Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183040 | sp|Q8LPJ4|AB2E_ARATH | 91.254 | 606 | 52 | 1 | 1 | 606 | 1 | 605 | 0.0 | 1152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183040 | G7IE72 | 99.835 | 606 | 1 | 0 | 1 | 606 | 1 | 606 | 0.0 | 1252 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0183040 | Msa0230670 | 0.903071 | 5.064947e-79 | -8.615850e-47 |
| Msa0183040 | Msa0277000 | 0.813579 | 2.383251e-51 | -8.615850e-47 |
| Msa0183040 | Msa0486140 | 0.872860 | 2.298400e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183040 | MtrunA17_Chr1g0211721 | 99.835 | 606 | 1 | 0 | 1 | 606 | 1 | 606 | 0.0 | 1252 |
| Msa0183040 | MtrunA17_Chr1g0156551 | 95.881 | 607 | 24 | 1 | 1 | 606 | 77 | 683 | 0.0 | 1208 |
| Msa0183040 | MtrunA17_Chr4g0002101 | 86.877 | 602 | 77 | 2 | 5 | 606 | 1 | 600 | 0.0 | 1079 |
| Msa0183040 | MtrunA17_Chr1g0156441 | 88.980 | 245 | 24 | 1 | 323 | 567 | 11 | 252 | 2.00e-158 | 454 |
| Msa0183040 | MtrunA17_Chr1g0156441 | 29.461 | 241 | 118 | 6 | 103 | 326 | 59 | 264 | 1.74e-24 | 103 |
| Msa0183040 | MtrunA17_Chr1g0156461 | 77.833 | 203 | 43 | 2 | 1 | 202 | 1 | 202 | 5.20e-110 | 328 |
| Msa0183040 | MtrunA17_Chr1g0156451 | 57.292 | 96 | 2 | 1 | 239 | 334 | 1 | 57 | 1.64e-24 | 96.7 |
| Msa0183040 | MtrunA17_Chr3g0129301 | 29.586 | 169 | 104 | 5 | 377 | 540 | 461 | 619 | 4.66e-11 | 65.9 |
| Msa0183040 | MtrunA17_Chr3g0130211 | 27.869 | 183 | 119 | 6 | 375 | 547 | 67 | 246 | 9.72e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183040 | AT4G19210.1 | 91.254 | 606 | 52 | 1 | 1 | 606 | 1 | 605 | 0.0 | 1152 |
| Msa0183040 | AT3G13640.1 | 78.218 | 606 | 129 | 1 | 1 | 606 | 1 | 603 | 0.0 | 1000 |
| Msa0183040 | AT4G30300.1 | 66.477 | 176 | 56 | 3 | 355 | 528 | 1 | 175 | 2.29e-70 | 225 |
| Msa0183040 | AT4G30300.1 | 30.000 | 160 | 94 | 3 | 104 | 263 | 21 | 162 | 6.00e-13 | 68.2 |
| Msa0183040 | AT4G33460.1 | 31.481 | 162 | 98 | 6 | 374 | 527 | 70 | 226 | 3.80e-11 | 64.7 |
Find 180 sgRNAs with CRISPR-Local
Find 378 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGTTTCTGATTGTAATT+TGG | 0.106806 | 1_4:-71815999 | Msa0183040:five_prime_UTR |
| CCTTCGGCAAGTTGATAATT+TGG | 0.141900 | 1_4:+71815552 | None:intergenic |
| CGTAGTGTTGGTGATCTTTC+AGG | 0.152447 | 1_4:-71814322 | Msa0183040:CDS |
| AGAGGGATGGAAAGGAATTT+AGG | 0.182612 | 1_4:+71816134 | None:intergenic |
| CAAGAGGTTCAGAATCTTTC+TGG | 0.182659 | 1_4:-71812365 | Msa0183040:CDS |
| CTGATTGTAATTTGGGATTT+AGG | 0.184019 | 1_4:-71815991 | Msa0183040:five_prime_UTR |
| ACATGTATATCTCAGCATTT+TGG | 0.193506 | 1_4:+71814260 | None:intergenic |
| CCAAAACTCAAGGCAATTTC+AGG | 0.203901 | 1_4:-71812765 | Msa0183040:CDS |
| GCAATTCAGATCCTCGAAAA+TGG | 0.208418 | 1_4:+71815147 | None:intergenic |
| GACTTTATTTGCTGTTTATA+TGG | 0.218246 | 1_4:-71813989 | Msa0183040:CDS |
| GCAAGTGTCTAACAGATAAT+TGG | 0.222574 | 1_4:+71812474 | None:intergenic |
| ACATTCCCTTGCACAGCTTT+TGG | 0.248703 | 1_4:+71814427 | None:intergenic |
| CCTGAAATTGCCTTGAGTTT+TGG | 0.257880 | 1_4:+71812765 | None:intergenic |
| CGAGCACGATCTTAGTGTTT+TGG | 0.269250 | 1_4:-71814023 | Msa0183040:CDS |
| TATCAACTTGCCGAAGGATT+TGG | 0.275167 | 1_4:-71815546 | Msa0183040:CDS |
| TGATGAACCTTCCAGTTATC+TGG | 0.286678 | 1_4:-71814236 | Msa0183040:CDS |
| TTGTTCCAACAGAAAATCTT+AGG | 0.290058 | 1_4:-71813892 | Msa0183040:CDS |
| GAATGGGTCGTTTGAGGAAA+TGG | 0.290577 | 1_4:+71816081 | None:intergenic |
| GTCGACTGCACTTAAGGTTT+TGG | 0.295828 | 1_4:-71815325 | Msa0183040:CDS |
| TCAGTTTCTGATTGTAATTT+GGG | 0.304584 | 1_4:-71815998 | Msa0183040:five_prime_UTR |
| TTTGAGGAAATGGGAGAGTT+GGG | 0.304723 | 1_4:+71816091 | None:intergenic |
| CAACAGAAAATCTTAGGTTT+CGG | 0.312251 | 1_4:-71813886 | Msa0183040:CDS |
| GAGGGATGGAAAGGAATTTA+GGG | 0.315570 | 1_4:+71816135 | None:intergenic |
| TCATCACATCTGATATAAAC+TGG | 0.317044 | 1_4:+71812417 | None:intergenic |
| AACAGAAAATCTTAGGTTTC+GGG | 0.326990 | 1_4:-71813885 | Msa0183040:CDS |
| ACCAAGCACTTGCCCCGGCC+TGG | 0.332750 | 1_4:+71815374 | None:intergenic |
| TAATTATAATTGCAGGTTGC+CGG | 0.348977 | 1_4:-71815400 | Msa0183040:intron |
| CTGTGTAGCTTAAAAGTATT+AGG | 0.350689 | 1_4:+71815497 | None:intergenic |
| GGGCAAGTGCTTGGTTTGGT+TGG | 0.352472 | 1_4:-71815366 | Msa0183040:CDS |
| CCCAGGCCGGGGCAAGTGCT+TGG | 0.354601 | 1_4:-71815375 | Msa0183040:CDS |
| GGCAAGTGCTTGGTTTGGTT+GGG | 0.358646 | 1_4:-71815365 | Msa0183040:CDS |
| GAAATCGTGCTCAACGATAA+AGG | 0.366245 | 1_4:+71811520 | None:intergenic |
| GGAGGTTTCTCTTACTTTCA+AGG | 0.366509 | 1_4:-71813864 | Msa0183040:intron |
| ACTACTTATTGAACAGTTGA+TGG | 0.367488 | 1_4:-71812390 | Msa0183040:CDS |
| GTCAAAATTTCCTGCCAATC+AGG | 0.370858 | 1_4:+71815170 | None:intergenic |
| AGGAAATTAACAAACCTATT+AGG | 0.371430 | 1_4:+71814163 | None:intergenic |
| CTGTTTCACATCCAGATAAC+TGG | 0.373313 | 1_4:+71814225 | None:intergenic |
| TGGGAAGTCGACTGCACTTA+AGG | 0.380143 | 1_4:-71815331 | Msa0183040:CDS |
| CAGGTTGCCGGTTCCCAGGC+CGG | 0.381117 | 1_4:-71815388 | Msa0183040:CDS |
| TTGGTTGGGACAAATGGAAT+TGG | 0.383851 | 1_4:-71815351 | Msa0183040:CDS |
| CTTGGTTTGGTTGGGACAAA+TGG | 0.384149 | 1_4:-71815357 | Msa0183040:CDS |
| ATTAATACTTGGATTTATAT+CGG | 0.384448 | 1_4:-71810749 | Msa0183040:three_prime_UTR |
| GCCGGGGCAAGTGCTTGGTT+TGG | 0.387478 | 1_4:-71815370 | Msa0183040:CDS |
| GCTCAATTTGATGCACTGTT+TGG | 0.390221 | 1_4:+71810994 | None:intergenic |
| AGGTTGCCGGTTCCCAGGCC+GGG | 0.393335 | 1_4:-71815387 | Msa0183040:CDS |
| ACTTGCCCCGGCCTGGGAAC+CGG | 0.394610 | 1_4:+71815381 | None:intergenic |
| TAACAGATAATTGGGACTTT+GGG | 0.395339 | 1_4:+71812483 | None:intergenic |
| TGGTTGGGACAAATGGAATT+GGG | 0.399770 | 1_4:-71815350 | Msa0183040:CDS |
| GATTCAAGTTTGTTGATCCT+TGG | 0.400390 | 1_4:+71811196 | None:intergenic |
| ATTCAAGTTTGTTGATCCTT+GGG | 0.401478 | 1_4:+71811197 | None:intergenic |
| TGCAGCAACAATACGCTGTT+CGG | 0.410104 | 1_4:+71811583 | None:intergenic |
| CAAACGACCCATTCTCTATT+CGG | 0.410737 | 1_4:-71816072 | Msa0183040:five_prime_UTR |
| ATCCTTGGGCGGAAATTAGT+TGG | 0.412838 | 1_4:+71811211 | None:intergenic |
| GGTCATTGCTCAGGCCTAAT+AGG | 0.417179 | 1_4:-71814177 | Msa0183040:intron |
| CTAACAGATAATTGGGACTT+TGG | 0.418945 | 1_4:+71812482 | None:intergenic |
| CCATCAAAGCATAACAAAAC+TGG | 0.419865 | 1_4:+71810781 | None:intergenic |
| TGGAAAATTGAAGCCCAACT+TGG | 0.425877 | 1_4:-71815301 | Msa0183040:CDS |
| AATGGGTCGTTTGAGGAAAT+GGG | 0.427611 | 1_4:+71816082 | None:intergenic |
| CAAGTGTCTAACAGATAATT+GGG | 0.435174 | 1_4:+71812475 | None:intergenic |
| ATTCCTTCTCTGACTGAGAA+AGG | 0.437002 | 1_4:+71813935 | None:intergenic |
| GGAATTAATATCTTCTTGTC+CGG | 0.438408 | 1_4:-71813917 | Msa0183040:CDS |
