 0.475597 1_4:+69154869 Msa0181050:three_prime_UTR
CTCCCTCCGGTCTTAAACAA+AGG 0.475629 1_4:-69155085 None:intergenic
TGTTGCATCTGATTATTGCT+TGG 0.479286 1_4:-69154625 None:intergenic
TGATAAAAGCTTACCTGCAA+AGG 0.481590 1_4:-69154131 None:intergenic
TGCAAGGTTGGGTAATTTCA+GGG 0.481977 1_4:+69153644 Msa0181050:CDS
CAGACAACAGTATTTGAAGA+AGG 0.483624 1_4:-69154062 None:intergenic
AGCTTGCTACAACCATCTTA+GGG 0.484144 1_4:-69153695 None:intergenic
GAGGCAACTTGACGAAGTTA+TGG 0.484472 1_4:+69153797 Msa0181050:CDS
AATTGAACTACATCAAGGTC+AGG 0.492101 1_4:-69153207 None:intergenic
AATTCAAGATAACCCTAAGA+TGG 0.492105 1_4:+69153683 Msa0181050:CDS
CTCGATATATCTTGAAGAGA+TGG 0.495398 1_4:+69153613 Msa0181050:CDS
AATTGACAGGACCGCTACAC+TGG 0.496426 1_4:+69153977 Msa0181050:CDS
AAGCAATAATCAGATGCAAC+AGG 0.498238 1_4:+69154627 Msa0181050:CDS
ATGGTCACACAGCAAAATAC+AGG 0.502031 1_4:-69154803 None:intergenic
TCTGGTAATGCATCAGCAAA+TGG 0.509074 1_4:+69151926 Msa0181050:CDS
TAGGAGTAAGGTACATGGTA+TGG 0.509545 1_4:+69152069 Msa0181050:CDS
ACGATATCCCTCTCTGGAGC+AGG 0.509622 1_4:-69152110 None:intergenic
GATGGTGATCATAACAACTT+AGG 0.510043 1_4:+69151785 Msa0181050:CDS
GATAAAAGCTTACCTGCAAA+GGG 0.510969 1_4:-69154130 None:intergenic
CCATTAGCGTGAAGAACGTT+CGG 0.511332 1_4:-69151890 None:intergenic
ATTATGTTGTGCTTCAAAAT+GGG 0.511977 1_4:-69152242 None:intergenic
TGAGATGAAACATATGGAGA+TGG 0.517004 1_4:-69154098 None:intergenic
GAGATGAAACATATGGAGAT+GGG 0.517572 1_4:-69154097 None:intergenic
ATGGACAAAAGATGCAAGGT+TGG 0.517774 1_4:+69153632 Msa0181050:CDS
TAGAATAGAAGTTTGGCGGT+TGG 0.518493 1_4:-69154446 None:intergenic
TCCCTCCGGTCTTAAACAAA+GGG 0.519160 1_4:-69155084 None:intergenic
AAAATACAGGATTCTGAATG+AGG 0.519697 1_4:-69154790 None:intergenic
ATCATTACTCGTCAACAAGA+TGG 0.520020 1_4:+69152205 Msa0181050:CDS
TGAGATGGATGTATAGAGAA+TGG 0.522848 1_4:+69153082 Msa0181050:CDS
GAAAATGTTGATGTTGGACT+TGG 0.524439 1_4:+69151821 Msa0181050:CDS
TTTCCTACGATATCCCTCTC+TGG 0.525239 1_4:-69152116 None:intergenic
TATTGCTTGGCACGGACTCA+TGG 0.526252 1_4:-69154612 None:intergenic
TGGTTAGAATAGAAGTTTGG+CGG 0.528921 1_4:-69154450 None:intergenic
CATGTAGAAAATGTTGATGT+TGG 0.531700 1_4:+69151815 Msa0181050:CDS
AGATTGGATTAATAGGAGTA+AGG 0.541743 1_4:+69152057 Msa0181050:CDS
GATTATAATTCACCGTTGGT+TGG 0.543940 1_4:-69154007 None:intergenic
CAATAGTTTGGACTTGAATG+TGG 0.544732 1_4:+69151850 Msa0181050:CDS
TGGACAAAAGATGCAAGGTT+GGG 0.547513 1_4:+69153633 Msa0181050:CDS
TTGCCTTTCTCAACTATCGC+AGG 0.548639 1_4:+69154485 Msa0181050:CDS
TTGTGTTGCTCAAGCTGTGG+AGG 0.559431 1_4:+69152324 Msa0181050:CDS
TTCCCTTTGTTTAAGACCGG+AGG 0.560342 1_4:+69155082 Msa0181050:three_prime_UTR
GTTTGATTATAATTCACCGT+TGG 0.560586 1_4:-69154011 None:intergenic
ATAAACTCCAGCGAAATGAA+TGG 0.563219 1_4:+69153058 Msa0181050:intron
GTCAACCAGCACAAAAGAGA+TGG 0.564837 1_4:+69153417 Msa0181050:CDS
ATATTAAAAGATACCCCGTC+CGG 0.573728 1_4:+69155013 Msa0181050:three_prime_UTR
AGATCAAATACACTTAAGAC+CGG 0.574251 1_4:-69155032 None:intergenic
TAAGAAATTGAACTACATCA+AGG 0.574535 1_4:-69153212 None:intergenic
AAAGGCAAGGAGAACTCTGT+TGG 0.577643 1_4:-69154470 None:intergenic
CACAGTGTTCGGAATCGGTA+CGG 0.578865 1_4:+69151961 Msa0181050:CDS
TCCAAAGCTAATGGGTAATG+TGG 0.580465 1_4:+69153308 Msa0181050:CDS
AATCTTGATATTGAAAAGTG+AGG 0.582977 1_4:+69153833 Msa0181050:CDS
ACAGGACCGCTACACTGGAT+AGG 0.587540 1_4:+69153982 Msa0181050:CDS
AAATTTACCTGCTCCAGAGA+GGG 0.588352 1_4:+69152103 Msa0181050:CDS
AAGAGCTTCTGAATCTGTGG+AGG 0.588474 1_4:+69153758 Msa0181050:CDS
TACTGTGAAGAAACATCGGA+AGG 0.591189 1_4:+69152153 Msa0181050:CDS
