AlfalfaGEDB | Msa1456610

M. sativa cultivar zhongmu-4 / Msa1456610

KEGG: K01595
GO: GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0008152 GO:0008964 GO:0009506 GO:0009507 GO:0009536 GO:0015977 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0030054 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055044 GO:0071704 GO:0071944 GO:0099402
PFAM: PF00311.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456610	XP_003607582.1	98.654	966	13	0	1	966	1	966	0.0	1976

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456610	sp\|Q9FV65\|CAPPC_FLATR	86.983	968	123	3	1	966	1	967	0.0	1734

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456610	G7JCL0	98.654	966	13	0	1	966	1	966	0.0	1976

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0182040	Msa1456610	0.800734	1.254370e-48	-8.615850e-47
Msa0608790	Msa1456610	0.979323	1.020140e-147	-8.615850e-47
Msa0649240	Msa1456610	0.980693	8.235050e-151	-8.615850e-47
Msa0649320	Msa1456610	0.901757	1.938922e-78	-8.615850e-47
Msa0708020	Msa1456610	0.809898	1.506754e-50	-8.615850e-47
Msa0876630	Msa1456610	0.801578	8.428100e-49	-8.615850e-47
Msa0978980	Msa1456610	0.802680	5.000583e-49	-8.615850e-47
Msa1127420	Msa1456610	0.804138	2.494302e-49	-8.615850e-47
Msa1136890	Msa1456610	-0.811901	5.551087e-51	-8.615850e-47
Msa1362590	Msa1456610	0.827805	1.277184e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456610	MtrunA17_Chr4g0041131	98.654	966	13	0	1	966	1	966	0.0	1976
Msa1456610	MtrunA17_Chr2g0325821	91.408	966	83	0	1	966	1	966	0.0	1820
Msa1456610	MtrunA17_Chr8g0360571	86.570	968	127	2	1	966	1	967	0.0	1742
Msa1456610	MtrunA17_Chr2g0315891	84.576	966	146	2	3	966	2	966	0.0	1695
Msa1456610	MtrunA17_Chr1g0198921	45.994	624	288	5	359	966	449	1039	1.71e-174	535
Msa1456610	MtrunA17_Chr1g0198921	39.223	283	156	6	77	359	71	337	2.94e-51	196
Msa1456610	MtrunA17_Chr0c01g0489521	46.166	639	279	8	359	966	548	1152	2.96e-172	533
Msa1456610	MtrunA17_Chr0c01g0489521	34.539	304	170	6	77	367	113	400	2.80e-45	177
Msa1456610	MtrunA17_Chr1g0148101	64.815	378	67	7	461	838	1	312	4.88e-150	446
Msa1456610	MtrunA17_Chr1g0148111	46.154	130	30	2	339	428	9	138	2.88e-25	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456610	AT2G42600.2	86.646	966	126	3	1	966	1	963	0.0	1730
Msa1456610	AT2G42600.1	86.646	966	126	3	1	966	1	963	0.0	1730
Msa1456610	AT2G42600.3	86.646	966	126	3	1	966	1	963	0.0	1730
Msa1456610	AT1G53310.2	85.626	967	138	1	1	966	1	967	0.0	1726
Msa1456610	AT1G53310.1	85.626	967	138	1	1	966	1	967	0.0	1726
Msa1456610	AT1G53310.3	85.626	967	138	1	1	966	1	967	0.0	1726
Msa1456610	AT3G14940.1	85.021	968	143	2	1	966	1	968	0.0	1714
Msa1456610	AT3G14940.2	85.021	968	143	2	1	966	1	968	0.0	1714
Msa1456610	AT1G68750.1	47.419	620	277	6	363	966	446	1032	6.10e-177	542
Msa1456610	AT1G68750.1	35.238	315	181	6	36	342	23	322	1.35e-46	181

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Find 267 sgRNAs with CRISPR-Local

