Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486140 | XP_003592706.1 | 100.000 | 606 | 0 | 0 | 1 | 606 | 1 | 606 | 0.0 | 1253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486140 | sp|Q8LPJ4|AB2E_ARATH | 91.254 | 606 | 52 | 1 | 1 | 606 | 1 | 605 | 0.0 | 1153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486140 | G7IE72 | 100.000 | 606 | 0 | 0 | 1 | 606 | 1 | 606 | 0.0 | 1253 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0183040 | Msa0486140 | 0.872860 | 2.298400e-67 | -8.615850e-47 |
| Msa0230670 | Msa0486140 | 0.971185 | 9.097506e-133 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486140 | MtrunA17_Chr1g0211721 | 100.000 | 606 | 0 | 0 | 1 | 606 | 1 | 606 | 0.0 | 1253 |
| Msa0486140 | MtrunA17_Chr1g0156551 | 96.046 | 607 | 23 | 1 | 1 | 606 | 77 | 683 | 0.0 | 1210 |
| Msa0486140 | MtrunA17_Chr4g0002101 | 87.043 | 602 | 76 | 2 | 5 | 606 | 1 | 600 | 0.0 | 1081 |
| Msa0486140 | MtrunA17_Chr1g0156441 | 88.980 | 245 | 24 | 1 | 323 | 567 | 11 | 252 | 1.81e-158 | 454 |
| Msa0486140 | MtrunA17_Chr1g0156441 | 29.461 | 241 | 118 | 6 | 103 | 326 | 59 | 264 | 1.04e-24 | 103 |
| Msa0486140 | MtrunA17_Chr1g0156461 | 77.833 | 203 | 43 | 2 | 1 | 202 | 1 | 202 | 5.67e-110 | 328 |
| Msa0486140 | MtrunA17_Chr1g0156451 | 57.292 | 96 | 2 | 1 | 239 | 334 | 1 | 57 | 1.67e-24 | 96.7 |
| Msa0486140 | MtrunA17_Chr3g0129301 | 29.586 | 169 | 104 | 5 | 377 | 540 | 461 | 619 | 4.16e-11 | 65.9 |
| Msa0486140 | MtrunA17_Chr3g0130211 | 27.869 | 183 | 119 | 6 | 375 | 547 | 67 | 246 | 9.37e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486140 | AT4G19210.1 | 91.254 | 606 | 52 | 1 | 1 | 606 | 1 | 605 | 0.0 | 1153 |
| Msa0486140 | AT3G13640.1 | 78.218 | 606 | 129 | 1 | 1 | 606 | 1 | 603 | 0.0 | 1000 |
| Msa0486140 | AT4G30300.1 | 66.477 | 176 | 56 | 3 | 355 | 528 | 1 | 175 | 2.24e-70 | 225 |
| Msa0486140 | AT4G30300.1 | 29.375 | 160 | 95 | 3 | 104 | 263 | 21 | 162 | 1.64e-12 | 66.6 |
| Msa0486140 | AT4G33460.1 | 31.481 | 162 | 98 | 6 | 374 | 527 | 70 | 226 | 3.91e-11 | 64.7 |
Find 173 sgRNAs with CRISPR-Local
Find 378 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCGGCAAGTTGATAATT+TGG | 0.141900 | 3_4:-3929410 | None:intergenic |
| CGTAATGTTGGTGATCTTTC+AGG | 0.171930 | 3_4:+3930639 | Msa0486140:CDS |
| AGAGGGATGGAAAGGAATTT+AGG | 0.182612 | 3_4:-3928830 | None:intergenic |
| CAAGAGGTTCAGAATCTTTC+TGG | 0.182659 | 3_4:+3932599 | Msa0486140:CDS |
| ACATGTATATCTCAGCATTT+TGG | 0.193506 | 3_4:-3930701 | None:intergenic |
| CCAAAACTCAAGGCAATTTC+AGG | 0.203901 | 3_4:+3932199 | Msa0486140:CDS |
| GCAATTCAGATCCTCGAAAA+TGG | 0.208418 | 3_4:-3929815 | None:intergenic |
| GACTTTATTTGCTGTTTATA+TGG | 0.218246 | 3_4:+3930973 | Msa0486140:CDS |
| GCAAGTGTCTAACAGATAAT+TGG | 0.222574 | 3_4:-3932490 | None:intergenic |
| ACATTCCCTTGCACAGCTTT+TGG | 0.248703 | 3_4:-3930534 | None:intergenic |
| CCTGAAATTGCCTTGAGTTT+TGG | 0.257880 | 3_4:-3932199 | None:intergenic |
| CGAGCACGATCTTAGTGTTT+TGG | 0.269250 | 3_4:+3930939 | Msa0486140:CDS |
| TATCAACTTGCCGAAGGATT+TGG | 0.275167 | 3_4:+3929416 | Msa0486140:CDS |
| TGATGAACCTTCCAGTTATC+TGG | 0.286678 | 3_4:+3930725 | Msa0486140:CDS |
| TTGTTCCAACAGAAAATCTT+AGG | 0.290058 | 3_4:+3931070 | Msa0486140:CDS |
| GAATGGGTCGTTTGAGGAAA+TGG | 0.290577 | 3_4:-3928883 | None:intergenic |
| GTCGACTGCACTTAAGGTTT+TGG | 0.295828 | 3_4:+3929637 | Msa0486140:CDS |
| TTTGAGGAAATGGGAGAGTT+GGG | 0.304723 | 3_4:-3928873 | None:intergenic |
| CAACAGAAAATCTTAGGTTT+CGG | 0.312251 | 3_4:+3931076 | Msa0486140:CDS |
| GAGGGATGGAAAGGAATTTA+GGG | 0.315570 | 3_4:-3928829 | None:intergenic |
| TCATCACATCTGATATAAAC+TGG | 0.317044 | 3_4:-3932547 | None:intergenic |
| AACAGAAAATCTTAGGTTTC+GGG | 0.326990 | 3_4:+3931077 | Msa0486140:CDS |
| ACCAAGCACTTGCCCCGGCC+TGG | 0.332750 | 3_4:-3929588 | None:intergenic |
| TAATTATAATTGCAGGTTGC+CGG | 0.348977 | 3_4:+3929562 | Msa0486140:intron |
| CTGTGTAGCTTAAAAGTATT+AGG | 0.350689 | 3_4:-3929465 | None:intergenic |
| GGGCAAGTGCTTGGTTTGGT+TGG | 0.352472 | 3_4:+3929596 | Msa0486140:CDS |
| CCCAGGCCGGGGCAAGTGCT+TGG | 0.354601 | 3_4:+3929587 | Msa0486140:CDS |
| GGCAAGTGCTTGGTTTGGTT+GGG | 0.358646 | 3_4:+3929597 | Msa0486140:CDS |
| GAAATCGTGCTCAACGATAA+AGG | 0.366245 | 3_4:-3933446 | None:intergenic |
| GGAGGTTTCTCTTACTTTCA+AGG | 0.366509 | 3_4:+3931098 | Msa0486140:CDS |
| ACTACTTATTGAACAGTTGA+TGG | 0.367488 | 3_4:+3932574 | Msa0486140:CDS |
| GTCAAAATTTCCTGCCAATC+AGG | 0.370858 | 3_4:-3929792 | None:intergenic |
| CTGTTTCACATCCAGATAAC+TGG | 0.373313 | 3_4:-3930736 | None:intergenic |
| TGGGAAGTCGACTGCACTTA+AGG | 0.380143 | 3_4:+3929631 | Msa0486140:CDS |
| CAGGTTGCCGGTTCCCAGGC+CGG | 0.381117 | 3_4:+3929574 | Msa0486140:intron |
| GGAAATTAATCAAACCTATT+GGG | 0.381933 | 3_4:-3930798 | None:intergenic |
| TTGGTTGGGACAAATGGAAT+TGG | 0.383851 | 3_4:+3929611 | Msa0486140:CDS |
| CTTGGTTTGGTTGGGACAAA+TGG | 0.384149 | 3_4:+3929605 | Msa0486140:CDS |
| ATTAATACTTGGATTTATAT+CGG | 0.384448 | 3_4:+3934218 | Msa0486140:three_prime_UTR |
| GCCGGGGCAAGTGCTTGGTT+TGG | 0.387478 | 3_4:+3929592 | Msa0486140:CDS |
| AGGTTGCCGGTTCCCAGGCC+GGG | 0.393335 | 3_4:+3929575 | Msa0486140:intron |
| ACTTGCCCCGGCCTGGGAAC+CGG | 0.394610 | 3_4:-3929581 | None:intergenic |
| TAACAGATAATTGGGACTTT+GGG | 0.395339 | 3_4:-3932481 | None:intergenic |
| TGGTTGGGACAAATGGAATT+GGG | 0.399770 | 3_4:+3929612 | Msa0486140:CDS |
| GATTCAAGTTTGTTGATCCT+TGG | 0.400390 | 3_4:-3933770 | None:intergenic |
| ATTCAAGTTTGTTGATCCTT+GGG | 0.401478 | 3_4:-3933769 | None:intergenic |
| TGCAGCAACAATACGCTGTT+CGG | 0.410104 | 3_4:-3933383 | None:intergenic |
| CAAACGACCCATTCTCTATT+CGG | 0.410737 | 3_4:+3928892 | Msa0486140:five_prime_UTR |
| ATCCTTGGGCGGAAATTAGT+TGG | 0.412838 | 3_4:-3933755 | None:intergenic |
| CTAACAGATAATTGGGACTT+TGG | 0.418945 | 3_4:-3932482 | None:intergenic |
| CCATCAAAGCATAACAAAAC+TGG | 0.419865 | 3_4:-3934186 | None:intergenic |
| TGGAAAATTGAAGCCCAACT+TGG | 0.425877 | 3_4:+3929661 | Msa0486140:CDS |
| AATGGGTCGTTTGAGGAAAT+GGG | 0.427611 | 3_4:-3928882 | None:intergenic |
| CAAGTGTCTAACAGATAATT+GGG | 0.435174 | 3_4:-3932489 | None:intergenic |
| ATTCCTTCTCTGACTGAGAA+AGG | 0.437002 | 3_4:-3931027 | None:intergenic |
| GGTCATTGCTCAGGCCCAAT+AGG | 0.438087 | 3_4:+3930784 | Msa0486140:CDS |
| GGAATTAATATCTTCTTGTC+CGG | 0.438408 | 3_4:+3931045 | Msa0486140:CDS |
| TGATGCCTTGCCATAAAAGT+TGG | 0.440033 | 3_4:+3934029 | Msa0486140:three_prime_UTR |
| TTGAAACCTGACACTATAGA+AGG | 0.440943 | 3_4:+3932401 | Msa0486140:CDS |