AGCGAAATGAATGGTTGAGA+TGG 0.591609 1_4:+69153067 Msa0181050:intron
AAATACACTTAAGACCGGAC+GGG 0.592534 1_4:-69155027 None:intergenic
CCATTCGGAAAGATCACCGC+AGG 0.593497 1_4:-69153909 None:intergenic
GAGTAAGCGAAGAAATTGAC+AGG 0.593964 1_4:+69153964 Msa0181050:CDS
ACACCTGCGATAGTTGAGAA+AGG 0.595685 1_4:-69154488 None:intergenic
GGCAAGAGCTTCTGAATCTG+TGG 0.597094 1_4:+69153755 Msa0181050:CDS
GAGTAAGGTACATGGTATGG+TGG 0.599166 1_4:+69152072 Msa0181050:CDS
CATCTGATTATTGCTTGGCA+CGG 0.603767 1_4:-69154620 None:intergenic
CAAATACACTTAAGACCGGA+CGG 0.604119 1_4:-69155028 None:intergenic
TCCGAATGGACATGCGACTG+AGG 0.607571 1_4:+69153923 Msa0181050:CDS
ACTGGATAGGTGCCAACCAA+CGG 0.611215 1_4:+69153995 Msa0181050:CDS
AGATGAAACATATGGAGATG+GGG 0.614637 1_4:-69154096 None:intergenic
AATACACTTAAGACCGGACG+GGG 0.617779 1_4:-69155026 None:intergenic
TGTATGAAGTTTGAGCATGT+AGG 0.618522 1_4:+69153531 Msa0181050:CDS
CTCTTCAAGATATATCGAGA+TGG 0.620754 1_4:-69153609 None:intergenic
TCAACAAGATGGAAAATACC+AGG 0.623065 1_4:+69152216 Msa0181050:CDS
CCTGCGGTGATCTTTCCGAA+TGG 0.627373 1_4:+69153909 Msa0181050:CDS
GTGCTTCAAAATGGGTAACC+TGG 0.628259 1_4:-69152234 None:intergenic
GACTCTGCATAACGTATCAG+AGG 0.628578 1_4:+69154841 Msa0181050:exon
CATAACGTATCAGAGGATCA+TGG 0.631520 1_4:+69154848 Msa0181050:exon
GATGAAACATATGGAGATGG+GGG 0.631905 1_4:-69154095 None:intergenic
AGAGATGGACAAAAGATGCA+AGG 0.632488 1_4:+69153628 Msa0181050:CDS
TGCTTCAGAAAGTGAGCCTG+CGG 0.635679 1_4:+69153893 Msa0181050:CDS
CAACTTGACGAAGTTATGGA+AGG 0.645660 1_4:+69153801 Msa0181050:CDS
GAAGCTAGTGATGAAATGAA+GGG 0.646836 1_4:+69153279 Msa0181050:CDS
CCGATAACTTGACAAGTCTG+TGG 0.655057 1_4:-69153734 None:intergenic
ATTAATAGGAGTAAGGTACA+TGG 0.662022 1_4:+69152064 Msa0181050:CDS
TGCGATAGTTGAGAAAGGCA+AGG 0.663759 1_4:-69154483 None:intergenic
AGAGCTTCTGAATCTGTGGA+GGG 0.666121 1_4:+69153759 Msa0181050:CDS
GAAATTTACCTGCTCCAGAG+AGG 0.668278 1_4:+69152102 Msa0181050:CDS
GGTAATGCATCAGCAAATGG+AGG 0.677979 1_4:+69151929 Msa0181050:CDS
GTTATGCAGAGTCAGAACTT+CGG 0.680514 1_4:-69154831 None:intergenic
TTGGCACCTATCCAGTGTAG+CGG 0.682153 1_4:-69153988 None:intergenic
ACAAGTATGCCAGATTGATG+GGG 0.683870 1_4:+69152020 Msa0181050:CDS
AGGGTTATCAGTTTGCTGTG+AGG 0.684882 1_4:+69153778 Msa0181050:CDS
ATGAAACATATGGAGATGGG+GGG 0.693657 1_4:-69154094 None:intergenic
GCTCCAGAGAGGGATATCGT+AGG 0.703657 1_4:+69152113 Msa0181050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATTTATTTGATTGATATA+TGG + chr1_4:69154151-69154170 Msa0181050:intron 15.0%
!! GAAATAAAAAATAAAGAGAA+CGG + chr1_4:69154301-69154320 Msa0181050:intron 15.0%
!! TTGGTTATTTACAAAAAAAA+AGG - chr1_4:69154980-69154999 None:intergenic 15.0%
!! TAATATGAATGATGAATATT+TGG - chr1_4:69154999-69155018 None:intergenic 15.0%
!! TTAGAAAAGATTGGATTAAT+AGG + chr1_4:69152050-69152069 Msa0181050:CDS 20.0%
!! AAGATAATTGTCATAATTCA+TGG - chr1_4:69152443-69152462 None:intergenic 20.0%
!!! AATTTCTTAACCATTTTGAA+AGG + chr1_4:69153226-69153245 Msa0181050:CDS 20.0%
!!! ATTTTCTCATTTGTTTTACA+GGG + chr1_4:69154333-69154352 Msa0181050:intron 20.0%
!! TATAAAAAAAACCTAATGAC+TGG - chr1_4:69154522-69154541 None:intergenic 20.0%
!!! ATATCATGAATATTTTACTC+AGG + chr1_4:69154567-69154586 Msa0181050:intron 20.0%
!!! ATTATTTTTGTTGTACAGTT+GGG + chr1_4:69154899-69154918 Msa0181050:three_prime_UTR 20.0%
!! AAGTGTATTTGATCTAAATT+TGG + chr1_4:69155040-69155059 Msa0181050:three_prime_UTR 20.0%
!! ATTTTACTGTGAAGAAACAT+CGG + chr1_4:69152149-69152168 Msa0181050:CDS 25.0%
! ATTATGTTGTGCTTCAAAAT+GGG - chr1_4:69152245-69152264 None:intergenic 25.0%
