Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183320 | XP_013470342.1 | 98.003 | 751 | 10 | 2 | 1 | 749 | 1 | 748 | 0.0 | 1526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183320 | sp|A0A178VBJ0|APSR1_ARATH | 30.169 | 474 | 283 | 9 | 271 | 730 | 199 | 638 | 1.15e-56 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183320 | A0A072W2C8 | 98.003 | 751 | 10 | 2 | 1 | 749 | 1 | 748 | 0.0 | 1526 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044520 | Msa0183320 | 0.800920 | 1.149242e-48 | -8.615850e-47 |
| Msa0183320 | Msa1428240 | 0.860148 | 2.527227e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183320 | MtrunA17_Chr1g0211271 | 98.003 | 751 | 10 | 2 | 1 | 749 | 1 | 748 | 0.0 | 1526 |
| Msa0183320 | MtrunA17_Chr4g0072011 | 29.870 | 693 | 369 | 24 | 1 | 607 | 1 | 662 | 6.97e-64 | 227 |
| Msa0183320 | MtrunA17_Chr3g0118401 | 31.836 | 512 | 265 | 15 | 173 | 606 | 176 | 681 | 3.78e-60 | 217 |
| Msa0183320 | MtrunA17_Chr5g0405741 | 27.778 | 468 | 308 | 7 | 272 | 733 | 204 | 647 | 6.31e-54 | 197 |
| Msa0183320 | MtrunA17_Chr5g0440551 | 35.165 | 364 | 202 | 6 | 272 | 608 | 311 | 667 | 1.80e-53 | 197 |
| Msa0183320 | MtrunA17_Chr8g0335341 | 26.029 | 753 | 463 | 21 | 1 | 707 | 1 | 705 | 1.84e-49 | 185 |
| Msa0183320 | MtrunA17_Chr3g0124841 | 27.802 | 464 | 307 | 8 | 268 | 717 | 450 | 899 | 1.56e-48 | 184 |
| Msa0183320 | MtrunA17_Chr3g0139411 | 25.256 | 586 | 394 | 14 | 159 | 738 | 164 | 711 | 3.01e-45 | 173 |
| Msa0183320 | MtrunA17_Chr2g0298171 | 36.111 | 288 | 169 | 4 | 274 | 550 | 534 | 817 | 5.85e-43 | 167 |
| Msa0183320 | MtrunA17_Chr5g0448571 | 28.190 | 525 | 329 | 13 | 173 | 671 | 237 | 739 | 5.90e-43 | 167 |
| Msa0183320 | MtrunA17_Chr7g0250681 | 27.310 | 487 | 312 | 11 | 235 | 707 | 367 | 825 | 6.03e-43 | 167 |
| Msa0183320 | MtrunA17_Chr2g0331821 | 27.074 | 458 | 301 | 10 | 274 | 723 | 322 | 754 | 4.38e-42 | 164 |
| Msa0183320 | MtrunA17_Chr3g0130761 | 26.761 | 568 | 362 | 13 | 173 | 717 | 238 | 774 | 1.55e-37 | 150 |
| Msa0183320 | MtrunA17_Chr4g0004471 | 26.201 | 458 | 290 | 13 | 273 | 717 | 124 | 546 | 6.35e-35 | 140 |
| Msa0183320 | MtrunA17_Chr2g0303521 | 25.561 | 446 | 300 | 7 | 271 | 712 | 207 | 624 | 2.35e-32 | 133 |
| Msa0183320 | MtrunA17_Chr3g0143731 | 28.286 | 350 | 213 | 8 | 276 | 615 | 279 | 600 | 3.82e-31 | 130 |
| Msa0183320 | MtrunA17_Chr8g0382551 | 28.452 | 478 | 245 | 17 | 1 | 422 | 1 | 437 | 1.71e-28 | 119 |
| Msa0183320 | MtrunA17_Chr8g0382541 | 30.769 | 169 | 113 | 2 | 448 | 616 | 1 | 165 | 4.43e-19 | 87.4 |
| Msa0183320 | MtrunA17_Chr1g0208081 | 49.412 | 85 | 43 | 0 | 364 | 448 | 1 | 85 | 7.58e-18 | 80.1 |
| Msa0183320 | MtrunA17_Chr4g0052471 | 28.061 | 196 | 131 | 5 | 276 | 468 | 8 | 196 | 7.67e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183320 | AT4G30130.3 | 31.805 | 676 | 357 | 23 | 1 | 607 | 1 | 641 | 1.24e-63 | 226 |
| Msa0183320 | AT4G30130.1 | 31.805 | 676 | 357 | 23 | 1 | 607 | 1 | 641 | 1.24e-63 | 226 |
| Msa0183320 | AT1G21740.1 | 29.921 | 508 | 327 | 7 | 222 | 717 | 451 | 941 | 7.42e-59 | 216 |
| Msa0183320 | AT2G27090.2 | 27.285 | 722 | 377 | 22 | 1 | 621 | 1 | 675 | 6.15e-58 | 210 |
| Msa0183320 | AT2G27090.1 | 27.285 | 722 | 377 | 22 | 1 | 621 | 1 | 675 | 6.15e-58 | 210 |
| Msa0183320 | AT3G51290.3 | 30.169 | 474 | 283 | 9 | 271 | 730 | 199 | 638 | 1.17e-57 | 207 |
| Msa0183320 | AT3G51290.2 | 29.959 | 484 | 291 | 9 | 271 | 740 | 199 | 648 | 6.89e-57 | 208 |
| Msa0183320 | AT3G51290.1 | 29.814 | 483 | 284 | 11 | 262 | 730 | 191 | 632 | 4.59e-54 | 197 |
| Msa0183320 | AT4G39790.1 | 36.212 | 359 | 194 | 7 | 271 | 600 | 250 | 602 | 2.68e-53 | 196 |
| Msa0183320 | AT1G02110.1 | 26.471 | 748 | 446 | 18 | 1 | 707 | 1 | 685 | 3.11e-53 | 196 |
| Msa0183320 | AT2G19090.1 | 35.162 | 401 | 216 | 8 | 274 | 656 | 387 | 761 | 1.67e-52 | 196 |
| Msa0183320 | AT1G77500.1 | 29.128 | 436 | 285 | 5 | 272 | 707 | 449 | 860 | 2.84e-51 | 192 |
| Msa0183320 | AT4G35240.4 | 26.667 | 615 | 326 | 18 | 169 | 718 | 274 | 828 | 1.23e-47 | 182 |
| Msa0183320 | AT4G35240.3 | 26.667 | 615 | 326 | 18 | 169 | 718 | 274 | 828 | 1.23e-47 | 182 |
| Msa0183320 | AT4G35240.2 | 26.667 | 615 | 326 | 18 | 169 | 718 | 274 | 828 | 1.45e-47 | 182 |
| Msa0183320 | AT4G35240.1 | 26.667 | 615 | 326 | 18 | 169 | 718 | 274 | 828 | 1.45e-47 | 182 |
| Msa0183320 | AT4G30130.4 | 32.946 | 516 | 278 | 18 | 1 | 467 | 1 | 497 | 2.55e-45 | 171 |
| Msa0183320 | AT4G30130.2 | 32.946 | 516 | 278 | 18 | 1 | 467 | 1 | 497 | 2.55e-45 | 171 |
| Msa0183320 | AT3G60320.1 | 27.536 | 483 | 316 | 7 | 236 | 707 | 319 | 778 | 1.06e-40 | 160 |
| Msa0183320 | AT2G17110.1 | 30.064 | 469 | 280 | 8 | 169 | 603 | 179 | 633 | 5.16e-40 | 158 |
| Msa0183320 | AT1G52320.2 | 24.000 | 525 | 344 | 9 | 208 | 722 | 302 | 781 | 4.91e-38 | 152 |
| Msa0183320 | AT1G52320.5 | 24.000 | 525 | 344 | 9 | 208 | 722 | 302 | 781 | 4.91e-38 | 152 |