| GTAATGTTGGTGATCTTTCA+GGG | 0.441278 | 3_4:+3930640 | Msa0486140:CDS |
| CATTCTAGAGGATGATTTGA+AGG | 0.442384 | 3_4:+3929854 | Msa0486140:CDS |
| TCCTTGGGCGGAAATTAGTT+GGG | 0.449811 | 3_4:-3933754 | None:intergenic |
| TTCAGGCTTCATGTAGTTGA+AGG | 0.451867 | 3_4:+3932216 | Msa0486140:CDS |
| CAACCGCAATGGCAAACCTT+TGG | 0.455169 | 3_4:-3930671 | None:intergenic |
| GCAGGAACCGCCTGATTGGC+AGG | 0.457134 | 3_4:+3929782 | Msa0486140:intron |
| CGTTGAAATATGCCTTCAAC+GGG | 0.462172 | 3_4:-3934059 | None:intergenic |
| TACTGTGAAACGACCCAAGT+TGG | 0.462614 | 3_4:-3929675 | None:intergenic |
| TTCACAGATTATTGTGATGC+TGG | 0.464457 | 3_4:+3932251 | Msa0486140:CDS |
| AGTTGTCCTGTCGTCAGAAC+CGG | 0.468418 | 3_4:+3929106 | Msa0486140:CDS |
| GATCCACCTTCTATAGTGTC+AGG | 0.471777 | 3_4:-3932407 | None:intergenic |
| CAATTCAGATCCTCGAAAAT+GGG | 0.471862 | 3_4:-3929814 | None:intergenic |
| ATATCTGAGGAATTGTGTAT+TGG | 0.475022 | 3_4:+3929255 | Msa0486140:CDS |
| GAGTATAAACTCAGTCATCT+AGG | 0.476908 | 3_4:-3933835 | None:intergenic |
| GTATCTTTGTCCAAATCCTT+CGG | 0.478826 | 3_4:-3929426 | None:intergenic |
| AAGTTGTTCGGTCATTGCTC+AGG | 0.479261 | 3_4:+3930775 | Msa0486140:CDS |
| GGTTGCCGGTTCCCAGGCCG+GGG | 0.481360 | 3_4:+3929576 | Msa0486140:intron |
| TGAAAGCTGCCCAAGTTGTT+CGG | 0.481445 | 3_4:+3930763 | Msa0486140:CDS |
| GTTGCGTTATGCCTTTGTCT+TGG | 0.482528 | 3_4:+3932638 | Msa0486140:CDS |
| TGGATGCGGTATCTGTGTTA+AGG | 0.483465 | 3_4:+3929275 | Msa0486140:CDS |
| TTTGCAGTACAGTCAATTGA+AGG | 0.484553 | 3_4:-3933517 | None:intergenic |
| ACTGTGAAACGACCCAAGTT+GGG | 0.485280 | 3_4:-3929674 | None:intergenic |
| CCAAGCACTTGCCCCGGCCT+GGG | 0.485916 | 3_4:-3929587 | None:intergenic |
| ATTTGCAGGAACCGCCTGAT+TGG | 0.486998 | 3_4:+3929778 | Msa0486140:intron |
| AGCATAAGTTTGAGCTTCCT+CGG | 0.496954 | 3_4:-3932154 | None:intergenic |
| TACTTACCGGTTCTGACGAC+AGG | 0.500661 | 3_4:-3929112 | None:intergenic |
| GTTTGAGGAAATGGGAGAGT+TGG | 0.501465 | 3_4:-3928874 | None:intergenic |
| ATAATTTGGATAGCTTCAAA+AGG | 0.502077 | 3_4:-3929396 | None:intergenic |
| CGTTGAGCACGATTTCATCA+TGG | 0.508016 | 3_4:+3933453 | Msa0486140:CDS |
| ATTGCAGGTTGCCGGTTCCC+AGG | 0.508516 | 3_4:+3929570 | Msa0486140:intron |
| TTGAGGAAATGGGAGAGTTG+GGG | 0.509571 | 3_4:-3928872 | None:intergenic |
| AATAGAGAATGGGTCGTTTG+AGG | 0.510816 | 3_4:-3928889 | None:intergenic |
| GACGACCTTCATTCGTATGC+TGG | 0.512536 | 3_4:+3932293 | Msa0486140:CDS |
| CAGAAAGATTCTGAACCTCT+TGG | 0.512923 | 3_4:-3932598 | None:intergenic |
| ACTTGGATTTATATCGGTCA+TGG | 0.513895 | 3_4:+3934224 | Msa0486140:three_prime_UTR |
| TGACACTTACAGATAAGAAA+AGG | 0.514344 | 3_4:-3933570 | None:intergenic |
| AGAGCTTACCGAATAGAGAA+TGG | 0.515912 | 3_4:-3928900 | None:intergenic |
| TGCTGTTTATATGGCAAACC+TGG | 0.517732 | 3_4:+3930982 | Msa0486140:CDS |
| ACCAAACCAAGCACTTGCCC+CGG | 0.520624 | 3_4:-3929593 | None:intergenic |
| TGTGCAAGGGAATGTGGGGC+AGG | 0.520706 | 3_4:+3930542 | Msa0486140:CDS |
| AGTGTCAGGTTTCAACAAAC+CGG | 0.521126 | 3_4:-3932393 | None:intergenic |
| CATCACATCTGATATAAACT+GGG | 0.522285 | 3_4:-3932546 | None:intergenic |
| TATGGCAAACCTGGTGCATA+TGG | 0.523361 | 3_4:+3930991 | Msa0486140:CDS |
| AAAAGCTGTGCAAGGGAATG+TGG | 0.523524 | 3_4:+3930536 | Msa0486140:CDS |
| GGAAAATTGAAGCCCAACTT+GGG | 0.525005 | 3_4:+3929662 | Msa0486140:CDS |
| TGAGCAATGACCGAACAACT+TGG | 0.525619 | 3_4:-3930773 | None:intergenic |
| TCTATCAGATAGATGTCTGC+AGG | 0.531946 | 3_4:-3933337 | None:intergenic |
| GACAGAGAGCAAAAGAATGC+TGG | 0.532220 | 3_4:+3933800 | Msa0486140:CDS |
| GAATACCAGCATACGAATGA+AGG | 0.534723 | 3_4:-3932298 | None:intergenic |
| TGTCCACAATCATTGCTGAC+TGG | 0.536125 | 3_4:+3933541 | Msa0486140:CDS |
| GCTCCAAAGGTTTGCCATTG+CGG | 0.537822 | 3_4:+3930668 | Msa0486140:CDS |
| GGGTGAATCTGATTAATACT+TGG | 0.538276 | 3_4:+3934207 | Msa0486140:three_prime_UTR |
| AATTTGATGCACTGTTGCAT+TGG | 0.538513 | 3_4:-3933972 | None:intergenic |
| TTTAGGGTTTGATATTTAGA+CGG | 0.539610 | 3_4:-3928813 | None:intergenic |
| CAAGTTATAGATCGTAATGT+TGG | 0.541369 | 3_4:+3930627 | Msa0486140:CDS |
| ATTGTGATGCTGGGTGAGAA+TGG | 0.542652 | 3_4:+3932261 | Msa0486140:CDS |
| CTTCCTTTCTCAGTCAGAGA+AGG | 0.543896 | 3_4:+3931024 | Msa0486140:CDS |
| GATGACTGAGTTTATACTCA+AGG | 0.550664 | 3_4:+3933839 | Msa0486140:exon |
| TTGCTGCAAAAGTCATCAAG+AGG | 0.552612 | 3_4:+3933398 | Msa0486140:CDS |
| TGAAGAGTCTACATGTAGGC+AGG | 0.553342 | 3_4:+3934085 | Msa0486140:three_prime_UTR |
| GCTTCCTCGGCAGTTTCCTG+TGG | 0.555626 | 3_4:-3932141 | None:intergenic |
| CATGTAGGCAGGACATATGT+TGG | 0.556321 | 3_4:+3934096 | Msa0486140:three_prime_UTR |
| GTTATGCCTTTGTCTTGGAA+AGG | 0.557319 | 3_4:+3932643 | Msa0486140:CDS |
| GAGCTTACCGAATAGAGAAT+GGG | 0.560217 | 3_4:-3928899 | None:intergenic |
| CACATTCCAAAAGCTGTGCA+AGG | 0.561951 | 3_4:+3930528 | Msa0486140:CDS |
| CCGTTGAAATATGCCTTCAA+CGG | 0.565263 | 3_4:-3934060 | None:intergenic |
| CCGTTGAAGGCATATTTCAA+CGG | 0.565319 | 3_4:+3934060 | Msa0486140:three_prime_UTR |
| GTCCACAATCATTGCTGACT+GGG | 0.565913 | 3_4:+3933542 | Msa0486140:CDS |
| TGAGGAAATGGGAGAGTTGG+GGG | 0.568494 | 3_4:-3928871 | None:intergenic |
| ATGAGAGAGACATGAAGGAA+AGG | 0.568976 | 3_4:+3930580 | Msa0486140:CDS |
| CCAAATTATCAACTTGCCGA+AGG | 0.569243 | 3_4:+3929410 | Msa0486140:CDS |
| TATAGGAAGATTATGTGTTG+AGG | 0.569885 | 3_4:+3929206 | Msa0486140:intron |
| TTGTATGATACGTTGAACTC+AGG | 0.573498 | 3_4:-3932443 | None:intergenic |
| AAAGCTGTGCAAGGGAATGT+GGG | 0.574699 | 3_4:+3930537 | Msa0486140:CDS |
| TTGTGATGCTGGGTGAGAAT+GGG | 0.580939 | 3_4:+3932262 | Msa0486140:CDS |
| ATCCCAGTCAGCAATGATTG+TGG | 0.583341 | 3_4:-3933544 | None:intergenic |
| TTGGATGGCAACAACCGCAA+TGG | 0.587256 | 3_4:-3930682 | None:intergenic |
| TTACTTCACTCGCATTCTAG+AGG | 0.589481 | 3_4:+3929842 | Msa0486140:CDS |
| GAGCAATGACCGAACAACTT+GGG | 0.591716 | 3_4:-3930772 | None:intergenic |
| AAAGATACCACTCATAGATA+CGG | 0.592191 | 3_4:+3929441 | Msa0486140:CDS |
| TCACAGATTATTGTGATGCT+GGG | 0.595178 | 3_4:+3932252 | Msa0486140:CDS |
| ACCCAACTAATTTCCGCCCA+AGG | 0.596535 | 3_4:+3933753 | Msa0486140:CDS |
| ATGCTGGGTGAGAATGGGAC+AGG | 0.597656 | 3_4:+3932267 | Msa0486140:CDS |
| AAAATACCTTTCCAAGACAA+AGG | 0.600861 | 3_4:-3932649 | None:intergenic |
| GAGGTTCAGAATCTTTCTGG+TGG | 0.606749 | 3_4:+3932602 | Msa0486140:CDS |
| ATCAACTGTTCAATAAGTAG+TGG | 0.606997 | 3_4:-3932572 | None:intergenic |
| CAAGTTTGTTGATCCTTGGG+CGG | 0.607651 | 3_4:-3933766 | None:intergenic |
| CTAGGTTGCAGAGACTCCAC+AGG | 0.612709 | 3_4:+3932125 | Msa0486140:intron |