! ACAACATGTTAGAATTGATT+GGG - chr1_4:69152282-69152301 None:intergenic 25.0%
! AACAACATGTTAGAATTGAT+TGG - chr1_4:69152283-69152302 None:intergenic 25.0%
!! GTTGACTCATATCATAATTT+GGG + chr1_4:69152346-69152365 Msa0181050:intron 25.0%
! AGTATGACGAATACAAAATT+AGG + chr1_4:69152391-69152410 Msa0181050:intron 25.0%
!! ACAAGATAACAAATCTTTTC+TGG + chr1_4:69152581-69152600 Msa0181050:intron 25.0%
!! CAAGATAACAAATCTTTTCT+GGG + chr1_4:69152582-69152601 Msa0181050:intron 25.0%
!!! AGATTTTTTGTAGATGTCAA+AGG + chr1_4:69153135-69153154 Msa0181050:CDS 25.0%
! TAAGAAATTGAACTACATCA+AGG - chr1_4:69153215-69153234 None:intergenic 25.0%
! TGAAATATTTCAAATGCTCT+TGG - chr1_4:69153366-69153385 None:intergenic 25.0%
! GAGTATAAAGTGAATACATT+TGG + chr1_4:69153450-69153469 Msa0181050:CDS 25.0%
! TGTATTATCTGAAGAATTGA+AGG - chr1_4:69153499-69153518 None:intergenic 25.0%
! AATCTTGATATTGAAAAGTG+AGG + chr1_4:69153833-69153852 Msa0181050:CDS 25.0%
! ATCTACATGAATACTATTTG+AGG - chr1_4:69153874-69153893 None:intergenic 25.0%
!! ATAATCAAACTGATTCAGAT+AGG + chr1_4:69154024-69154043 Msa0181050:CDS 25.0%
!!! GATTTTCTCATTTGTTTTAC+AGG + chr1_4:69154332-69154351 Msa0181050:intron 25.0%
!! TGTTAATTTTTCCAGTCATT+AGG + chr1_4:69154508-69154527 Msa0181050:intron 25.0%
! ACAGGTAAACATTTACTTAA+TGG + chr1_4:69154645-69154664 Msa0181050:intron 25.0%
! CAACTGTACAACAAAAATAA+TGG - chr1_4:69154900-69154919 None:intergenic 25.0%
!!! CATTATTTTTGTTGTACAGT+TGG + chr1_4:69154898-69154917 Msa0181050:three_prime_UTR 25.0%
CATGTAGAAAATGTTGATGT+TGG + chr1_4:69151815-69151834 Msa0181050:CDS 30.0%
GGTTCAATGTTAGAAAAGAT+TGG + chr1_4:69152041-69152060 Msa0181050:CDS 30.0%
AGATTGGATTAATAGGAGTA+AGG + chr1_4:69152057-69152076 Msa0181050:CDS 30.0%
ATTAATAGGAGTAAGGTACA+TGG + chr1_4:69152064-69152083 Msa0181050:CDS 30.0%
GATTATGTTGTGCTTCAAAA+TGG - chr1_4:69152246-69152265 None:intergenic 30.0%
! GGTTGACTCATATCATAATT+TGG + chr1_4:69152345-69152364 Msa0181050:intron 30.0%
CTTAAAGCTGAACTAGATTT+GGG - chr1_4:69152373-69152392 None:intergenic 30.0%
ACTTAAAGCTGAACTAGATT+TGG - chr1_4:69152374-69152393 None:intergenic 30.0%
ACAATTATCTTCATTCTGTG+AGG + chr1_4:69152452-69152471 Msa0181050:intron 30.0%
CAATTATCTTCATTCTGTGA+GGG + chr1_4:69152453-69152472 Msa0181050:intron 30.0%
!!! GTTTGATGGGTTATTTTCAA+AGG + chr1_4:69152506-69152525 Msa0181050:intron 30.0%
TGTATGGCATAAAAAAATGC+TGG - chr1_4:69152547-69152566 None:intergenic 30.0%
ACACCTAAAAACTGTACAAA+TGG - chr1_4:69152694-69152713 None:intergenic 30.0%
AGACCATCGAATCATTTAAT+TGG + chr1_4:69152764-69152783 Msa0181050:intron 30.0%
ATTCGTCATCTTTAACCAAA+TGG - chr1_4:69152951-69152970 None:intergenic 30.0%
AATCCTTTGCAAATGATCTA+AGG + chr1_4:69152968-69152987 Msa0181050:intron 30.0%
!! TAACCATTTTGAAAGGATAG+TGG + chr1_4:69153233-69153252 Msa0181050:CDS 30.0%
! TATCAAGAACTTTTAGTGCA+TGG - chr1_4:69153569-69153588 None:intergenic 30.0%
AATTCAAGATAACCCTAAGA+TGG + chr1_4:69153683-69153702 Msa0181050:CDS 30.0%
GTTTGATTATAATTCACCGT+TGG - chr1_4:69154014-69154033 None:intergenic 30.0%
TTTGGTTGAGATGAAACATA+TGG - chr1_4:69154107-69154126 None:intergenic 30.0%
GCATATTTGATATAGAGATC+AGG + chr1_4:69154201-69154220 Msa0181050:intron 30.0%
! GTTTTATGCTCGTTAACTTT+TGG + chr1_4:69154256-69154275 Msa0181050:intron 30.0%
!!! TTTGTTTTACAGGGCTTATT+TGG + chr1_4:69154342-69154361 Msa0181050:intron 30.0%
! TGTTGGTTAGAATAGAAGTT+TGG - chr1_4:69154456-69154475 None:intergenic 30.0%
!! TGGTATGTGTTTTGGATTAT+AGG - chr1_4:69154595-69154614 None:intergenic 30.0%
