Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044520 | sp|A0A178VBJ0|APSR1_ARATH | 30.169 | 474 | 283 | 9 | 271 | 730 | 199 | 638 | 1.00e-56 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030070 | Msa0044520 | 0.811164 | 8.027923e-51 | -8.615850e-47 |
| Msa0044520 | Msa0091230 | 0.908619 | 1.401704e-81 | -8.615850e-47 |
| Msa0044520 | Msa0091350 | 0.812010 | 5.257785e-51 | -8.615850e-47 |
| Msa0044520 | Msa0106630 | 0.803415 | 3.523978e-49 | -8.615850e-47 |
| Msa0044520 | Msa0125590 | 0.824933 | 6.171725e-54 | -8.615850e-47 |
| Msa0044520 | Msa0140200 | 0.802077 | 6.657834e-49 | -8.615850e-47 |
| Msa0044520 | Msa0141640 | 0.811899 | 5.556902e-51 | -8.615850e-47 |
| Msa0044520 | Msa0153210 | 0.809769 | 1.606242e-50 | -8.615850e-47 |
| Msa0044520 | Msa0159590 | 0.803804 | 2.926508e-49 | -8.615850e-47 |
| Msa0044520 | Msa0170070 | 0.821815 | 3.302760e-53 | -8.615850e-47 |
| Msa0044520 | Msa0172590 | 0.801703 | 7.943752e-49 | -8.615850e-47 |
| Msa0044520 | Msa0183320 | 0.800920 | 1.149242e-48 | -8.615850e-47 |
| Msa0044520 | Msa0281540 | 0.818586 | 1.814490e-52 | -8.615850e-47 |
| Msa0044520 | Msa0320580 | 0.807292 | 5.427251e-50 | -8.615850e-47 |
| Msa0044520 | Msa0344110 | 0.806399 | 8.382133e-50 | -8.615850e-47 |
| Msa0044520 | Msa0373170 | 0.816753 | 4.699786e-52 | -8.615850e-47 |
| Msa0044520 | Msa0382230 | 0.801122 | 1.045203e-48 | -8.615850e-47 |
| Msa0044520 | Msa0404770 | 0.801399 | 9.169778e-49 | -8.615850e-47 |
| Msa0044520 | Msa0415820 | 0.816267 | 6.040396e-52 | -8.615850e-47 |
| Msa0044520 | Msa0421750 | 0.806324 | 8.694018e-50 | -8.615850e-47 |
| Msa0044520 | Msa0433760 | 0.807530 | 4.831583e-50 | -8.615850e-47 |
| Msa0044520 | Msa0467690 | 0.817972 | 2.498571e-52 | -8.615850e-47 |
| Msa0044520 | Msa0477630 | 0.808323 | 3.276414e-50 | -8.615850e-47 |
| Msa0044520 | Msa0506880 | 0.814663 | 1.373639e-51 | -8.615850e-47 |
| Msa0044520 | Msa0507810 | 0.805399 | 1.360042e-49 | -8.615850e-47 |
| Msa0044520 | Msa0507920 | 0.814247 | 1.697539e-51 | -8.615850e-47 |
| Msa0044520 | Msa0514020 | 0.816534 | 5.263046e-52 | -8.615850e-47 |
| Msa0044520 | Msa0520680 | 0.800246 | 1.576691e-48 | -8.615850e-47 |
| Msa0044520 | Msa0521680 | 0.803549 | 3.305488e-49 | -8.615850e-47 |
| Msa0044520 | Msa0527850 | 0.809686 | 1.673894e-50 | -8.615850e-47 |
| Msa0044520 | Msa0554300 | 0.802180 | 6.339132e-49 | -8.615850e-47 |
| Msa0044520 | Msa0561560 | 0.829984 | 3.790202e-55 | -8.615850e-47 |
| Msa0044520 | Msa0572830 | 0.802980 | 4.336113e-49 | -8.615850e-47 |
| Msa0044520 | Msa0582460 | 0.802276 | 6.057635e-49 | -8.615850e-47 |
| Msa0044520 | Msa0586200 | 0.800716 | 1.264968e-48 | -8.615850e-47 |
| Msa0044520 | Msa0620500 | 0.826439 | 2.710678e-54 | -8.615850e-47 |
| Msa0044520 | Msa0645340 | 0.809883 | 1.517868e-50 | -8.615850e-47 |
| Msa0044520 | Msa0648760 | 0.812789 | 3.553376e-51 | -8.615850e-47 |
| Msa0044520 | Msa0654740 | 0.828070 | 1.102736e-54 | -8.615850e-47 |
| Msa0044520 | Msa0688620 | 0.805282 | 1.439081e-49 | -8.615850e-47 |
| Msa0044520 | Msa0707260 | 0.800274 | 1.556372e-48 | -8.615850e-47 |
| Msa0044520 | Msa0717900 | 0.823043 | 1.712547e-53 | -8.615850e-47 |
| Msa0044520 | Msa0718040 | 0.801597 | 8.353340e-49 | -8.615850e-47 |
| Msa0044520 | Msa0720280 | 0.820231 | 7.652222e-53 | -8.615850e-47 |
| Msa0044520 | Msa0750520 | 0.803742 | 3.014360e-49 | -8.615850e-47 |
| Msa0044520 | Msa0778600 | 0.809899 | 1.505978e-50 | -8.615850e-47 |
| Msa0044520 | Msa0800660 | 0.814113 | 1.817321e-51 | -8.615850e-47 |
| Msa0044520 | Msa0803140 | 0.820685 | 6.018776e-53 | -8.615850e-47 |
| Msa0044520 | Msa0816080 | 0.821226 | 4.519097e-53 | -8.615850e-47 |
| Msa0044520 | Msa0816230 | 0.807804 | 4.225591e-50 | -8.615850e-47 |
| Msa0044520 | Msa0821160 | 0.805868 | 1.084219e-49 | -8.615850e-47 |