| GCATCTGTCGTTGCTAACGA+TGG | 0.618479 | 3_4:-3929050 | None:intergenic |
| TAATGTTGGTGATCTTTCAG+GGG | 0.618828 | 3_4:+3930641 | Msa0486140:CDS |
| GAAGATTGCTTACATATCTG+AGG | 0.618924 | 3_4:+3929242 | Msa0486140:CDS |
| TGAACAGTTGATGGACCAAG+AGG | 0.621724 | 3_4:+3932583 | Msa0486140:CDS |
| TCGGAATCAAGATATGCACT+TGG | 0.628638 | 3_4:-3933364 | None:intergenic |
| GATAGAGTTATTGTTTACGA+GGG | 0.628816 | 3_4:+3933490 | Msa0486140:CDS |
| GGAATGTGGTCAACATACTG+AGG | 0.630705 | 3_4:-3930513 | None:intergenic |
| AAACCTGACACTATAGAAGG+TGG | 0.635558 | 3_4:+3932404 | Msa0486140:CDS |
| AAAATTTCCTGCCAATCAGG+CGG | 0.635955 | 3_4:-3929789 | None:intergenic |
| CAACAAACTTGAATCAACAA+AGG | 0.636970 | 3_4:+3933778 | Msa0486140:CDS |
| TGATAGAGTTATTGTTTACG+AGG | 0.637216 | 3_4:+3933489 | Msa0486140:CDS |
| AGAAAATCTTAGGTTTCGGG+AGG | 0.637470 | 3_4:+3931080 | Msa0486140:CDS |
| ACATTCCAAAAGCTGTGCAA+GGG | 0.637987 | 3_4:+3930529 | Msa0486140:CDS |
| AAGCTGTGCAAGGGAATGTG+GGG | 0.647412 | 3_4:+3930538 | Msa0486140:CDS |
| ATCACATCTGATATAAACTG+GGG | 0.648487 | 3_4:-3932545 | None:intergenic |
| CGTCGCAGTTGTCAACATGT+CGG | 0.652133 | 3_4:+3929009 | Msa0486140:intron |
| GTTACAACACCATATGCACC+AGG | 0.652585 | 3_4:-3931000 | None:intergenic |
| TTCACATCCAGATAACTGGA+AGG | 0.653511 | 3_4:-3930732 | None:intergenic |
| GAGGAATTGTGTATTGGATG+CGG | 0.654426 | 3_4:+3929261 | Msa0486140:CDS |
| CCAACCATGACCAAAACTCA+AGG | 0.657607 | 3_4:+3932189 | Msa0486140:CDS |
| AATGTTGGTGATCTTTCAGG+GGG | 0.657975 | 3_4:+3930642 | Msa0486140:CDS |
| GACTCCACAGGAAACTGCCG+AGG | 0.659331 | 3_4:+3932137 | Msa0486140:CDS |
| ATTAGGACCGTATCTATGAG+TGG | 0.664710 | 3_4:-3929448 | None:intergenic |
| GGATTGAAGAGTCTACATGT+AGG | 0.687888 | 3_4:+3934081 | Msa0486140:three_prime_UTR |
| GTTATCTGGATGTGAAACAG+AGG | 0.693943 | 3_4:+3930739 | Msa0486140:CDS |
| TCACATCTGATATAAACTGG+GGG | 0.704498 | 3_4:-3932544 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAATTTAATTTAATTAT+AGG | + | chr3_4:3929189-3929208 | Msa0486140:intron | 0.0% |
| !!! | ATTTAATATATTTATTTTAA+TGG | - | chr3_4:3931705-3931724 | None:intergenic | 0.0% |
| !! | AAAAAATTAACCAAAATATA+AGG | - | chr3_4:3931740-3931759 | None:intergenic | 10.0% |
| !!! | ATTAGAATATTTTTATTTCA+AGG | - | chr3_4:3932004-3932023 | None:intergenic | 10.0% |
| !! | TATTCTAATAAATTAGATAT+TGG | + | chr3_4:3932015-3932034 | Msa0486140:intron | 10.0% |
| !! | AAAATGAAATCTGAAAAAAA+GGG | - | chr3_4:3929147-3929166 | None:intergenic | 15.0% |
| !! | TTCTTATATTCTATATTAGA+AGG | - | chr3_4:3929950-3929969 | None:intergenic | 15.0% |
| !! | ATGTCTTAAATTAAATCTTT+GGG | - | chr3_4:3930197-3930216 | None:intergenic | 15.0% |
| !! | AATGTCTTAAATTAAATCTT+TGG | - | chr3_4:3930198-3930217 | None:intergenic | 15.0% |
| !! | AAATCATATATAAACAATGA+TGG | - | chr3_4:3930226-3930245 | None:intergenic | 15.0% |
| !!! | AATTTTAAAAAATGAAGGTA+CGG | + | chr3_4:3931310-3931329 | Msa0486140:intron | 15.0% |
| !! | TAACCAAATAAAAATAGATA+TGG | + | chr3_4:3931514-3931533 | Msa0486140:intron | 15.0% |
| !! | AAATAAAAATAGATATGGTT+CGG | + | chr3_4:3931519-3931538 | Msa0486140:intron | 15.0% |
| !!! | TATTTTTAGTCCTTATATTT+TGG | + | chr3_4:3931727-3931746 | Msa0486140:intron | 15.0% |
| !! | TCAAAAAAAAAAAAATCTCA+AGG | - | chr3_4:3932684-3932703 | None:intergenic | 15.0% |
| !!! | TTGAGATTTTTTTTTTTTTG+AGG | + | chr3_4:3932683-3932702 | Msa0486140:intron | 15.0% |
| !!! | TGAGATTTTTTTTTTTTTGA+GGG | + | chr3_4:3932684-3932703 | Msa0486140:intron | 15.0% |
| !! | GAAATAAAATGTATACATTT+AGG | - | chr3_4:3933110-3933129 | None:intergenic | 15.0% |
| !! | TCTTTCTGTTTAAAAAATTT+AGG | + | chr3_4:3933617-3933636 | Msa0486140:intron | 15.0% |
| !! | CTTTCTGTTTAAAAAATTTA+GGG | + | chr3_4:3933618-3933637 | Msa0486140:intron | 15.0% |
| !! | ATTAATACTTGGATTTATAT+CGG | + | chr3_4:3934218-3934237 | Msa0486140:three_prime_UTR | 15.0% |
| !! | GAAAATGAAATCTGAAAAAA+AGG | - | chr3_4:3929148-3929167 | None:intergenic | 20.0% |
| !! | ATATCTTTGAGTGTTAATAA+TGG | + | chr3_4:3929340-3929359 | Msa0486140:intron | 20.0% |
| !! | TATCTTTGAGTGTTAATAAT+GGG | + | chr3_4:3929341-3929360 | Msa0486140:intron | 20.0% |
| !! | GTAATTGTAATTATAATTGC+AGG | + | chr3_4:3929555-3929574 | Msa0486140:intron | 20.0% |
| !!! | AACTAAAAAAAGGCTAATTT+TGG | - | chr3_4:3929705-3929724 | None:intergenic | 20.0% |
| !! | ACAATACAAATTTCAAAAAC+AGG | - | chr3_4:3930391-3930410 | None:intergenic | 20.0% |
| !! | ATTGAAATAAACATGATTAG+AGG | - | chr3_4:3930465-3930484 | None:intergenic | 20.0% |
| !! | TTCAATATACGTTATAATAC+AGG | + | chr3_4:3930479-3930498 | Msa0486140:intron | 20.0% |
| !! | AAATATAAATGCAATTTGAG+TGG | + | chr3_4:3931155-3931174 | Msa0486140:intron | 20.0% |
| !! | AATATAAATGCAATTTGAGT+GGG | + | chr3_4:3931156-3931175 | Msa0486140:intron | 20.0% |
| !!! | CGTCAAATTTTAAAAAATGA+AGG | + | chr3_4:3931305-3931324 | Msa0486140:intron | 20.0% |
| !!! | ATTTTAAAAAATGAAGGTAC+GGG | + | chr3_4:3931311-3931330 | Msa0486140:intron | 20.0% |
| !!! | GAACCATATCTATTTTTATT+TGG | - | chr3_4:3931520-3931539 | None:intergenic | 20.0% |
| !! | ATCAAAACTAAAGTGATTAT+GGG | - | chr3_4:3931778-3931797 | None:intergenic | 20.0% |
| !! | AATCAAAACTAAAGTGATTA+TGG | - | chr3_4:3931779-3931798 | None:intergenic | 20.0% |
| !! | ATTAATGAATCATGAATGTA+AGG | + | chr3_4:3931870-3931889 | Msa0486140:intron | 20.0% |
| !! | AAAGAATGAACATAAAATGA+AGG | - | chr3_4:3931976-3931995 | None:intergenic | 20.0% |
| !!! | GAGATTTTTTTTTTTTTGAG+GGG | + | chr3_4:3932685-3932704 | Msa0486140:intron | 20.0% |
| !!! | AGATTTTTTTTTTTTTGAGG+GGG | + | chr3_4:3932686-3932705 | Msa0486140:intron | 20.0% |
| !! | TTTAGGGTTTGATATTTAGA+CGG | - | chr3_4:3928816-3928835 | None:intergenic | 25.0% |
| ! | AATTACAATCAGAAACTGAA+TGG | - | chr3_4:3928965-3928984 | None:intergenic | 25.0% |
| ! | TTCAGTTTCTGATTGTAATT+TGG | + | chr3_4:3928965-3928984 | Msa0486140:intron | 25.0% |
| ! | TCAGTTTCTGATTGTAATTT+GGG | + | chr3_4:3928966-3928985 | Msa0486140:intron | 25.0% |
| ! | ATAATTTGGATAGCTTCAAA+AGG | - | chr3_4:3929399-3929418 | None:intergenic | 25.0% |
| !!! | AATTAGCCTTTTTTTAGTTG+TGG | + | chr3_4:3929706-3929725 | Msa0486140:intron | 25.0% |
| !!! | TTATTTTTCTTTCCATTTGC+AGG | + | chr3_4:3929764-3929783 | Msa0486140:intron | 25.0% |
| ! | ATTGCTAACGATATTGAATA+AGG | - | chr3_4:3929892-3929911 | None:intergenic | 25.0% |
| ! | TGCTATATTAAAACTACACA+TGG | - | chr3_4:3930130-3930149 | None:intergenic | 25.0% |
| ! | GGAAATTAATCAAACCTATT+GGG | - | chr3_4:3930801-3930820 | None:intergenic | 25.0% |