| Msa0183320 | AT1G52320.1 | 24.000 | 525 | 344 | 9 | 208 | 722 | 279 | 758 | 5.91e-38 | 152 |
| Msa0183320 | AT1G52320.3 | 24.160 | 476 | 320 | 7 | 257 | 722 | 11 | 455 | 4.10e-36 | 142 |
| Msa0183320 | AT1G52320.4 | 24.160 | 476 | 320 | 7 | 257 | 722 | 11 | 455 | 4.10e-36 | 142 |
| Msa0183320 | AT1G20530.1 | 25.714 | 630 | 387 | 16 | 1 | 624 | 1 | 555 | 1.64e-33 | 137 |
| Msa0183320 | AT5G54480.1 | 27.528 | 356 | 217 | 8 | 371 | 721 | 400 | 719 | 1.49e-29 | 125 |
| Msa0183320 | AT2G34670.2 | 23.236 | 581 | 376 | 15 | 158 | 707 | 123 | 664 | 2.05e-28 | 122 |
| Msa0183320 | AT2G34670.1 | 23.555 | 467 | 287 | 15 | 158 | 594 | 123 | 549 | 1.35e-17 | 87.4 |
Find 162 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCACCACAGAGAGATTT+TGG | 0.150155 | 1_4:-72191084 | Msa0183320:CDS |
| AATGATCTATTTGATGATTA+TGG | 0.221454 | 1_4:-72189811 | Msa0183320:CDS |
| ACATTGAATGGATTGCAATT+TGG | 0.234471 | 1_4:-72188541 | Msa0183320:CDS |
| CATTGAATGGATTGCAATTT+GGG | 0.250004 | 1_4:-72188540 | Msa0183320:CDS |
| TCGAGTAAAATTCAACTTCA+TGG | 0.282119 | 1_4:+72188977 | None:intergenic |
| TGGTTTCTGATGGTGTTTGC+TGG | 0.291077 | 1_4:+72191292 | None:intergenic |
| TGTTATTGCATTAATGAGTT+TGG | 0.311748 | 1_4:+72189921 | None:intergenic |
| CCTTATAACTTTCCCTCCTA+AGG | 0.316405 | 1_4:-72191376 | Msa0183320:CDS |
| AATTCCCCTTCATTCTAGTT+TGG | 0.322897 | 1_4:-72190668 | Msa0183320:CDS |
| GAAATTGTTTGAGGAGGTTA+AGG | 0.331317 | 1_4:-72189731 | Msa0183320:intron |
| ATATCGAGGACCATTTCATT+AGG | 0.339597 | 1_4:-72190738 | Msa0183320:CDS |
| TTCATTAGGGCTTATGAGTC+TGG | 0.342761 | 1_4:-72190724 | Msa0183320:CDS |
| TTGAGAAATAAGAATGTTAG+AGG | 0.343032 | 1_4:-72189478 | Msa0183320:CDS |
| GTGAGTGTTACCGTCTTATC+AGG | 0.343110 | 1_4:+72188859 | None:intergenic |
| CCTTAGGAGGGAAAGTTATA+AGG | 0.348068 | 1_4:+72191376 | None:intergenic |
| GATTATGGAGGAATGGATTC+GGG | 0.351284 | 1_4:-72189796 | Msa0183320:CDS |
| TGAAAGATGTGAAAGCTCTT+TGG | 0.355631 | 1_4:-72188822 | Msa0183320:CDS |
| AGGAGATGATGAATTAAGTA+TGG | 0.367089 | 1_4:-72189458 | Msa0183320:CDS |
| GTTGCTTGTGACTCATGTAT+TGG | 0.370767 | 1_4:-72191258 | Msa0183320:CDS |
| TTCAATAGTTCAACAATTTG+AGG | 0.371023 | 1_4:+72189325 | None:intergenic |
| TATCGAGGACCATTTCATTA+GGG | 0.384897 | 1_4:-72190737 | Msa0183320:CDS |
| TCGTGAAGAAGAATGCTTAA+TGG | 0.386241 | 1_4:-72188653 | Msa0183320:CDS |
| CTCTGTGGTGAAGGCATTGA+AGG | 0.387609 | 1_4:+72191093 | None:intergenic |
| TGATTATGGAGGAATGGATT+CGG | 0.388164 | 1_4:-72189797 | Msa0183320:CDS |
| TCCACTTCCTCCTCTAACTC+TGG | 0.397576 | 1_4:+72190955 | None:intergenic |
| AGGGCAGTGAGGGAGGAAGA+AGG | 0.402646 | 1_4:-72190982 | Msa0183320:CDS |
| CCAATGCCATTTCAAGTCAA+TGG | 0.408523 | 1_4:-72188934 | Msa0183320:CDS |
| GGGCAGTGAGGGAGGAAGAA+GGG | 0.421828 | 1_4:-72190981 | Msa0183320:CDS |
| GGCGGCCCATTGACTTGAAA+TGG | 0.422222 | 1_4:+72188928 | None:intergenic |
| TATGAAGGATTCTTCAAGTT+GGG | 0.435429 | 1_4:-72189845 | Msa0183320:CDS |
| CTCAGAGTCTTCTGAGGAAG+AGG | 0.436803 | 1_4:-72191226 | Msa0183320:CDS |
| CTCAGAAGACTCTGAGGTTG+TGG | 0.437092 | 1_4:+72191233 | None:intergenic |
| TCCAGAGTTAGAGGAGGAAG+TGG | 0.438913 | 1_4:-72190956 | Msa0183320:CDS |
| AATGGATAAAAGTGATTACT+TGG | 0.441015 | 1_4:-72188635 | Msa0183320:CDS |
| TCCCCTTCATTCTAGTTTGG+AGG | 0.441439 | 1_4:-72190665 | Msa0183320:CDS |
| GTTAGAGGAGGAAGTGGAAA+GGG | 0.441445 | 1_4:-72190950 | Msa0183320:CDS |
| GGAGAAGGGTCAAGACCCTT+AGG | 0.446422 | 1_4:+72191360 | None:intergenic |
| AGAAGGGATTCCAGAGTTAG+AGG | 0.450891 | 1_4:-72190965 | Msa0183320:CDS |
| TCTATTAGCCTCAAGCATCT+TGG | 0.450939 | 1_4:+72190690 | None:intergenic |
| ATGTGGCTAATGAAAATGTT+GGG | 0.452073 | 1_4:-72190828 | Msa0183320:CDS |
| AGCAACTCTCTCCCTTCTGC+AGG | 0.453953 | 1_4:+72190775 | None:intergenic |
| CATGGAAGTCCATGTCATCT+AGG | 0.456422 | 1_4:-72189900 | Msa0183320:CDS |
| GCAATCATCATGCAAGAGTC+TGG | 0.456649 | 1_4:-72189878 | Msa0183320:CDS |
| AAGAATAATAAAGAAGGTGG+AGG | 0.464612 | 1_4:-72190889 | Msa0183320:CDS |
| TCTGGCCTCATACTGTCAAA+AGG | 0.466622 | 1_4:+72191045 | None:intergenic |
| AGTGAAAATAGTGAGAAAGC+TGG | 0.468649 | 1_4:-72188442 | Msa0183320:CDS |
| TTGCAATCAATCTCGTGGAT+TGG | 0.469345 | 1_4:-72189115 | Msa0183320:CDS |
| AAGGGTAGAACTTGAGCATA+AGG | 0.470394 | 1_4:-72190932 | Msa0183320:CDS |
| ACTCATAAGCCCTAATGAAA+TGG | 0.472464 | 1_4:+72190728 | None:intergenic |
| CTTATAACTTTCCCTCCTAA+GGG | 0.473646 | 1_4:-72191375 | Msa0183320:CDS |
| TGATTGCAAAATTTATCGTA+CGG | 0.475042 | 1_4:+72189129 | None:intergenic |
| TTGAAGCCGAGCTTCATCAT+TGG | 0.475679 | 1_4:-72189080 | Msa0183320:CDS |
| GGAAGTCATTTATTAACCTT+AGG | 0.476815 | 1_4:-72189775 | Msa0183320:CDS |
| TTTCCTCCAAACTAGAATGA+AGG | 0.477927 | 1_4:+72190662 | None:intergenic |
| GAGAAAACTTGAGGTAGAGA+AGG | 0.480533 | 1_4:-72188602 | Msa0183320:CDS |
| CAAATTGTTGAACTATTGAA+AGG | 0.480895 | 1_4:-72189322 | Msa0183320:CDS |
| CAATGCCATTTCAAGTCAAT+GGG | 0.483470 | 1_4:-72188933 | Msa0183320:CDS |