Find 474 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATTTCGAAGGTATTC+GGG	0.321914	tig0037620:+5744	Msa1456610:five_prime_UTR
AAAGCATCAAAGACTTCAAG+AGG	0.582260	tig0037620:-7475	None:intergenic
AACAATGGAACGACCCTTAG+TGG	0.432444	tig0037620:-10484	None:intergenic
AACCAAGAGCCTTCTCCTCA+TGG	0.523734	tig0037620:+12165	Msa1456610:CDS
AACTGTTATGAGCTGTCTGC+TGG	0.415140	tig0037620:+7190	Msa1456610:CDS
AAGAGGAGGGACTGTAGGAA+GGG	0.437847	tig0037620:+10732	Msa1456610:CDS
AAGCATCAAAGACTTCAAGA+GGG	0.656351	tig0037620:-7474	None:intergenic
AAGCATGTGAGAGAATGACT+TGG	0.675389	tig0037620:-7299	None:intergenic
AAGGAAGTTCAGCAATGACA+CGG	0.660772	tig0037620:-10366	None:intergenic
AAGGATTAAGTTATTAAAGA+AGG	0.415758	tig0037620:+7366	Msa1456610:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATGATACTTTGCAAGGAAA+GGG	-	tig0037620:5864-5883	None:intergenic	30.0%
AGTCATGGAAGATTGTAATT+TGG	+	tig0037620:6380-6399	Msa1456610:intron	30.0%
ATCTCAAGTTCTTTGAATCT+GGG	-	tig0037620:6685-6704	None:intergenic	30.0%
TACATAAAACACACGATTCA+AGG	-	tig0037620:6804-6823	None:intergenic	30.0%
CGTAGTTCTTTGTAATTTCA+AGG	-	tig0037620:6854-6873	None:intergenic	30.0%
TTAAGACCAAATCAACAGTT+TGG	-	tig0037620:7507-7526	None:intergenic	30.0%
AAACTACTTTGAATGTTCAC+GGG	-	tig0037620:7900-7919	None:intergenic	30.0%
GAAACTACTTTGAATGTTCA+CGG	-	tig0037620:7901-7920	None:intergenic	30.0%
GAACATTCAAAGTAGTTTCA+AGG	+	tig0037620:7902-7921	Msa1456610:intron	30.0%
AGTTTCAAGGAGTTTAGATA+TGG	+	tig0037620:7915-7934	Msa1456610:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0037620	gene	5737	12897	5737	ID=Msa1456610;Name=Msa1456610
tig0037620	mRNA	5737	12897	5737	ID=Msa1456610-mRNA-1;Parent=Msa1456610;Name=Msa1456610-mRNA-1;_AED=0.05;_eAED=0.05;_QI=97\|1\|1\|1\|0.9\|0.81\|11\|162\|966
tig0037620	exon	5737	5818	5737	ID=Msa1456610-mRNA-1:exon:20807;Parent=Msa1456610-mRNA-1
tig0037620	exon	5968	6150	5968	ID=Msa1456610-mRNA-1:exon:20808;Parent=Msa1456610-mRNA-1
tig0037620	exon	7184	7578	7184	ID=Msa1456610-mRNA-1:exon:20809;Parent=Msa1456610-mRNA-1
tig0037620	exon	7675	7759	7675	ID=Msa1456610-mRNA-1:exon:20810;Parent=Msa1456610-mRNA-1
tig0037620	exon	8328	8550	8328	ID=Msa1456610-mRNA-1:exon:20811;Parent=Msa1456610-mRNA-1
tig0037620	exon	8802	8905	8802	ID=Msa1456610-mRNA-1:exon:20812;Parent=Msa1456610-mRNA-1
tig0037620	exon	9019	9106	9019	ID=Msa1456610-mRNA-1:exon:20813;Parent=Msa1456610-mRNA-1
tig0037620	exon	9335	9489	9335	ID=Msa1456610-mRNA-1:exon:20814;Parent=Msa1456610-mRNA-1
tig0037620	exon	10046	11044	10046	ID=Msa1456610-mRNA-1:exon:20815;Parent=Msa1456610-mRNA-1
tig0037620	exon	11800	12186	11800	ID=Msa1456610-mRNA-1:exon:20816;Parent=Msa1456610-mRNA-1
tig0037620	exon	12439	12897	12439	ID=Msa1456610-mRNA-1:exon:20817;Parent=Msa1456610-mRNA-1
tig0037620	five_prime_UTR	5737	5818	5737	ID=Msa1456610-mRNA-1:five_prime_utr;Parent=Msa1456610-mRNA-1
tig0037620	five_prime_UTR	5968	5982	5968	ID=Msa1456610-mRNA-1:five_prime_utr;Parent=Msa1456610-mRNA-1
tig0037620	CDS	5983	6150	5983	ID=Msa1456610-mRNA-1:cds;Parent=Msa1456610-mRNA-1
tig0037620	CDS	7184	7578	7184	ID=Msa1456610-mRNA-1:cds;Parent=Msa1456610-mRNA-1
tig0037620	CDS	7675	7759	7675	ID=Msa1456610-mRNA-1:cds;Parent=Msa1456610-mRNA-1
tig0037620	CDS	8328	8550	8328	ID=Msa1456610-mRNA-1:cds;Parent=Msa1456610-mRNA-1
tig0037620	CDS	8802	8905	8802	ID=Msa1456610-mRNA-1:cds;Parent=Msa1456610-mRNA-1
tig0037620	CDS	9019	9106	9019	ID=Msa1456610-mRNA-1:cds;Parent=Msa1456610-mRNA-1
tig0037620	CDS	9335	9489	9335	ID=Msa1456610-mRNA-1:cds;Parent=Msa1456610-mRNA-1
tig0037620	CDS	10046	11044	10046	ID=Msa1456610-mRNA-1:cds;Parent=Msa1456610-mRNA-1
tig0037620	CDS	11800	12186	11800	ID=Msa1456610-mRNA-1:cds;Parent=Msa1456610-mRNA-1
tig0037620	CDS	12439	12735	12439	ID=Msa1456610-mRNA-1:cds;Parent=Msa1456610-mRNA-1
tig0037620	three_prime_UTR	12736	12897	12736	ID=Msa1456610-mRNA-1:three_prime_utr;Parent=Msa1456610-mRNA-1