| ! | AGGAAATTAATCAAACCTAT+TGG | - | chr3_4:3930802-3930821 | None:intergenic | 25.0% |
| ! | ATATAAAGCAGAAACTAAAG+AGG | - | chr3_4:3930822-3930841 | None:intergenic | 25.0% |
| ! | AGTTTCTGCTTTATATATTG+TGG | + | chr3_4:3930826-3930845 | Msa0486140:intron | 25.0% |
| ! | ACATAGCTGAAAAAATAAAG+AGG | - | chr3_4:3930910-3930929 | None:intergenic | 25.0% |
| !!! | GACTTTATTTGCTGTTTATA+TGG | + | chr3_4:3930973-3930992 | Msa0486140:CDS | 25.0% |
| ! | ATATAAATGCAATTTGAGTG+GGG | + | chr3_4:3931157-3931176 | Msa0486140:intron | 25.0% |
| ! | ATGGTGTTTGTGAATATATT+TGG | + | chr3_4:3931212-3931231 | Msa0486140:intron | 25.0% |
| !! | TTTTGATGAAAATAGTAGAG+GGG | - | chr3_4:3931431-3931450 | None:intergenic | 25.0% |
| !! | CTTTTGATGAAAATAGTAGA+GGG | - | chr3_4:3931432-3931451 | None:intergenic | 25.0% |
| !! | CATCAAAAGCAAGATAATTT+TGG | + | chr3_4:3931443-3931462 | Msa0486140:intron | 25.0% |
| ! | ATGATGTGTTTGTTTAAATG+GGG | - | chr3_4:3931641-3931660 | None:intergenic | 25.0% |
| ! | GATGATGTGTTTGTTTAAAT+GGG | - | chr3_4:3931642-3931661 | None:intergenic | 25.0% |
| !! | TGATGATGTGTTTGTTTAAA+TGG | - | chr3_4:3931643-3931662 | None:intergenic | 25.0% |
| !!! | TTCATTACGTTTTGAATAAG+TGG | - | chr3_4:3931926-3931945 | None:intergenic | 25.0% |
| ! | AATGTATTCAAGAATGTAGA+CGG | - | chr3_4:3932766-3932785 | None:intergenic | 25.0% |
| !!! | TAAACATGTGTTGATTTTCT+TGG | + | chr3_4:3933048-3933067 | Msa0486140:intron | 25.0% |
| !!! | TAAGTGTCATTGTTTTTCAA+TGG | + | chr3_4:3933584-3933603 | Msa0486140:intron | 25.0% |
| !!! | TGACCTTTTTTTTTTTGTTG+AGG | + | chr3_4:3934157-3934176 | Msa0486140:three_prime_UTR | 25.0% |
| !!! | GACCTTTTTTTTTTTGTTGA+GGG | + | chr3_4:3934158-3934177 | Msa0486140:three_prime_UTR | 25.0% |
| !!! | ACCTTTTTTTTTTTGTTGAG+GGG | + | chr3_4:3934159-3934178 | Msa0486140:three_prime_UTR | 25.0% |
| ! | TTAGGGTTGTTCTTTTTAGA+GGG | - | chr3_4:3928850-3928869 | None:intergenic | 30.0% |
| ! | ATTAGGGTTGTTCTTTTTAG+AGG | - | chr3_4:3928851-3928870 | None:intergenic | 30.0% |
| ATGGAATCGAATTGAATTGA+GGG | - | chr3_4:3928941-3928960 | None:intergenic | 30.0% | |
| AATGGAATCGAATTGAATTG+AGG | - | chr3_4:3928942-3928961 | None:intergenic | 30.0% | |
| ! | CTGATTGTAATTTGGGATTT+AGG | + | chr3_4:3928973-3928992 | Msa0486140:intron | 30.0% |
| TATAGGAAGATTATGTGTTG+AGG | + | chr3_4:3929206-3929225 | Msa0486140:intron | 30.0% | |
| ATATCTGAGGAATTGTGTAT+TGG | + | chr3_4:3929255-3929274 | Msa0486140:CDS | 30.0% | |
| AAAGATACCACTCATAGATA+CGG | + | chr3_4:3929441-3929460 | Msa0486140:CDS | 30.0% | |
| !! | CTGTGTAGCTTAAAAGTATT+AGG | - | chr3_4:3929468-3929487 | None:intergenic | 30.0% |
| ! | CTAATACTTTTAAGCTACAC+AGG | + | chr3_4:3929466-3929485 | Msa0486140:CDS | 30.0% |
| TAATTATAATTGCAGGTTGC+CGG | + | chr3_4:3929562-3929581 | Msa0486140:intron | 30.0% | |
| GTCTATCCACAACTAAAAAA+AGG | - | chr3_4:3929715-3929734 | None:intergenic | 30.0% | |
| !! | ATTGTTTGAAAGCGTTATGT+TGG | + | chr3_4:3929969-3929988 | Msa0486140:intron | 30.0% |
| !!! | ACCTTTTACTTTTAAAGCGA+AGG | - | chr3_4:3930160-3930179 | None:intergenic | 30.0% |
| TAATGTTAGACTGTTGTGTT+GGG | - | chr3_4:3930320-3930339 | None:intergenic | 30.0% | |
| TTAATGTTAGACTGTTGTGT+TGG | - | chr3_4:3930321-3930340 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTGCCTTTTCCTTC+TGG | + | chr3_4:3930439-3930458 | Msa0486140:intron | 30.0% |
| !!! | TCATGTCTCTCTCATTTTTT+TGG | - | chr3_4:3930575-3930594 | None:intergenic | 30.0% |
| AAAAAATGAGAGAGACATGA+AGG | + | chr3_4:3930575-3930594 | Msa0486140:CDS | 30.0% | |
| CAAGTTATAGATCGTAATGT+TGG | + | chr3_4:3930627-3930646 | Msa0486140:CDS | 30.0% | |
| ! | ACATGTATATCTCAGCATTT+TGG | - | chr3_4:3930704-3930723 | None:intergenic | 30.0% |
| GGAATTAATATCTTCTTGTC+CGG | + | chr3_4:3931045-3931064 | Msa0486140:CDS | 30.0% | |
| TTGTTCCAACAGAAAATCTT+AGG | + | chr3_4:3931070-3931089 | Msa0486140:CDS | 30.0% | |
| CAACAGAAAATCTTAGGTTT+CGG | + | chr3_4:3931076-3931095 | Msa0486140:CDS | 30.0% | |
| AACAGAAAATCTTAGGTTTC+GGG | + | chr3_4:3931077-3931096 | Msa0486140:CDS | 30.0% | |
| TATCTCCTACATCTCATTTA+CGG | + | chr3_4:3931132-3931151 | Msa0486140:intron | 30.0% | |
| TATTTCCGTAAATGAGATGT+AGG | - | chr3_4:3931140-3931159 | None:intergenic | 30.0% | |
| TCTGAATATCTATGATGCAT+AGG | + | chr3_4:3931237-3931256 | Msa0486140:intron | 30.0% | |
| AAATTTGACGTATTACGTAC+AGG | - | chr3_4:3931295-3931314 | None:intergenic | 30.0% | |
| ! | GCTTTTGATGAAAATAGTAG+AGG | - | chr3_4:3931433-3931452 | None:intergenic | 30.0% |
| !! | TATATTCAGCTTTGAAGCAT+GGG | - | chr3_4:3931604-3931623 | None:intergenic | 30.0% |
| !! | ATATATTCAGCTTTGAAGCA+TGG | - | chr3_4:3931605-3931624 | None:intergenic | 30.0% |
| TGATGTGTTTGTTTAAATGG+GGG | - | chr3_4:3931640-3931659 | None:intergenic | 30.0% | |
| TAAAAGCTTAGATGATGTTC+AGG | + | chr3_4:3931814-3931833 | Msa0486140:intron | 30.0% | |
| AATGAATCATGAATGTAAGG+CGG | + | chr3_4:3931873-3931892 | Msa0486140:intron | 30.0% | |
| TAACAGATAATTGGGACTTT+GGG | - | chr3_4:3932484-3932503 | None:intergenic | 30.0% | |
| CAAGTGTCTAACAGATAATT+GGG | - | chr3_4:3932492-3932511 | None:intergenic | 30.0% | |
| ATCACATCTGATATAAACTG+GGG | - | chr3_4:3932548-3932567 | None:intergenic | 30.0% | |
| CATCACATCTGATATAAACT+GGG | - | chr3_4:3932549-3932568 | None:intergenic | 30.0% | |
| TCATCACATCTGATATAAAC+TGG | - | chr3_4:3932550-3932569 | None:intergenic | 30.0% | |
| ATCAACTGTTCAATAAGTAG+TGG | - | chr3_4:3932575-3932594 | None:intergenic | 30.0% | |
| ACTACTTATTGAACAGTTGA+TGG | + | chr3_4:3932574-3932593 | Msa0486140:CDS | 30.0% | |
| AAAATACCTTTCCAAGACAA+AGG | - | chr3_4:3932652-3932671 | None:intergenic | 30.0% | |
| ATGTATTCAAGAATGTAGAC+GGG | - | chr3_4:3932765-3932784 | None:intergenic | 30.0% | |
| CAGAGTGATTTACTTTAGAT+TGG | + | chr3_4:3932822-3932841 | Msa0486140:intron | 30.0% | |
| !!! | TGTTGATTTTCTTGGAAACT+TGG | + | chr3_4:3933056-3933075 | Msa0486140:intron | 30.0% |
| TTGCTATAGTAGAACAGTAA+TGG | - | chr3_4:3933160-3933179 | None:intergenic | 30.0% | |
| TGATAGAGTTATTGTTTACG+AGG | + | chr3_4:3933489-3933508 | Msa0486140:CDS | 30.0% | |
| GATAGAGTTATTGTTTACGA+GGG | + | chr3_4:3933490-3933509 | Msa0486140:CDS | 30.0% | |
| TGACACTTACAGATAAGAAA+AGG | - | chr3_4:3933573-3933592 | None:intergenic | 30.0% | |
| AAAAATTATGTTGTGCTCTC+TGG | + | chr3_4:3933661-3933680 | Msa0486140:intron | 30.0% | |
| !! | ATTCAAGTTTGTTGATCCTT+GGG | - | chr3_4:3933772-3933791 | None:intergenic | 30.0% |
| CAACAAACTTGAATCAACAA+AGG | + | chr3_4:3933778-3933797 | Msa0486140:CDS | 30.0% | |