| AGATCTGTATGCTGGGATCT+TGG | 0.483601 | 1_4:-72189413 | Msa0183320:CDS |
| ATTTGATGATTATGGAGGAA+TGG | 0.485602 | 1_4:-72189803 | Msa0183320:CDS |
| TAGGGCTTATGAGTCTGGTA+AGG | 0.488409 | 1_4:-72190719 | Msa0183320:CDS |
| GATTTAGATAGAAGATATGA+TGG | 0.488627 | 1_4:-72188745 | Msa0183320:CDS |
| TGATGCATAGGCATATTCAT+AGG | 0.490912 | 1_4:+72191132 | None:intergenic |
| GAATTCAGATGATGATTTGA+GGG | 0.492691 | 1_4:-72191001 | Msa0183320:CDS |
| TGATTTGAGGGCAGTGAGGG+AGG | 0.493471 | 1_4:-72190989 | Msa0183320:CDS |
| GATATGAAAGATCTGTATGC+TGG | 0.494737 | 1_4:-72189421 | Msa0183320:CDS |
| GATTGCAAAATTTATCGTAC+GGG | 0.498032 | 1_4:+72189130 | None:intergenic |
| GAGAAGAATAATAAAGAAGG+TGG | 0.501102 | 1_4:-72190892 | Msa0183320:CDS |
| ATGGGAAAAGAAATTGTTTG+AGG | 0.502236 | 1_4:-72189740 | Msa0183320:CDS |
| ACACAGAGGATGACATTGAA+TGG | 0.505166 | 1_4:-72188553 | Msa0183320:CDS |
| CTATTTGTAGAGAGAGAAAA+CGG | 0.505888 | 1_4:-72191530 | Msa0183320:CDS |
| GTTATAAGGAAAGGTGAAGA+AGG | 0.506368 | 1_4:+72191390 | None:intergenic |
| CCAAAATCTCTCTGTGGTGA+AGG | 0.507180 | 1_4:+72191084 | None:intergenic |
| TACTCGTAATATGCAACGAT+TGG | 0.509042 | 1_4:-72188903 | Msa0183320:CDS |
| TTCCTCCAAACTAGAATGAA+GGG | 0.510602 | 1_4:+72190663 | None:intergenic |
| CCATGCATATAACCTTCCTA+AGG | 0.511382 | 1_4:+72189759 | None:intergenic |
| AATCATCATCTGAATTCCTA+TGG | 0.513102 | 1_4:+72191007 | None:intergenic |
| GGAATTCAGATGATGATTTG+AGG | 0.513548 | 1_4:-72191002 | Msa0183320:CDS |
| CCTTAGGAAGGTTATATGCA+TGG | 0.516989 | 1_4:-72189759 | Msa0183320:CDS |
| CCATTGACTTGAAATGGCAT+TGG | 0.517887 | 1_4:+72188934 | None:intergenic |
| GAAGAGAAGAATAATAAAGA+AGG | 0.518314 | 1_4:-72190895 | Msa0183320:CDS |
| GATGTGGCTAATGAAAATGT+TGG | 0.520032 | 1_4:-72190829 | Msa0183320:CDS |
| TGGTAGCCATTCATAACCTC+TGG | 0.520711 | 1_4:+72191027 | None:intergenic |
| CTGGCCTCATACTGTCAAAA+GGG | 0.522430 | 1_4:+72191046 | None:intergenic |
| AACATTTCGTATATAGAAGA+TGG | 0.524010 | 1_4:-72188418 | Msa0183320:CDS |
| GTCATTTATTAACCTTAGGA+AGG | 0.527369 | 1_4:-72189771 | Msa0183320:CDS |
| GAGGAAGAGGGAGAGAGAGA+AGG | 0.528103 | 1_4:-72191213 | Msa0183320:CDS |
| ACGTAGAAGCTCTGCATGGA+TGG | 0.535242 | 1_4:-72189017 | Msa0183320:CDS |
| TGTTGAAACGGCGAAGGCTG+TGG | 0.535339 | 1_4:-72190851 | Msa0183320:CDS |
| AAATTGTTGAACTATTGAAA+GGG | 0.537939 | 1_4:-72189321 | Msa0183320:intron |
| GTGAAAATAGTGAGAAAGCT+GGG | 0.538808 | 1_4:-72188441 | Msa0183320:CDS |
| TCGTTGCATATTACGAGTAA+TGG | 0.540538 | 1_4:+72188907 | None:intergenic |
| TGCACGCCAATGATGAAGCT+CGG | 0.544619 | 1_4:+72189074 | None:intergenic |
| GGAAAAGAAATTGTTTGAGG+AGG | 0.545354 | 1_4:-72189737 | Msa0183320:CDS |
| ATATGAAGGATTCTTCAAGT+TGG | 0.546672 | 1_4:-72189846 | Msa0183320:CDS |
| ACAAGCAACAGATTCATGCT+TGG | 0.548945 | 1_4:+72191272 | None:intergenic |
| CTTAGGAAGGTTATATGCAT+GGG | 0.550042 | 1_4:-72189758 | Msa0183320:CDS |
| GATCTATTTGATGATTATGG+AGG | 0.551469 | 1_4:-72189808 | Msa0183320:CDS |
| TGATGATTTGAGGGCAGTGA+GGG | 0.554612 | 1_4:-72190992 | Msa0183320:CDS |
| GAGGGAGAGAGAGAAGGTGA+AGG | 0.559182 | 1_4:-72191207 | Msa0183320:CDS |
| GGTGTTTGCTGGAGAAACAT+AGG | 0.559934 | 1_4:+72191303 | None:intergenic |
| GGAGGGAAAGTTATAAGGAA+AGG | 0.561620 | 1_4:+72191381 | None:intergenic |
| GATTCATGCTTGGTTTCTGA+TGG | 0.562846 | 1_4:+72191282 | None:intergenic |
| GTTGATGAATGAGAAGGAGA+AGG | 0.565677 | 1_4:+72191345 | None:intergenic |
| TCTGGTGGTTCAAAATATGA+AGG | 0.565683 | 1_4:-72189860 | Msa0183320:CDS |
| CTTATCAGGCAACTTTCGTA+AGG | 0.566150 | 1_4:+72188873 | None:intergenic |
| GAAGGATTCTTCAAGTTGGG+TGG | 0.567665 | 1_4:-72189842 | Msa0183320:CDS |
| GTGTTTGCTGGAGAAACATA+GGG | 0.572296 | 1_4:+72191304 | None:intergenic |
| AGTTGTGAGTGGTGTTGAAA+CGG | 0.573652 | 1_4:-72190863 | Msa0183320:CDS |
| GAAGGGTCAAGACCCTTAGG+AGG | 0.573723 | 1_4:+72191363 | None:intergenic |
| ATATGAAAGATCTGTATGCT+GGG | 0.574932 | 1_4:-72189420 | Msa0183320:CDS |
| AACGGCGAAGGCTGTGGATG+TGG | 0.577941 | 1_4:-72190845 | Msa0183320:CDS |
| ATAAAGAGCAGCAACAGAAG+AGG | 0.579662 | 1_4:-72188789 | Msa0183320:CDS |
| ACGAAAGTTGCCTGATAAGA+CGG | 0.580833 | 1_4:-72188869 | Msa0183320:CDS |
| ATGAGGCCAGAGGTTATGAA+TGG | 0.581936 | 1_4:-72191033 | Msa0183320:CDS |
| TCATAGATCAGAAGAAGAGT+CGG | 0.585891 | 1_4:-72188677 | Msa0183320:CDS |
| AGGTTATGAATGGCTACCAT+AGG | 0.586947 | 1_4:-72191023 | Msa0183320:CDS |
| TCAGAGTCTTCTGAGGAAGA+GGG | 0.587884 | 1_4:-72191225 | Msa0183320:CDS |
| CTCTTCCTCAGAAGACTCTG+AGG | 0.590681 | 1_4:+72191227 | None:intergenic |
| ACATGTGAAGTATTTGACTT+CGG | 0.592384 | 1_4:+72189155 | None:intergenic |
| TCTAGTTTGGAGGAAATCAA+AGG | 0.598376 | 1_4:-72190655 | Msa0183320:intron |
| AGAACTTGAGCATAAGGTGG+TGG | 0.599202 | 1_4:-72190926 | Msa0183320:CDS |
| GTTCTTGATACACCTGCAGA+AGG | 0.604152 | 1_4:-72190787 | Msa0183320:CDS |
| GGCATAGACATATGATGCAT+AGG | 0.605861 | 1_4:+72191120 | None:intergenic |