!! CTTTGTGTATATTTGCTGTA+GGG + chr1_4:69154745-69154764 Msa0181050:intron 30.0%
AAAATACAGGATTCTGAATG+AGG - chr1_4:69154793-69154812 None:intergenic 30.0%
AGATCAAATACACTTAAGAC+CGG - chr1_4:69155035-69155054 None:intergenic 30.0%
GATGGTGATCATAACAACTT+AGG + chr1_4:69151785-69151804 Msa0181050:CDS 35.0%
GAAAATGTTGATGTTGGACT+TGG + chr1_4:69151821-69151840 Msa0181050:CDS 35.0%
ACTTGGAACATCCAATAGTT+TGG + chr1_4:69151838-69151857 Msa0181050:CDS 35.0%
CACATTCAAGTCCAAACTAT+TGG - chr1_4:69151852-69151871 None:intergenic 35.0%
CAATAGTTTGGACTTGAATG+TGG + chr1_4:69151850-69151869 Msa0181050:CDS 35.0%
TAACAAGTATGCCAGATTGA+TGG + chr1_4:69152018-69152037 Msa0181050:CDS 35.0%
AACAAGTATGCCAGATTGAT+GGG + chr1_4:69152019-69152038 Msa0181050:CDS 35.0%
ATCATTACTCGTCAACAAGA+TGG + chr1_4:69152205-69152224 Msa0181050:CDS 35.0%
TCAACAAGATGGAAAATACC+AGG + chr1_4:69152216-69152235 Msa0181050:CDS 35.0%
! TGGTAGATTACGACCATTTT+GGG + chr1_4:69152620-69152639 Msa0181050:intron 35.0%
AACAAACAACATCCCCAAAA+TGG - chr1_4:69152636-69152655 None:intergenic 35.0%
!! TTTTGGGGATGTTGTTTGTT+TGG + chr1_4:69152636-69152655 Msa0181050:intron 35.0%
CAGCCAATTAAATGATTCGA+TGG - chr1_4:69152770-69152789 None:intergenic 35.0%
AGCATCTTGTTCTGTGATAA+TGG - chr1_4:69152836-69152855 None:intergenic 35.0%
AATCATCGAAGCAATCAATG+TGG + chr1_4:69152858-69152877 Msa0181050:intron 35.0%
TCTTAAACATCTCAGCCATT+TGG + chr1_4:69152933-69152952 Msa0181050:intron 35.0%
ACTCCTTAGATCATTTGCAA+AGG - chr1_4:69152974-69152993 None:intergenic 35.0%
AGGAAGAATTTACTCATGCT+TGG + chr1_4:69153016-69153035 Msa0181050:intron 35.0%
GGAAGAATTTACTCATGCTT+GGG + chr1_4:69153017-69153036 Msa0181050:intron 35.0%
GAAGAATTTACTCATGCTTG+GGG + chr1_4:69153018-69153037 Msa0181050:intron 35.0%
AAGAATTTACTCATGCTTGG+GGG + chr1_4:69153019-69153038 Msa0181050:intron 35.0%
ATAAACTCCAGCGAAATGAA+TGG + chr1_4:69153058-69153077 Msa0181050:intron 35.0%
TGAGATGGATGTATAGAGAA+TGG + chr1_4:69153082-69153101 Msa0181050:CDS 35.0%
GAGATGGATGTATAGAGAAT+GGG + chr1_4:69153083-69153102 Msa0181050:CDS 35.0%
TGTATAGAGAATGGGAGAAA+TGG + chr1_4:69153091-69153110 Msa0181050:CDS 35.0%
GTATAGAGAATGGGAGAAAT+GGG + chr1_4:69153092-69153111 Msa0181050:CDS 35.0%
GATGTCAAAGGCTTTCATTT+AGG + chr1_4:69153147-69153166 Msa0181050:CDS 35.0%
AATTGAACTACATCAAGGTC+AGG - chr1_4:69153210-69153229 None:intergenic 35.0%
AGAAGCTAGTGATGAAATGA+AGG + chr1_4:69153278-69153297 Msa0181050:CDS 35.0%
GAAGCTAGTGATGAAATGAA+GGG + chr1_4:69153279-69153298 Msa0181050:CDS 35.0%
! AATATCCATCTCTTTTGTGC+TGG - chr1_4:69153425-69153444 None:intergenic 35.0%
TGTATGAAGTTTGAGCATGT+AGG + chr1_4:69153531-69153550 Msa0181050:CDS 35.0%
CTCTTCAAGATATATCGAGA+TGG - chr1_4:69153612-69153631 None:intergenic 35.0%
CTCGATATATCTTGAAGAGA+TGG + chr1_4:69153613-69153632 Msa0181050:CDS 35.0%
GATTATAATTCACCGTTGGT+TGG - chr1_4:69154010-69154029 None:intergenic 35.0%
CAGACAACAGTATTTGAAGA+AGG - chr1_4:69154065-69154084 None:intergenic 35.0%
AGATGAAACATATGGAGATG+GGG - chr1_4:69154099-69154118 None:intergenic 35.0%
GAGATGAAACATATGGAGAT+GGG - chr1_4:69154100-69154119 None:intergenic 35.0%
TGAGATGAAACATATGGAGA+TGG - chr1_4:69154101-69154120 None:intergenic 35.0%
GATAAAAGCTTACCTGCAAA+GGG - chr1_4:69154133-69154152 None:intergenic 35.0%
TGATAAAAGCTTACCTGCAA+AGG - chr1_4:69154134-69154153 None:intergenic 35.0%
!!! TGGTTTTGAAACCAATGAAG+TGG + chr1_4:69154362-69154381 Msa0181050:CDS 35.0%
TGATGATCTAACACAAGATC+AGG - chr1_4:69154408-69154427 None:intergenic 35.0%
TGGTTAGAATAGAAGTTTGG+CGG - chr1_4:69154453-69154472 None:intergenic 35.0%