| CAGACTGCAACAAAATAAAA+CGG | - | chr3_4:3933944-3933963 | None:intergenic | 30.0% | |
| TCCCCTCAACAAAAAAAAAA+AGG | - | chr3_4:3934163-3934182 | None:intergenic | 30.0% | |
| !!! | CAGTTTTGTTATGCTTTGAT+GGG | + | chr3_4:3934187-3934206 | Msa0486140:three_prime_UTR | 30.0% |
| !! | TTCTTTTTAGAGGGATGGAA+AGG | - | chr3_4:3928841-3928860 | None:intergenic | 35.0% |
| CAATCAGAAACTGAATGGAA+TGG | - | chr3_4:3928960-3928979 | None:intergenic | 35.0% | |
| !! | CATTCTTGACGACACTTTTT+GGG | - | chr3_4:3929079-3929098 | None:intergenic | 35.0% |
| ! | ACATTCTTGACGACACTTTT+TGG | - | chr3_4:3929080-3929099 | None:intergenic | 35.0% |
| GAAGATTGCTTACATATCTG+AGG | + | chr3_4:3929242-3929261 | Msa0486140:CDS | 35.0% | |
| GTATCTTTGTCCAAATCCTT+CGG | - | chr3_4:3929429-3929448 | None:intergenic | 35.0% | |
| TTGTGGATAGACATGATTTG+AGG | + | chr3_4:3929723-3929742 | Msa0486140:intron | 35.0% | |
| !! | GAAATTTTGACCCATTTTCG+AGG | + | chr3_4:3929804-3929823 | Msa0486140:CDS | 35.0% |
| CAATTCAGATCCTCGAAAAT+GGG | - | chr3_4:3929817-3929836 | None:intergenic | 35.0% | |
| ! | CATTCTAGAGGATGATTTGA+AGG | + | chr3_4:3929854-3929873 | Msa0486140:CDS | 35.0% |
| TCCAACACATTCATTGTGTT+GGG | + | chr3_4:3930062-3930081 | Msa0486140:intron | 35.0% | |
| !! | GCCTTCGCTTTAAAAGTAAA+AGG | + | chr3_4:3930156-3930175 | Msa0486140:intron | 35.0% |
| GCTACGTTTAATTCTAGTGA+AGG | - | chr3_4:3930266-3930285 | None:intergenic | 35.0% | |
| !! | GTAATGTTGGTGATCTTTCA+GGG | + | chr3_4:3930640-3930659 | Msa0486140:CDS | 35.0% |
| !! | TAATGTTGGTGATCTTTCAG+GGG | + | chr3_4:3930641-3930660 | Msa0486140:CDS | 35.0% |
| ! | GTATATCTCAGCATTTTGGA+TGG | - | chr3_4:3930700-3930719 | None:intergenic | 35.0% |
| ATATCACTGTGAACTGTCAT+TGG | + | chr3_4:3930849-3930868 | Msa0486140:intron | 35.0% | |
| !!! | GAACTGTCATTGGTTTTTGT+CGG | + | chr3_4:3930859-3930878 | Msa0486140:intron | 35.0% |
| !!! | AACTGTCATTGGTTTTTGTC+GGG | + | chr3_4:3930860-3930879 | Msa0486140:intron | 35.0% |
| ! | ATTTTCTGTTGGAACAAAGC+CGG | - | chr3_4:3931067-3931086 | None:intergenic | 35.0% |
| ! | CGAAACCTAAGATTTTCTGT+TGG | - | chr3_4:3931078-3931097 | None:intergenic | 35.0% |
| CAACACTGAGATTGATTGAA+TGG | + | chr3_4:3931193-3931212 | Msa0486140:intron | 35.0% | |
| TATCTATGATGCATAGGTAC+CGG | + | chr3_4:3931243-3931262 | Msa0486140:intron | 35.0% | |
| ATGAATCATGAATGTAAGGC+GGG | + | chr3_4:3931874-3931893 | Msa0486140:intron | 35.0% | |
| TTCACAGATTATTGTGATGC+TGG | + | chr3_4:3932251-3932270 | Msa0486140:CDS | 35.0% | |
| TCACAGATTATTGTGATGCT+GGG | + | chr3_4:3932252-3932271 | Msa0486140:CDS | 35.0% | |
| ! | TTCACCTTCTCCTTTTATTC+AGG | + | chr3_4:3932370-3932389 | Msa0486140:intron | 35.0% |
| TTGAAACCTGACACTATAGA+AGG | + | chr3_4:3932401-3932420 | Msa0486140:CDS | 35.0% | |
| TTGTATGATACGTTGAACTC+AGG | - | chr3_4:3932446-3932465 | None:intergenic | 35.0% | |
| CTAACAGATAATTGGGACTT+TGG | - | chr3_4:3932485-3932504 | None:intergenic | 35.0% | |
| GCAAGTGTCTAACAGATAAT+TGG | - | chr3_4:3932493-3932512 | None:intergenic | 35.0% | |
| TCACATCTGATATAAACTGG+GGG | - | chr3_4:3932547-3932566 | None:intergenic | 35.0% | |
| ! | ACTGCTGTTTATTTCCTCTA+TGG | + | chr3_4:3932920-3932939 | Msa0486140:intron | 35.0% |
| CATCACAAATAGATGTCTAC+AGG | - | chr3_4:3933183-3933202 | None:intergenic | 35.0% | |
| AAACACACAACAAAGCTAAG+TGG | - | chr3_4:3933234-3933253 | None:intergenic | 35.0% | |
| TTTGCAGTACAGTCAATTGA+AGG | - | chr3_4:3933520-3933539 | None:intergenic | 35.0% | |
| !! | GATTCAAGTTTGTTGATCCT+TGG | - | chr3_4:3933773-3933792 | None:intergenic | 35.0% |
| GAGTATAAACTCAGTCATCT+AGG | - | chr3_4:3933838-3933857 | None:intergenic | 35.0% | |
| GATGACTGAGTTTATACTCA+AGG | + | chr3_4:3933839-3933858 | Msa0486140:exon | 35.0% | |
| !! | TTTGCATTTGCTATTGCTCT+TGG | + | chr3_4:3933881-3933900 | Msa0486140:intron | 35.0% |
| AATTTGATGCACTGTTGCAT+TGG | - | chr3_4:3933975-3933994 | None:intergenic | 35.0% | |
| TCAATTAAAGCTGAGATTCG+AGG | - | chr3_4:3934007-3934026 | None:intergenic | 35.0% | |
| ! | AAAGACCAACTTTTATGGCA+AGG | - | chr3_4:3934037-3934056 | None:intergenic | 35.0% |
| ! | GGGAAAAAGACCAACTTTTA+TGG | - | chr3_4:3934042-3934061 | None:intergenic | 35.0% |
| CCATCAAAGCATAACAAAAC+TGG | - | chr3_4:3934189-3934208 | None:intergenic | 35.0% | |
| !!! | CCAGTTTTGTTATGCTTTGA+TGG | + | chr3_4:3934186-3934205 | Msa0486140:three_prime_UTR | 35.0% |
| GGGTGAATCTGATTAATACT+TGG | + | chr3_4:3934207-3934226 | Msa0486140:three_prime_UTR | 35.0% | |
| GAGGGATGGAAAGGAATTTA+GGG | - | chr3_4:3928832-3928851 | None:intergenic | 40.0% | |
| AGAGGGATGGAAAGGAATTT+AGG | - | chr3_4:3928833-3928852 | None:intergenic | 40.0% | |
| !! | GGTTGTTCTTTTTAGAGGGA+TGG | - | chr3_4:3928846-3928865 | None:intergenic | 40.0% |
| TTTGAGGAAATGGGAGAGTT+GGG | - | chr3_4:3928876-3928895 | None:intergenic | 40.0% | |
| AATGGGTCGTTTGAGGAAAT+GGG | - | chr3_4:3928885-3928904 | None:intergenic | 40.0% | |
| AATAGAGAATGGGTCGTTTG+AGG | - | chr3_4:3928892-3928911 | None:intergenic | 40.0% | |
| CAAACGACCCATTCTCTATT+CGG | + | chr3_4:3928892-3928911 | Msa0486140:five_prime_UTR | 40.0% | |
| GAGCTTACCGAATAGAGAAT+GGG | - | chr3_4:3928902-3928921 | None:intergenic | 40.0% | |
| AGAGCTTACCGAATAGAGAA+TGG | - | chr3_4:3928903-3928922 | None:intergenic | 40.0% | |
| GAGGAATTGTGTATTGGATG+CGG | + | chr3_4:3929261-3929280 | Msa0486140:CDS | 40.0% | |
| !! | CCTTCGGCAAGTTGATAATT+TGG | - | chr3_4:3929413-3929432 | None:intergenic | 40.0% |
| CCAAATTATCAACTTGCCGA+AGG | + | chr3_4:3929410-3929429 | Msa0486140:CDS | 40.0% | |
| TATCAACTTGCCGAAGGATT+TGG | + | chr3_4:3929416-3929435 | Msa0486140:CDS | 40.0% | |
| ATTAGGACCGTATCTATGAG+TGG | - | chr3_4:3929451-3929470 | None:intergenic | 40.0% | |
| TTGGTTGGGACAAATGGAAT+TGG | + | chr3_4:3929611-3929630 | Msa0486140:CDS | 40.0% | |
| TGGTTGGGACAAATGGAATT+GGG | + | chr3_4:3929612-3929631 | Msa0486140:CDS | 40.0% | |
| TGGAAAATTGAAGCCCAACT+TGG | + | chr3_4:3929661-3929680 | Msa0486140:CDS | 40.0% | |
| GGAAAATTGAAGCCCAACTT+GGG | + | chr3_4:3929662-3929681 | Msa0486140:CDS | 40.0% | |
| AAAATTTCCTGCCAATCAGG+CGG | - | chr3_4:3929792-3929811 | None:intergenic | 40.0% | |
| GTCAAAATTTCCTGCCAATC+AGG | - | chr3_4:3929795-3929814 | None:intergenic | 40.0% | |
| GCAATTCAGATCCTCGAAAA+TGG | - | chr3_4:3929818-3929837 | None:intergenic | 40.0% | |
| TTACTTCACTCGCATTCTAG+AGG | + | chr3_4:3929842-3929861 | Msa0486140:CDS | 40.0% | |
| CAACACAATGAATGTGTTGG+AGG | - | chr3_4:3930063-3930082 | None:intergenic | 40.0% | |