| AGTTAGAGGAGGAAGTGGAA+AGG | 0.607289 | 1_4:-72190951 | Msa0183320:CDS |
| AACTCATTAATGCAATAACA+TGG | 0.609435 | 1_4:-72189918 | Msa0183320:CDS |
| AGAATAATAAAGAAGGTGGA+GGG | 0.610927 | 1_4:-72190888 | Msa0183320:CDS |
| TTGATGAATGAGAAGGAGAA+GGG | 0.611312 | 1_4:+72191346 | None:intergenic |
| TGATGATTGCCTAGATGACA+TGG | 0.612443 | 1_4:+72189891 | None:intergenic |
| GGTGAAGGCATTGAAGGTGG+TGG | 0.616383 | 1_4:+72191099 | None:intergenic |
| GACTTGAAATGGCATTGGCA+TGG | 0.616911 | 1_4:+72188939 | None:intergenic |
| AGGGCTTATGAGTCTGGTAA+GGG | 0.622828 | 1_4:-72190718 | Msa0183320:CDS |
| TTCTTGATACACCTGCAGAA+GGG | 0.629508 | 1_4:-72190786 | Msa0183320:CDS |
| TCCTCCAAACTAGAATGAAG+GGG | 0.630374 | 1_4:+72190664 | None:intergenic |
| AGAAGATGGTGGTTGCAATG+TGG | 0.630616 | 1_4:-72188404 | Msa0183320:CDS |
| ACAGTCGTGGAAAATCATGT+TGG | 0.631345 | 1_4:-72189208 | Msa0183320:CDS |
| CACAACCTCAGAGTCTTCTG+AGG | 0.635527 | 1_4:-72191232 | Msa0183320:CDS |
| GTGTGTTGCCTCAAAACTAG+AGG | 0.637521 | 1_4:-72191571 | Msa0183320:CDS |
| TGAAGCTTTGAAAGATATCG+AGG | 0.638509 | 1_4:-72190752 | Msa0183320:CDS |
| TGTGGTGAAGGCATTGAAGG+TGG | 0.638795 | 1_4:+72191096 | None:intergenic |
| TGCATGTAGAAATACTCACT+TGG | 0.642692 | 1_4:+72191159 | None:intergenic |
| GACACTGAGGAGAAAACTTG+AGG | 0.643003 | 1_4:-72188611 | Msa0183320:CDS |
| AGGGATTCCAGAGTTAGAGG+AGG | 0.644039 | 1_4:-72190962 | Msa0183320:CDS |
| TGTGGCTAATGAAAATGTTG+GGG | 0.649399 | 1_4:-72190827 | Msa0183320:CDS |
| AATGCAGCTTAACACAGTCG+TGG | 0.652278 | 1_4:-72189221 | Msa0183320:intron |
| ATTGCAAAATTTATCGTACG+GGG | 0.653024 | 1_4:+72189131 | None:intergenic |
| ATGATGATTTGAGGGCAGTG+AGG | 0.653507 | 1_4:-72190993 | Msa0183320:CDS |
| ATTTCGTATATAGAAGATGG+TGG | 0.654950 | 1_4:-72188415 | Msa0183320:CDS |
| GCATACGTAGAAGCTCTGCA+TGG | 0.662202 | 1_4:-72189021 | Msa0183320:CDS |
| ATCATCATGCAAGAGTCTGG+TGG | 0.664887 | 1_4:-72189875 | Msa0183320:CDS |
| GGGTGTGACCAAGATGCTTG+AGG | 0.666909 | 1_4:-72190698 | Msa0183320:CDS |
| AAGGGTCAAGACCCTTAGGA+GGG | 0.667943 | 1_4:+72191364 | None:intergenic |
| GAGTGGTGTTGAAACGGCGA+AGG | 0.672115 | 1_4:-72190857 | Msa0183320:CDS |
| GGTGGAGGGAAAGTTGTGAG+TGG | 0.676621 | 1_4:-72190874 | Msa0183320:CDS |
| TTGCATATTACGAGTAATGG+CGG | 0.677646 | 1_4:+72188910 | None:intergenic |
| TCCCAACCAAAATCTCTCTG+TGG | 0.682232 | 1_4:+72191078 | None:intergenic |
| GGTAGAACTTGAGCATAAGG+TGG | 0.683792 | 1_4:-72190929 | Msa0183320:CDS |
| CTTAGGCTGGAGATAGCACG+CGG | 0.690858 | 1_4:-72189528 | Msa0183320:intron |
| TTGCAAAATTTATCGTACGG+GGG | 0.706211 | 1_4:+72189132 | None:intergenic |
| GTGGCTAATGAAAATGTTGG+GGG | 0.711834 | 1_4:-72190826 | Msa0183320:CDS |
| GTGATTACTTGGAGACACTG+AGG | 0.718942 | 1_4:-72188624 | Msa0183320:CDS |
| TGGCTAATGAAAATGTTGGG+GGG | 0.721992 | 1_4:-72190825 | Msa0183320:CDS |
| GTTGCATGCAAGAAACACAG+AGG | 0.798241 | 1_4:-72188567 | Msa0183320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAGAAATTCATTCTAAA+AGG | - | chr1_4:72190660-72190679 | Msa0183320:CDS | 15.0% |
| !! | TGATTTAATTGTAGTGAATA+AGG | - | chr1_4:72189718-72189737 | Msa0183320:intron | 20.0% |
| !!! | AATGATCTATTTGATGATTA+TGG | - | chr1_4:72190140-72190159 | Msa0183320:intron | 20.0% |
| !! | AAATTGTTGAACTATTGAAA+GGG | - | chr1_4:72190630-72190649 | Msa0183320:intron | 20.0% |
| ! | GAAGAGAAGAATAATAAAGA+AGG | - | chr1_4:72189056-72189075 | Msa0183320:CDS | 25.0% |
| ! | CAACATACTCAACTATAATT+AGG | + | chr1_4:72189327-72189346 | None:intergenic | 25.0% |
| ! | AATAAGTAATCATCATACCT+TGG | + | chr1_4:72189387-72189406 | None:intergenic | 25.0% |
| !! | ATTTGGTTCATGTAATATGT+AGG | - | chr1_4:72189506-72189525 | Msa0183320:CDS | 25.0% |
| !! | AAGTTGAATTAGCTTATGTA+AGG | - | chr1_4:72189533-72189552 | Msa0183320:intron | 25.0% |
| !! | AGTTGAATTAGCTTATGTAA+GGG | - | chr1_4:72189534-72189553 | Msa0183320:intron | 25.0% |
| ! | TTCACTACAATTAAATCAAC+AGG | + | chr1_4:72189716-72189735 | None:intergenic | 25.0% |
| ! | TAGATTAAAACTCCTTAATC+TGG | + | chr1_4:72189871-72189890 | None:intergenic | 25.0% |
| !! | AACTTTTAATCATGGATACA+TGG | + | chr1_4:72189978-72189997 | None:intergenic | 25.0% |
| !! | ATGGTTCAAACTTTTAATCA+TGG | + | chr1_4:72189986-72190005 | None:intergenic | 25.0% |
| ! | TGTTATTGCATTAATGAGTT+TGG | + | chr1_4:72190033-72190052 | None:intergenic | 25.0% |
| ! | AACTCATTAATGCAATAACA+TGG | - | chr1_4:72190033-72190052 | Msa0183320:intron | 25.0% |
| ! | TTCGTCATAAACAGAAAATA+TGG | + | chr1_4:72190279-72190298 | None:intergenic | 25.0% |
| ! | AATGTTAGCAATATATGTCA+AGG | + | chr1_4:72190388-72190407 | None:intergenic | 25.0% |
| ! | TTGAGAAATAAGAATGTTAG+AGG | - | chr1_4:72190473-72190492 | Msa0183320:intron | 25.0% |
| ! | TTCAATAGTTCAACAATTTG+AGG | + | chr1_4:72190629-72190648 | None:intergenic | 25.0% |
| ! | CAAATTGTTGAACTATTGAA+AGG | - | chr1_4:72190629-72190648 | Msa0183320:intron | 25.0% |