| Msa0044520 | Msa0827420 | 0.800171 | 1.633520e-48 | -8.615850e-47 |
| Msa0044520 | Msa0841500 | 0.804073 | 2.573412e-49 | -8.615850e-47 |
| Msa0044520 | Msa0900760 | 0.801909 | 7.209010e-49 | -8.615850e-47 |
| Msa0044520 | Msa0909760 | 0.830944 | 2.208222e-55 | -8.615850e-47 |
| Msa0044520 | Msa0966710 | 0.836076 | 1.156452e-56 | -8.615850e-47 |
| Msa0044520 | Msa1000970 | 0.814716 | 1.337336e-51 | -8.615850e-47 |
| Msa0044520 | Msa1008670 | 0.805201 | 1.496277e-49 | -8.615850e-47 |
| Msa0044520 | Msa1071410 | 0.806463 | 8.126050e-50 | -8.615850e-47 |
| Msa0044520 | Msa1076020 | 0.806332 | 8.660582e-50 | -8.615850e-47 |
| Msa0044520 | Msa1078880 | 0.803665 | 3.128059e-49 | -8.615850e-47 |
| Msa0044520 | Msa1078970 | 0.800787 | 1.223439e-48 | -8.615850e-47 |
| Msa0044520 | Msa1116660 | 0.812361 | 4.407706e-51 | -8.615850e-47 |
| Msa0044520 | Msa1116740 | 0.809198 | 2.130370e-50 | -8.615850e-47 |
| Msa0044520 | Msa1127280 | 0.802297 | 5.997998e-49 | -8.615850e-47 |
| Msa0044520 | Msa1162880 | 0.824842 | 6.483098e-54 | -8.615850e-47 |
| Msa0044520 | Msa1165480 | 0.813023 | 3.157142e-51 | -8.615850e-47 |
| Msa0044520 | Msa1169190 | 0.807139 | 5.849264e-50 | -8.615850e-47 |
| Msa0044520 | Msa1215980 | 0.828340 | 9.494471e-55 | -8.615850e-47 |
| Msa0044520 | Msa1254540 | 0.811691 | 6.168091e-51 | -8.615850e-47 |
| Msa0044520 | Msa1301820 | 0.807262 | 5.506753e-50 | -8.615850e-47 |
| Msa0044520 | Msa1339230 | 0.805168 | 1.520204e-49 | -8.615850e-47 |
| Msa0044520 | Msa1381800 | 0.804753 | 1.856552e-49 | -8.615850e-47 |
| Msa0044520 | Msa1387500 | 0.814829 | 1.262382e-51 | -8.615850e-47 |
| Msa0044520 | Msa1426320 | 0.803888 | 2.811402e-49 | -8.615850e-47 |
| Msa0044520 | Msa1428240 | 0.807296 | 5.416761e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044520 | MtrunA17_Chr1g0211271 | 97.870 | 751 | 11 | 2 | 1 | 749 | 1 | 748 | 0.0 | 1526 |
| Msa0044520 | MtrunA17_Chr4g0072011 | 29.870 | 693 | 369 | 24 | 1 | 607 | 1 | 662 | 8.25e-64 | 226 |
| Msa0044520 | MtrunA17_Chr3g0118401 | 31.836 | 512 | 265 | 15 | 173 | 606 | 176 | 681 | 3.93e-60 | 217 |
| Msa0044520 | MtrunA17_Chr5g0405741 | 27.778 | 468 | 308 | 7 | 272 | 733 | 204 | 647 | 6.63e-54 | 197 |
| Msa0044520 | MtrunA17_Chr5g0440551 | 35.165 | 364 | 202 | 6 | 272 | 608 | 311 | 667 | 1.84e-53 | 197 |
| Msa0044520 | MtrunA17_Chr8g0335341 | 26.029 | 753 | 463 | 21 | 1 | 707 | 1 | 705 | 1.67e-49 | 186 |
| Msa0044520 | MtrunA17_Chr3g0124841 | 27.802 | 464 | 307 | 8 | 268 | 717 | 450 | 899 | 1.37e-48 | 184 |
| Msa0044520 | MtrunA17_Chr3g0139411 | 25.256 | 586 | 394 | 14 | 159 | 738 | 164 | 711 | 3.21e-45 | 173 |
| Msa0044520 | MtrunA17_Chr7g0250681 | 27.426 | 474 | 304 | 10 | 246 | 707 | 380 | 825 | 5.76e-43 | 167 |
| Msa0044520 | MtrunA17_Chr2g0298171 | 36.111 | 288 | 169 | 4 | 274 | 550 | 534 | 817 | 5.85e-43 | 167 |
| Msa0044520 | MtrunA17_Chr5g0448571 | 28.190 | 525 | 329 | 13 | 173 | 671 | 237 | 739 | 6.29e-43 | 166 |
| Msa0044520 | MtrunA17_Chr2g0331821 | 27.074 | 458 | 301 | 10 | 274 | 723 | 322 | 754 | 4.67e-42 | 164 |
| Msa0044520 | MtrunA17_Chr3g0130761 | 26.761 | 568 | 362 | 13 | 173 | 717 | 238 | 774 | 1.40e-37 | 150 |
| Msa0044520 | MtrunA17_Chr4g0004471 | 26.201 | 458 | 290 | 13 | 273 | 717 | 124 | 546 | 6.90e-35 | 140 |
| Msa0044520 | MtrunA17_Chr2g0303521 | 25.561 | 446 | 300 | 7 | 271 | 712 | 207 | 624 | 2.53e-32 | 133 |
| Msa0044520 | MtrunA17_Chr3g0143731 | 28.286 | 350 | 213 | 8 | 276 | 615 | 279 | 600 | 3.72e-31 | 130 |
| Msa0044520 | MtrunA17_Chr8g0382551 | 28.870 | 478 | 243 | 18 | 1 | 422 | 1 | 437 | 1.44e-28 | 119 |
| Msa0044520 | MtrunA17_Chr8g0382541 | 30.769 | 169 | 113 | 2 | 448 | 616 | 1 | 165 | 4.19e-19 | 87.4 |
| Msa0044520 | MtrunA17_Chr1g0208081 | 49.412 | 85 | 43 | 0 | 364 | 448 | 1 | 85 | 8.11e-18 | 79.7 |