| CTCCAACACATTCATTGTGT+TGG | + | chr3_4:3930061-3930080 | Msa0486140:intron | 40.0% | |
| ACCCAACACAATGAATGTGT+TGG | - | chr3_4:3930066-3930085 | None:intergenic | 40.0% | |
| TTCATTGTGTTGGGTGTGAA+AGG | + | chr3_4:3930071-3930090 | Msa0486140:intron | 40.0% | |
| TCATTGTGTTGGGTGTGAAA+GGG | + | chr3_4:3930072-3930091 | Msa0486140:intron | 40.0% | |
| ACTACACATGGCATATCTCT+AGG | - | chr3_4:3930118-3930137 | None:intergenic | 40.0% | |
| AAACATGATTAGAGGCCAGA+AGG | - | chr3_4:3930457-3930476 | None:intergenic | 40.0% | |
| ACATTCCAAAAGCTGTGCAA+GGG | + | chr3_4:3930529-3930548 | Msa0486140:CDS | 40.0% | |
| ATGAGAGAGACATGAAGGAA+AGG | + | chr3_4:3930580-3930599 | Msa0486140:CDS | 40.0% | |
| !! | CGTAATGTTGGTGATCTTTC+AGG | + | chr3_4:3930639-3930658 | Msa0486140:CDS | 40.0% |
| !! | AATGTTGGTGATCTTTCAGG+GGG | + | chr3_4:3930642-3930661 | Msa0486140:CDS | 40.0% |
| TGATGAACCTTCCAGTTATC+TGG | + | chr3_4:3930725-3930744 | Msa0486140:CDS | 40.0% | |
| TTCACATCCAGATAACTGGA+AGG | - | chr3_4:3930735-3930754 | None:intergenic | 40.0% | |
| CTGTTTCACATCCAGATAAC+TGG | - | chr3_4:3930739-3930758 | None:intergenic | 40.0% | |
| GTTATCTGGATGTGAAACAG+AGG | + | chr3_4:3930739-3930758 | Msa0486140:CDS | 40.0% | |
| ! | TGCTGTTTATATGGCAAACC+TGG | + | chr3_4:3930982-3931001 | Msa0486140:CDS | 40.0% |
| ATTCCTTCTCTGACTGAGAA+AGG | - | chr3_4:3931030-3931049 | None:intergenic | 40.0% | |
| AGAAAATCTTAGGTTTCGGG+AGG | + | chr3_4:3931080-3931099 | Msa0486140:CDS | 40.0% | |
| GGAGGTTTCTCTTACTTTCA+AGG | + | chr3_4:3931098-3931117 | Msa0486140:CDS | 40.0% | |
| TTTGGTTATTGCGTCGTAGT+TGG | - | chr3_4:3931502-3931521 | None:intergenic | 40.0% | |
| CCTAGATACAACATCAGAGA+AGG | - | chr3_4:3932110-3932129 | None:intergenic | 40.0% | |
| CCTTCTCTGATGTTGTATCT+AGG | + | chr3_4:3932107-3932126 | Msa0486140:intron | 40.0% | |
| AGCATAAGTTTGAGCTTCCT+CGG | - | chr3_4:3932157-3932176 | None:intergenic | 40.0% | |
| !! | CTTGAGTTTTGGTCATGGTT+GGG | - | chr3_4:3932191-3932210 | None:intergenic | 40.0% |
| !! | ATTGCCTTGAGTTTTGGTCA+TGG | - | chr3_4:3932196-3932215 | None:intergenic | 40.0% |
| ! | CCTGAAATTGCCTTGAGTTT+TGG | - | chr3_4:3932202-3932221 | None:intergenic | 40.0% |
| CCAAAACTCAAGGCAATTTC+AGG | + | chr3_4:3932199-3932218 | Msa0486140:CDS | 40.0% | |
| TTCAGGCTTCATGTAGTTGA+AGG | + | chr3_4:3932216-3932235 | Msa0486140:CDS | 40.0% | |
| GAATACCAGCATACGAATGA+AGG | - | chr3_4:3932301-3932320 | None:intergenic | 40.0% | |
| AACAAACCGGCCTGAATAAA+AGG | - | chr3_4:3932383-3932402 | None:intergenic | 40.0% | |
| AGTGTCAGGTTTCAACAAAC+CGG | - | chr3_4:3932396-3932415 | None:intergenic | 40.0% | |
| AAACCTGACACTATAGAAGG+TGG | + | chr3_4:3932404-3932423 | Msa0486140:CDS | 40.0% | |
| ! | GACTTTGGGCTAATTTTCTG+AGG | - | chr3_4:3932470-3932489 | None:intergenic | 40.0% |
| CAGAAAGATTCTGAACCTCT+TGG | - | chr3_4:3932601-3932620 | None:intergenic | 40.0% | |
| CAAGAGGTTCAGAATCTTTC+TGG | + | chr3_4:3932599-3932618 | Msa0486140:CDS | 40.0% | |
| GTTATGCCTTTGTCTTGGAA+AGG | + | chr3_4:3932643-3932662 | Msa0486140:CDS | 40.0% | |
| AAGGTGCACAAGTAATCTCA+AGG | - | chr3_4:3932713-3932732 | None:intergenic | 40.0% | |
| TAGACGGGAAAGAAAAGACA+GGG | - | chr3_4:3932750-3932769 | None:intergenic | 40.0% | |
| CTGAAAGAGCTAAATTACGC+TGG | - | chr3_4:3932805-3932824 | None:intergenic | 40.0% | |
| ATCTCAAGTCTCAACCATAG+AGG | - | chr3_4:3932937-3932956 | None:intergenic | 40.0% | |
| ! | AGATTTGGCTTCTCTAGTGT+GGG | - | chr3_4:3932969-3932988 | None:intergenic | 40.0% |
| TAGAGAAGCCAAATCTGTGT+TGG | + | chr3_4:3932973-3932992 | Msa0486140:intron | 40.0% | |
| !! | CAAATCTGTGTTGGTGATGT+CGG | + | chr3_4:3932982-3933001 | Msa0486140:intron | 40.0% |
| ! | TGACGTTGAAGCAAGCTTTT+TGG | + | chr3_4:3933201-3933220 | Msa0486140:intron | 40.0% |
| TCTATCAGATAGATGTCTGC+AGG | - | chr3_4:3933340-3933359 | None:intergenic | 40.0% | |
| TCGGAATCAAGATATGCACT+TGG | - | chr3_4:3933367-3933386 | None:intergenic | 40.0% | |
| TTGCTGCAAAAGTCATCAAG+AGG | + | chr3_4:3933398-3933417 | Msa0486140:CDS | 40.0% | |
| GAAATCGTGCTCAACGATAA+AGG | - | chr3_4:3933449-3933468 | None:intergenic | 40.0% | |
| AATTATGTTGTGCTCTCTGG+TGG | + | chr3_4:3933664-3933683 | Msa0486140:intron | 40.0% | |
| TTTCAGTTGCAGTGAAAGGT+AGG | - | chr3_4:3933914-3933933 | None:intergenic | 40.0% | |
| ! | CAGTTTTCAGTTGCAGTGAA+AGG | - | chr3_4:3933918-3933937 | None:intergenic | 40.0% |
| AAAGCTGAGATTCGAGGAAA+AGG | - | chr3_4:3934001-3934020 | None:intergenic | 40.0% | |
| TGATGCCTTGCCATAAAAGT+TGG | + | chr3_4:3934029-3934048 | Msa0486140:three_prime_UTR | 40.0% | |
| CGTTGAAATATGCCTTCAAC+GGG | - | chr3_4:3934062-3934081 | None:intergenic | 40.0% | |
| CCGTTGAAATATGCCTTCAA+CGG | - | chr3_4:3934063-3934082 | None:intergenic | 40.0% | |
| ! | CCGTTGAAGGCATATTTCAA+CGG | + | chr3_4:3934060-3934079 | Msa0486140:three_prime_UTR | 40.0% |
| GGATTGAAGAGTCTACATGT+AGG | + | chr3_4:3934081-3934100 | Msa0486140:three_prime_UTR | 40.0% | |
| TTGAGGAAATGGGAGAGTTG+GGG | - | chr3_4:3928875-3928894 | None:intergenic | 45.0% | |
| GTTTGAGGAAATGGGAGAGT+TGG | - | chr3_4:3928877-3928896 | None:intergenic | 45.0% | |
| GAATGGGTCGTTTGAGGAAA+TGG | - | chr3_4:3928886-3928905 | None:intergenic | 45.0% | |
| ! | AGGGCTGTGATGTTACTTAC+CGG | - | chr3_4:3929128-3929147 | None:intergenic | 45.0% |
| TGGATGCGGTATCTGTGTTA+AGG | + | chr3_4:3929275-3929294 | Msa0486140:CDS | 45.0% | |
| AAGCTACACAGGTTTGTGTG+CGG | + | chr3_4:3929477-3929496 | Msa0486140:intron | 45.0% | |
| !! | CTTGGTTTGGTTGGGACAAA+TGG | + | chr3_4:3929605-3929624 | Msa0486140:CDS | 45.0% |
| ! | GTCGACTGCACTTAAGGTTT+TGG | + | chr3_4:3929637-3929656 | Msa0486140:CDS | 45.0% |
| !! | ACTGCACTTAAGGTTTTGGC+TGG | + | chr3_4:3929641-3929660 | Msa0486140:CDS | 45.0% |
| ACTGTGAAACGACCCAAGTT+GGG | - | chr3_4:3929677-3929696 | None:intergenic | 45.0% | |
| TACTGTGAAACGACCCAAGT+TGG | - | chr3_4:3929678-3929697 | None:intergenic | 45.0% | |
| TGGAATTTCCGCCTTCTTTG+TGG | + | chr3_4:3929989-3930008 | Msa0486140:intron | 45.0% | |
| CATTGTGTTGGGTGTGAAAG+GGG | + | chr3_4:3930073-3930092 | Msa0486140:intron | 45.0% | |
| ! | GGCATATCTCTAGGAAGTGT+GGG | - | chr3_4:3930109-3930128 | None:intergenic | 45.0% |
| ! | TGGCATATCTCTAGGAAGTG+TGG | - | chr3_4:3930110-3930129 | None:intergenic | 45.0% |
| GATTAGAGGCCAGAAGGAAA+AGG | - | chr3_4:3930451-3930470 | None:intergenic | 45.0% | |
| GGAATGTGGTCAACATACTG+AGG | - | chr3_4:3930516-3930535 | None:intergenic | 45.0% | |
| !!! | CTTGCACAGCTTTTGGAATG+TGG | - | chr3_4:3930530-3930549 | None:intergenic | 45.0% |