Gene Sequence

>Msa1456610

ATGACAAGTAGGAAGCTAGAGAAGATGGCTTCGATTGATGCTCAGTTGAGGTTGTTAGCACCTAGTAAGGTGTCTGATGATGATAAGCTTGTGGAGTATGATGCTTTGTTGCTTGATCGTTTCCTTGATATTCTTCAGGATTTGCATGGCCATGATATCCGAGAAACGGTTCAAAACTGTTATGAGCTGTCTGCTGGGTATGAAGGGAACAATAATCCTCAGAAGTTGGAGGAACTCGGGAACATGCTGACCGGTCTTGATGCTGGGGATTCTATCGTCATTGCCAAGTCATTCTCTCACATGCTTAACTTGGCCAATTTGGCAGAAGAAGTTCAAATTGCCTACCGCAGAAGGATTAAGTTATTAAAGAAGGGGGATTTTGGTGATGAGAACTCTGCCATCACTGAGTCAGACATTGAAGAGACCTTCAAGAGGCTTGTGAATCAACTGAAGAAGACCCCTCTTGAAGTCTTTGATGCTTTGAAGAGCCAAACTGTTGATTTGGTCTTAACTGCTCATCCTACCCAGTCTGTTCGCAGATCTTTGTTGCAGAAGCACGGAAGGGTCAGGGATTGTTTGACTCAGTTGTATGCAAAAGATATTACACCAGATGATAAGCAGGAACTTGACGAGGCTTTGCAAAGAGAGATTCAAGCTGCATTTCGCACCGATGAAATTCGAAGAACTCCTCCTACACCACAAGACGAAATGAGGGCAGGAATGAGCTACTTTCATGAGACAATCTGGAAAGGTGTACCAAAATTTTTGCGCCGCATTGACACCGCTCTGAAGAACATTGGAATAAATGAACGCATCCCATATAATGCCCCTATTATTCAATTCTCTTCATGGATGGGAGGAGATCGTGATGGAAACCCCAGAGTAACTCCTGAAGTTACAAGGGATGTGTGTTTGCTGGCTAGAATGATGGCTGCTAATCTGTACTTCTCTCAAATTGAGGATCTCATGTTTGAGTTGTCCATGTGGCGCTGCAATGATGAGCTACGTATTCGTGCTGAGGAACTTCACAGCTCAGCAAAAAGAGATGCAAAACATTATATTGAGTTTTGGAAACAGGTTCCTCCAACTGAGCCATATCGTGTTATTCTTGGTGATGTGAGGGACAAACTATATAATACACGTGAACATGCCCGACAGTTACTAGCCGATGGGAGCTCTGCAATACCTCAAGAGGCTATCTTCACAAATGTTGAACAGTTCTTGGAGCCTCTTGAACTATGCTATAGGTCATTGTGTGCATGTGGTGATCAACCAATAGCTGATGGAAGTCTTCTTGATTTCTTGCGGCAAGTTTCCACCTTCGGGCTTTCACTTGTGAAACTTGATATCCGTCAAGAATCAGACAGGCACACTGATGCTATGGATGCTATAACAAACCACTTGGAGATTGGATCTTATCGAGAATGGTCTGAGGAACGCAGGCAGGAATGGCTGTTGTCTGAGCTCAGTGGAAAGCGCCCTCTCTTTGGCCCCGATCTTCCTAAAACTGAAGAAATTGCTGATGTGCTGGATACCTTCCGTGTCATTGCTGAACTTCCTTCAGACAGCTTTGGTGCTTATATCATTTCAATGGCAACATCTCCATCTGATGTGCTTGCTGTAGAACTTTTACAACGTGAATGTGATGTGAAGCAGCCACTAAGGGTCGTTCCATTGTTTGAAAAACTTGCTGATCTTGAGGCTGCTCCTTCTGCAATAGCCCGCCTATTCTCTATAGAATGGTACAGAAACCGTATCAACGGAAAACAAGAAGTTATGATAGGATACTCAGACTCAGGAAAAGATGCTGGTCGTTTCTCTGCAGCTTGGGCAATGTACAAGGCTCAAGAAGAACTTATAAAGGTTGCAAAGGAGTTTGGTGTTAAGCTTACAATGTTCCATGGAAGAGGAGGGACTGTAGGAAGGGGAGGAGGCCCCACTCATCTTGCTATATTATCTCAGCCACCAGATACTATTCATGGCTCACTTCGGGTTACAGTTCAAGGTGAAGTTATTGAACAGTCATTTGGAGAGGAGCACTTGTGCTTCAGAACACTTCAGCGTTTCACTGCTGCTACACTTGAGCATGGAATGCACCCTCCCGTCTCACCAAAACCAGAATGGCGTACCCTCATGGATGAGATGGCTGTCATTGCAACAAAGGAGTATCGCTCCATTGTTTTTCTGGAACCTCGTTTTGTTGAATACTTCAGATGTGCAACTCCTGAGTTGGAGTATGGAAGAATGAACATTGGCAGCCGCCCGTCAAAACGAAAGCCAAGTGGAGGAATTGAATCACTCCGTGCTATCCCTTGGATCTTTGCCTGGACTCAGACAAGGTTTCACTTACCGGTATGGCTTGGCTTTGGAGCGGCATTCAAGCATGTAATTGAGAAGGATTCAAAGAATCTCCAAATGCTTCGAGATATGTATAATCAATGGCCATTCTTCAGGGTCACCCTTGACTTAGTTGAGATGGTGTTTGCCAAGGGAGACCCAGGGATCGCAACTCTTTACGACAAACTCCTAGTGTCAGATGAACTGTGGTCATTTGGAGAGAGATTAAGGTCTGCTTATGAAGAAACCAAGAGCCTTCTCCTCATGGTTGCTGGACACAAAGATATCCTTGAAGGAGACCCTTACTTGAAGCAAAGACTCCGTCTTCGTGATTCATACATCACAACCCTCAATGTCTTGCAAGCCTACACACTGAAGCGAATCCGTGATCCTGATTACCATGTGAAGTTGAGGCCACATTTGTCCAAGGACTGCATGGAATCAAGCAACCCGGCAGCAGAGCTTGTGAAACTCAATCCTACGAGTGACTATGCTCCTGGTTTGGAGGATACCCTTATTCTGACAATGAAGGGTATAGCTGCTGGCATGCAGAACACTGGTTAA