| Msa0044520 | MtrunA17_Chr4g0052471 | 28.061 | 196 | 131 | 5 | 276 | 468 | 8 | 196 | 8.05e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044520 | AT4G30130.3 | 31.805 | 676 | 357 | 23 | 1 | 607 | 1 | 641 | 8.87e-64 | 226 |
| Msa0044520 | AT4G30130.1 | 31.805 | 676 | 357 | 23 | 1 | 607 | 1 | 641 | 8.87e-64 | 226 |
| Msa0044520 | AT1G21740.1 | 29.921 | 508 | 327 | 7 | 222 | 717 | 451 | 941 | 8.47e-59 | 215 |
| Msa0044520 | AT2G27090.2 | 27.285 | 722 | 377 | 22 | 1 | 621 | 1 | 675 | 6.21e-58 | 210 |
| Msa0044520 | AT2G27090.1 | 27.285 | 722 | 377 | 22 | 1 | 621 | 1 | 675 | 6.21e-58 | 210 |
| Msa0044520 | AT3G51290.3 | 30.169 | 474 | 283 | 9 | 271 | 730 | 199 | 638 | 1.02e-57 | 208 |
| Msa0044520 | AT3G51290.2 | 29.959 | 484 | 291 | 9 | 271 | 740 | 199 | 648 | 6.01e-57 | 208 |
| Msa0044520 | AT3G51290.1 | 29.814 | 483 | 284 | 11 | 262 | 730 | 191 | 632 | 4.04e-54 | 197 |
| Msa0044520 | AT1G02110.1 | 26.471 | 748 | 446 | 18 | 1 | 707 | 1 | 685 | 2.28e-53 | 197 |
| Msa0044520 | AT4G39790.1 | 36.212 | 359 | 194 | 7 | 271 | 600 | 250 | 602 | 2.73e-53 | 196 |
| Msa0044520 | AT2G19090.1 | 35.162 | 401 | 216 | 8 | 274 | 656 | 387 | 761 | 1.87e-52 | 196 |
| Msa0044520 | AT1G77500.1 | 29.128 | 436 | 285 | 5 | 272 | 707 | 449 | 860 | 3.09e-51 | 192 |
| Msa0044520 | AT4G35240.4 | 26.667 | 615 | 326 | 18 | 169 | 718 | 274 | 828 | 1.06e-47 | 182 |
| Msa0044520 | AT4G35240.3 | 26.667 | 615 | 326 | 18 | 169 | 718 | 274 | 828 | 1.06e-47 | 182 |
| Msa0044520 | AT4G35240.2 | 26.667 | 615 | 326 | 18 | 169 | 718 | 274 | 828 | 1.61e-47 | 181 |
| Msa0044520 | AT4G35240.1 | 26.667 | 615 | 326 | 18 | 169 | 718 | 274 | 828 | 1.61e-47 | 181 |
| Msa0044520 | AT4G30130.4 | 32.946 | 516 | 278 | 18 | 1 | 467 | 1 | 497 | 1.75e-45 | 171 |
| Msa0044520 | AT4G30130.2 | 32.946 | 516 | 278 | 18 | 1 | 467 | 1 | 497 | 1.75e-45 | 171 |
| Msa0044520 | AT3G60320.1 | 27.536 | 483 | 316 | 7 | 236 | 707 | 319 | 778 | 1.04e-40 | 160 |
| Msa0044520 | AT2G17110.1 | 30.064 | 469 | 280 | 8 | 169 | 603 | 179 | 633 | 4.38e-40 | 158 |
| Msa0044520 | AT1G52320.2 | 24.000 | 525 | 344 | 9 | 208 | 722 | 302 | 781 | 5.88e-38 | 152 |
| Msa0044520 | AT1G52320.5 | 24.000 | 525 | 344 | 9 | 208 | 722 | 302 | 781 | 5.88e-38 | 152 |
| Msa0044520 | AT1G52320.1 | 24.000 | 525 | 344 | 9 | 208 | 722 | 279 | 758 | 6.02e-38 | 152 |
| Msa0044520 | AT1G52320.3 | 24.160 | 476 | 320 | 7 | 257 | 722 | 11 | 455 | 3.56e-36 | 143 |
| Msa0044520 | AT1G52320.4 | 24.160 | 476 | 320 | 7 | 257 | 722 | 11 | 455 | 3.56e-36 | 143 |
| Msa0044520 | AT1G20530.1 | 25.714 | 630 | 387 | 16 | 1 | 624 | 1 | 555 | 3.38e-33 | 136 |
| Msa0044520 | AT5G54480.1 | 27.528 | 356 | 217 | 8 | 371 | 721 | 400 | 719 | 1.45e-29 | 125 |
| Msa0044520 | AT2G34670.2 | 23.236 | 581 | 376 | 15 | 158 | 707 | 123 | 664 | 1.94e-28 | 122 |
| Msa0044520 | AT2G34670.1 | 23.555 | 467 | 287 | 15 | 158 | 594 | 123 | 549 | 1.39e-17 | 87.4 |
Find 162 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCACCACAGAGAGATTT+TGG | 0.150155 | 1_1:+76105820 | Msa0044520:CDS |
| AATGATCTATTTGATGATTA+TGG | 0.221454 | 1_1:+76107093 | Msa0044520:CDS |
| ACATTGAATGGATTGCAATT+TGG | 0.234471 | 1_1:+76108363 | Msa0044520:CDS |
| CATTGAATGGATTGCAATTT+GGG | 0.250004 | 1_1:+76108364 | Msa0044520:CDS |
| TCGAGTAAAATTCAACTTCA+TGG | 0.282119 | 1_1:-76107927 | None:intergenic |
| TGGTTTCTGATGGTGTTTGC+TGG | 0.291077 | 1_1:-76105612 | None:intergenic |
| TGTTATTGCATTAATGAGTT+TGG | 0.311748 | 1_1:-76106983 | None:intergenic |
| CCTTATAACTTTCCCTCCTA+AGG | 0.316405 | 1_1:+76105528 | Msa0044520:CDS |
| AATTCCCCTTCATTCTAGTT+TGG | 0.322897 | 1_1:+76106236 | Msa0044520:CDS |
| GAAATTGTTTGAGGAGGTTA+AGG | 0.331317 | 1_1:+76107173 | Msa0044520:CDS |
| ATATCGAGGACCATTTCATT+AGG | 0.339597 | 1_1:+76106166 | Msa0044520:CDS |