| ! | TGATTGCAAAATTTATCGTA+CGG | + | chr1_4:72190825-72190844 | None:intergenic | 25.0% |
| ! | GATTTAGATAGAAGATATGA+TGG | - | chr1_4:72191206-72191225 | Msa0183320:CDS | 25.0% |
| ! | AATGGATAAAAGTGATTACT+TGG | - | chr1_4:72191316-72191335 | Msa0183320:CDS | 25.0% |
| ! | AACATTTCGTATATAGAAGA+TGG | - | chr1_4:72191533-72191552 | Msa0183320:CDS | 25.0% |
| CTATTTGTAGAGAGAGAAAA+CGG | - | chr1_4:72188421-72188440 | Msa0183320:CDS | 30.0% | |
| !!! | TTTTCAGTTGATGAATGAGA+AGG | + | chr1_4:72188615-72188634 | None:intergenic | 30.0% |
| AATCATCATCTGAATTCCTA+TGG | + | chr1_4:72188947-72188966 | None:intergenic | 30.0% | |
| GAATTCAGATGATGATTTGA+GGG | - | chr1_4:72188950-72188969 | Msa0183320:CDS | 30.0% | |
| GAGAAGAATAATAAAGAAGG+TGG | - | chr1_4:72189059-72189078 | Msa0183320:CDS | 30.0% | |
| AAGAATAATAAAGAAGGTGG+AGG | - | chr1_4:72189062-72189081 | Msa0183320:CDS | 30.0% | |
| AGAATAATAAAGAAGGTGGA+GGG | - | chr1_4:72189063-72189082 | Msa0183320:CDS | 30.0% | |
| ATGTGGCTAATGAAAATGTT+GGG | - | chr1_4:72189123-72189142 | Msa0183320:CDS | 30.0% | |
| ! | TTCAACTTTTAACATGTCCA+AGG | - | chr1_4:72189367-72189386 | Msa0183320:CDS | 30.0% |
| ATTACCATTTACCAACACAT+TGG | - | chr1_4:72189404-72189423 | Msa0183320:CDS | 30.0% | |
| ATTTAGTCATATTCCTGCAT+TGG | - | chr1_4:72189458-72189477 | Msa0183320:CDS | 30.0% | |
| TTTAGTCATATTCCTGCATT+GGG | - | chr1_4:72189459-72189478 | Msa0183320:CDS | 30.0% | |
| ! | AATGTGTCAACATTTTTGCA+TGG | + | chr1_4:72189569-72189588 | None:intergenic | 30.0% |
| GTTGACACATTTATTGATCA+TGG | - | chr1_4:72189578-72189597 | Msa0183320:intron | 30.0% | |
| TGTCAGATCTCAAATCAATT+GGG | - | chr1_4:72189602-72189621 | Msa0183320:intron | 30.0% | |
| TAACATGCACTAAATCAACT+CGG | + | chr1_4:72189690-72189709 | None:intergenic | 30.0% | |
| TCTATGCTCTCAAATCAATA+GGG | + | chr1_4:72189833-72189852 | None:intergenic | 30.0% | |
| ATATGAAGGATTCTTCAAGT+TGG | - | chr1_4:72190105-72190124 | Msa0183320:intron | 30.0% | |
| ! | TATGAAGGATTCTTCAAGTT+GGG | - | chr1_4:72190106-72190125 | Msa0183320:intron | 30.0% |
| ! | GATCTATTTGATGATTATGG+AGG | - | chr1_4:72190143-72190162 | Msa0183320:intron | 30.0% |
| ! | ATTTGATGATTATGGAGGAA+TGG | - | chr1_4:72190148-72190167 | Msa0183320:intron | 30.0% |
| GGAAGTCATTTATTAACCTT+AGG | - | chr1_4:72190176-72190195 | Msa0183320:intron | 30.0% | |
| GTCATTTATTAACCTTAGGA+AGG | - | chr1_4:72190180-72190199 | Msa0183320:intron | 30.0% | |
| ATGGGAAAAGAAATTGTTTG+AGG | - | chr1_4:72190211-72190230 | Msa0183320:intron | 30.0% | |
| AGAACAAAACAACAATGTGT+TGG | - | chr1_4:72190331-72190350 | Msa0183320:intron | 30.0% | |
| ATATGTCAAGGAACAAAACA+AGG | + | chr1_4:72190376-72190395 | None:intergenic | 30.0% | |
| AGGAGATGATGAATTAAGTA+TGG | - | chr1_4:72190493-72190512 | Msa0183320:intron | 30.0% | |
| ATATGAAAGATCTGTATGCT+GGG | - | chr1_4:72190531-72190550 | Msa0183320:intron | 30.0% | |
| ! | ACATGTGAAGTATTTGACTT+CGG | + | chr1_4:72190799-72190818 | None:intergenic | 30.0% |
| ATTGCAAAATTTATCGTACG+GGG | + | chr1_4:72190823-72190842 | None:intergenic | 30.0% | |
| GATTGCAAAATTTATCGTAC+GGG | + | chr1_4:72190824-72190843 | None:intergenic | 30.0% | |
| ! | AAATTTTGCAATCAATCTCG+TGG | - | chr1_4:72190831-72190850 | Msa0183320:CDS | 30.0% |
| TCGAGTAAAATTCAACTTCA+TGG | + | chr1_4:72190977-72190996 | None:intergenic | 30.0% | |
| !! | ACATTGAATGGATTGCAATT+TGG | - | chr1_4:72191410-72191429 | Msa0183320:CDS | 30.0% |
| !! | CATTGAATGGATTGCAATTT+GGG | - | chr1_4:72191411-72191430 | Msa0183320:CDS | 30.0% |
| ATTTCGTATATAGAAGATGG+TGG | - | chr1_4:72191536-72191555 | Msa0183320:CDS | 30.0% | |
| !!! | TTCTTCTTCCTCTAGTTTTG+AGG | + | chr1_4:72188391-72188410 | None:intergenic | 35.0% |
| GTTATAAGGAAAGGTGAAGA+AGG | + | chr1_4:72188564-72188583 | None:intergenic | 35.0% | |
| CTTATAACTTTCCCTCCTAA+GGG | - | chr1_4:72188576-72188595 | Msa0183320:CDS | 35.0% | |
| TTGATGAATGAGAAGGAGAA+GGG | + | chr1_4:72188608-72188627 | None:intergenic | 35.0% | |
| TGCATGTAGAAATACTCACT+TGG | + | chr1_4:72188795-72188814 | None:intergenic | 35.0% | |
| TGATGCATAGGCATATTCAT+AGG | + | chr1_4:72188822-72188841 | None:intergenic | 35.0% | |
| ! | TTTACCCTTTTGACAGTATG+AGG | - | chr1_4:72188901-72188920 | Msa0183320:CDS | 35.0% |
| GGAATTCAGATGATGATTTG+AGG | - | chr1_4:72188949-72188968 | Msa0183320:CDS | 35.0% | |
| GATGTGGCTAATGAAAATGT+TGG | - | chr1_4:72189122-72189141 | Msa0183320:CDS | 35.0% | |
| TGTGGCTAATGAAAATGTTG+GGG | - | chr1_4:72189124-72189143 | Msa0183320:CDS | 35.0% | |
| !! | TGAAGCTTTGAAAGATATCG+AGG | - | chr1_4:72189199-72189218 | Msa0183320:CDS | 35.0% |
| ATATCGAGGACCATTTCATT+AGG | - | chr1_4:72189213-72189232 | Msa0183320:CDS | 35.0% | |
| TATCGAGGACCATTTCATTA+GGG | - | chr1_4:72189214-72189233 | Msa0183320:CDS | 35.0% | |
| ACTCATAAGCCCTAATGAAA+TGG | + | chr1_4:72189226-72189245 | None:intergenic | 35.0% | |
| ! | AATTCCCCTTCATTCTAGTT+TGG | - | chr1_4:72189283-72189302 | Msa0183320:intron | 35.0% |