| TGATGCCTTGCCATAAAAGT+TGG | 0.440033 | 1_4:-71810941 | Msa0183040:three_prime_UTR |
| TTGAAACCTGACACTATAGA+AGG | 0.440943 | 1_4:-71812563 | Msa0183040:CDS |
| CATTCTAGAGGATGATTTGA+AGG | 0.442384 | 1_4:-71815108 | Msa0183040:intron |
| GTAGTGTTGGTGATCTTTCA+GGG | 0.443905 | 1_4:-71814321 | Msa0183040:CDS |
| TCCTTGGGCGGAAATTAGTT+GGG | 0.449811 | 1_4:+71811212 | None:intergenic |
| TTCAGGCTTCATGTAGTTGA+AGG | 0.451867 | 1_4:-71812748 | Msa0183040:CDS |
| CAACCGCAATGGCAAACCTT+TGG | 0.455169 | 1_4:+71814290 | None:intergenic |
| GCAGGAACCGCCTGATTGGC+AGG | 0.457134 | 1_4:-71815180 | Msa0183040:intron |
| CGTTGAAATATGCCTTCAAC+GGG | 0.462172 | 1_4:+71810911 | None:intergenic |
| TACTGTGAAACGACCCAAGT+TGG | 0.462614 | 1_4:+71815287 | None:intergenic |
| TTCACAGATTATTGTGATGC+TGG | 0.464457 | 1_4:-71812713 | Msa0183040:CDS |
| AGTTGTCCTGTCGTCAGAAC+CGG | 0.468418 | 1_4:-71815856 | Msa0183040:intron |
| GATCCACCTTCTATAGTGTC+AGG | 0.471777 | 1_4:+71812557 | None:intergenic |
| CAATTCAGATCCTCGAAAAT+GGG | 0.471862 | 1_4:+71815148 | None:intergenic |
| ATATCTGAGGAATTGTGTAT+TGG | 0.475022 | 1_4:-71815707 | Msa0183040:CDS |
| GAGTATAAACTCAGTCATCT+AGG | 0.476908 | 1_4:+71811131 | None:intergenic |
| GTATCTTTGTCCAAATCCTT+CGG | 0.478826 | 1_4:+71815536 | None:intergenic |
| AAGTTGTTCGGTCATTGCTC+AGG | 0.480515 | 1_4:-71814186 | Msa0183040:CDS |
| GGTTGCCGGTTCCCAGGCCG+GGG | 0.481360 | 1_4:-71815386 | Msa0183040:CDS |
| TGAAAGCTGCCCAAGTTGTT+CGG | 0.481445 | 1_4:-71814198 | Msa0183040:CDS |
| ATGGAATCGAATTGAATTGA+GGG | 0.482440 | 1_4:+71816026 | None:intergenic |
| GTTGCGTTATGCCTTTGTCT+TGG | 0.482528 | 1_4:-71812326 | Msa0183040:CDS |
| TGGATGCGGTATCTGTGTTA+AGG | 0.483465 | 1_4:-71815687 | Msa0183040:intron |
| TTTGCAGTACAGTCAATTGA+AGG | 0.484553 | 1_4:+71811449 | None:intergenic |
| ACTGTGAAACGACCCAAGTT+GGG | 0.485280 | 1_4:+71815288 | None:intergenic |
| CCAAGCACTTGCCCCGGCCT+GGG | 0.485916 | 1_4:+71815375 | None:intergenic |
| ATTTGCAGGAACCGCCTGAT+TGG | 0.486998 | 1_4:-71815184 | Msa0183040:intron |
| AGCATAAGTTTGAGCTTCCT+CGG | 0.496954 | 1_4:+71812810 | None:intergenic |
| TACTTACCGGTTCTGACGAC+AGG | 0.500661 | 1_4:+71815850 | None:intergenic |
| GTTTGAGGAAATGGGAGAGT+TGG | 0.501465 | 1_4:+71816090 | None:intergenic |
| ATAATTTGGATAGCTTCAAA+AGG | 0.502077 | 1_4:+71815566 | None:intergenic |
| AATTACAATCAGAAACTGAA+TGG | 0.502760 | 1_4:+71816002 | None:intergenic |
| CGTTGAGCACGATTTCATCA+TGG | 0.508016 | 1_4:-71811513 | Msa0183040:CDS |
| ATTGCAGGTTGCCGGTTCCC+AGG | 0.508516 | 1_4:-71815392 | Msa0183040:intron |
| TTGAGGAAATGGGAGAGTTG+GGG | 0.509571 | 1_4:+71816092 | None:intergenic |
| AATAGAGAATGGGTCGTTTG+AGG | 0.510816 | 1_4:+71816075 | None:intergenic |
| GACGACCTTCATTCGTATGC+TGG | 0.512536 | 1_4:-71812671 | Msa0183040:intron |
| CAGAAAGATTCTGAACCTCT+TGG | 0.512923 | 1_4:+71812366 | None:intergenic |
| ACTTGGATTTATATCGGTCA+TGG | 0.513895 | 1_4:-71810743 | None:intergenic |
| TGACACTTACAGATAAGAAA+AGG | 0.514344 | 1_4:+71811396 | None:intergenic |
| AGAGCTTACCGAATAGAGAA+TGG | 0.515912 | 1_4:+71816064 | None:intergenic |
| TGCTGTTTATATGGCAAACC+TGG | 0.517732 | 1_4:-71813980 | Msa0183040:CDS |
| ACCAAACCAAGCACTTGCCC+CGG | 0.520624 | 1_4:+71815369 | None:intergenic |
| TGTGCAAGGGAATGTGGGGC+AGG | 0.520706 | 1_4:-71814419 | Msa0183040:CDS |
| AGTGTCAGGTTTCAACAAAC+CGG | 0.521126 | 1_4:+71812571 | None:intergenic |
| CATCACATCTGATATAAACT+GGG | 0.522285 | 1_4:+71812418 | None:intergenic |
| TATGGCAAACCTGGTGCATA+TGG | 0.523361 | 1_4:-71813971 | Msa0183040:CDS |
| AAAAGCTGTGCAAGGGAATG+TGG | 0.523524 | 1_4:-71814425 | Msa0183040:CDS |
| GGAAAATTGAAGCCCAACTT+GGG | 0.525005 | 1_4:-71815300 | Msa0183040:CDS |
| TGAGCAATGACCGAACAACT+TGG | 0.525619 | 1_4:+71814188 | None:intergenic |
| TCTATCAGATAGATGTCTGC+AGG | 0.531946 | 1_4:+71811629 | None:intergenic |
| GACAGAGAGCAAAAGAATGC+TGG | 0.532220 | 1_4:-71811166 | Msa0183040:CDS |
| GAATACCAGCATACGAATGA+AGG | 0.534723 | 1_4:+71812666 | None:intergenic |
| TGTCCACAATCATTGCTGAC+TGG | 0.536125 | 1_4:-71811425 | Msa0183040:CDS |
| GCTCCAAAGGTTTGCCATTG+CGG | 0.537822 | 1_4:-71814293 | Msa0183040:CDS |
| GGGTGAATCTGATTAATACT+TGG | 0.538276 | 1_4:-71810760 | Msa0183040:three_prime_UTR |
| TTTAGGGTTTGATATTTAGA+CGG | 0.539610 | 1_4:+71816151 | None:intergenic |
| AATGGAATCGAATTGAATTG+AGG | 0.541272 | 1_4:+71816025 | None:intergenic |
| ATTGTGATGCTGGGTGAGAA+TGG | 0.542652 | 1_4:-71812703 | Msa0183040:CDS |
| CTTCCTTTCTCAGTCAGAGA+AGG | 0.543896 | 1_4:-71813938 | Msa0183040:CDS |
| CAATCAGAAACTGAATGGAA+TGG | 0.546705 | 1_4:+71816007 | None:intergenic |
| GATGACTGAGTTTATACTCA+AGG | 0.550664 | 1_4:-71811127 | Msa0183040:exon |
| TTGCTGCAAAAGTCATCAAG+AGG | 0.552612 | 1_4:-71811568 | Msa0183040:CDS |
| TGAAGAGTCTACATGTAGGC+AGG | 0.553342 | 1_4:-71810885 | Msa0183040:three_prime_UTR |
| GCTTCCTCGGCAGTTTCCTG+TGG | 0.555626 | 1_4:+71812823 | None:intergenic |
| CATGTAGGCAGGACATATGT+TGG | 0.556321 | 1_4:-71810874 | Msa0183040:three_prime_UTR |
| GTTATGCCTTTGTCTTGGAA+AGG | 0.557319 | 1_4:-71812321 | Msa0183040:intron |
| GAGCTTACCGAATAGAGAAT+GGG | 0.560217 | 1_4:+71816065 | None:intergenic |
| CACATTCCAAAAGCTGTGCA+AGG | 0.561951 | 1_4:-71814433 | Msa0183040:CDS |
| CCGTTGAAATATGCCTTCAA+CGG | 0.565263 | 1_4:+71810910 | None:intergenic |
| CCGTTGAAGGCATATTTCAA+CGG | 0.565319 | 1_4:-71810910 | Msa0183040:three_prime_UTR |
| GTCCACAATCATTGCTGACT+GGG | 0.565913 | 1_4:-71811424 | Msa0183040:CDS |
| CAAGTTATAGATCGTAGTGT+TGG | 0.567876 | 1_4:-71814334 | Msa0183040:CDS |
| TGAGGAAATGGGAGAGTTGG+GGG | 0.568494 | 1_4:+71816093 | None:intergenic |
| ATGAGAGAGACATGAAGGAA+AGG | 0.568976 | 1_4:-71814381 | Msa0183040:CDS |
| CCAAATTATCAACTTGCCGA+AGG | 0.569243 | 1_4:-71815552 | Msa0183040:CDS |
| TATAGGAAGATTATGTGTTG+AGG | 0.569885 | 1_4:-71815756 | Msa0183040:intron |
| TTGTATGATACGTTGAACTC+AGG | 0.573498 | 1_4:+71812521 | None:intergenic |
| AAAGCTGTGCAAGGGAATGT+GGG | 0.574699 | 1_4:-71814424 | Msa0183040:CDS |
| TTGTGATGCTGGGTGAGAAT+GGG | 0.580939 | 1_4:-71812702 | Msa0183040:CDS |
| ATCCCAGTCAGCAATGATTG+TGG | 0.583341 | 1_4:+71811422 | None:intergenic |
| TTGGATGGCAACAACCGCAA+TGG | 0.587256 | 1_4:+71814279 | None:intergenic |
| TTACTTCACTCGCATTCTAG+AGG | 0.589481 | 1_4:-71815120 | Msa0183040:CDS |
| GAGCAATGACCGAACAACTT+GGG | 0.591716 | 1_4:+71814189 | None:intergenic |
| AAAGATACCACTCATAGATA+CGG | 0.592191 | 1_4:-71815521 | Msa0183040:CDS |
| TCACAGATTATTGTGATGCT+GGG | 0.595178 | 1_4:-71812712 | Msa0183040:CDS |
| ACCCAACTAATTTCCGCCCA+AGG | 0.596535 | 1_4:-71811213 | Msa0183040:CDS |
| ATGCTGGGTGAGAATGGGAC+AGG | 0.597656 | 1_4:-71812697 | Msa0183040:CDS |
| AAAATACCTTTCCAAGACAA+AGG | 0.600861 | 1_4:+71812315 | None:intergenic |