| TTCATTAGGGCTTATGAGTC+TGG | 0.342761 | 1_1:+76106180 | Msa0044520:CDS |
| TTGAGAAATAAGAATGTTAG+AGG | 0.343032 | 1_1:+76107426 | Msa0044520:CDS |
| GTGAGTGTTACCGTCTTATC+AGG | 0.343110 | 1_1:-76108045 | None:intergenic |
| CCTTAGGAGGGAAAGTTATA+AGG | 0.348068 | 1_1:-76105528 | None:intergenic |
| GATTATGGAGGAATGGATTC+GGG | 0.351284 | 1_1:+76107108 | Msa0044520:CDS |
| TGAAAGATGTGAAAGCTCTT+TGG | 0.355631 | 1_1:+76108082 | Msa0044520:CDS |
| AGGAGATGATGAATTAAGTA+TGG | 0.367089 | 1_1:+76107446 | Msa0044520:CDS |
| GTTGCTTGTGACTCATGTAT+TGG | 0.370767 | 1_1:+76105646 | Msa0044520:CDS |
| TTCAATAGTTCAACAATTTG+AGG | 0.371023 | 1_1:-76107579 | None:intergenic |
| TATCGAGGACCATTTCATTA+GGG | 0.384897 | 1_1:+76106167 | Msa0044520:CDS |
| TCGTGAAGAAGAATGCTTAA+TGG | 0.386241 | 1_1:+76108251 | Msa0044520:CDS |
| CTCTGTGGTGAAGGCATTGA+AGG | 0.387609 | 1_1:-76105811 | None:intergenic |
| TGATTATGGAGGAATGGATT+CGG | 0.388164 | 1_1:+76107107 | Msa0044520:CDS |
| TCCACTTCCTCCTCTAACTC+TGG | 0.397576 | 1_1:-76105949 | None:intergenic |
| AGGGCAGTGAGGGAGGAAGA+AGG | 0.402646 | 1_1:+76105922 | Msa0044520:CDS |
| CCAATGCCATTTCAAGTCAA+TGG | 0.408523 | 1_1:+76107970 | Msa0044520:CDS |
| CTCAGAAGACTGTGAGGTTG+TGG | 0.415315 | 1_1:-76105671 | None:intergenic |
| GGGCAGTGAGGGAGGAAGAA+GGG | 0.421828 | 1_1:+76105923 | Msa0044520:CDS |
| GGCGGCCCATTGACTTGAAA+TGG | 0.422222 | 1_1:-76107976 | None:intergenic |
| TATGAAGGATTCTTCAAGTT+GGG | 0.435429 | 1_1:+76107059 | Msa0044520:CDS |
| TCCAGAGTTAGAGGAGGAAG+TGG | 0.438913 | 1_1:+76105948 | Msa0044520:CDS |
| AATGGATAAAAGTGATTACT+TGG | 0.441015 | 1_1:+76108269 | Msa0044520:CDS |
| TCCCCTTCATTCTAGTTTGG+AGG | 0.441439 | 1_1:+76106239 | Msa0044520:CDS |
| GTTAGAGGAGGAAGTGGAAA+GGG | 0.441445 | 1_1:+76105954 | Msa0044520:CDS |
| GGAGAAGGGTCAAGACCCTT+AGG | 0.446422 | 1_1:-76105544 | None:intergenic |
| AGAAGGGATTCCAGAGTTAG+AGG | 0.450891 | 1_1:+76105939 | Msa0044520:CDS |
| TCTATTAGCCTCAAGCATCT+TGG | 0.450939 | 1_1:-76106214 | None:intergenic |
| ATGTGGCTAATGAAAATGTT+GGG | 0.452073 | 1_1:+76106076 | Msa0044520:CDS |
| AGCAACTCTCTCCCTTCTGC+AGG | 0.453953 | 1_1:-76106129 | None:intergenic |
| CATGGAAGTCCATGTCATCT+AGG | 0.456422 | 1_1:+76107004 | Msa0044520:CDS |
| GCAATCATCATGCAAGAGTC+TGG | 0.456649 | 1_1:+76107026 | Msa0044520:CDS |
| AAGAATAATAAAGAAGGTGG+AGG | 0.464612 | 1_1:+76106015 | Msa0044520:CDS |
| TCTGGCCTCATACTGTCAAA+AGG | 0.466622 | 1_1:-76105859 | None:intergenic |
| AGTGAAAATAGTGAGAAAGC+TGG | 0.468649 | 1_1:+76108462 | Msa0044520:CDS |
| TTGCAATCAATCTCGTGGAT+TGG | 0.469345 | 1_1:+76107789 | Msa0044520:CDS |
| AAGGGTAGAACTTGAGCATA+AGG | 0.470394 | 1_1:+76105972 | Msa0044520:CDS |
| CTCACAGTCTTCTGAGGAAG+AGG | 0.471294 | 1_1:+76105678 | Msa0044520:CDS |
| ACTCATAAGCCCTAATGAAA+TGG | 0.472464 | 1_1:-76106176 | None:intergenic |
| CTTATAACTTTCCCTCCTAA+GGG | 0.473646 | 1_1:+76105529 | Msa0044520:CDS |
| TGATTGCAAAATTTATCGTA+CGG | 0.475042 | 1_1:-76107775 | None:intergenic |
| TTGAAGCCGAGCTTCATCAT+TGG | 0.475679 | 1_1:+76107824 | Msa0044520:CDS |
| GGAAGTCATTTATTAACCTT+AGG | 0.476815 | 1_1:+76107129 | Msa0044520:CDS |
| TTTCCTCCAAACTAGAATGA+AGG | 0.477927 | 1_1:-76106242 | None:intergenic |
| GAGAAAACTTGAGGTAGAGA+AGG | 0.480533 | 1_1:+76108302 | Msa0044520:CDS |
| CAAATTGTTGAACTATTGAA+AGG | 0.480895 | 1_1:+76107582 | Msa0044520:CDS |
| CAATGCCATTTCAAGTCAAT+GGG | 0.483470 | 1_1:+76107971 | Msa0044520:CDS |
| AGATCTGTATGCTGGGATCT+TGG | 0.483601 | 1_1:+76107491 | Msa0044520:CDS |
| ATTTGATGATTATGGAGGAA+TGG | 0.485602 | 1_1:+76107101 | Msa0044520:CDS |
| TAGGGCTTATGAGTCTGGTA+AGG | 0.488409 | 1_1:+76106185 | Msa0044520:CDS |
| GATTTAGATAGAAGATATGA+TGG | 0.488627 | 1_1:+76108159 | Msa0044520:CDS |
| TGATGCATAGGCATATTCAT+AGG | 0.490912 | 1_1:-76105772 | None:intergenic |