| TTCCTCCAAACTAGAATGAA+GGG | + | chr1_4:72189291-72189310 | None:intergenic | 35.0% | |
| TTTCCTCCAAACTAGAATGA+AGG | + | chr1_4:72189292-72189311 | None:intergenic | 35.0% | |
| ! | TCTAGTTTGGAGGAAATCAA+AGG | - | chr1_4:72189296-72189315 | Msa0183320:intron | 35.0% |
| ! | TGAACCAATGTGTTGGTAAA+TGG | + | chr1_4:72189411-72189430 | None:intergenic | 35.0% |
| ACTAAGATGAACCAATGTGT+TGG | + | chr1_4:72189418-72189437 | None:intergenic | 35.0% | |
| AGACCTGTAGATAGTTGATT+TGG | - | chr1_4:72189489-72189508 | Msa0183320:CDS | 35.0% | |
| GAACCAAATCAACTATCTAC+AGG | + | chr1_4:72189495-72189514 | None:intergenic | 35.0% | |
| CTGTCAGATCTCAAATCAAT+TGG | - | chr1_4:72189601-72189620 | Msa0183320:intron | 35.0% | |
| ! | AGCAACTTTAAAAGGTTGTG+TGG | + | chr1_4:72189808-72189827 | None:intergenic | 35.0% |
| ATAGGGTCAGCAACTTTAAA+AGG | + | chr1_4:72189816-72189835 | None:intergenic | 35.0% | |
| GTCTATGCTCTCAAATCAAT+AGG | + | chr1_4:72189834-72189853 | None:intergenic | 35.0% | |
| GCATGACAAAATTGATACTC+TGG | - | chr1_4:72189928-72189947 | Msa0183320:CDS | 35.0% | |
| ! | CTTTCTGCATTGATATCAGA+TGG | + | chr1_4:72190005-72190024 | None:intergenic | 35.0% |
| TCTGGTGGTTCAAAATATGA+AGG | - | chr1_4:72190091-72190110 | Msa0183320:intron | 35.0% | |
| ! | TGATTATGGAGGAATGGATT+CGG | - | chr1_4:72190154-72190173 | Msa0183320:intron | 35.0% |
| CTTAGGAAGGTTATATGCAT+GGG | - | chr1_4:72190193-72190212 | Msa0183320:intron | 35.0% | |
| GGAAAAGAAATTGTTTGAGG+AGG | - | chr1_4:72190214-72190233 | Msa0183320:intron | 35.0% | |
| GAAATTGTTTGAGGAGGTTA+AGG | - | chr1_4:72190220-72190239 | Msa0183320:intron | 35.0% | |
| GATATGAAAGATCTGTATGC+TGG | - | chr1_4:72190530-72190549 | Msa0183320:intron | 35.0% | |
| GTTAAGCTGCATTTGGAAAA+TGG | + | chr1_4:72190723-72190742 | None:intergenic | 35.0% | |
| TTGCAAAATTTATCGTACGG+GGG | + | chr1_4:72190822-72190841 | None:intergenic | 35.0% | |
| ! | CAATGCCATTTCAAGTCAAT+GGG | - | chr1_4:72191018-72191037 | Msa0183320:CDS | 35.0% |
| TTGCATATTACGAGTAATGG+CGG | + | chr1_4:72191044-72191063 | None:intergenic | 35.0% | |
| TCGTTGCATATTACGAGTAA+TGG | + | chr1_4:72191047-72191066 | None:intergenic | 35.0% | |
| TACTCGTAATATGCAACGAT+TGG | - | chr1_4:72191048-72191067 | Msa0183320:CDS | 35.0% | |
| TGAAAGATGTGAAAGCTCTT+TGG | - | chr1_4:72191129-72191148 | Msa0183320:CDS | 35.0% | |
| TCATAGATCAGAAGAAGAGT+CGG | - | chr1_4:72191274-72191293 | Msa0183320:CDS | 35.0% | |
| TCGTGAAGAAGAATGCTTAA+TGG | - | chr1_4:72191298-72191317 | Msa0183320:CDS | 35.0% | |
| ! | GTACATTTTCTGTGATGCTT+TGG | + | chr1_4:72191471-72191490 | None:intergenic | 35.0% |
| AGTGAAAATAGTGAGAAAGC+TGG | - | chr1_4:72191509-72191528 | Msa0183320:CDS | 35.0% | |
| GTGAAAATAGTGAGAAAGCT+GGG | - | chr1_4:72191510-72191529 | Msa0183320:CDS | 35.0% | |
| GAAAACTGCAACAGCAAAAA+TGG | - | chr1_4:72191569-72191588 | Msa0183320:CDS | 35.0% | |
| GGAGGGAAAGTTATAAGGAA+AGG | + | chr1_4:72188573-72188592 | None:intergenic | 40.0% | |
| CCTTAGGAGGGAAAGTTATA+AGG | + | chr1_4:72188578-72188597 | None:intergenic | 40.0% | |
| CCTTATAACTTTCCCTCCTA+AGG | - | chr1_4:72188575-72188594 | Msa0183320:CDS | 40.0% | |
| ! | GTTGATGAATGAGAAGGAGA+AGG | + | chr1_4:72188609-72188628 | None:intergenic | 40.0% |
| ! | GTGTTTGCTGGAGAAACATA+GGG | + | chr1_4:72188650-72188669 | None:intergenic | 40.0% |
| GATTCATGCTTGGTTTCTGA+TGG | + | chr1_4:72188672-72188691 | None:intergenic | 40.0% | |
| ACAAGCAACAGATTCATGCT+TGG | + | chr1_4:72188682-72188701 | None:intergenic | 40.0% | |
| GTTGCTTGTGACTCATGTAT+TGG | - | chr1_4:72188693-72188712 | Msa0183320:CDS | 40.0% | |
| GGCATAGACATATGATGCAT+AGG | + | chr1_4:72188834-72188853 | None:intergenic | 40.0% | |
| !!! | ACCACAGAGAGATTTTGGTT+GGG | - | chr1_4:72188872-72188891 | Msa0183320:CDS | 40.0% |
| AGGTTATGAATGGCTACCAT+AGG | - | chr1_4:72188928-72188947 | Msa0183320:CDS | 40.0% | |
| AAGGGTAGAACTTGAGCATA+AGG | - | chr1_4:72189019-72189038 | Msa0183320:CDS | 40.0% | |
| ! | AGTTGTGAGTGGTGTTGAAA+CGG | - | chr1_4:72189088-72189107 | Msa0183320:CDS | 40.0% |
| GTGGCTAATGAAAATGTTGG+GGG | - | chr1_4:72189125-72189144 | Msa0183320:CDS | 40.0% | |
| TGGCTAATGAAAATGTTGGG+GGG | - | chr1_4:72189126-72189145 | Msa0183320:CDS | 40.0% | |
| TTCTTGATACACCTGCAGAA+GGG | - | chr1_4:72189165-72189184 | Msa0183320:CDS | 40.0% | |
| TTCATTAGGGCTTATGAGTC+TGG | - | chr1_4:72189227-72189246 | Msa0183320:intron | 40.0% | |
| ! | TCTATTAGCCTCAAGCATCT+TGG | + | chr1_4:72189264-72189283 | None:intergenic | 40.0% |
| TCCTCCAAACTAGAATGAAG+GGG | + | chr1_4:72189290-72189309 | None:intergenic | 40.0% | |
| GCTGACAAATCTCCAATTGA+TGG | - | chr1_4:72189664-72189683 | Msa0183320:intron | 40.0% | |
| AAATCAACTCGGCCATCAAT+TGG | + | chr1_4:72189679-72189698 | None:intergenic | 40.0% | |
| TGAATAAGGAACCCTGATGT+AGG | - | chr1_4:72189732-72189751 | Msa0183320:CDS | 40.0% | |