TGTTGCATCTGATTATTGCT+TGG - chr1_4:69154628-69154647 None:intergenic 35.0%
AAGCAATAATCAGATGCAAC+AGG + chr1_4:69154627-69154646 Msa0181050:CDS 35.0%
!! GCTTTGTGTATATTTGCTGT+AGG + chr1_4:69154744-69154763 Msa0181050:intron 35.0%
!! TGTATATTTGCTGTAGGGTA+TGG + chr1_4:69154750-69154769 Msa0181050:intron 35.0%
! AGGATTCTGAATGAGGATTT+TGG - chr1_4:69154786-69154805 None:intergenic 35.0%
AATAATGGCATTGCCAATAC+AGG - chr1_4:69154885-69154904 None:intergenic 35.0%
ATATTAAAAGATACCCCGTC+CGG + chr1_4:69155013-69155032 Msa0181050:three_prime_UTR 35.0%
AATGGCTCTCAAACTCAATC+TGG + chr1_4:69151908-69151927 Msa0181050:CDS 40.0%
! TCTGGTAATGCATCAGCAAA+TGG + chr1_4:69151926-69151945 Msa0181050:CDS 40.0%
ACAAGTATGCCAGATTGATG+GGG + chr1_4:69152020-69152039 Msa0181050:CDS 40.0%
AACATTGAACCCCATCAATC+TGG - chr1_4:69152032-69152051 None:intergenic 40.0%
TAGGAGTAAGGTACATGGTA+TGG + chr1_4:69152069-69152088 Msa0181050:CDS 40.0%
TACATGGTATGGTGGTTTCT+AGG + chr1_4:69152080-69152099 Msa0181050:CDS 40.0%
AAATTTACCTGCTCCAGAGA+GGG + chr1_4:69152103-69152122 Msa0181050:CDS 40.0%
TACTGTGAAGAAACATCGGA+AGG + chr1_4:69152153-69152172 Msa0181050:CDS 40.0%
!! ATTTTGTGTTGCTCAAGCTG+TGG + chr1_4:69152321-69152340 Msa0181050:CDS 40.0%
TTCTGTGAGGGAAAGAGATA+TGG + chr1_4:69152465-69152484 Msa0181050:intron 40.0%
TCTGTGAGGGAAAGAGATAT+GGG + chr1_4:69152466-69152485 Msa0181050:intron 40.0%
AGGGAAAGAGATATGGGTAA+AGG + chr1_4:69152472-69152491 Msa0181050:intron 40.0%
TTTCTGGGCTGATGACAATA+TGG + chr1_4:69152597-69152616 Msa0181050:intron 40.0%
! GTGGTAGATTACGACCATTT+TGG + chr1_4:69152619-69152638 Msa0181050:intron 40.0%
! GGTAGATTACGACCATTTTG+GGG + chr1_4:69152621-69152640 Msa0181050:intron 40.0%
! CGGCCATTTGTACAGTTTTT+AGG + chr1_4:69152688-69152707 Msa0181050:intron 40.0%
! TGGCTGTTTCGAACTTTCAT+TGG + chr1_4:69152784-69152803 Msa0181050:intron 40.0%
AATGTCTGGGAAAAAGCCTA+AGG + chr1_4:69152810-69152829 Msa0181050:intron 40.0%
!! TGTTCTGTGATAATGGCCTT+AGG - chr1_4:69152829-69152848 None:intergenic 40.0%
!! TGGTTTTACCTGAAACAGAC+CGG + chr1_4:69152878-69152897 Msa0181050:intron 40.0%
TCTGCCAAACACATGTATAC+CGG - chr1_4:69152900-69152919 None:intergenic 40.0%
GAGTTGTATATATGACCCCA+AGG + chr1_4:69152990-69153009 Msa0181050:intron 40.0%
TAAATTCTTCCTCGTCCTTG+GGG - chr1_4:69153008-69153027 None:intergenic 40.0%
GTAAATTCTTCCTCGTCCTT+GGG - chr1_4:69153009-69153028 None:intergenic 40.0%
AGTAAATTCTTCCTCGTCCT+TGG - chr1_4:69153010-69153029 None:intergenic 40.0%
AGAATTTACTCATGCTTGGG+GGG + chr1_4:69153020-69153039 Msa0181050:intron 40.0%
ATCTCAACCATTCATTTCGC+TGG - chr1_4:69153068-69153087 None:intergenic 40.0%
AGCGAAATGAATGGTTGAGA+TGG + chr1_4:69153067-69153086 Msa0181050:intron 40.0%
CCTCCACTATCCTTTCAAAA+TGG - chr1_4:69153239-69153258 None:intergenic 40.0%
!! CCATTTTGAAAGGATAGTGG+AGG + chr1_4:69153236-69153255 Msa0181050:CDS 40.0%
GGATGTCTTCCAAAGCTAAT+GGG + chr1_4:69153300-69153319 Msa0181050:CDS 40.0%
! TCCAAAGCTAATGGGTAATG+TGG + chr1_4:69153308-69153327 Msa0181050:CDS 40.0%
! ACCACATTACCCATTAGCTT+TGG - chr1_4:69153312-69153331 None:intergenic 40.0%
AGAGATGGACAAAAGATGCA+AGG + chr1_4:69153628-69153647 Msa0181050:CDS 40.0%
ATGGACAAAAGATGCAAGGT+TGG + chr1_4:69153632-69153651 Msa0181050:CDS 40.0%
TGGACAAAAGATGCAAGGTT+GGG + chr1_4:69153633-69153652 Msa0181050:CDS 40.0%
ATGCAAGGTTGGGTAATTTC+AGG + chr1_4:69153643-69153662 Msa0181050:CDS 40.0%
TGCAAGGTTGGGTAATTTCA+GGG + chr1_4:69153644-69153663 Msa0181050:CDS 40.0%
!! AGCTTGCTACAACCATCTTA+GGG - chr1_4:69153698-69153717 None:intergenic 40.0%