| GAATTCAGATGATGATTTGA+GGG | 0.492691 | 1_1:+76105903 | Msa0044520:CDS |
| TGATTTGAGGGCAGTGAGGG+AGG | 0.493471 | 1_1:+76105915 | Msa0044520:CDS |
| GATATGAAAGATCTGTATGC+TGG | 0.494737 | 1_1:+76107483 | Msa0044520:CDS |
| GATTGCAAAATTTATCGTAC+GGG | 0.498032 | 1_1:-76107774 | None:intergenic |
| GAGAAGAATAATAAAGAAGG+TGG | 0.501102 | 1_1:+76106012 | Msa0044520:CDS |
| ATGGGAAAAGAAATTGTTTG+AGG | 0.502236 | 1_1:+76107164 | Msa0044520:CDS |
| ACACAGAGGATGACATTGAA+TGG | 0.505166 | 1_1:+76108351 | Msa0044520:CDS |
| CTATTTGTAGAGAGAGAAAA+CGG | 0.505888 | 1_1:+76105374 | Msa0044520:CDS |
| GTTATAAGGAAAGGTGAAGA+AGG | 0.506368 | 1_1:-76105514 | None:intergenic |
| CCAAAATCTCTCTGTGGTGA+AGG | 0.507180 | 1_1:-76105820 | None:intergenic |
| TACTCGTAATATGCAACGAT+TGG | 0.509042 | 1_1:+76108001 | Msa0044520:CDS |
| TTCCTCCAAACTAGAATGAA+GGG | 0.510602 | 1_1:-76106241 | None:intergenic |
| CCATGCATATAACCTTCCTA+AGG | 0.511382 | 1_1:-76107145 | None:intergenic |
| AATCATCATCTGAATTCCTA+TGG | 0.513102 | 1_1:-76105897 | None:intergenic |
| GGAATTCAGATGATGATTTG+AGG | 0.513548 | 1_1:+76105902 | Msa0044520:CDS |
| CCTTAGGAAGGTTATATGCA+TGG | 0.516989 | 1_1:+76107145 | Msa0044520:CDS |
| CCATTGACTTGAAATGGCAT+TGG | 0.517887 | 1_1:-76107970 | None:intergenic |
| GAAGAGAAGAATAATAAAGA+AGG | 0.518314 | 1_1:+76106009 | Msa0044520:CDS |
| GATGTGGCTAATGAAAATGT+TGG | 0.520032 | 1_1:+76106075 | Msa0044520:CDS |
| TGGTAGCCATTCATAACCTC+TGG | 0.520711 | 1_1:-76105877 | None:intergenic |
| CTGGCCTCATACTGTCAAAA+GGG | 0.522430 | 1_1:-76105858 | None:intergenic |
| AACATTTCGTATATAGAAGA+TGG | 0.524010 | 1_1:+76108486 | Msa0044520:CDS |
| GTCATTTATTAACCTTAGGA+AGG | 0.527369 | 1_1:+76107133 | Msa0044520:CDS |
| GAGGAAGAGGGAGAGAGAGA+AGG | 0.528103 | 1_1:+76105691 | Msa0044520:CDS |
| CGCACGCCAATGATGAAGCT+CGG | 0.533254 | 1_1:-76107830 | None:intergenic |
| ACGTAGAAGCTCTGCATGGA+TGG | 0.535242 | 1_1:+76107887 | Msa0044520:CDS |
| TGTTGAAACGGCGAAGGCTG+TGG | 0.535339 | 1_1:+76106053 | Msa0044520:CDS |
| AAATTGTTGAACTATTGAAA+GGG | 0.537939 | 1_1:+76107583 | Msa0044520:CDS |
| GTGAAAATAGTGAGAAAGCT+GGG | 0.538808 | 1_1:+76108463 | Msa0044520:CDS |
| TCGTTGCATATTACGAGTAA+TGG | 0.540538 | 1_1:-76107997 | None:intergenic |
| GGAAAAGAAATTGTTTGAGG+AGG | 0.545354 | 1_1:+76107167 | Msa0044520:CDS |
| ATATGAAGGATTCTTCAAGT+TGG | 0.546672 | 1_1:+76107058 | Msa0044520:CDS |
| ACAAGCAACAGATTCATGCT+TGG | 0.548945 | 1_1:-76105632 | None:intergenic |
| CTTAGGAAGGTTATATGCAT+GGG | 0.550042 | 1_1:+76107146 | Msa0044520:CDS |
| GATCTATTTGATGATTATGG+AGG | 0.551469 | 1_1:+76107096 | Msa0044520:CDS |
| TGATGATTTGAGGGCAGTGA+GGG | 0.554612 | 1_1:+76105912 | Msa0044520:CDS |
| GAGGGAGAGAGAGAAGGTGA+AGG | 0.559182 | 1_1:+76105697 | Msa0044520:CDS |
| GGTGTTTGCTGGAGAAACAT+AGG | 0.559934 | 1_1:-76105601 | None:intergenic |
| GGAGGGAAAGTTATAAGGAA+AGG | 0.561620 | 1_1:-76105523 | None:intergenic |
| GATTCATGCTTGGTTTCTGA+TGG | 0.562846 | 1_1:-76105622 | None:intergenic |
| CACAACCTCACAGTCTTCTG+AGG | 0.563941 | 1_1:+76105672 | Msa0044520:CDS |
| GTTGATGAATGAGAAGGAGA+AGG | 0.565677 | 1_1:-76105559 | None:intergenic |
| TCTGGTGGTTCAAAATATGA+AGG | 0.565683 | 1_1:+76107044 | Msa0044520:CDS |
| CTTATCAGGCAACTTTCGTA+AGG | 0.566150 | 1_1:-76108031 | None:intergenic |
| GAAGGATTCTTCAAGTTGGG+TGG | 0.567665 | 1_1:+76107062 | Msa0044520:CDS |
| GTGTTTGCTGGAGAAACATA+GGG | 0.572296 | 1_1:-76105600 | None:intergenic |
| AGTTGTGAGTGGTGTTGAAA+CGG | 0.573652 | 1_1:+76106041 | Msa0044520:CDS |
| GAAGGGTCAAGACCCTTAGG+AGG | 0.573723 | 1_1:-76105541 | None:intergenic |
| ATATGAAAGATCTGTATGCT+GGG | 0.574932 | 1_1:+76107484 | Msa0044520:CDS |
| AACGGCGAAGGCTGTGGATG+TGG | 0.577941 | 1_1:+76106059 | Msa0044520:CDS |
| ATAAAGAGCAGCAACAGAAG+AGG | 0.579662 | 1_1:+76108115 | Msa0044520:CDS |
| ACGAAAGTTGCCTGATAAGA+CGG | 0.580833 | 1_1:+76108035 | Msa0044520:CDS |