| GTTGCAACTTTGCCAGATTA+AGG | - | chr1_4:72189856-72189875 | Msa0183320:CDS | 40.0% | |
| TGATGATTGCCTAGATGACA+TGG | + | chr1_4:72190063-72190082 | None:intergenic | 40.0% | |
| ! | GATTATGGAGGAATGGATTC+GGG | - | chr1_4:72190155-72190174 | Msa0183320:intron | 40.0% |
| CCATGCATATAACCTTCCTA+AGG | + | chr1_4:72190195-72190214 | None:intergenic | 40.0% | |
| CCTTAGGAAGGTTATATGCA+TGG | - | chr1_4:72190192-72190211 | Msa0183320:intron | 40.0% | |
| TGTTTGAGGAGGTTAAGGTA+AGG | - | chr1_4:72190225-72190244 | Msa0183320:intron | 40.0% | |
| ! | TTGGTGCTTAACTTCTAGTG+TGG | - | chr1_4:72190350-72190369 | Msa0183320:intron | 40.0% |
| TTCAGTGAATTCCTTGCCTT+AGG | - | chr1_4:72190406-72190425 | Msa0183320:intron | 40.0% | |
| ACAGTCGTGGAAAATCATGT+TGG | - | chr1_4:72190743-72190762 | Msa0183320:CDS | 40.0% | |
| TTGCAATCAATCTCGTGGAT+TGG | - | chr1_4:72190836-72190855 | Msa0183320:CDS | 40.0% | |
| !! | TACGTATGCTTTTTGAGCTG+CGG | + | chr1_4:72190919-72190938 | None:intergenic | 40.0% |
| !! | CCATTGACTTGAAATGGCAT+TGG | + | chr1_4:72191020-72191039 | None:intergenic | 40.0% |
| ! | CCAATGCCATTTCAAGTCAA+TGG | - | chr1_4:72191017-72191036 | Msa0183320:CDS | 40.0% |
| CTTATCAGGCAACTTTCGTA+AGG | + | chr1_4:72191081-72191100 | None:intergenic | 40.0% | |
| ACGAAAGTTGCCTGATAAGA+CGG | - | chr1_4:72191082-72191101 | Msa0183320:CDS | 40.0% | |
| ATAAAGAGCAGCAACAGAAG+AGG | - | chr1_4:72191162-72191181 | Msa0183320:CDS | 40.0% | |
| GAGAAAACTTGAGGTAGAGA+AGG | - | chr1_4:72191349-72191368 | Msa0183320:CDS | 40.0% | |
| ACACAGAGGATGACATTGAA+TGG | - | chr1_4:72191398-72191417 | Msa0183320:CDS | 40.0% | |
| GTGTGTTGCCTCAAAACTAG+AGG | - | chr1_4:72188380-72188399 | Msa0183320:CDS | 45.0% | |
| ! | GGTGTTTGCTGGAGAAACAT+AGG | + | chr1_4:72188651-72188670 | None:intergenic | 45.0% |
| ! | TGGTTTCTGATGGTGTTTGC+TGG | + | chr1_4:72188662-72188681 | None:intergenic | 45.0% |
| ! | TCAGAGTCTTCTGAGGAAGA+GGG | - | chr1_4:72188726-72188745 | Msa0183320:CDS | 45.0% |
| CCAAAATCTCTCTGTGGTGA+AGG | + | chr1_4:72188870-72188889 | None:intergenic | 45.0% | |
| ! | CCTTCACCACAGAGAGATTT+TGG | - | chr1_4:72188867-72188886 | Msa0183320:CDS | 45.0% |
| !! | CACCACAGAGAGATTTTGGT+TGG | - | chr1_4:72188871-72188890 | Msa0183320:CDS | 45.0% |
| TCCCAACCAAAATCTCTCTG+TGG | + | chr1_4:72188876-72188895 | None:intergenic | 45.0% | |
| CTGGCCTCATACTGTCAAAA+GGG | + | chr1_4:72188908-72188927 | None:intergenic | 45.0% | |
| TCTGGCCTCATACTGTCAAA+AGG | + | chr1_4:72188909-72188928 | None:intergenic | 45.0% | |
| ! | TTTTGACAGTATGAGGCCAG+AGG | - | chr1_4:72188908-72188927 | Msa0183320:CDS | 45.0% |
| ATGAGGCCAGAGGTTATGAA+TGG | - | chr1_4:72188918-72188937 | Msa0183320:CDS | 45.0% | |
| TGGTAGCCATTCATAACCTC+TGG | + | chr1_4:72188927-72188946 | None:intergenic | 45.0% | |
| ATGATGATTTGAGGGCAGTG+AGG | - | chr1_4:72188958-72188977 | Msa0183320:CDS | 45.0% | |
| TGATGATTTGAGGGCAGTGA+GGG | - | chr1_4:72188959-72188978 | Msa0183320:CDS | 45.0% | |
| AGAAGGGATTCCAGAGTTAG+AGG | - | chr1_4:72188986-72189005 | Msa0183320:CDS | 45.0% | |
| AGTTAGAGGAGGAAGTGGAA+AGG | - | chr1_4:72189000-72189019 | Msa0183320:CDS | 45.0% | |
| GTTAGAGGAGGAAGTGGAAA+GGG | - | chr1_4:72189001-72189020 | Msa0183320:CDS | 45.0% | |
| GGTAGAACTTGAGCATAAGG+TGG | - | chr1_4:72189022-72189041 | Msa0183320:CDS | 45.0% | |
| AGAACTTGAGCATAAGGTGG+TGG | - | chr1_4:72189025-72189044 | Msa0183320:CDS | 45.0% | |
| TGAAAATGTTGGGGGGCAAA+AGG | - | chr1_4:72189133-72189152 | Msa0183320:CDS | 45.0% | |
| GAAAATGTTGGGGGGCAAAA+GGG | - | chr1_4:72189134-72189153 | Msa0183320:CDS | 45.0% | |
| AAAATGTTGGGGGGCAAAAG+GGG | - | chr1_4:72189135-72189154 | Msa0183320:CDS | 45.0% | |
| GTTCTTGATACACCTGCAGA+AGG | - | chr1_4:72189164-72189183 | Msa0183320:CDS | 45.0% | |
| TAGGGCTTATGAGTCTGGTA+AGG | - | chr1_4:72189232-72189251 | Msa0183320:intron | 45.0% | |
| AGGGCTTATGAGTCTGGTAA+GGG | - | chr1_4:72189233-72189252 | Msa0183320:intron | 45.0% | |
| !! | TCCCCTTCATTCTAGTTTGG+AGG | - | chr1_4:72189286-72189305 | Msa0183320:intron | 45.0% |
| ACCCTGATGTAGGAATGTGA+TGG | - | chr1_4:72189742-72189761 | Msa0183320:CDS | 45.0% | |
| GCCATCACATTCCTACATCA+GGG | + | chr1_4:72189746-72189765 | None:intergenic | 45.0% | |
| AGCCATCACATTCCTACATC+AGG | + | chr1_4:72189747-72189766 | None:intergenic | 45.0% | |
| GATGTAGGAATGTGATGGCT+AGG | - | chr1_4:72189747-72189766 | Msa0183320:CDS | 45.0% | |
| GAGCATGCACTTGAATAGAC+AGG | - | chr1_4:72189906-72189925 | Msa0183320:CDS | 45.0% | |
| CATGGAAGTCCATGTCATCT+AGG | - | chr1_4:72190051-72190070 | Msa0183320:intron | 45.0% | |
| GCAATCATCATGCAAGAGTC+TGG | - | chr1_4:72190073-72190092 | Msa0183320:intron | 45.0% | |
| ATCATCATGCAAGAGTCTGG+TGG | - | chr1_4:72190076-72190095 | Msa0183320:intron | 45.0% | |
| !! | GAAGGATTCTTCAAGTTGGG+TGG | - | chr1_4:72190109-72190128 | Msa0183320:intron | 45.0% |
| AGATCTGTATGCTGGGATCT+TGG | - | chr1_4:72190538-72190557 | Msa0183320:intron | 45.0% | |