CCACAGACTTGTCAAGTTAT+CGG + chr1_4:69153734-69153753 Msa0181050:CDS 40.0%
CAACTTGACGAAGTTATGGA+AGG + chr1_4:69153801-69153820 Msa0181050:CDS 40.0%
GAGTAAGCGAAGAAATTGAC+AGG + chr1_4:69153964-69153983 Msa0181050:CDS 40.0%
ATGAAACATATGGAGATGGG+GGG - chr1_4:69154097-69154116 None:intergenic 40.0%
GATGAAACATATGGAGATGG+GGG - chr1_4:69154098-69154117 None:intergenic 40.0%
CATGCATTGAACCACTTCAT+TGG - chr1_4:69154376-69154395 None:intergenic 40.0%
TAGAATAGAAGTTTGGCGGT+TGG - chr1_4:69154449-69154468 None:intergenic 40.0%
CATCTGATTATTGCTTGGCA+CGG - chr1_4:69154623-69154642 None:intergenic 40.0%
CGATAACCCACCAAAAGTTT+GGG - chr1_4:69154694-69154713 None:intergenic 40.0%
!!! CCAAACTTTTGGTGGGTTAT+CGG + chr1_4:69154692-69154711 Msa0181050:intron 40.0%
!!! CAAACTTTTGGTGGGTTATC+GGG + chr1_4:69154693-69154712 Msa0181050:intron 40.0%
ATGGTCACACAGCAAAATAC+AGG - chr1_4:69154806-69154825 None:intergenic 40.0%
AGTCAGAACTTCGGTATCTA+TGG - chr1_4:69154825-69154844 None:intergenic 40.0%
GTTATGCAGAGTCAGAACTT+CGG - chr1_4:69154834-69154853 None:intergenic 40.0%
CATAACGTATCAGAGGATCA+TGG + chr1_4:69154848-69154867 Msa0181050:exon 40.0%
AAATACACTTAAGACCGGAC+GGG - chr1_4:69155030-69155049 None:intergenic 40.0%
CAAATACACTTAAGACCGGA+CGG - chr1_4:69155031-69155050 None:intergenic 40.0%
! CGTTCGGACTGCAACAATTT+TGG - chr1_4:69151877-69151896 None:intergenic 45.0%
CCATTAGCGTGAAGAACGTT+CGG - chr1_4:69151893-69151912 None:intergenic 45.0%
GGTAATGCATCAGCAAATGG+AGG + chr1_4:69151929-69151948 Msa0181050:CDS 45.0%
! GGCTTTGTCAACACAGTGTT+CGG + chr1_4:69151950-69151969 Msa0181050:CDS 45.0%
GTCAACACAGTGTTCGGAAT+CGG + chr1_4:69151956-69151975 Msa0181050:CDS 45.0%
GAGTAAGGTACATGGTATGG+TGG + chr1_4:69152072-69152091 Msa0181050:CDS 45.0%
GAAATTTACCTGCTCCAGAG+AGG + chr1_4:69152102-69152121 Msa0181050:CDS 45.0%
TTTCCTACGATATCCCTCTC+TGG - chr1_4:69152119-69152138 None:intergenic 45.0%
GTGCTTCAAAATGGGTAACC+TGG - chr1_4:69152237-69152256 None:intergenic 45.0%
GATATGGGTAAAGGAGAAGC+TGG + chr1_4:69152481-69152500 Msa0181050:intron 45.0%
GTCATCAACATCGAGCTGTA+TGG - chr1_4:69152563-69152582 None:intergenic 45.0%
! GCAGAACAGACAGAGCTTTT+CGG + chr1_4:69152668-69152687 Msa0181050:intron 45.0%
ACTTTCATTGGCGCAATGTC+TGG + chr1_4:69152796-69152815 Msa0181050:intron 45.0%
CTTTCATTGGCGCAATGTCT+GGG + chr1_4:69152797-69152816 Msa0181050:intron 45.0%
CATGTATACCGGTCTGTTTC+AGG - chr1_4:69152889-69152908 None:intergenic 45.0%
CAGACCGGTATACATGTGTT+TGG + chr1_4:69152893-69152912 Msa0181050:intron 45.0%
TATATATGACCCCAAGGACG+AGG + chr1_4:69152996-69153015 Msa0181050:intron 45.0%
GGGATGTCTTCCAAAGCTAA+TGG + chr1_4:69153299-69153318 Msa0181050:CDS 45.0%
GTCAACCAGCACAAAAGAGA+TGG + chr1_4:69153417-69153436 Msa0181050:CDS 45.0%
!! CAGCTTGCTACAACCATCTT+AGG - chr1_4:69153699-69153718 None:intergenic 45.0%
CCGATAACTTGACAAGTCTG+TGG - chr1_4:69153737-69153756 None:intergenic 45.0%
AAGAGCTTCTGAATCTGTGG+AGG + chr1_4:69153758-69153777 Msa0181050:CDS 45.0%
AGAGCTTCTGAATCTGTGGA+GGG + chr1_4:69153759-69153778 Msa0181050:CDS 45.0%
!! AGGGTTATCAGTTTGCTGTG+AGG + chr1_4:69153778-69153797 Msa0181050:CDS 45.0%
GAGGCAACTTGACGAAGTTA+TGG + chr1_4:69153797-69153816 Msa0181050:CDS 45.0%
TCAACCAAATCTCCCTTTGC+AGG + chr1_4:69154118-69154137 Msa0181050:CDS 45.0%
CTTACCTGCAAAGGGAGATT+TGG - chr1_4:69154125-69154144 None:intergenic 45.0%
AAAGGCAAGGAGAACTCTGT+TGG - chr1_4:69154473-69154492 None:intergenic 45.0%
TGCGATAGTTGAGAAAGGCA+AGG - chr1_4:69154486-69154505 None:intergenic 45.0%
TTGCCTTTCTCAACTATCGC+AGG + chr1_4:69154485-69154504 Msa0181050:CDS 45.0%