| ATGAGGCCAGAGGTTATGAA+TGG | 0.581936 | 1_1:+76105871 | Msa0044520:CDS |
| TCATAGATCAGAAGAAGAGT+CGG | 0.585891 | 1_1:+76108227 | Msa0044520:CDS |
| AGGTTATGAATGGCTACCAT+AGG | 0.586947 | 1_1:+76105881 | Msa0044520:CDS |
| ACATGTGAAGTATTTGACTT+CGG | 0.592384 | 1_1:-76107749 | None:intergenic |
| ACAATCGTGGAAAATCATGT+TGG | 0.597219 | 1_1:+76107696 | Msa0044520:CDS |
| TCTAGTTTGGAGGAAATCAA+AGG | 0.598376 | 1_1:+76106249 | Msa0044520:CDS |
| AGAACTTGAGCATAAGGTGG+TGG | 0.599202 | 1_1:+76105978 | Msa0044520:CDS |
| GTTCTTGATACACCTGCAGA+AGG | 0.604152 | 1_1:+76106117 | Msa0044520:CDS |
| GGCATAGACATATGATGCAT+AGG | 0.605861 | 1_1:-76105784 | None:intergenic |
| AGTTAGAGGAGGAAGTGGAA+AGG | 0.607289 | 1_1:+76105953 | Msa0044520:CDS |
| CTCTTCCTCAGAAGACTGTG+AGG | 0.607852 | 1_1:-76105677 | None:intergenic |
| AACTCATTAATGCAATAACA+TGG | 0.609435 | 1_1:+76106986 | Msa0044520:CDS |
| AGAATAATAAAGAAGGTGGA+GGG | 0.610927 | 1_1:+76106016 | Msa0044520:CDS |
| TTGATGAATGAGAAGGAGAA+GGG | 0.611312 | 1_1:-76105558 | None:intergenic |
| TGATGATTGCCTAGATGACA+TGG | 0.612443 | 1_1:-76107013 | None:intergenic |
| GGTGAAGGCATTGAAGGTGG+TGG | 0.616383 | 1_1:-76105805 | None:intergenic |
| GACTTGAAATGGCATTGGCA+TGG | 0.616911 | 1_1:-76107965 | None:intergenic |
| AGGGCTTATGAGTCTGGTAA+GGG | 0.622828 | 1_1:+76106186 | Msa0044520:CDS |
| TCACAGTCTTCTGAGGAAGA+GGG | 0.625584 | 1_1:+76105679 | Msa0044520:CDS |
| TTCTTGATACACCTGCAGAA+GGG | 0.629508 | 1_1:+76106118 | Msa0044520:CDS |
| TCCTCCAAACTAGAATGAAG+GGG | 0.630374 | 1_1:-76106240 | None:intergenic |
| AGAAGATGGTGGTTGCAATG+TGG | 0.630616 | 1_1:+76108500 | Msa0044520:CDS |
| GTGTGTTGCCTCAAAACTAG+AGG | 0.637521 | 1_1:+76105333 | Msa0044520:CDS |
| TGAAGCTTTGAAAGATATCG+AGG | 0.638509 | 1_1:+76106152 | Msa0044520:CDS |
| TGTGGTGAAGGCATTGAAGG+TGG | 0.638795 | 1_1:-76105808 | None:intergenic |
| TGCATGTAGAAATACTCACT+TGG | 0.642692 | 1_1:-76105745 | None:intergenic |
| GACACTGAGGAGAAAACTTG+AGG | 0.643003 | 1_1:+76108293 | Msa0044520:CDS |
| AGGGATTCCAGAGTTAGAGG+AGG | 0.644039 | 1_1:+76105942 | Msa0044520:CDS |
| TGTGGCTAATGAAAATGTTG+GGG | 0.649399 | 1_1:+76106077 | Msa0044520:CDS |
| ATTGCAAAATTTATCGTACG+GGG | 0.653024 | 1_1:-76107773 | None:intergenic |
| ATGATGATTTGAGGGCAGTG+AGG | 0.653507 | 1_1:+76105911 | Msa0044520:CDS |
| ATTTCGTATATAGAAGATGG+TGG | 0.654950 | 1_1:+76108489 | Msa0044520:CDS |
| GCATACGTAGAAGCTCTGCA+TGG | 0.662202 | 1_1:+76107883 | Msa0044520:CDS |
| ATCATCATGCAAGAGTCTGG+TGG | 0.664887 | 1_1:+76107029 | Msa0044520:CDS |
| AATGCAGCTTAACACAATCG+TGG | 0.665288 | 1_1:+76107683 | Msa0044520:intron |
| GGGTGTGACCAAGATGCTTG+AGG | 0.666909 | 1_1:+76106206 | Msa0044520:CDS |
| AAGGGTCAAGACCCTTAGGA+GGG | 0.667943 | 1_1:-76105540 | None:intergenic |
| GAGTGGTGTTGAAACGGCGA+AGG | 0.672115 | 1_1:+76106047 | Msa0044520:CDS |
| GGTGGAGGGAAAGTTGTGAG+TGG | 0.676621 | 1_1:+76106030 | Msa0044520:CDS |
| TTGCATATTACGAGTAATGG+CGG | 0.677646 | 1_1:-76107994 | None:intergenic |
| TCCCAACCAAAATCTCTCTG+TGG | 0.682232 | 1_1:-76105826 | None:intergenic |
| GGTAGAACTTGAGCATAAGG+TGG | 0.683792 | 1_1:+76105975 | Msa0044520:CDS |
| CTTAGGCTGGAGATAGCACG+CGG | 0.690858 | 1_1:+76107376 | Msa0044520:intron |
| TTGCAAAATTTATCGTACGG+GGG | 0.706211 | 1_1:-76107772 | None:intergenic |
| GTGGCTAATGAAAATGTTGG+GGG | 0.711834 | 1_1:+76106078 | Msa0044520:CDS |
| GTGATTACTTGGAGACACTG+AGG | 0.718942 | 1_1:+76108280 | Msa0044520:CDS |
| TGGCTAATGAAAATGTTGGG+GGG | 0.721992 | 1_1:+76106079 | Msa0044520:CDS |
| GTTGCATGCAAGAAACACAG+AGG | 0.798241 | 1_1:+76108337 | Msa0044520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAGAAATTCATTCTAAA+AGG | + | chr1_1:76107613-76107632 | Msa0044520:intron | 15.0% |
| !! | TGATTTAATTGTAGTGAATA+AGG | + | chr1_1:76106671-76106690 | Msa0044520:intron | 20.0% |