| CGACTGTGTTAAGCTGCATT+TGG | + | chr1_4:72190730-72190749 | None:intergenic | 45.0% | |
| AATGCAGCTTAACACAGTCG+TGG | - | chr1_4:72190730-72190749 | Msa0183320:CDS | 45.0% | |
| TTGAAGCCGAGCTTCATCAT+TGG | - | chr1_4:72190871-72190890 | Msa0183320:CDS | 45.0% | |
| !! | GACTTGAAATGGCATTGGCA+TGG | + | chr1_4:72191015-72191034 | None:intergenic | 45.0% |
| GTGAGTGTTACCGTCTTATC+AGG | + | chr1_4:72191095-72191114 | None:intergenic | 45.0% | |
| GTGATTACTTGGAGACACTG+AGG | - | chr1_4:72191327-72191346 | Msa0183320:CDS | 45.0% | |
| GACACTGAGGAGAAAACTTG+AGG | - | chr1_4:72191340-72191359 | Msa0183320:CDS | 45.0% | |
| GTTGCATGCAAGAAACACAG+AGG | - | chr1_4:72191384-72191403 | Msa0183320:CDS | 45.0% | |
| ! | AGAAGATGGTGGTTGCAATG+TGG | - | chr1_4:72191547-72191566 | Msa0183320:CDS | 45.0% |
| AAGGGTCAAGACCCTTAGGA+GGG | + | chr1_4:72188590-72188609 | None:intergenic | 50.0% | |
| !! | CTCAGAAGACTCTGAGGTTG+TGG | + | chr1_4:72188721-72188740 | None:intergenic | 50.0% |
| CACAACCTCAGAGTCTTCTG+AGG | - | chr1_4:72188719-72188738 | Msa0183320:CDS | 50.0% | |
| CTCTTCCTCAGAAGACTCTG+AGG | + | chr1_4:72188727-72188746 | None:intergenic | 50.0% | |
| ! | CTCAGAGTCTTCTGAGGAAG+AGG | - | chr1_4:72188725-72188744 | Msa0183320:CDS | 50.0% |
| !! | TGTGGTGAAGGCATTGAAGG+TGG | + | chr1_4:72188858-72188877 | None:intergenic | 50.0% |
| !! | CTCTGTGGTGAAGGCATTGA+AGG | + | chr1_4:72188861-72188880 | None:intergenic | 50.0% |
| AGGGATTCCAGAGTTAGAGG+AGG | - | chr1_4:72188989-72189008 | Msa0183320:CDS | 50.0% | |
| TCCAGAGTTAGAGGAGGAAG+TGG | - | chr1_4:72188995-72189014 | Msa0183320:CDS | 50.0% | |
| TCCACTTCCTCCTCTAACTC+TGG | + | chr1_4:72188999-72189018 | None:intergenic | 50.0% | |
| GGTCTTAAGAAGCCCAATGC+AGG | + | chr1_4:72189474-72189493 | None:intergenic | 50.0% | |
| GTGAATTCCTTGCCTTAGGC+TGG | - | chr1_4:72190410-72190429 | Msa0183320:intron | 50.0% | |
| TGCACGCCAATGATGAAGCT+CGG | + | chr1_4:72190880-72190899 | None:intergenic | 50.0% | |
| GCATACGTAGAAGCTCTGCA+TGG | - | chr1_4:72190930-72190949 | Msa0183320:CDS | 50.0% | |
| ACGTAGAAGCTCTGCATGGA+TGG | - | chr1_4:72190934-72190953 | Msa0183320:CDS | 50.0% | |
| GAAGGGTCAAGACCCTTAGG+AGG | + | chr1_4:72188591-72188610 | None:intergenic | 55.0% | |
| GGAGAAGGGTCAAGACCCTT+AGG | + | chr1_4:72188594-72188613 | None:intergenic | 55.0% | |
| GAGGAAGAGGGAGAGAGAGA+AGG | - | chr1_4:72188738-72188757 | Msa0183320:CDS | 55.0% | |
| GAGGGAGAGAGAGAAGGTGA+AGG | - | chr1_4:72188744-72188763 | Msa0183320:CDS | 55.0% | |
| !! | GGTGAAGGCATTGAAGGTGG+TGG | + | chr1_4:72188855-72188874 | None:intergenic | 55.0% |
| TGATTTGAGGGCAGTGAGGG+AGG | - | chr1_4:72188962-72188981 | Msa0183320:CDS | 55.0% | |
| GGTGGAGGGAAAGTTGTGAG+TGG | - | chr1_4:72189077-72189096 | Msa0183320:CDS | 55.0% | |
| ! | GAGTGGTGTTGAAACGGCGA+AGG | - | chr1_4:72189094-72189113 | Msa0183320:CDS | 55.0% |
| TGTTGAAACGGCGAAGGCTG+TGG | - | chr1_4:72189100-72189119 | Msa0183320:CDS | 55.0% | |
| AGCAACTCTCTCCCTTCTGC+AGG | + | chr1_4:72189179-72189198 | None:intergenic | 55.0% | |
| GGGTGTGACCAAGATGCTTG+AGG | - | chr1_4:72189253-72189272 | Msa0183320:intron | 55.0% | |
| GCTATCTCCAGCCTAAGGCA+AGG | + | chr1_4:72190420-72190439 | None:intergenic | 55.0% | |
| CTTAGGCTGGAGATAGCACG+CGG | - | chr1_4:72190423-72190442 | Msa0183320:intron | 55.0% | |
| !! | GGCGGCCCATTGACTTGAAA+TGG | + | chr1_4:72191026-72191045 | None:intergenic | 55.0% |
| AGGGCAGTGAGGGAGGAAGA+AGG | - | chr1_4:72188969-72188988 | Msa0183320:CDS | 60.0% | |
| GGGCAGTGAGGGAGGAAGAA+GGG | - | chr1_4:72188970-72188989 | Msa0183320:CDS | 60.0% | |
| AACGGCGAAGGCTGTGGATG+TGG | - | chr1_4:72189106-72189125 | Msa0183320:CDS | 60.0% | |
| CGCGTGCTATCTCCAGCCTA+AGG | + | chr1_4:72190425-72190444 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 72188375 | 72191598 | 72188375 | ID=Msa0183320;Name=Msa0183320 |
| chr1_4 | mRNA | 72188375 | 72191598 | 72188375 | ID=Msa0183320-mRNA-1;Parent=Msa0183320;Name=Msa0183320-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.25|1|1|1|4|0|749 |
| chr1_4 | exon | 72190656 | 72191598 | 72190656 | ID=Msa0183320-mRNA-1:exon:24375;Parent=Msa0183320-mRNA-1 |
| chr1_4 | exon | 72189732 | 72189952 | 72189732 | ID=Msa0183320-mRNA-1:exon:24374;Parent=Msa0183320-mRNA-1 |
| chr1_4 | exon | 72189322 | 72189545 | 72189322 | ID=Msa0183320-mRNA-1:exon:24373;Parent=Msa0183320-mRNA-1 |
| chr1_4 | exon | 72188375 | 72189236 | 72188375 | ID=Msa0183320-mRNA-1:exon:24372;Parent=Msa0183320-mRNA-1 |
| chr1_4 | CDS | 72190656 | 72191598 | 72190656 | ID=Msa0183320-mRNA-1:cds;Parent=Msa0183320-mRNA-1 |
| chr1_4 | CDS | 72189732 | 72189952 | 72189732 | ID=Msa0183320-mRNA-1:cds;Parent=Msa0183320-mRNA-1 |
| chr1_4 | CDS | 72189322 | 72189545 | 72189322 | ID=Msa0183320-mRNA-1:cds;Parent=Msa0183320-mRNA-1 |
| chr1_4 | CDS | 72188375 | 72189236 | 72188375 | ID=Msa0183320-mRNA-1:cds;Parent=Msa0183320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