| GAGGTTCAGAATCTTTCTGG+TGG | 0.606749 | 1_4:-71812362 | Msa0183040:CDS |
| ATCAACTGTTCAATAAGTAG+TGG | 0.606997 | 1_4:+71812392 | None:intergenic |
| CAAGTTTGTTGATCCTTGGG+CGG | 0.607651 | 1_4:+71811200 | None:intergenic |
| CGTCGCAGTTGTCAACATGT+CGG | 0.610369 | 1_4:-71815953 | Msa0183040:exon |
| CTAGGTTGCAGAGACTCCAC+AGG | 0.612709 | 1_4:-71812839 | Msa0183040:intron |
| GCATCTGTCGTTGCTAACGA+TGG | 0.618479 | 1_4:+71815912 | None:intergenic |
| GAAGATTGCTTACATATCTG+AGG | 0.618924 | 1_4:-71815720 | Msa0183040:CDS |
| TGAACAGTTGATGGACCAAG+AGG | 0.621724 | 1_4:-71812381 | Msa0183040:CDS |
| TAGTGTTGGTGATCTTTCAG+GGG | 0.624775 | 1_4:-71814320 | Msa0183040:CDS |
| TCGGAATCAAGATATGCACT+TGG | 0.628638 | 1_4:+71811602 | None:intergenic |
| GATAGAGTTATTGTTTACGA+GGG | 0.628816 | 1_4:-71811476 | Msa0183040:CDS |
| GGAATGTGGTCAACATACTG+AGG | 0.630705 | 1_4:+71814448 | None:intergenic |
| AAACCTGACACTATAGAAGG+TGG | 0.635558 | 1_4:-71812560 | Msa0183040:CDS |
| AAAATTTCCTGCCAATCAGG+CGG | 0.635955 | 1_4:+71815173 | None:intergenic |
| CAACAAACTTGAATCAACAA+AGG | 0.636970 | 1_4:-71811188 | Msa0183040:CDS |
| TGATAGAGTTATTGTTTACG+AGG | 0.637216 | 1_4:-71811477 | Msa0183040:CDS |
| AGAAAATCTTAGGTTTCGGG+AGG | 0.637470 | 1_4:-71813882 | Msa0183040:CDS |
| ACATTCCAAAAGCTGTGCAA+GGG | 0.637987 | 1_4:-71814432 | Msa0183040:CDS |
| AAGCTGTGCAAGGGAATGTG+GGG | 0.647412 | 1_4:-71814423 | Msa0183040:CDS |
| ATCACATCTGATATAAACTG+GGG | 0.648487 | 1_4:+71812419 | None:intergenic |
| GTTACAACACCATATGCACC+AGG | 0.652585 | 1_4:+71813962 | None:intergenic |
| TTCACATCCAGATAACTGGA+AGG | 0.653511 | 1_4:+71814229 | None:intergenic |
| GAGGAATTGTGTATTGGATG+CGG | 0.654426 | 1_4:-71815701 | Msa0183040:CDS |
| CCAACCATGACCAAAACTCA+AGG | 0.657607 | 1_4:-71812775 | Msa0183040:CDS |
| GACTCCACAGGAAACTGCCG+AGG | 0.659331 | 1_4:-71812827 | Msa0183040:CDS |
| AGTGTTGGTGATCTTTCAGG+GGG | 0.661626 | 1_4:-71814319 | Msa0183040:CDS |
| ATTAGGACCGTATCTATGAG+TGG | 0.664710 | 1_4:+71815514 | None:intergenic |
| GGATTGAAGAGTCTACATGT+AGG | 0.687888 | 1_4:-71810889 | Msa0183040:three_prime_UTR |
| GTTATCTGGATGTGAAACAG+AGG | 0.693943 | 1_4:-71814222 | Msa0183040:CDS |
| TCACATCTGATATAAACTGG+GGG | 0.704498 | 1_4:+71812420 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAATTTAATTTAATTAT+AGG | - | chr1_4:71811170-71811189 | Msa0183040:CDS | 0.0% |
| !!! | TAATTTAATATTTATTTTAA+CGG | + | chr1_4:71813685-71813704 | None:intergenic | 0.0% |
| !! | AAAAAATTAACCAAAATATA+AGG | + | chr1_4:71813718-71813737 | None:intergenic | 10.0% |
| !!! | ATTAGAATATTTTTATTTCA+AGG | + | chr1_4:71813982-71814001 | None:intergenic | 10.0% |
| !! | TATTCTAATAAATTAGATAT+TGG | - | chr1_4:71813993-71814012 | Msa0183040:CDS | 10.0% |
| !! | AAAATGAAATCTGAAAAAAA+GGG | + | chr1_4:71811128-71811147 | None:intergenic | 15.0% |
| !! | TTCTTATATTCTATATTAGA+AGG | + | chr1_4:71811931-71811950 | None:intergenic | 15.0% |
| !! | ATGTCTTAAATTAAATCTTT+GGG | + | chr1_4:71812178-71812197 | None:intergenic | 15.0% |
| !! | AATGTCTTAAATTAAATCTT+TGG | + | chr1_4:71812179-71812198 | None:intergenic | 15.0% |
| !! | AAATCATATATAAATAGTGA+TGG | + | chr1_4:71812207-71812226 | None:intergenic | 15.0% |
| !!! | AATTTTAAAAAATGAAGGTA+CGG | - | chr1_4:71813291-71813310 | Msa0183040:intron | 15.0% |
| !! | TAACCAAATAAAAATAGATA+TGG | - | chr1_4:71813494-71813513 | Msa0183040:intron | 15.0% |
| !! | AAATAAAAATAGATATGGTT+CGG | - | chr1_4:71813499-71813518 | Msa0183040:intron | 15.0% |
| !!! | TATTTTTAGTCCTTATATTT+TGG | - | chr1_4:71813705-71813724 | Msa0183040:intron | 15.0% |
| !! | TCAAAAAAAAAAAAATCTCA+AGG | + | chr1_4:71814663-71814682 | None:intergenic | 15.0% |
| !!! | TTGAGATTTTTTTTTTTTTG+AGG | - | chr1_4:71814662-71814681 | Msa0183040:intron | 15.0% |
| !!! | TGAGATTTTTTTTTTTTTGA+GGG | - | chr1_4:71814663-71814682 | Msa0183040:intron | 15.0% |
| !! | GAAATAAAATGTATACATTT+AGG | + | chr1_4:71815088-71815107 | None:intergenic | 15.0% |
| !! | TCTTTCTGTTTAAAAAATTT+AGG | - | chr1_4:71815594-71815613 | Msa0183040:intron | 15.0% |
| !! | CTTTCTGTTTAAAAAATTTA+GGG | - | chr1_4:71815595-71815614 | Msa0183040:intron | 15.0% |
| !! | ATTAATACTTGGATTTATAT+CGG | - | chr1_4:71816194-71816213 | Msa0183040:five_prime_UTR | 15.0% |
| !! | GAAAATGAAATCTGAAAAAA+AGG | + | chr1_4:71811129-71811148 | None:intergenic | 20.0% |
| !! | ATATCTTTGAGTGTTAATAA+TGG | - | chr1_4:71811321-71811340 | Msa0183040:intron | 20.0% |
| !! | TATCTTTGAGTGTTAATAAT+GGG | - | chr1_4:71811322-71811341 | Msa0183040:intron | 20.0% |
| !! | GTAATTGTAATTATAATTGC+AGG | - | chr1_4:71811536-71811555 | Msa0183040:CDS | 20.0% |
| !!! | AACTAAAAAAAGGCTAATTT+TGG | + | chr1_4:71811686-71811705 | None:intergenic | 20.0% |
| !! | ACAATACAAATTTCAAAAAC+AGG | + | chr1_4:71812372-71812391 | None:intergenic | 20.0% |
| !! | ATTGAAATAAACATGATTAG+AGG | + | chr1_4:71812447-71812466 | None:intergenic | 20.0% |
| !! | TTCAATATACGTTATAATAC+AGG | - | chr1_4:71812461-71812480 | Msa0183040:CDS | 20.0% |
| !! | AATATAAATGCAATTTGAGT+TGG | - | chr1_4:71813137-71813156 | Msa0183040:intron | 20.0% |
| !!! | ATATAAATGCAATTTGAGTT+GGG | - | chr1_4:71813138-71813157 | Msa0183040:intron | 20.0% |
| !!! | CGTCAAATTTTAAAAAATGA+AGG | - | chr1_4:71813286-71813305 | Msa0183040:intron | 20.0% |
| !!! | ATTTTAAAAAATGAAGGTAC+GGG | - | chr1_4:71813292-71813311 | Msa0183040:intron | 20.0% |
| !!! | GAACCATATCTATTTTTATT+TGG | + | chr1_4:71813500-71813519 | None:intergenic | 20.0% |
| !! | ATCAAAACTATAGTGATTAT+GGG | + | chr1_4:71813756-71813775 | None:intergenic | 20.0% |
| !! | AATCAAAACTATAGTGATTA+TGG | + | chr1_4:71813757-71813776 | None:intergenic | 20.0% |
| !! | ATTAATGAATCATGAATGTA+AGG | - | chr1_4:71813848-71813867 | Msa0183040:intron | 20.0% |
| !! | AAAGAATGAACATAAAATGA+AGG | + | chr1_4:71813954-71813973 | None:intergenic | 20.0% |
| !!! | GAGATTTTTTTTTTTTTGAG+GGG | - | chr1_4:71814664-71814683 | Msa0183040:intron | 20.0% |
| !!! | AGATTTTTTTTTTTTTGAGG+GGG | - | chr1_4:71814665-71814684 | Msa0183040:intron | 20.0% |
| !!! | CATTTTTTTTTTGTTGTTGA+GGG | - | chr1_4:71816134-71816153 | Msa0183040:five_prime_UTR | 20.0% |
| !!! | ATTTTTTTTTTGTTGTTGAG+GGG | - | chr1_4:71816135-71816154 | Msa0183040:five_prime_UTR | 20.0% |
| !! | TTTAGGGTTTGATATTTAGA+CGG | + | chr1_4:71810795-71810814 | None:intergenic | 25.0% |
| ! | AATTACAATCAGAAACTGAA+TGG | + | chr1_4:71810944-71810963 | None:intergenic | 25.0% |
| ! | TTCAGTTTCTGATTGTAATT+TGG | - | chr1_4:71810944-71810963 | Msa0183040:three_prime_UTR | 25.0% |
| ! | TCAGTTTCTGATTGTAATTT+GGG | - | chr1_4:71810945-71810964 | Msa0183040:three_prime_UTR | 25.0% |
| ! | ATAATTTGGATAGCTTCAAA+AGG | + | chr1_4:71811380-71811399 | None:intergenic | 25.0% |