Protein sequence

>Msa1456610

MTSRKLEKMASIDAQLRLLAPSKVSDDDKLVEYDALLLDRFLDILQDLHGHDIRETVQNCYELSAGYEGNNNPQKLEELGNMLTGLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLLKKGDFGDENSAITESDIEETFKRLVNQLKKTPLEVFDALKSQTVDLVLTAHPTQSVRRSLLQKHGRVRDCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRIDTALKNIGINERIPYNAPIIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRIRAEELHSSAKRDAKHYIEFWKQVPPTEPYRVILGDVRDKLYNTREHARQLLADGSSAIPQEAIFTNVEQFLEPLELCYRSLCACGDQPIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDAMDAITNHLEIGSYREWSEERRQEWLLSELSGKRPLFGPDLPKTEEIADVLDTFRVIAELPSDSFGAYIISMATSPSDVLAVELLQRECDVKQPLRVVPLFEKLADLEAAPSAIARLFSIEWYRNRINGKQEVMIGYSDSGKDAGRFSAAWAMYKAQEELIKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPEWRTLMDEMAVIATKEYRSIVFLEPRFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIEKDSKNLQMLRDMYNQWPFFRVTLDLVEMVFAKGDPGIATLYDKLLVSDELWSFGERLRSAYEETKSLLLMVAGHKDILEGDPYLKQRLRLRDSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDCMESSNPAAELVKLNPTSDYAPGLEDTLILTMKGIAAGMQNTG*