ACACCTGCGATAGTTGAGAA+AGG - chr1_4:69154491-69154510 None:intergenic 45.0%
! CGGACTCATGGTATGTGTTT+TGG - chr1_4:69154603-69154622 None:intergenic 45.0%
! AAACCCCCTTCCCAAACTTT+TGG + chr1_4:69154681-69154700 Msa0181050:intron 45.0%
ACCCACCAAAAGTTTGGGAA+GGG - chr1_4:69154689-69154708 None:intergenic 45.0%
AACCCACCAAAAGTTTGGGA+AGG - chr1_4:69154690-69154709 None:intergenic 45.0%
CCGATAACCCACCAAAAGTT+TGG - chr1_4:69154695-69154714 None:intergenic 45.0%
GACTCTGCATAACGTATCAG+AGG + chr1_4:69154841-69154860 Msa0181050:exon 45.0%
GGTCGAACCATATCCTGTAT+TGG + chr1_4:69154869-69154888 Msa0181050:three_prime_UTR 45.0%
GGCATTGCCAATACAGGATA+TGG - chr1_4:69154879-69154898 None:intergenic 45.0%
AATACACTTAAGACCGGACG+GGG - chr1_4:69155029-69155048 None:intergenic 45.0%
CCGAACGTTCTTCACGCTAA+TGG + chr1_4:69151890-69151909 Msa0181050:CDS 50.0%
CACAGTGTTCGGAATCGGTA+CGG + chr1_4:69151961-69151980 Msa0181050:CDS 50.0%
GGAGACGAGAACTGGATGTT+TGG + chr1_4:69152174-69152193 Msa0181050:CDS 50.0%
! TTGTGTTGCTCAAGCTGTGG+AGG + chr1_4:69152324-69152343 Msa0181050:CDS 50.0%
AGGAGAAGCTGGACGTTTGA+TGG + chr1_4:69152492-69152511 Msa0181050:intron 50.0%
GGAGAAGCTGGACGTTTGAT+GGG + chr1_4:69152493-69152512 Msa0181050:intron 50.0%
CTGGGCTGATGACAATATGG+TGG + chr1_4:69152600-69152619 Msa0181050:intron 50.0%
!! GAGAAATGGGCTGTCTGCTT+TGG + chr1_4:69153105-69153124 Msa0181050:CDS 50.0%
GGCAAGAGCTTCTGAATCTG+TGG + chr1_4:69153755-69153774 Msa0181050:CDS 50.0%
TGCTTCAGAAAGTGAGCCTG+CGG + chr1_4:69153893-69153912 Msa0181050:CDS 50.0%
TCCTCAGTCGCATGTCCATT+CGG - chr1_4:69153927-69153946 None:intergenic 50.0%
AATTGACAGGACCGCTACAC+TGG + chr1_4:69153977-69153996 Msa0181050:CDS 50.0%
TTGGCACCTATCCAGTGTAG+CGG - chr1_4:69153991-69154010 None:intergenic 50.0%
ACTGGATAGGTGCCAACCAA+CGG + chr1_4:69153995-69154014 Msa0181050:CDS 50.0%
AGAAGTTTGGCGGTTGGAAC+AGG - chr1_4:69154443-69154462 None:intergenic 50.0%
TATTGCTTGGCACGGACTCA+TGG - chr1_4:69154615-69154634 None:intergenic 50.0%
CCACCAAAAGTTTGGGAAGG+GGG - chr1_4:69154687-69154706 None:intergenic 50.0%
CCCACCAAAAGTTTGGGAAG+GGG - chr1_4:69154688-69154707 None:intergenic 50.0%
! CCCCTTCCCAAACTTTTGGT+GGG + chr1_4:69154685-69154704 Msa0181050:intron 50.0%
!! GGTGGGTTATCGGGTGTTTA+TGG + chr1_4:69154702-69154721 Msa0181050:intron 50.0%
GGGTTATCGGGTGTTTATGG+TGG + chr1_4:69154705-69154724 Msa0181050:intron 50.0%
!! ACGATATCCCTCTCTGGAGC+AGG - chr1_4:69152113-69152132 None:intergenic 55.0%
GCTCCAGAGAGGGATATCGT+AGG + chr1_4:69152113-69152132 Msa0181050:CDS 55.0%
CATCGGAAGGAGACGAGAAC+TGG + chr1_4:69152166-69152185 Msa0181050:CDS 55.0%
TCATGCTTGGGGGGTTATGC+TGG + chr1_4:69153029-69153048 Msa0181050:intron 55.0%
CCATTCGGAAAGATCACCGC+AGG - chr1_4:69153912-69153931 None:intergenic 55.0%
CCTGCGGTGATCTTTCCGAA+TGG + chr1_4:69153909-69153928 Msa0181050:CDS 55.0%
TCCGAATGGACATGCGACTG+AGG + chr1_4:69153923-69153942 Msa0181050:CDS 55.0%
TGGACATGCGACTGAGGATC+AGG + chr1_4:69153929-69153948 Msa0181050:CDS 55.0%
ACAGGACCGCTACACTGGAT+AGG + chr1_4:69153982-69154001 Msa0181050:CDS 55.0%
! CCCCCTTCCCAAACTTTTGG+TGG + chr1_4:69154684-69154703 Msa0181050:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 69151782 69155101 69151782 ID=Msa0181050;Name=Msa0181050
chr1_4 mRNA 69151782 69155101 69151782 ID=Msa0181050-mRNA-1;Parent=Msa0181050;Name=Msa0181050-mRNA-1;_AED=0.15;_eAED=0.25;_QI=0|0.75|0.6|1|1|1|5|249|644
chr1_4 exon 69151782 69152345 69151782 ID=Msa0181050-mRNA-1:exon:22960;Parent=Msa0181050-mRNA-1
chr1_4 exon 69153069 69154139 69153069 ID=Msa0181050-mRNA-1:exon:22961;Parent=Msa0181050-mRNA-1