| !!! | AATTAGCCTTTTTTTAGTTG+TGG | - | chr1_4:71811687-71811706 | Msa0183040:intron | 25.0% |
| !!! | TTATTTTTCTTTCCATTTGC+AGG | - | chr1_4:71811745-71811764 | Msa0183040:intron | 25.0% |
| ! | ATTGCTAACGATATTGAATA+AGG | + | chr1_4:71811873-71811892 | None:intergenic | 25.0% |
| ! | TGCTATATAAAAACTACACA+TGG | + | chr1_4:71812111-71812130 | None:intergenic | 25.0% |
| !! | TGTGTAGTTTTTATATAGCA+TGG | - | chr1_4:71812111-71812130 | Msa0183040:intron | 25.0% |
| !! | GTGTAGTTTTTATATAGCAT+GGG | - | chr1_4:71812112-71812131 | Msa0183040:intron | 25.0% |
| ! | AGGAAATTAACAAACCTATT+AGG | + | chr1_4:71812783-71812802 | None:intergenic | 25.0% |
| ! | ATATAAAGCAGAAACTAAAG+AGG | + | chr1_4:71812803-71812822 | None:intergenic | 25.0% |
| ! | ACATAGCTGAAAAAATAAAG+AGG | + | chr1_4:71812891-71812910 | None:intergenic | 25.0% |
| !!! | GACTTTATTTGCTGTTTATA+TGG | - | chr1_4:71812954-71812973 | Msa0183040:intron | 25.0% |
| ! | ATGGTGTTTGTGAATATATT+TGG | - | chr1_4:71813193-71813212 | Msa0183040:intron | 25.0% |
| !! | TTTTGATGAAAATAGTAGAG+GGG | + | chr1_4:71813411-71813430 | None:intergenic | 25.0% |
| !! | CTTTTGATGAAAATAGTAGA+GGG | + | chr1_4:71813412-71813431 | None:intergenic | 25.0% |
| !! | CATCAAAAGCAAGATAATTT+TGG | - | chr1_4:71813423-71813442 | Msa0183040:intron | 25.0% |
| ! | ATGATGTGTTTGTTTAAATG+GGG | + | chr1_4:71813621-71813640 | None:intergenic | 25.0% |
| ! | GATGATGTGTTTGTTTAAAT+GGG | + | chr1_4:71813622-71813641 | None:intergenic | 25.0% |
| !! | TGATGATGTGTTTGTTTAAA+TGG | + | chr1_4:71813623-71813642 | None:intergenic | 25.0% |
| !!! | TTCATTACGTTTTGAATAAG+TGG | + | chr1_4:71813904-71813923 | None:intergenic | 25.0% |
| ! | AATGTATTCAAGAATGTAGA+CGG | + | chr1_4:71814745-71814764 | None:intergenic | 25.0% |
| !!! | TAAACATGTGTTGATTTTCT+TGG | - | chr1_4:71815026-71815045 | Msa0183040:intron | 25.0% |
| !!! | TAAGTGTCATTGTTTTTCAA+TGG | - | chr1_4:71815561-71815580 | Msa0183040:CDS | 25.0% |
| ! | CCTCAACAACAAAAAAAAAA+TGG | + | chr1_4:71816136-71816155 | None:intergenic | 25.0% |
| !!! | CCATTTTTTTTTTGTTGTTG+AGG | - | chr1_4:71816133-71816152 | Msa0183040:five_prime_UTR | 25.0% |
| ! | TTAGGGTTGTTCTTTTTAGA+GGG | + | chr1_4:71810829-71810848 | None:intergenic | 30.0% |
| ! | ATTAGGGTTGTTCTTTTTAG+AGG | + | chr1_4:71810830-71810849 | None:intergenic | 30.0% |
| ATGGAATCGAATTGAATTGA+GGG | + | chr1_4:71810920-71810939 | None:intergenic | 30.0% | |
| AATGGAATCGAATTGAATTG+AGG | + | chr1_4:71810921-71810940 | None:intergenic | 30.0% | |
| ! | CTGATTGTAATTTGGGATTT+AGG | - | chr1_4:71810952-71810971 | Msa0183040:intron | 30.0% |
| TATAGGAAGATTATGTGTTG+AGG | - | chr1_4:71811187-71811206 | Msa0183040:CDS | 30.0% | |
| ATATCTGAGGAATTGTGTAT+TGG | - | chr1_4:71811236-71811255 | Msa0183040:CDS | 30.0% | |
| AAAGATACCACTCATAGATA+CGG | - | chr1_4:71811422-71811441 | Msa0183040:CDS | 30.0% | |
| !! | CTGTGTAGCTTAAAAGTATT+AGG | + | chr1_4:71811449-71811468 | None:intergenic | 30.0% |
| ! | CTAATACTTTTAAGCTACAC+AGG | - | chr1_4:71811447-71811466 | Msa0183040:CDS | 30.0% |
| TAATTATAATTGCAGGTTGC+CGG | - | chr1_4:71811543-71811562 | Msa0183040:CDS | 30.0% | |
| GTCTATCCACAACTAAAAAA+AGG | + | chr1_4:71811696-71811715 | None:intergenic | 30.0% | |
| !! | ATTGTTTGAAAGCGTTATGT+TGG | - | chr1_4:71811950-71811969 | Msa0183040:intron | 30.0% |
| !!! | ACCTTTTACTTTTAAAGCGA+AGG | + | chr1_4:71812141-71812160 | None:intergenic | 30.0% |
| TAATGTTAGACTGTTGTGTT+GGG | + | chr1_4:71812301-71812320 | None:intergenic | 30.0% | |
| TTAATGTTAGACTGTTGTGT+TGG | + | chr1_4:71812302-71812321 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTGCCTTTTCCTTC+TGG | - | chr1_4:71812421-71812440 | Msa0183040:CDS | 30.0% |
| !!! | TCATGTCTCTCTCATTTTTT+TGG | + | chr1_4:71812557-71812576 | None:intergenic | 30.0% |
| AAAAAATGAGAGAGACATGA+AGG | - | chr1_4:71812557-71812576 | Msa0183040:CDS | 30.0% | |
| ! | ACATGTATATCTCAGCATTT+TGG | + | chr1_4:71812686-71812705 | None:intergenic | 30.0% |
| !!! | GAACTGTCATTGATTTTTGT+CGG | - | chr1_4:71812840-71812859 | Msa0183040:intron | 30.0% |
| !!! | AACTGTCATTGATTTTTGTC+GGG | - | chr1_4:71812841-71812860 | Msa0183040:intron | 30.0% |
| GGAATTAATATCTTCTTGTC+CGG | - | chr1_4:71813026-71813045 | Msa0183040:intron | 30.0% | |
| TTGTTCCAACAGAAAATCTT+AGG | - | chr1_4:71813051-71813070 | Msa0183040:intron | 30.0% | |
| CAACAGAAAATCTTAGGTTT+CGG | - | chr1_4:71813057-71813076 | Msa0183040:intron | 30.0% | |
| AACAGAAAATCTTAGGTTTC+GGG | - | chr1_4:71813058-71813077 | Msa0183040:intron | 30.0% | |
| TATCTCCTACATCTCATTTA+CGG | - | chr1_4:71813113-71813132 | Msa0183040:intron | 30.0% | |
| TATTTCCGTAAATGAGATGT+AGG | + | chr1_4:71813121-71813140 | None:intergenic | 30.0% | |
| TCTGAATATCTATGATGCAT+AGG | - | chr1_4:71813218-71813237 | Msa0183040:intron | 30.0% | |
| AAATTTGACGTATTACGTAC+AGG | + | chr1_4:71813276-71813295 | None:intergenic | 30.0% | |
| ! | GCTTTTGATGAAAATAGTAG+AGG | + | chr1_4:71813413-71813432 | None:intergenic | 30.0% |
| !! | TATATTCAGCTTTGAAGCAT+GGG | + | chr1_4:71813584-71813603 | None:intergenic | 30.0% |
| !! | ATATATTCAGCTTTGAAGCA+TGG | + | chr1_4:71813585-71813604 | None:intergenic | 30.0% |
| TGATGTGTTTGTTTAAATGG+GGG | + | chr1_4:71813620-71813639 | None:intergenic | 30.0% | |
| TAAAAGCTTAGATGATGTTC+AGG | - | chr1_4:71813792-71813811 | Msa0183040:intron | 30.0% | |
| AATGAATCATGAATGTAAGG+CGG | - | chr1_4:71813851-71813870 | Msa0183040:intron | 30.0% | |
| TAACAGATAATTGGGACTTT+GGG | + | chr1_4:71814463-71814482 | None:intergenic | 30.0% | |
| CAAGTGTCTAACAGATAATT+GGG | + | chr1_4:71814471-71814490 | None:intergenic | 30.0% | |
| ATCACATCTGATATAAACTG+GGG | + | chr1_4:71814527-71814546 | None:intergenic | 30.0% | |
| CATCACATCTGATATAAACT+GGG | + | chr1_4:71814528-71814547 | None:intergenic | 30.0% | |
| TCATCACATCTGATATAAAC+TGG | + | chr1_4:71814529-71814548 | None:intergenic | 30.0% | |
| ATCAACTGTTCAATAAGTAG+TGG | + | chr1_4:71814554-71814573 | None:intergenic | 30.0% | |
| ACTACTTATTGAACAGTTGA+TGG | - | chr1_4:71814553-71814572 | Msa0183040:intron | 30.0% | |
| AAAATACCTTTCCAAGACAA+AGG | + | chr1_4:71814631-71814650 | None:intergenic | 30.0% | |
| ATGTATTCAAGAATGTAGAC+GGG | + | chr1_4:71814744-71814763 | None:intergenic | 30.0% | |
| CAGAGTGATTTACTTTAGAT+TGG | - | chr1_4:71814801-71814820 | Msa0183040:intron | 30.0% | |
| !!! | TGTTGATTTTCTTGGAAACT+TGG | - | chr1_4:71815034-71815053 | Msa0183040:intron | 30.0% |
| TTGCTATAGTAGAACAGTAA+TGG | + | chr1_4:71815138-71815157 | None:intergenic | 30.0% | |
| TGATAGAGTTATTGTTTACG+AGG | - | chr1_4:71815466-71815485 | Msa0183040:intron | 30.0% | |
| GATAGAGTTATTGTTTACGA+GGG | - | chr1_4:71815467-71815486 | Msa0183040:intron | 30.0% | |