| !!! | AATGATCTATTTGATGATTA+TGG | + | chr1_1:76107093-76107112 | Msa0044520:CDS | 20.0% |
| !! | AAATTGTTGAACTATTGAAA+GGG | + | chr1_1:76107583-76107602 | Msa0044520:CDS | 20.0% |
| ! | GAAGAGAAGAATAATAAAGA+AGG | + | chr1_1:76106009-76106028 | Msa0044520:CDS | 25.0% |
| ! | CAACATACTCAACTATAATT+AGG | - | chr1_1:76106280-76106299 | None:intergenic | 25.0% |
| ! | AATAAGTAATCATCATACCA+TGG | - | chr1_1:76106340-76106359 | None:intergenic | 25.0% |
| !! | ATTTGGTTCATGTAATATGT+AGG | + | chr1_1:76106459-76106478 | Msa0044520:intron | 25.0% |
| !! | AAGTTGAATTAGCTTATGTA+AGG | + | chr1_1:76106486-76106505 | Msa0044520:intron | 25.0% |
| !! | AGTTGAATTAGCTTATGTAA+GGG | + | chr1_1:76106487-76106506 | Msa0044520:intron | 25.0% |
| ! | TTCACTACAATTAAATCAAC+AGG | - | chr1_1:76106669-76106688 | None:intergenic | 25.0% |
| ! | TAGATTAAAACTCCTTAATC+TGG | - | chr1_1:76106824-76106843 | None:intergenic | 25.0% |
| !! | AACTTTTAATCATGGATACA+TGG | - | chr1_1:76106931-76106950 | None:intergenic | 25.0% |
| !! | ATGGTTCAAACTTTTAATCA+TGG | - | chr1_1:76106939-76106958 | None:intergenic | 25.0% |
| ! | TGTTATTGCATTAATGAGTT+TGG | - | chr1_1:76106986-76107005 | None:intergenic | 25.0% |
| ! | AACTCATTAATGCAATAACA+TGG | + | chr1_1:76106986-76107005 | Msa0044520:CDS | 25.0% |
| ! | TTCGTCATAAACAGAAAATA+TGG | - | chr1_1:76107232-76107251 | None:intergenic | 25.0% |
| ! | AATGTTAGCAATATATGTCA+AGG | - | chr1_1:76107341-76107360 | None:intergenic | 25.0% |
| ! | TTGAGAAATAAGAATGTTAG+AGG | + | chr1_1:76107426-76107445 | Msa0044520:CDS | 25.0% |
| ! | TTCAATAGTTCAACAATTTG+AGG | - | chr1_1:76107582-76107601 | None:intergenic | 25.0% |
| ! | CAAATTGTTGAACTATTGAA+AGG | + | chr1_1:76107582-76107601 | Msa0044520:CDS | 25.0% |
| ! | TGATTGCAAAATTTATCGTA+CGG | - | chr1_1:76107778-76107797 | None:intergenic | 25.0% |
| ! | GATTTAGATAGAAGATATGA+TGG | + | chr1_1:76108159-76108178 | Msa0044520:CDS | 25.0% |
| ! | AATGGATAAAAGTGATTACT+TGG | + | chr1_1:76108269-76108288 | Msa0044520:CDS | 25.0% |
| ! | AACATTTCGTATATAGAAGA+TGG | + | chr1_1:76108486-76108505 | Msa0044520:CDS | 25.0% |
| CTATTTGTAGAGAGAGAAAA+CGG | + | chr1_1:76105374-76105393 | Msa0044520:CDS | 30.0% | |
| !!! | TTTTCAGTTGATGAATGAGA+AGG | - | chr1_1:76105568-76105587 | None:intergenic | 30.0% |
| AATCATCATCTGAATTCCTA+TGG | - | chr1_1:76105900-76105919 | None:intergenic | 30.0% | |
| GAATTCAGATGATGATTTGA+GGG | + | chr1_1:76105903-76105922 | Msa0044520:CDS | 30.0% | |
| GAGAAGAATAATAAAGAAGG+TGG | + | chr1_1:76106012-76106031 | Msa0044520:CDS | 30.0% | |
| AAGAATAATAAAGAAGGTGG+AGG | + | chr1_1:76106015-76106034 | Msa0044520:CDS | 30.0% | |
| AGAATAATAAAGAAGGTGGA+GGG | + | chr1_1:76106016-76106035 | Msa0044520:CDS | 30.0% | |
| ATGTGGCTAATGAAAATGTT+GGG | + | chr1_1:76106076-76106095 | Msa0044520:CDS | 30.0% | |
| ! | TTCAACTTTTAACATGTCCA+TGG | + | chr1_1:76106320-76106339 | Msa0044520:intron | 30.0% |
| ATTACCATTTACCAACACAT+TGG | + | chr1_1:76106357-76106376 | Msa0044520:intron | 30.0% | |
| ATTTAGTCATATTCCTGCAT+TGG | + | chr1_1:76106411-76106430 | Msa0044520:intron | 30.0% | |
| TTTAGTCATATTCCTGCATT+GGG | + | chr1_1:76106412-76106431 | Msa0044520:intron | 30.0% | |
| ! | AATGTGTCAACATTTTTGCA+TGG | - | chr1_1:76106522-76106541 | None:intergenic | 30.0% |
| GTTGACACATTTATTGATCA+TGG | + | chr1_1:76106531-76106550 | Msa0044520:intron | 30.0% | |
| TGTCAGATCTCAAATCAATT+GGG | + | chr1_1:76106555-76106574 | Msa0044520:intron | 30.0% | |
| TAACATGCACTAAATCAACT+CGG | - | chr1_1:76106643-76106662 | None:intergenic | 30.0% | |
| TCTATGCTCTCAAATCAATA+GGG | - | chr1_1:76106786-76106805 | None:intergenic | 30.0% | |
| ATATGAAGGATTCTTCAAGT+TGG | + | chr1_1:76107058-76107077 | Msa0044520:CDS | 30.0% | |
| ! | TATGAAGGATTCTTCAAGTT+GGG | + | chr1_1:76107059-76107078 | Msa0044520:CDS | 30.0% |