chr1_4 exon 69154354 69154506 69154354 ID=Msa0181050-mRNA-1:exon:22962;Parent=Msa0181050-mRNA-1
chr1_4 exon 69154589 69154648 69154589 ID=Msa0181050-mRNA-1:exon:22963;Parent=Msa0181050-mRNA-1
chr1_4 exon 69154766 69155101 69154766 ID=Msa0181050-mRNA-1:exon:22964;Parent=Msa0181050-mRNA-1
chr1_4 CDS 69151782 69152345 69151782 ID=Msa0181050-mRNA-1:cds;Parent=Msa0181050-mRNA-1
chr1_4 CDS 69153069 69154139 69153069 ID=Msa0181050-mRNA-1:cds;Parent=Msa0181050-mRNA-1
chr1_4 CDS 69154354 69154506 69154354 ID=Msa0181050-mRNA-1:cds;Parent=Msa0181050-mRNA-1
chr1_4 CDS 69154589 69154648 69154589 ID=Msa0181050-mRNA-1:cds;Parent=Msa0181050-mRNA-1
chr1_4 CDS 69154766 69154852 69154766 ID=Msa0181050-mRNA-1:cds;Parent=Msa0181050-mRNA-1
chr1_4 three_prime_UTR 69154853 69155101 69154853 ID=Msa0181050-mRNA-1:three_prime_utr;Parent=Msa0181050-mRNA-1
Gene Sequence

>Msa0181050

ATGGATGGTGATCATAACAACTTAGGTAATGTGCATGTAGAAAATGTTGATGTTGGACTTGGAACATCCAATAGTTTGGACTTGAATGTGGACCAAAATTGTTGCAGTCCGAACGTTCTTCACGCTAATGGCTCTCAAACTCAATCTGGTAATGCATCAGCAAATGGAGGCTTTGTCAACACAGTGTTCGGAATCGGTACGGTATTTGAGTCTGATGAACATGCATATAGATTCTATAACAAGTATGCCAGATTGATGGGGTTCAATGTTAGAAAAGATTGGATTAATAGGAGTAAGGTACATGGTATGGTGGTTTCTAGGAAATTTACCTGCTCCAGAGAGGGATATCGTAGGAAAGACGAGAGAGATTTTACTGTGAAGAAACATCGGAAGGAGACGAGAACTGGATGTTTGGCACACATGATCATTACTCGTCAACAAGATGGAAAATACCAGGTTACCCATTTTGAAGCACAACATAATCATGATGATATAAACCCAATCAATTCTAACATGTTGTTACTAGAGTTGCAAAATGAATTTTGTGTTGCTCAAGCTGTGGAGCGAAATGAATGGTTGAGATGGATGTATAGAGAATGGGAGAAATGGGCTGTCTGCTTTGGTCAGAATAGATTTTTTGTAGATGTCAAAGGCTTTCATTTAGGTGAGATGTTGTCTCACAAGCTTAGAAGCTATCTAAATCCTGACCTTGATGTAGTTCAATTTCTTAACCATTTTGAAAGGATAGTGGAGGAGCAACGATATAAAGAAATAGAAGCTAGTGATGAAATGAAGGGATGTCTTCCAAAGCTAATGGGTAATGTGGTTGTGTTGAAACATGCTAGTGTTGCTTATACTCCAAGAGCATTTGAAATATTTCAGCAACGATATGAGAACTCTTTGAATGTTATTGTCAACCAGCACAAAAGAGATGGATATTTGTTTGAGTATAAAGTGAATACATTTGGACATGCTAGACAGTACACTGTCACCTTCAATTCTTCAGATAATACAGTTGTCTGCAGTTGTATGAAGTTTGAGCATGTAGGTTTTCTTTGTAGCCATGCACTAAAAGTTCTTGATAATAGAAACATAAAAGTAGTTCCATCTCGATATATCTTGAAGAGATGGACAAAAGATGCAAGGTTGGGTAATTTCAGGGAGATTAAGCAATTTAAAATTCAAGATAACCCTAAGATGGTTGTAGCAAGCTGTTACAAAGATTTATGCCACAGACTTGTCAAGTTATCGGCAAGAGCTTCTGAATCTGTGGAGGGTTATCAGTTTGCTGTGAGGCAACTTGACGAAGTTATGGAAGGAGTGCAGAAAATCTTGATATTGAAAAGTGAGGAAGCTCAAGTTATCACCTCAAATAGTATTCATGTAGATGCTTCAGAAAGTGAGCCTGCGGTGATCTTTCCGAATGGACATGCGACTGAGGATCAGGATGAAAGTAACAGAGTAAGCGAAGAAATTGACAGGACCGCTACACTGGATAGGTGCCAACCAACGGTGAATTATAATCAAACTGATTCAGATAGGATTTTAAATGTAGAACCTTCTTCAAATACTGTTGTCTGCATTTCATGCCCCCCATCTCCATATGTTTCATCTCAACCAAATCTCCCTTTGCAGGGCTTATTTGGTTTTGAAACCAATGAAGTGGTTCAATGCATGTATGAACAGCCTGATCTTGTGTTAGATCATCAATCTAATACTAACCTGTTCCAACCGCCAAACTTCTATTCTAACCAACAGAGTTCTCCTTGCCTTTCTCAACTATCGCAGGAGCCTATAATCCAAAACACATACCATGAGTCCGTGCCAAGCAATAATCAGATGCAACAGGGTATGGATCTTGATATCCAAAATCCTCATTCAGAATCCTGTATTTTGCTGTGTGACCATAGATACCGAAGTTCTGACTCTGCATAA
Protein sequence

>Msa0181050

MDGDHNNLGNVHVENVDVGLGTSNSLDLNVDQNCCSPNVLHANGSQTQSGNASANGGFVNTVFGIGTVFESDEHAYRFYNKYARLMGFNVRKDWINRSKVHGMVVSRKFTCSREGYRRKDERDFTVKKHRKETRTGCLAHMIITRQQDGKYQVTHFEAQHNHDDINPINSNMLLLELQNEFCVAQAVERNEWLRWMYREWEKWAVCFGQNRFFVDVKGFHLGEMLSHKLRSYLNPDLDVVQFLNHFERIVEEQRYKEIEASDEMKGCLPKLMGNVVVLKHASVAYTPRAFEIFQQRYENSLNVIVNQHKRDGYLFEYKVNTFGHARQYTVTFNSSDNTVVCSCMKFEHVGFLCSHALKVLDNRNIKVVPSRYILKRWTKDARLGNFREIKQFKIQDNPKMVVASCYKDLCHRLVKLSARASESVEGYQFAVRQLDEVMEGVQKILILKSEEAQVITSNSIHVDASESEPAVIFPNGHATEDQDESNRVSEEIDRTATLDRCQPTVNYNQTDSDRILNVEPSSNTVVCISCPPSPYVSSQPNLPLQGLFGFETNEVVQCMYEQPDLVLDHQSNTNLFQPPNFYSNQQSSPCLSQLSQEPIIQNTYHESVPSNNQMQQGMDLDIQNPHSESCILLCDHRYRSSDSA*