| TGACACTTACAGATAAGAAA+AGG | + | chr1_4:71815550-71815569 | None:intergenic | 30.0% | |
| AAAAATTATGTTGTGCTCTC+TGG | - | chr1_4:71815638-71815657 | Msa0183040:intron | 30.0% | |
| !! | ATTCAAGTTTGTTGATCCTT+GGG | + | chr1_4:71815749-71815768 | None:intergenic | 30.0% |
| CAACAAACTTGAATCAACAA+AGG | - | chr1_4:71815755-71815774 | Msa0183040:intron | 30.0% | |
| CAGACTGCAACAAAATAAAA+CGG | + | chr1_4:71815921-71815940 | None:intergenic | 30.0% | |
| !!! | CAGTTTTGTTATGCTTTGAT+GGG | - | chr1_4:71816163-71816182 | Msa0183040:five_prime_UTR | 30.0% |
| !! | TTCTTTTTAGAGGGATGGAA+AGG | + | chr1_4:71810820-71810839 | None:intergenic | 35.0% |
| CAATCAGAAACTGAATGGAA+TGG | + | chr1_4:71810939-71810958 | None:intergenic | 35.0% | |
| !! | CATTCTTGACGACACTTTTT+GGG | + | chr1_4:71811060-71811079 | None:intergenic | 35.0% |
| ! | ACATTCTTGACGACACTTTT+TGG | + | chr1_4:71811061-71811080 | None:intergenic | 35.0% |
| GAAGATTGCTTACATATCTG+AGG | - | chr1_4:71811223-71811242 | Msa0183040:CDS | 35.0% | |
| GTATCTTTGTCCAAATCCTT+CGG | + | chr1_4:71811410-71811429 | None:intergenic | 35.0% | |
| TTGTGGATAGACATGATTTG+AGG | - | chr1_4:71811704-71811723 | Msa0183040:intron | 35.0% | |
| !! | GAAATTTTGACCCATTTTCG+AGG | - | chr1_4:71811785-71811804 | Msa0183040:intron | 35.0% |
| CAATTCAGATCCTCGAAAAT+GGG | + | chr1_4:71811798-71811817 | None:intergenic | 35.0% | |
| ! | CATTCTAGAGGATGATTTGA+AGG | - | chr1_4:71811835-71811854 | Msa0183040:intron | 35.0% |
| TCCAACACATTCATTGTGTT+GGG | - | chr1_4:71812043-71812062 | Msa0183040:intron | 35.0% | |
| !! | GCCTTCGCTTTAAAAGTAAA+AGG | - | chr1_4:71812137-71812156 | Msa0183040:intron | 35.0% |
| GCTACGTTTAATTCTAGTGA+AGG | + | chr1_4:71812247-71812266 | None:intergenic | 35.0% | |
| CAAGTTATAGATCGTAGTGT+TGG | - | chr1_4:71812609-71812628 | Msa0183040:intron | 35.0% | |
| ! | GTATATCTCAGCATTTTGGA+TGG | + | chr1_4:71812682-71812701 | None:intergenic | 35.0% |
| ! | ATTTTCTGTTGGAACAAAGC+CGG | + | chr1_4:71813048-71813067 | None:intergenic | 35.0% |
| ! | CGAAACCTAAGATTTTCTGT+TGG | + | chr1_4:71813059-71813078 | None:intergenic | 35.0% |
| CAACACTGAGATTGATTGAA+TGG | - | chr1_4:71813174-71813193 | Msa0183040:intron | 35.0% | |
| TATCTATGATGCATAGGTAC+CGG | - | chr1_4:71813224-71813243 | Msa0183040:intron | 35.0% | |
| ATGAATCATGAATGTAAGGC+GGG | - | chr1_4:71813852-71813871 | Msa0183040:intron | 35.0% | |
| TTCACAGATTATTGTGATGC+TGG | - | chr1_4:71814230-71814249 | Msa0183040:CDS | 35.0% | |
| TCACAGATTATTGTGATGCT+GGG | - | chr1_4:71814231-71814250 | Msa0183040:CDS | 35.0% | |
| ! | TTCACCTTCTCCTTTTATTC+AGG | - | chr1_4:71814349-71814368 | Msa0183040:CDS | 35.0% |
| TTGAAACCTGACACTATAGA+AGG | - | chr1_4:71814380-71814399 | Msa0183040:CDS | 35.0% | |
| TTGTATGATACGTTGAACTC+AGG | + | chr1_4:71814425-71814444 | None:intergenic | 35.0% | |
| CTAACAGATAATTGGGACTT+TGG | + | chr1_4:71814464-71814483 | None:intergenic | 35.0% | |
| GCAAGTGTCTAACAGATAAT+TGG | + | chr1_4:71814472-71814491 | None:intergenic | 35.0% | |
| TCACATCTGATATAAACTGG+GGG | + | chr1_4:71814526-71814545 | None:intergenic | 35.0% | |
| ! | ACTGCTGTTTATTTCCTCTA+TGG | - | chr1_4:71814898-71814917 | Msa0183040:intron | 35.0% |
| CATCACAAATAGATGTCTAC+AGG | + | chr1_4:71815161-71815180 | None:intergenic | 35.0% | |
| AAACACACAACAAAGCTAAG+TGG | + | chr1_4:71815212-71815231 | None:intergenic | 35.0% | |
| TTTGCAGTACAGTCAATTGA+AGG | + | chr1_4:71815497-71815516 | None:intergenic | 35.0% | |
| !! | GATTCAAGTTTGTTGATCCT+TGG | + | chr1_4:71815750-71815769 | None:intergenic | 35.0% |
| GAGTATAAACTCAGTCATCT+AGG | + | chr1_4:71815815-71815834 | None:intergenic | 35.0% | |
| GATGACTGAGTTTATACTCA+AGG | - | chr1_4:71815816-71815835 | Msa0183040:intron | 35.0% | |
| TCAATTAAAGCTGAGATTCG+AGG | + | chr1_4:71815980-71815999 | None:intergenic | 35.0% | |
| ! | AAAGACCAACTTTTATGGCA+AGG | + | chr1_4:71816010-71816029 | None:intergenic | 35.0% |
| ! | GGGAAAAAGACCAACTTTTA+TGG | + | chr1_4:71816015-71816034 | None:intergenic | 35.0% |
| CCATCAAAGCATAACAAAAC+TGG | + | chr1_4:71816165-71816184 | None:intergenic | 35.0% | |
| !!! | CCAGTTTTGTTATGCTTTGA+TGG | - | chr1_4:71816162-71816181 | Msa0183040:five_prime_UTR | 35.0% |
| GGGTGAATCTGATTAATACT+TGG | - | chr1_4:71816183-71816202 | Msa0183040:five_prime_UTR | 35.0% | |
| GAGGGATGGAAAGGAATTTA+GGG | + | chr1_4:71810811-71810830 | None:intergenic | 40.0% | |
| AGAGGGATGGAAAGGAATTT+AGG | + | chr1_4:71810812-71810831 | None:intergenic | 40.0% | |
| !! | GGTTGTTCTTTTTAGAGGGA+TGG | + | chr1_4:71810825-71810844 | None:intergenic | 40.0% |
| TTTGAGGAAATGGGAGAGTT+GGG | + | chr1_4:71810855-71810874 | None:intergenic | 40.0% | |
| AATGGGTCGTTTGAGGAAAT+GGG | + | chr1_4:71810864-71810883 | None:intergenic | 40.0% | |
| AATAGAGAATGGGTCGTTTG+AGG | + | chr1_4:71810871-71810890 | None:intergenic | 40.0% | |
| CAAACGACCCATTCTCTATT+CGG | - | chr1_4:71810871-71810890 | Msa0183040:three_prime_UTR | 40.0% | |
| GAGCTTACCGAATAGAGAAT+GGG | + | chr1_4:71810881-71810900 | None:intergenic | 40.0% | |
| AGAGCTTACCGAATAGAGAA+TGG | + | chr1_4:71810882-71810901 | None:intergenic | 40.0% | |
| AGAACCGGTAAGTAACATCA+CGG | - | chr1_4:71811102-71811121 | Msa0183040:intron | 40.0% | |
| GAGGAATTGTGTATTGGATG+CGG | - | chr1_4:71811242-71811261 | Msa0183040:intron | 40.0% | |
| !! | CCTTCGGCAAGTTGATAATT+TGG | + | chr1_4:71811394-71811413 | None:intergenic | 40.0% |
| CCAAATTATCAACTTGCCGA+AGG | - | chr1_4:71811391-71811410 | Msa0183040:intron | 40.0% | |
| TATCAACTTGCCGAAGGATT+TGG | - | chr1_4:71811397-71811416 | Msa0183040:intron | 40.0% | |
| ATTAGGACCGTATCTATGAG+TGG | + | chr1_4:71811432-71811451 | None:intergenic | 40.0% | |
| TTGGTTGGGACAAATGGAAT+TGG | - | chr1_4:71811592-71811611 | Msa0183040:CDS | 40.0% | |
| TGGTTGGGACAAATGGAATT+GGG | - | chr1_4:71811593-71811612 | Msa0183040:CDS | 40.0% | |
| TGGAAAATTGAAGCCCAACT+TGG | - | chr1_4:71811642-71811661 | Msa0183040:intron | 40.0% | |
| GGAAAATTGAAGCCCAACTT+GGG | - | chr1_4:71811643-71811662 | Msa0183040:intron | 40.0% | |
| AAAATTTCCTGCCAATCAGG+CGG | + | chr1_4:71811773-71811792 | None:intergenic | 40.0% | |
| GTCAAAATTTCCTGCCAATC+AGG | + | chr1_4:71811776-71811795 | None:intergenic | 40.0% | |
| GCAATTCAGATCCTCGAAAA+TGG | + | chr1_4:71811799-71811818 | None:intergenic | 40.0% | |
| TTACTTCACTCGCATTCTAG+AGG | - | chr1_4:71811823-71811842 | Msa0183040:intron | 40.0% | |
| CAACACAATGAATGTGTTGG+AGG | + | chr1_4:71812044-71812063 | None:intergenic | 40.0% | |
| CTCCAACACATTCATTGTGT+TGG | - | chr1_4:71812042-71812061 | Msa0183040:intron | 40.0% | |
| ACCCAACACAATGAATGTGT+TGG | + | chr1_4:71812047-71812066 | None:intergenic | 40.0% | |
| TTCATTGTGTTGGGTGTGAA+AGG | - | chr1_4:71812052-71812071 | Msa0183040:intron | 40.0% | |