| CACATTCCAAAAGCTGTGCA+AGG | + | chr3_4:3930528-3930547 | Msa0486140:CDS | 45.0% | |
| ! | ACATTCCCTTGCACAGCTTT+TGG | - | chr3_4:3930537-3930556 | None:intergenic | 45.0% |
| AAAAGCTGTGCAAGGGAATG+TGG | + | chr3_4:3930536-3930555 | Msa0486140:CDS | 45.0% | |
| AAAGCTGTGCAAGGGAATGT+GGG | + | chr3_4:3930537-3930556 | Msa0486140:CDS | 45.0% | |
| TGAAAGCTGCCCAAGTTGTT+CGG | + | chr3_4:3930763-3930782 | Msa0486140:CDS | 45.0% | |
| GAGCAATGACCGAACAACTT+GGG | - | chr3_4:3930775-3930794 | None:intergenic | 45.0% | |
| TGAGCAATGACCGAACAACT+TGG | - | chr3_4:3930776-3930795 | None:intergenic | 45.0% | |
| AAGTTGTTCGGTCATTGCTC+AGG | + | chr3_4:3930775-3930794 | Msa0486140:CDS | 45.0% | |
| ! | CGAGCACGATCTTAGTGTTT+TGG | + | chr3_4:3930939-3930958 | Msa0486140:CDS | 45.0% |
| TATGGCAAACCTGGTGCATA+TGG | + | chr3_4:3930991-3931010 | Msa0486140:CDS | 45.0% | |
| GTTACAACACCATATGCACC+AGG | - | chr3_4:3931003-3931022 | None:intergenic | 45.0% | |
| CTTCCTTTCTCAGTCAGAGA+AGG | + | chr3_4:3931024-3931043 | Msa0486140:CDS | 45.0% | |
| !! | ATGATGCATAGGTACCGGTA+CGG | + | chr3_4:3931248-3931267 | Msa0486140:intron | 45.0% |
| ! | AAATGAAGGTACGGGTACGT+TGG | + | chr3_4:3931319-3931338 | Msa0486140:intron | 45.0% |
| TTGGTGCAGCAAAAACGTAC+AGG | - | chr3_4:3931483-3931502 | None:intergenic | 45.0% | |
| TACCGGTACTTCTCCATGTT+TGG | + | chr3_4:3931574-3931593 | Msa0486140:intron | 45.0% | |
| ! | CTCCAAACATGGAGAAGTAC+CGG | - | chr3_4:3931579-3931598 | None:intergenic | 45.0% |
| AAGCATGGGTACTCCAAACA+TGG | - | chr3_4:3931590-3931609 | None:intergenic | 45.0% | |
| !! | CCTTGAGTTTTGGTCATGGT+TGG | - | chr3_4:3932192-3932211 | None:intergenic | 45.0% |
| CCAACCATGACCAAAACTCA+AGG | + | chr3_4:3932189-3932208 | Msa0486140:CDS | 45.0% | |
| ATTGTGATGCTGGGTGAGAA+TGG | + | chr3_4:3932261-3932280 | Msa0486140:CDS | 45.0% | |
| TTGTGATGCTGGGTGAGAAT+GGG | + | chr3_4:3932262-3932281 | Msa0486140:CDS | 45.0% | |
| ! | CCTTCTCCTTTTATTCAGGC+CGG | + | chr3_4:3932374-3932393 | Msa0486140:intron | 45.0% |
| GATCCACCTTCTATAGTGTC+AGG | - | chr3_4:3932410-3932429 | None:intergenic | 45.0% | |
| !! | TGAACAGTTGATGGACCAAG+AGG | + | chr3_4:3932583-3932602 | Msa0486140:CDS | 45.0% |
| GAGGTTCAGAATCTTTCTGG+TGG | + | chr3_4:3932602-3932621 | Msa0486140:CDS | 45.0% | |
| GTTGCGTTATGCCTTTGTCT+TGG | + | chr3_4:3932638-3932657 | Msa0486140:CDS | 45.0% | |
| CAGGGCAGACACAATAACTA+AGG | - | chr3_4:3932732-3932751 | None:intergenic | 45.0% | |
| GTAGACGGGAAAGAAAAGAC+AGG | - | chr3_4:3932751-3932770 | None:intergenic | 45.0% | |
| ! | CAGATTTGGCTTCTCTAGTG+TGG | - | chr3_4:3932970-3932989 | None:intergenic | 45.0% |
| CGACATCACCAACACAGATT+TGG | - | chr3_4:3932984-3933003 | None:intergenic | 45.0% | |
| TGCAGCAACAATACGCTGTT+CGG | - | chr3_4:3933386-3933405 | None:intergenic | 45.0% | |
| CGTTGAGCACGATTTCATCA+TGG | + | chr3_4:3933453-3933472 | Msa0486140:CDS | 45.0% | |
| TGTCCACAATCATTGCTGAC+TGG | + | chr3_4:3933541-3933560 | Msa0486140:CDS | 45.0% | |
| ! | GTCCACAATCATTGCTGACT+GGG | + | chr3_4:3933542-3933561 | Msa0486140:CDS | 45.0% |
| ATCCCAGTCAGCAATGATTG+TGG | - | chr3_4:3933547-3933566 | None:intergenic | 45.0% | |
| TCCTTGGGCGGAAATTAGTT+GGG | - | chr3_4:3933757-3933776 | None:intergenic | 45.0% | |
| ATCCTTGGGCGGAAATTAGT+TGG | - | chr3_4:3933758-3933777 | None:intergenic | 45.0% | |
| !! | CAAGTTTGTTGATCCTTGGG+CGG | - | chr3_4:3933769-3933788 | None:intergenic | 45.0% |
| GACAGAGAGCAAAAGAATGC+TGG | + | chr3_4:3933800-3933819 | Msa0486140:CDS | 45.0% | |
| !!! | GTTGGTCTTTTTCCCGTTGA+AGG | + | chr3_4:3934047-3934066 | Msa0486140:three_prime_UTR | 45.0% |
| TGAAGAGTCTACATGTAGGC+AGG | + | chr3_4:3934085-3934104 | Msa0486140:three_prime_UTR | 45.0% | |
| CATGTAGGCAGGACATATGT+TGG | + | chr3_4:3934096-3934115 | Msa0486140:three_prime_UTR | 45.0% | |
| ATGGGAGAGTTGGGGGATTA+GGG | - | chr3_4:3928867-3928886 | None:intergenic | 50.0% | |
| AATGGGAGAGTTGGGGGATT+AGG | - | chr3_4:3928868-3928887 | None:intergenic | 50.0% | |
| TGAGGAAATGGGAGAGTTGG+GGG | - | chr3_4:3928874-3928893 | None:intergenic | 50.0% | |
| CGTCGCAGTTGTCAACATGT+CGG | + | chr3_4:3929009-3929028 | Msa0486140:intron | 50.0% | |
| GCATCTGTCGTTGCTAACGA+TGG | - | chr3_4:3929053-3929072 | None:intergenic | 50.0% | |
| AGTTGTCCTGTCGTCAGAAC+CGG | + | chr3_4:3929106-3929125 | Msa0486140:CDS | 50.0% | |
| !! | TACTTACCGGTTCTGACGAC+AGG | - | chr3_4:3929115-3929134 | None:intergenic | 50.0% |
| !! | GGCAAGTGCTTGGTTTGGTT+GGG | + | chr3_4:3929597-3929616 | Msa0486140:CDS | 50.0% |
| TGGGAAGTCGACTGCACTTA+AGG | + | chr3_4:3929631-3929650 | Msa0486140:CDS | 50.0% | |
| AATCAGGCGGTTCCTGCAAA+TGG | - | chr3_4:3929779-3929798 | None:intergenic | 50.0% | |
| ATTTGCAGGAACCGCCTGAT+TGG | + | chr3_4:3929778-3929797 | Msa0486140:intron | 50.0% | |
| CTAAGGGCGAACCACAAAGA+AGG | - | chr3_4:3930003-3930022 | None:intergenic | 50.0% | |
| TGCCGCAATTAGGCAGCTAA+GGG | - | chr3_4:3930019-3930038 | None:intergenic | 50.0% | |
| ATGCCGCAATTAGGCAGCTA+AGG | - | chr3_4:3930020-3930039 | None:intergenic | 50.0% | |
| AGCTGCCTAATTGCGGCATT+TGG | + | chr3_4:3930021-3930040 | Msa0486140:intron | 50.0% | |
| GCTGCCTAATTGCGGCATTT+GGG | + | chr3_4:3930022-3930041 | Msa0486140:intron | 50.0% | |
| GCAACCCAAATGCCGCAATT+AGG | - | chr3_4:3930029-3930048 | None:intergenic | 50.0% | |
| TGTGTTGGAGGCTGCAATGA+AGG | - | chr3_4:3930051-3930070 | None:intergenic | 50.0% | |
| AAGCTGTGCAAGGGAATGTG+GGG | + | chr3_4:3930538-3930557 | Msa0486140:CDS | 50.0% | |
| GCTCCAAAGGTTTGCCATTG+CGG | + | chr3_4:3930668-3930687 | Msa0486140:CDS | 50.0% | |
| CAACCGCAATGGCAAACCTT+TGG | - | chr3_4:3930674-3930693 | None:intergenic | 50.0% | |
| TTGGATGGCAACAACCGCAA+TGG | - | chr3_4:3930685-3930704 | None:intergenic | 50.0% | |
| !! | ACATGGAGAAGTACCGGTAC+CGG | - | chr3_4:3931573-3931592 | None:intergenic | 50.0% |
| TGAATGTAAGGCGGGTCTAC+AGG | + | chr3_4:3931882-3931901 | Msa0486140:intron | 50.0% | |
| GAATGTAAGGCGGGTCTACA+GGG | + | chr3_4:3931883-3931902 | Msa0486140:intron | 50.0% | |
| GACGACCTTCATTCGTATGC+TGG | + | chr3_4:3932293-3932312 | Msa0486140:CDS | 50.0% | |
| CCGGCCTGAATAAAAGGAGA+AGG | - | chr3_4:3932377-3932396 | None:intergenic | 50.0% | |
| AGATGTCTGCAGGCTGTTGT+AGG | - | chr3_4:3933330-3933349 | None:intergenic | 50.0% | |
| ACCCAACTAATTTCCGCCCA+AGG | + | chr3_4:3933753-3933772 | Msa0486140:CDS | 50.0% | |
| ACCAAACCAAGCACTTGCCC+CGG | - | chr3_4:3929596-3929615 | None:intergenic | 55.0% | |
| !! | GGGCAAGTGCTTGGTTTGGT+TGG | + | chr3_4:3929596-3929615 | Msa0486140:CDS | 55.0% |