| TCATTGTGTTGGGTGTGAAA+GGG | - | chr1_4:71812053-71812072 | Msa0183040:intron | 40.0% | |
| ACTACACATGGCATATCTCT+AGG | + | chr1_4:71812099-71812118 | None:intergenic | 40.0% | |
| AAACATGATTAGAGGCCAGA+AGG | + | chr1_4:71812439-71812458 | None:intergenic | 40.0% | |
| ACATTCCAAAAGCTGTGCAA+GGG | - | chr1_4:71812511-71812530 | Msa0183040:CDS | 40.0% | |
| ATGAGAGAGACATGAAGGAA+AGG | - | chr1_4:71812562-71812581 | Msa0183040:CDS | 40.0% | |
| !! | GTAGTGTTGGTGATCTTTCA+GGG | - | chr1_4:71812622-71812641 | Msa0183040:intron | 40.0% |
| !! | TAGTGTTGGTGATCTTTCAG+GGG | - | chr1_4:71812623-71812642 | Msa0183040:intron | 40.0% |
| TGATGAACCTTCCAGTTATC+TGG | - | chr1_4:71812707-71812726 | Msa0183040:CDS | 40.0% | |
| TTCACATCCAGATAACTGGA+AGG | + | chr1_4:71812717-71812736 | None:intergenic | 40.0% | |
| CTGTTTCACATCCAGATAAC+TGG | + | chr1_4:71812721-71812740 | None:intergenic | 40.0% | |
| GTTATCTGGATGTGAAACAG+AGG | - | chr1_4:71812721-71812740 | Msa0183040:CDS | 40.0% | |
| ! | TGCTGTTTATATGGCAAACC+TGG | - | chr1_4:71812963-71812982 | Msa0183040:intron | 40.0% |
| ATTCCTTCTCTGACTGAGAA+AGG | + | chr1_4:71813011-71813030 | None:intergenic | 40.0% | |
| AGAAAATCTTAGGTTTCGGG+AGG | - | chr1_4:71813061-71813080 | Msa0183040:intron | 40.0% | |
| GGAGGTTTCTCTTACTTTCA+AGG | - | chr1_4:71813079-71813098 | Msa0183040:intron | 40.0% | |
| TTTGGTTATTGCGTCGTAGT+TGG | + | chr1_4:71813482-71813501 | None:intergenic | 40.0% | |
| CTAGATACAACATCAGAGCA+AGG | + | chr1_4:71814088-71814107 | None:intergenic | 40.0% | |
| CTTGCTCTGATGTTGTATCT+AGG | - | chr1_4:71814086-71814105 | Msa0183040:intron | 40.0% | |
| AGCATAAGTTTGAGCTTCCT+CGG | + | chr1_4:71814136-71814155 | None:intergenic | 40.0% | |
| !! | CTTGAGTTTTGGTCATGGTT+GGG | + | chr1_4:71814170-71814189 | None:intergenic | 40.0% |
| !! | ATTGCCTTGAGTTTTGGTCA+TGG | + | chr1_4:71814175-71814194 | None:intergenic | 40.0% |
| ! | CCTGAAATTGCCTTGAGTTT+TGG | + | chr1_4:71814181-71814200 | None:intergenic | 40.0% |
| CCAAAACTCAAGGCAATTTC+AGG | - | chr1_4:71814178-71814197 | Msa0183040:CDS | 40.0% | |
| TTCAGGCTTCATGTAGTTGA+AGG | - | chr1_4:71814195-71814214 | Msa0183040:CDS | 40.0% | |
| GAATACCAGCATACGAATGA+AGG | + | chr1_4:71814280-71814299 | None:intergenic | 40.0% | |
| AACAAACCGGCCTGAATAAA+AGG | + | chr1_4:71814362-71814381 | None:intergenic | 40.0% | |
| AGTGTCAGGTTTCAACAAAC+CGG | + | chr1_4:71814375-71814394 | None:intergenic | 40.0% | |
| AAACCTGACACTATAGAAGG+TGG | - | chr1_4:71814383-71814402 | Msa0183040:CDS | 40.0% | |
| ! | GACTTTGGGCTAATTTTCTG+AGG | + | chr1_4:71814449-71814468 | None:intergenic | 40.0% |
| CAGAAAGATTCTGAACCTCT+TGG | + | chr1_4:71814580-71814599 | None:intergenic | 40.0% | |
| CAAGAGGTTCAGAATCTTTC+TGG | - | chr1_4:71814578-71814597 | Msa0183040:intron | 40.0% | |
| GTTATGCCTTTGTCTTGGAA+AGG | - | chr1_4:71814622-71814641 | Msa0183040:intron | 40.0% | |
| AAGGTGCACAAGTAATCTCA+AGG | + | chr1_4:71814692-71814711 | None:intergenic | 40.0% | |
| TAGACGGGAAAGAAAAGACA+GGG | + | chr1_4:71814729-71814748 | None:intergenic | 40.0% | |
| CTGAAAGAGCTAAATTACGC+TGG | + | chr1_4:71814784-71814803 | None:intergenic | 40.0% | |
| ATCTCAAGTCTCAACCATAG+AGG | + | chr1_4:71814915-71814934 | None:intergenic | 40.0% | |
| ! | AGATTTGGCTTCTCTAGTGT+GGG | + | chr1_4:71814947-71814966 | None:intergenic | 40.0% |
| TAGAGAAGCCAAATCTGTGT+TGG | - | chr1_4:71814951-71814970 | Msa0183040:intron | 40.0% | |
| !! | CAAATCTGTGTTGGTGATGT+CGG | - | chr1_4:71814960-71814979 | Msa0183040:intron | 40.0% |
| ! | TGACGTTGAAGCAAGCTTTT+TGG | - | chr1_4:71815179-71815198 | Msa0183040:CDS | 40.0% |
| TCTATCAGATAGATGTCTGC+AGG | + | chr1_4:71815317-71815336 | None:intergenic | 40.0% | |
| TCGGAATCAAGATATGCACT+TGG | + | chr1_4:71815344-71815363 | None:intergenic | 40.0% | |
| TTGCTGCAAAAGTCATCAAG+AGG | - | chr1_4:71815375-71815394 | Msa0183040:CDS | 40.0% | |
| GAAATCGTGCTCAACGATAA+AGG | + | chr1_4:71815426-71815445 | None:intergenic | 40.0% | |
| AATTATGTTGTGCTCTCTGG+TGG | - | chr1_4:71815641-71815660 | Msa0183040:intron | 40.0% | |
| TTTGCATTTGCCATTGCTCT+TGG | - | chr1_4:71815858-71815877 | Msa0183040:CDS | 40.0% | |
| !!! | AGGTTTTGTTCCAAGAGCAA+TGG | + | chr1_4:71815871-71815890 | None:intergenic | 40.0% |
| TTTCAGTTGCAGTGAAAGGT+AGG | + | chr1_4:71815891-71815910 | None:intergenic | 40.0% | |
| ! | CAGTTTTCAGTTGCAGTGAA+AGG | + | chr1_4:71815895-71815914 | None:intergenic | 40.0% |
| GCTCAATTTGATGCACTGTT+TGG | + | chr1_4:71815952-71815971 | None:intergenic | 40.0% | |
| AAAGCTGAGATTCGAGGAAA+AGG | + | chr1_4:71815974-71815993 | None:intergenic | 40.0% | |
| TGATGCCTTGCCATAAAAGT+TGG | - | chr1_4:71816002-71816021 | Msa0183040:five_prime_UTR | 40.0% | |
| CGTTGAAATATGCCTTCAAC+GGG | + | chr1_4:71816035-71816054 | None:intergenic | 40.0% | |
| CCGTTGAAATATGCCTTCAA+CGG | + | chr1_4:71816036-71816055 | None:intergenic | 40.0% | |
| ! | CCGTTGAAGGCATATTTCAA+CGG | - | chr1_4:71816033-71816052 | Msa0183040:five_prime_UTR | 40.0% |
| GGATTGAAGAGTCTACATGT+AGG | - | chr1_4:71816054-71816073 | Msa0183040:five_prime_UTR | 40.0% | |
| TTGAGGAAATGGGAGAGTTG+GGG | + | chr1_4:71810854-71810873 | None:intergenic | 45.0% | |
| GTTTGAGGAAATGGGAGAGT+TGG | + | chr1_4:71810856-71810875 | None:intergenic | 45.0% | |
| GAATGGGTCGTTTGAGGAAA+TGG | + | chr1_4:71810865-71810884 | None:intergenic | 45.0% | |
| TGGATGCGGTATCTGTGTTA+AGG | - | chr1_4:71811256-71811275 | Msa0183040:intron | 45.0% | |
| AAGCTACACAGGTTTGTGTG+CGG | - | chr1_4:71811458-71811477 | Msa0183040:CDS | 45.0% | |
| !! | CTTGGTTTGGTTGGGACAAA+TGG | - | chr1_4:71811586-71811605 | Msa0183040:CDS | 45.0% |
| ! | GTCGACTGCACTTAAGGTTT+TGG | - | chr1_4:71811618-71811637 | Msa0183040:CDS | 45.0% |
| !! | ACTGCACTTAAGGTTTTGGC+TGG | - | chr1_4:71811622-71811641 | Msa0183040:CDS | 45.0% |
| ACTGTGAAACGACCCAAGTT+GGG | + | chr1_4:71811658-71811677 | None:intergenic | 45.0% | |
| TACTGTGAAACGACCCAAGT+TGG | + | chr1_4:71811659-71811678 | None:intergenic | 45.0% | |
| TGGAATTTCCGCCTTCTTTG+TGG | - | chr1_4:71811970-71811989 | Msa0183040:intron | 45.0% | |
| CATTGTGTTGGGTGTGAAAG+GGG | - | chr1_4:71812054-71812073 | Msa0183040:intron | 45.0% | |
| ! | GGCATATCTCTAGGAAGTGT+GGG | + | chr1_4:71812090-71812109 | None:intergenic | 45.0% |
| ! | TGGCATATCTCTAGGAAGTG+TGG | + | chr1_4:71812091-71812110 | None:intergenic | 45.0% |
| GATTAGAGGCCAGAAGGAAA+AGG | + | chr1_4:71812433-71812452 | None:intergenic | 45.0% | |
| GGAATGTGGTCAACATACTG+AGG | + | chr1_4:71812498-71812517 | None:intergenic | 45.0% | |
| !!! | CTTGCACAGCTTTTGGAATG+TGG | + | chr1_4:71812512-71812531 | None:intergenic | 45.0% |
| CACATTCCAAAAGCTGTGCA+AGG | - | chr1_4:71812510-71812529 | Msa0183040:CDS | 45.0% | |
| ! | ACATTCCCTTGCACAGCTTT+TGG | + | chr1_4:71812519-71812538 | None:intergenic | 45.0% |
| AAAAGCTGTGCAAGGGAATG+TGG | - | chr1_4:71812518-71812537 | Msa0183040:CDS | 45.0% | |
| AAAGCTGTGCAAGGGAATGT+GGG | - | chr1_4:71812519-71812538 | Msa0183040:CDS | 45.0% | |
| !! | CGTAGTGTTGGTGATCTTTC+AGG | - | chr1_4:71812621-71812640 | Msa0183040:intron | 45.0% |
| !! | AGTGTTGGTGATCTTTCAGG+GGG | - | chr1_4:71812624-71812643 | Msa0183040:intron | 45.0% |
| TGAAAGCTGCCCAAGTTGTT+CGG | - | chr1_4:71812745-71812764 | Msa0183040:CDS | 45.0% | |
| GAGCAATGACCGAACAACTT+GGG | + | chr1_4:71812757-71812776 | None:intergenic | 45.0% | |
| TGAGCAATGACCGAACAACT+TGG | + | chr1_4:71812758-71812777 | None:intergenic | 45.0% | |
| AAGTTGTTCGGTCATTGCTC+AGG | - | chr1_4:71812757-71812776 | Msa0183040:CDS | 45.0% | |
| ! | CGAGCACGATCTTAGTGTTT+TGG | - | chr1_4:71812920-71812939 | Msa0183040:intron | 45.0% |
| TATGGCAAACCTGGTGCATA+TGG | - | chr1_4:71812972-71812991 | Msa0183040:intron | 45.0% | |
| GTTACAACACCATATGCACC+AGG | + | chr1_4:71812984-71813003 | None:intergenic | 45.0% | |
| CTTCCTTTCTCAGTCAGAGA+AGG | - | chr1_4:71813005-71813024 | Msa0183040:intron | 45.0% | |
| !! | ATGATGCATAGGTACCGGTA+CGG | - | chr1_4:71813229-71813248 | Msa0183040:intron | 45.0% |
| ! | AAATGAAGGTACGGGTACGT+TGG | - | chr1_4:71813300-71813319 | Msa0183040:intron | 45.0% |
| TTGGTGCAGCAAAAACGTAC+AGG | + | chr1_4:71813463-71813482 | None:intergenic | 45.0% | |
| TACCGGTACTTCTCCATGTT+TGG | - | chr1_4:71813554-71813573 | Msa0183040:intron | 45.0% | |
| ! | CTCCAAACATGGAGAAGTAC+CGG | + | chr1_4:71813559-71813578 | None:intergenic | 45.0% |
| AAGCATGGGTACTCCAAACA+TGG | + | chr1_4:71813570-71813589 | None:intergenic | 45.0% | |
| !! | CCTTGAGTTTTGGTCATGGT+TGG | + | chr1_4:71814171-71814190 | None:intergenic | 45.0% |
| CCAACCATGACCAAAACTCA+AGG | - | chr1_4:71814168-71814187 | Msa0183040:intron | 45.0% | |
| ATTGTGATGCTGGGTGAGAA+TGG | - | chr1_4:71814240-71814259 | Msa0183040:CDS | 45.0% | |
| TTGTGATGCTGGGTGAGAAT+GGG | - | chr1_4:71814241-71814260 | Msa0183040:CDS | 45.0% | |
| ! | CCTTCTCCTTTTATTCAGGC+CGG | - | chr1_4:71814353-71814372 | Msa0183040:CDS | 45.0% |
| GATCCACCTTCTATAGTGTC+AGG | + | chr1_4:71814389-71814408 | None:intergenic | 45.0% | |
| !! | TGAACAGTTGATGGACCAAG+AGG | - | chr1_4:71814562-71814581 | Msa0183040:intron | 45.0% |
| GAGGTTCAGAATCTTTCTGG+TGG | - | chr1_4:71814581-71814600 | Msa0183040:intron | 45.0% | |
| GTTGCGTTATGCCTTTGTCT+TGG | - | chr1_4:71814617-71814636 | Msa0183040:intron | 45.0% | |
| CAGGGCAGACACAATAACTA+AGG | + | chr1_4:71814711-71814730 | None:intergenic | 45.0% | |
| GTAGACGGGAAAGAAAAGAC+AGG | + | chr1_4:71814730-71814749 | None:intergenic | 45.0% | |
| ! | CAGATTTGGCTTCTCTAGTG+TGG | + | chr1_4:71814948-71814967 | None:intergenic | 45.0% |
| CGACATCACCAACACAGATT+TGG | + | chr1_4:71814962-71814981 | None:intergenic | 45.0% | |
| TGCAGCAACAATACGCTGTT+CGG | + | chr1_4:71815363-71815382 | None:intergenic | 45.0% | |
| CGTTGAGCACGATTTCATCA+TGG | - | chr1_4:71815430-71815449 | Msa0183040:intron | 45.0% | |
| TGTCCACAATCATTGCTGAC+TGG | - | chr1_4:71815518-71815537 | Msa0183040:CDS | 45.0% | |
| ! | GTCCACAATCATTGCTGACT+GGG | - | chr1_4:71815519-71815538 | Msa0183040:CDS | 45.0% |
| ATCCCAGTCAGCAATGATTG+TGG | + | chr1_4:71815524-71815543 | None:intergenic | 45.0% | |
| TCCTTGGGCGGAAATTAGTT+GGG | + | chr1_4:71815734-71815753 | None:intergenic | 45.0% | |
| ATCCTTGGGCGGAAATTAGT+TGG | + | chr1_4:71815735-71815754 | None:intergenic | 45.0% | |
| !! | CAAGTTTGTTGATCCTTGGG+CGG | + | chr1_4:71815746-71815765 | None:intergenic | 45.0% |
| GACAGAGAGCAAAAGAATGC+TGG | - | chr1_4:71815777-71815796 | Msa0183040:intron | 45.0% | |
| !!! | GTTGGTCTTTTTCCCGTTGA+AGG | - | chr1_4:71816020-71816039 | Msa0183040:five_prime_UTR | 45.0% |
| TGAAGAGTCTACATGTAGGC+AGG | - | chr1_4:71816058-71816077 | Msa0183040:five_prime_UTR | 45.0% | |
| CATGTAGGCAGGACATATGT+TGG | - | chr1_4:71816069-71816088 | Msa0183040:five_prime_UTR | 45.0% | |
| ATGGGAGAGTTGGGGGATTA+GGG | + | chr1_4:71810846-71810865 | None:intergenic | 50.0% | |
| AATGGGAGAGTTGGGGGATT+AGG | + | chr1_4:71810847-71810866 | None:intergenic | 50.0% | |
| TGAGGAAATGGGAGAGTTGG+GGG | + | chr1_4:71810853-71810872 | None:intergenic | 50.0% | |
| CGTCGCAGTTGTCAACATGT+CGG | - | chr1_4:71810990-71811009 | Msa0183040:intron | 50.0% | |
| GCATCTGTCGTTGCTAACGA+TGG | + | chr1_4:71811034-71811053 | None:intergenic | 50.0% | |
| AGTTGTCCTGTCGTCAGAAC+CGG | - | chr1_4:71811087-71811106 | Msa0183040:intron | 50.0% | |
| !! | TACTTACCGGTTCTGACGAC+AGG | + | chr1_4:71811096-71811115 | None:intergenic | 50.0% |
| ! | AGGGCCGTGATGTTACTTAC+CGG | + | chr1_4:71811109-71811128 | None:intergenic | 50.0% |
| !! | GGCAAGTGCTTGGTTTGGTT+GGG | - | chr1_4:71811578-71811597 | Msa0183040:CDS | 50.0% |
| TGGGAAGTCGACTGCACTTA+AGG | - | chr1_4:71811612-71811631 | Msa0183040:CDS | 50.0% | |
| AATCAGGCGGTTCCTGCAAA+TGG | + | chr1_4:71811760-71811779 | None:intergenic | 50.0% | |
| ATTTGCAGGAACCGCCTGAT+TGG | - | chr1_4:71811759-71811778 | Msa0183040:intron | 50.0% | |
| CTAAGGGCGAACCACAAAGA+AGG | + | chr1_4:71811984-71812003 | None:intergenic | 50.0% | |
| TGCCGCAATTAGGCAGCTAA+GGG | + | chr1_4:71812000-71812019 | None:intergenic | 50.0% | |
| ATGCCGCAATTAGGCAGCTA+AGG | + | chr1_4:71812001-71812020 | None:intergenic | 50.0% | |
| AGCTGCCTAATTGCGGCATT+TGG | - | chr1_4:71812002-71812021 | Msa0183040:intron | 50.0% | |
| GCTGCCTAATTGCGGCATTT+GGG | - | chr1_4:71812003-71812022 | Msa0183040:intron | 50.0% | |
| GCAACCCAAATGCCGCAATT+AGG | + | chr1_4:71812010-71812029 | None:intergenic | 50.0% | |
| TGTGTTGGAGGCTGCAATGA+AGG | + | chr1_4:71812032-71812051 | None:intergenic | 50.0% | |
| AAGCTGTGCAAGGGAATGTG+GGG | - | chr1_4:71812520-71812539 | Msa0183040:CDS | 50.0% | |
| GCTCCAAAGGTTTGCCATTG+CGG | - | chr1_4:71812650-71812669 | Msa0183040:intron | 50.0% | |
| CAACCGCAATGGCAAACCTT+TGG | + | chr1_4:71812656-71812675 | None:intergenic | 50.0% | |
| TTGGATGGCAACAACCGCAA+TGG | + | chr1_4:71812667-71812686 | None:intergenic | 50.0% | |
| GGTCATTGCTCAGGCCTAAT+AGG | - | chr1_4:71812766-71812785 | Msa0183040:CDS | 50.0% | |
| !! | ACATGGAGAAGTACCGGTAC+CGG | + | chr1_4:71813553-71813572 | None:intergenic | 50.0% |
| TGAATGTAAGGCGGGTCTAC+AGG | - | chr1_4:71813860-71813879 | Msa0183040:intron | 50.0% | |
| GAATGTAAGGCGGGTCTACA+GGG | - | chr1_4:71813861-71813880 | Msa0183040:intron | 50.0% | |
| GACGACCTTCATTCGTATGC+TGG | - | chr1_4:71814272-71814291 | Msa0183040:CDS | 50.0% | |
| CCGGCCTGAATAAAAGGAGA+AGG | + | chr1_4:71814356-71814375 | None:intergenic | 50.0% | |
| AGATGTCTGCAGGCTGTTGT+AGG | + | chr1_4:71815307-71815326 | None:intergenic | 50.0% | |