| AGGGCGAACCACAAAGAAGG+CGG | - | chr3_4:3930000-3930019 | None:intergenic | 55.0% | |
| CGCCCTTAGCTGCCTAATTG+CGG | + | chr3_4:3930014-3930033 | Msa0486140:intron | 55.0% | |
| TGTGTTGGGTGTGAAAGGGG+TGG | + | chr3_4:3930076-3930095 | Msa0486140:intron | 55.0% | |
| TTTCAGGGGGTGAGCTCCAA+AGG | + | chr3_4:3930655-3930674 | Msa0486140:CDS | 55.0% | |
| GGTCATTGCTCAGGCCCAAT+AGG | + | chr3_4:3930784-3930803 | Msa0486140:CDS | 55.0% | |
| !! | ATAGGTACCGGTACGGTACC+CGG | + | chr3_4:3931255-3931274 | Msa0486140:intron | 55.0% |
| TACGGTACCCGGTATGGGTA+CGG | + | chr3_4:3931266-3931285 | Msa0486140:intron | 55.0% | |
| ACAGGTACCCGTACCCATAC+CGG | - | chr3_4:3931277-3931296 | None:intergenic | 55.0% | |
| ACGAGTACCATACGCGTACC+CGG | + | chr3_4:3931551-3931570 | Msa0486140:intron | 55.0% | |
| !! | CATGGAGAAGTACCGGTACC+GGG | - | chr3_4:3931572-3931591 | None:intergenic | 55.0% |
| CTAGGTTGCAGAGACTCCAC+AGG | + | chr3_4:3932125-3932144 | Msa0486140:intron | 55.0% | |
| ATGCTGGGTGAGAATGGGAC+AGG | + | chr3_4:3932267-3932286 | Msa0486140:CDS | 55.0% | |
| GGGGGTGAGTGTATGCATCA+CGG | - | chr3_4:3932529-3932548 | None:intergenic | 55.0% | |
| !! | ATTGCAGGTTGCCGGTTCCC+AGG | + | chr3_4:3929570-3929589 | Msa0486140:intron | 60.0% |
| TGTGCAAGGGAATGTGGGGC+AGG | + | chr3_4:3930542-3930561 | Msa0486140:CDS | 60.0% | |
| TACCGGTACGGTACCCGGTA+TGG | + | chr3_4:3931260-3931279 | Msa0486140:intron | 60.0% | |
| ACCGGTACGGTACCCGGTAT+GGG | + | chr3_4:3931261-3931280 | Msa0486140:intron | 60.0% | |
| ! | ACCCATACCGGGTACCGTAC+CGG | - | chr3_4:3931265-3931284 | None:intergenic | 60.0% |
| ACGGTACCCGGTATGGGTAC+GGG | + | chr3_4:3931267-3931286 | Msa0486140:intron | 60.0% | |
| CAGGTACCCGTACCCATACC+GGG | - | chr3_4:3931276-3931295 | None:intergenic | 60.0% | |
| ACCATACGCGTACCCGGTAC+CGG | + | chr3_4:3931557-3931576 | Msa0486140:intron | 60.0% | |
| GGCGGGTCTACAGGGTAGTA+AGG | + | chr3_4:3931891-3931910 | Msa0486140:intron | 60.0% | |
| GACTCCACAGGAAACTGCCG+AGG | + | chr3_4:3932137-3932156 | Msa0486140:CDS | 60.0% | |
| GCTTCCTCGGCAGTTTCCTG+TGG | - | chr3_4:3932144-3932163 | None:intergenic | 60.0% | |
| GCCGGGGCAAGTGCTTGGTT+TGG | + | chr3_4:3929592-3929611 | Msa0486140:CDS | 65.0% | |
| GCAGGAACCGCCTGATTGGC+AGG | + | chr3_4:3929782-3929801 | Msa0486140:intron | 65.0% | |
| ! | ACCGGTACCGGGTACGCGTA+TGG | - | chr3_4:3931561-3931580 | None:intergenic | 65.0% |
| !! | CAGGTTGCCGGTTCCCAGGC+CGG | + | chr3_4:3929574-3929593 | Msa0486140:intron | 70.0% |
| !! | AGGTTGCCGGTTCCCAGGCC+GGG | + | chr3_4:3929575-3929594 | Msa0486140:intron | 70.0% |
| ACTTGCCCCGGCCTGGGAAC+CGG | - | chr3_4:3929584-3929603 | None:intergenic | 70.0% | |
| CCAAGCACTTGCCCCGGCCT+GGG | - | chr3_4:3929590-3929609 | None:intergenic | 70.0% | |
| ACCAAGCACTTGCCCCGGCC+TGG | - | chr3_4:3929591-3929610 | None:intergenic | 70.0% | |
| !! | GGTTGCCGGTTCCCAGGCCG+GGG | + | chr3_4:3929576-3929595 | Msa0486140:intron | 75.0% |
| CCCAGGCCGGGGCAAGTGCT+TGG | + | chr3_4:3929587-3929606 | Msa0486140:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 3928766 | 3934244 | 3928766 | ID=Msa0486140;Name=Msa0486140 |
| chr3_4 | mRNA | 3928766 | 3934244 | 3928766 | ID=Msa0486140-mRNA-1;Parent=Msa0486140;Name=Msa0486140-mRNA-1;_AED=0.16;_eAED=0.16;_QI=156|1|1|1|0.76|0.71|14|269|606 |
| chr3_4 | exon | 3928766 | 3928913 | 3928766 | ID=Msa0486140-mRNA-1:exon:1482;Parent=Msa0486140-mRNA-1 |
| chr3_4 | exon | 3929017 | 3929127 | 3929017 | ID=Msa0486140-mRNA-1:exon:1483;Parent=Msa0486140-mRNA-1 |
| chr3_4 | exon | 3929211 | 3929296 | 3929211 | ID=Msa0486140-mRNA-1:exon:1484;Parent=Msa0486140-mRNA-1 |
| chr3_4 | exon | 3929390 | 3929487 | 3929390 | ID=Msa0486140-mRNA-1:exon:1485;Parent=Msa0486140-mRNA-1 |
| chr3_4 | exon | 3929577 | 3929694 | 3929577 | ID=Msa0486140-mRNA-1:exon:1486;Parent=Msa0486140-mRNA-1 |
| chr3_4 | exon | 3929786 | 3929875 | 3929786 | ID=Msa0486140-mRNA-1:exon:1487;Parent=Msa0486140-mRNA-1 |
| chr3_4 | exon | 3930501 | 3930805 | 3930501 | ID=Msa0486140-mRNA-1:exon:1488;Parent=Msa0486140-mRNA-1 |
| chr3_4 | exon | 3930924 | 3931119 | 3930924 | ID=Msa0486140-mRNA-1:exon:1489;Parent=Msa0486140-mRNA-1 |
| chr3_4 | exon | 3932129 | 3932314 | 3932129 | ID=Msa0486140-mRNA-1:exon:1490;Parent=Msa0486140-mRNA-1 |
| chr3_4 | exon | 3932392 | 3932664 | 3932392 | ID=Msa0486140-mRNA-1:exon:1491;Parent=Msa0486140-mRNA-1 |
| chr3_4 | exon | 3933337 | 3933582 | 3933337 | ID=Msa0486140-mRNA-1:exon:1492;Parent=Msa0486140-mRNA-1 |
| chr3_4 | exon | 3933728 | 3933863 | 3933728 | ID=Msa0486140-mRNA-1:exon:1493;Parent=Msa0486140-mRNA-1 |
| chr3_4 | exon | 3933957 | 3933992 | 3933957 | ID=Msa0486140-mRNA-1:exon:1494;Parent=Msa0486140-mRNA-1 |
| chr3_4 | exon | 3934028 | 3934244 | 3934028 | ID=Msa0486140-mRNA-1:exon:1495;Parent=Msa0486140-mRNA-1 |
| chr3_4 | five_prime_UTR | 3928766 | 3928913 | 3928766 | ID=Msa0486140-mRNA-1:five_prime_utr;Parent=Msa0486140-mRNA-1 |
| chr3_4 | five_prime_UTR | 3929017 | 3929024 | 3929017 | ID=Msa0486140-mRNA-1:five_prime_utr;Parent=Msa0486140-mRNA-1 |
| chr3_4 | CDS | 3929025 | 3929127 | 3929025 | ID=Msa0486140-mRNA-1:cds;Parent=Msa0486140-mRNA-1 |
| chr3_4 | CDS | 3929211 | 3929296 | 3929211 | ID=Msa0486140-mRNA-1:cds;Parent=Msa0486140-mRNA-1 |
| chr3_4 | CDS | 3929390 | 3929487 | 3929390 | ID=Msa0486140-mRNA-1:cds;Parent=Msa0486140-mRNA-1 |
| chr3_4 | CDS | 3929577 | 3929694 | 3929577 | ID=Msa0486140-mRNA-1:cds;Parent=Msa0486140-mRNA-1 |
| chr3_4 | CDS | 3929786 | 3929875 | 3929786 | ID=Msa0486140-mRNA-1:cds;Parent=Msa0486140-mRNA-1 |
| chr3_4 | CDS | 3930501 | 3930805 | 3930501 | ID=Msa0486140-mRNA-1:cds;Parent=Msa0486140-mRNA-1 |
| chr3_4 | CDS | 3930924 | 3931119 | 3930924 | ID=Msa0486140-mRNA-1:cds;Parent=Msa0486140-mRNA-1 |
| chr3_4 | CDS | 3932129 | 3932314 | 3932129 | ID=Msa0486140-mRNA-1:cds;Parent=Msa0486140-mRNA-1 |
| chr3_4 | CDS | 3932392 | 3932664 | 3932392 | ID=Msa0486140-mRNA-1:cds;Parent=Msa0486140-mRNA-1 |
| chr3_4 | CDS | 3933337 | 3933582 | 3933337 | ID=Msa0486140-mRNA-1:cds;Parent=Msa0486140-mRNA-1 |
| chr3_4 | CDS | 3933728 | 3933847 | 3933728 | ID=Msa0486140-mRNA-1:cds;Parent=Msa0486140-mRNA-1 |
| chr3_4 | three_prime_UTR | 3933848 | 3933863 | 3933848 | ID=Msa0486140-mRNA-1:three_prime_utr;Parent=Msa0486140-mRNA-1 |
| chr3_4 | three_prime_UTR | 3933957 | 3933992 | 3933957 | ID=Msa0486140-mRNA-1:three_prime_utr;Parent=Msa0486140-mRNA-1 |
| chr3_4 | three_prime_UTR | 3934028 | 3934244 | 3934028 | ID=Msa0486140-mRNA-1:three_prime_utr;Parent=Msa0486140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