| ACCCAACTAATTTCCGCCCA+AGG | - | chr1_4:71815730-71815749 | Msa0183040:CDS | 50.0% | |
| ACCAAACCAAGCACTTGCCC+CGG | + | chr1_4:71811577-71811596 | None:intergenic | 55.0% | |
| !! | GGGCAAGTGCTTGGTTTGGT+TGG | - | chr1_4:71811577-71811596 | Msa0183040:CDS | 55.0% |
| AGGGCGAACCACAAAGAAGG+CGG | + | chr1_4:71811981-71812000 | None:intergenic | 55.0% | |
| CGCCCTTAGCTGCCTAATTG+CGG | - | chr1_4:71811995-71812014 | Msa0183040:intron | 55.0% | |
| TGTGTTGGGTGTGAAAGGGG+TGG | - | chr1_4:71812057-71812076 | Msa0183040:intron | 55.0% | |
| TTTCAGGGGGTGAGCTCCAA+AGG | - | chr1_4:71812637-71812656 | Msa0183040:intron | 55.0% | |
| !! | ATAGGTACCGGTACGGTACC+CGG | - | chr1_4:71813236-71813255 | Msa0183040:intron | 55.0% |
| TACGGTACCCGGTATGGGTA+CGG | - | chr1_4:71813247-71813266 | Msa0183040:intron | 55.0% | |
| ACAGGTACCCGTACCCATAC+CGG | + | chr1_4:71813258-71813277 | None:intergenic | 55.0% | |
| ACGAGTACCATACGCGTACC+CGG | - | chr1_4:71813531-71813550 | Msa0183040:intron | 55.0% | |
| !! | CATGGAGAAGTACCGGTACC+GGG | + | chr1_4:71813552-71813571 | None:intergenic | 55.0% |
| GGCGGGTCTACAGGGTAATA+AGG | - | chr1_4:71813869-71813888 | Msa0183040:CDS | 55.0% | |
| CTAGGTTGCAGAGACTCCAC+AGG | - | chr1_4:71814104-71814123 | Msa0183040:intron | 55.0% | |
| ATGCTGGGTGAGAATGGGAC+AGG | - | chr1_4:71814246-71814265 | Msa0183040:CDS | 55.0% | |
| GGGGGTGAGTGTATGCATCA+CGG | + | chr1_4:71814508-71814527 | None:intergenic | 55.0% | |
| !! | ATTGCAGGTTGCCGGTTCCC+AGG | - | chr1_4:71811551-71811570 | Msa0183040:CDS | 60.0% |
| TGTGCAAGGGAATGTGGGGC+AGG | - | chr1_4:71812524-71812543 | Msa0183040:CDS | 60.0% | |
| TACCGGTACGGTACCCGGTA+TGG | - | chr1_4:71813241-71813260 | Msa0183040:intron | 60.0% | |
| ACCGGTACGGTACCCGGTAT+GGG | - | chr1_4:71813242-71813261 | Msa0183040:intron | 60.0% | |
| ! | ACCCATACCGGGTACCGTAC+CGG | + | chr1_4:71813246-71813265 | None:intergenic | 60.0% |
| ACGGTACCCGGTATGGGTAC+GGG | - | chr1_4:71813248-71813267 | Msa0183040:intron | 60.0% | |
| CAGGTACCCGTACCCATACC+GGG | + | chr1_4:71813257-71813276 | None:intergenic | 60.0% | |
| ACCATACGCGTACCCGGTAC+CGG | - | chr1_4:71813537-71813556 | Msa0183040:intron | 60.0% | |
| GACTCCACAGGAAACTGCCG+AGG | - | chr1_4:71814116-71814135 | Msa0183040:intron | 60.0% | |
| GCTTCCTCGGCAGTTTCCTG+TGG | + | chr1_4:71814123-71814142 | None:intergenic | 60.0% | |
| GCCGGGGCAAGTGCTTGGTT+TGG | - | chr1_4:71811573-71811592 | Msa0183040:CDS | 65.0% | |
| GCAGGAACCGCCTGATTGGC+AGG | - | chr1_4:71811763-71811782 | Msa0183040:intron | 65.0% | |
| ! | ACCGGTACCGGGTACGCGTA+TGG | + | chr1_4:71813541-71813560 | None:intergenic | 65.0% |
| !! | CAGGTTGCCGGTTCCCAGGC+CGG | - | chr1_4:71811555-71811574 | Msa0183040:CDS | 70.0% |
| !! | AGGTTGCCGGTTCCCAGGCC+GGG | - | chr1_4:71811556-71811575 | Msa0183040:CDS | 70.0% |
| ACTTGCCCCGGCCTGGGAAC+CGG | + | chr1_4:71811565-71811584 | None:intergenic | 70.0% | |
| CCAAGCACTTGCCCCGGCCT+GGG | + | chr1_4:71811571-71811590 | None:intergenic | 70.0% | |
| ACCAAGCACTTGCCCCGGCC+TGG | + | chr1_4:71811572-71811591 | None:intergenic | 70.0% | |
| !! | GGTTGCCGGTTCCCAGGCCG+GGG | - | chr1_4:71811557-71811576 | Msa0183040:CDS | 75.0% |
| CCCAGGCCGGGGCAAGTGCT+TGG | - | chr1_4:71811568-71811587 | Msa0183040:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 71810745 | 71816220 | 71810745 | ID=Msa0183040;Name=Msa0183040 |
| chr1_4 | mRNA | 71810745 | 71816220 | 71810745 | ID=Msa0183040-mRNA-1;Parent=Msa0183040;Name=Msa0183040-mRNA-1;_AED=0.16;_eAED=0.16;_QI=261|1|1|1|0.83|0.76|13|268|606 |
| chr1_4 | exon | 71810745 | 71810964 | 71810745 | ID=Msa0183040-mRNA-1:exon:24128;Parent=Msa0183040-mRNA-1 |
| chr1_4 | exon | 71811000 | 71811031 | 71811000 | ID=Msa0183040-mRNA-1:exon:24127;Parent=Msa0183040-mRNA-1 |
| chr1_4 | exon | 71811125 | 71811260 | 71811125 | ID=Msa0183040-mRNA-1:exon:24126;Parent=Msa0183040-mRNA-1 |
| chr1_4 | exon | 71811406 | 71811651 | 71811406 | ID=Msa0183040-mRNA-1:exon:24125;Parent=Msa0183040-mRNA-1 |
| chr1_4 | exon | 71812322 | 71812594 | 71812322 | ID=Msa0183040-mRNA-1:exon:24124;Parent=Msa0183040-mRNA-1 |
| chr1_4 | exon | 71812672 | 71812857 | 71812672 | ID=Msa0183040-mRNA-1:exon:24123;Parent=Msa0183040-mRNA-1 |
| chr1_4 | exon | 71813865 | 71814060 | 71813865 | ID=Msa0183040-mRNA-1:exon:24122;Parent=Msa0183040-mRNA-1 |
| chr1_4 | exon | 71814178 | 71814482 | 71814178 | ID=Msa0183040-mRNA-1:exon:24121;Parent=Msa0183040-mRNA-1 |
| chr1_4 | exon | 71815109 | 71815198 | 71815109 | ID=Msa0183040-mRNA-1:exon:24120;Parent=Msa0183040-mRNA-1 |
| chr1_4 | exon | 71815290 | 71815407 | 71815290 | ID=Msa0183040-mRNA-1:exon:24119;Parent=Msa0183040-mRNA-1 |
| chr1_4 | exon | 71815497 | 71815594 | 71815497 | ID=Msa0183040-mRNA-1:exon:24118;Parent=Msa0183040-mRNA-1 |
| chr1_4 | exon | 71815688 | 71815773 | 71815688 | ID=Msa0183040-mRNA-1:exon:24117;Parent=Msa0183040-mRNA-1 |
| chr1_4 | exon | 71815857 | 71816220 | 71815857 | ID=Msa0183040-mRNA-1:exon:24116;Parent=Msa0183040-mRNA-1 |
| chr1_4 | five_prime_UTR | 71815960 | 71816220 | 71815960 | ID=Msa0183040-mRNA-1:five_prime_utr;Parent=Msa0183040-mRNA-1 |
| chr1_4 | CDS | 71815857 | 71815959 | 71815857 | ID=Msa0183040-mRNA-1:cds;Parent=Msa0183040-mRNA-1 |
| chr1_4 | CDS | 71815688 | 71815773 | 71815688 | ID=Msa0183040-mRNA-1:cds;Parent=Msa0183040-mRNA-1 |
| chr1_4 | CDS | 71815497 | 71815594 | 71815497 | ID=Msa0183040-mRNA-1:cds;Parent=Msa0183040-mRNA-1 |
| chr1_4 | CDS | 71815290 | 71815407 | 71815290 | ID=Msa0183040-mRNA-1:cds;Parent=Msa0183040-mRNA-1 |
| chr1_4 | CDS | 71815109 | 71815198 | 71815109 | ID=Msa0183040-mRNA-1:cds;Parent=Msa0183040-mRNA-1 |
| chr1_4 | CDS | 71814178 | 71814482 | 71814178 | ID=Msa0183040-mRNA-1:cds;Parent=Msa0183040-mRNA-1 |
| chr1_4 | CDS | 71813865 | 71814060 | 71813865 | ID=Msa0183040-mRNA-1:cds;Parent=Msa0183040-mRNA-1 |
| chr1_4 | CDS | 71812672 | 71812857 | 71812672 | ID=Msa0183040-mRNA-1:cds;Parent=Msa0183040-mRNA-1 |
| chr1_4 | CDS | 71812322 | 71812594 | 71812322 | ID=Msa0183040-mRNA-1:cds;Parent=Msa0183040-mRNA-1 |
| chr1_4 | CDS | 71811406 | 71811651 | 71811406 | ID=Msa0183040-mRNA-1:cds;Parent=Msa0183040-mRNA-1 |
| chr1_4 | CDS | 71811141 | 71811260 | 71811141 | ID=Msa0183040-mRNA-1:cds;Parent=Msa0183040-mRNA-1 |
| chr1_4 | three_prime_UTR | 71811125 | 71811140 | 71811125 | ID=Msa0183040-mRNA-1:three_prime_utr;Parent=Msa0183040-mRNA-1 |
| chr1_4 | three_prime_UTR | 71811000 | 71811031 | 71811000 | ID=Msa0183040-mRNA-1:three_prime_utr;Parent=Msa0183040-mRNA-1 |
| chr1_4 | three_prime_UTR | 71810745 | 71810964 | 71810745 | ID=Msa0183040-mRNA-1:three_prime_utr;Parent=Msa0183040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