| ! | GATCTATTTGATGATTATGG+AGG | + | chr1_1:76107096-76107115 | Msa0044520:CDS | 30.0% |
| ! | ATTTGATGATTATGGAGGAA+TGG | + | chr1_1:76107101-76107120 | Msa0044520:CDS | 30.0% |
| GGAAGTCATTTATTAACCTT+AGG | + | chr1_1:76107129-76107148 | Msa0044520:CDS | 30.0% | |
| GTCATTTATTAACCTTAGGA+AGG | + | chr1_1:76107133-76107152 | Msa0044520:CDS | 30.0% | |
| ATGGGAAAAGAAATTGTTTG+AGG | + | chr1_1:76107164-76107183 | Msa0044520:CDS | 30.0% | |
| AGAACAAAACAACAATGTGT+TGG | + | chr1_1:76107284-76107303 | Msa0044520:intron | 30.0% | |
| ATATGTCAAGGAACAAAACA+AGG | - | chr1_1:76107329-76107348 | None:intergenic | 30.0% | |
| AGGAGATGATGAATTAAGTA+TGG | + | chr1_1:76107446-76107465 | Msa0044520:CDS | 30.0% | |
| ATATGAAAGATCTGTATGCT+GGG | + | chr1_1:76107484-76107503 | Msa0044520:CDS | 30.0% | |
| ! | ACATGTGAAGTATTTGACTT+CGG | - | chr1_1:76107752-76107771 | None:intergenic | 30.0% |
| ATTGCAAAATTTATCGTACG+GGG | - | chr1_1:76107776-76107795 | None:intergenic | 30.0% | |
| GATTGCAAAATTTATCGTAC+GGG | - | chr1_1:76107777-76107796 | None:intergenic | 30.0% | |
| ! | AAATTTTGCAATCAATCTCG+TGG | + | chr1_1:76107784-76107803 | Msa0044520:CDS | 30.0% |
| TCGAGTAAAATTCAACTTCA+TGG | - | chr1_1:76107930-76107949 | None:intergenic | 30.0% | |
| !! | ACATTGAATGGATTGCAATT+TGG | + | chr1_1:76108363-76108382 | Msa0044520:CDS | 30.0% |
| !! | CATTGAATGGATTGCAATTT+GGG | + | chr1_1:76108364-76108383 | Msa0044520:CDS | 30.0% |
| ATTTCGTATATAGAAGATGG+TGG | + | chr1_1:76108489-76108508 | Msa0044520:CDS | 30.0% | |
| !!! | TTCTTCTTCCTCTAGTTTTG+AGG | - | chr1_1:76105344-76105363 | None:intergenic | 35.0% |
| GTTATAAGGAAAGGTGAAGA+AGG | - | chr1_1:76105517-76105536 | None:intergenic | 35.0% | |
| CTTATAACTTTCCCTCCTAA+GGG | + | chr1_1:76105529-76105548 | Msa0044520:CDS | 35.0% | |
| TTGATGAATGAGAAGGAGAA+GGG | - | chr1_1:76105561-76105580 | None:intergenic | 35.0% | |
| TGCATGTAGAAATACTCACT+TGG | - | chr1_1:76105748-76105767 | None:intergenic | 35.0% | |
| TGATGCATAGGCATATTCAT+AGG | - | chr1_1:76105775-76105794 | None:intergenic | 35.0% | |
| ! | TTTACCCTTTTGACAGTATG+AGG | + | chr1_1:76105854-76105873 | Msa0044520:CDS | 35.0% |
| GGAATTCAGATGATGATTTG+AGG | + | chr1_1:76105902-76105921 | Msa0044520:CDS | 35.0% | |
| GATGTGGCTAATGAAAATGT+TGG | + | chr1_1:76106075-76106094 | Msa0044520:CDS | 35.0% | |
| TGTGGCTAATGAAAATGTTG+GGG | + | chr1_1:76106077-76106096 | Msa0044520:CDS | 35.0% | |
| !! | TGAAGCTTTGAAAGATATCG+AGG | + | chr1_1:76106152-76106171 | Msa0044520:CDS | 35.0% |
| ATATCGAGGACCATTTCATT+AGG | + | chr1_1:76106166-76106185 | Msa0044520:CDS | 35.0% | |
| TATCGAGGACCATTTCATTA+GGG | + | chr1_1:76106167-76106186 | Msa0044520:CDS | 35.0% | |
| ACTCATAAGCCCTAATGAAA+TGG | - | chr1_1:76106179-76106198 | None:intergenic | 35.0% | |
| ! | AATTCCCCTTCATTCTAGTT+TGG | + | chr1_1:76106236-76106255 | Msa0044520:CDS | 35.0% |
| TTCCTCCAAACTAGAATGAA+GGG | - | chr1_1:76106244-76106263 | None:intergenic | 35.0% | |
| TTTCCTCCAAACTAGAATGA+AGG | - | chr1_1:76106245-76106264 | None:intergenic | 35.0% | |
| ! | TCTAGTTTGGAGGAAATCAA+AGG | + | chr1_1:76106249-76106268 | Msa0044520:CDS | 35.0% |
| ! | TGAACCAATGTGTTGGTAAA+TGG | - | chr1_1:76106364-76106383 | None:intergenic | 35.0% |
| ACTAAGATGAACCAATGTGT+TGG | - | chr1_1:76106371-76106390 | None:intergenic | 35.0% | |
| AGACCTGTAGATAGTTGATT+TGG | + | chr1_1:76106442-76106461 | Msa0044520:intron | 35.0% | |
| GAACCAAATCAACTATCTAC+AGG | - | chr1_1:76106448-76106467 | None:intergenic | 35.0% | |
| CTGTCAGATCTCAAATCAAT+TGG | + | chr1_1:76106554-76106573 | Msa0044520:intron | 35.0% | |
| ! | AGCAACTTTAAAAGGTTGTG+TGG | - | chr1_1:76106761-76106780 | None:intergenic | 35.0% |
| ATAGGGTCAGCAACTTTAAA+AGG | - | chr1_1:76106769-76106788 | None:intergenic | 35.0% | |
| GTCTATGCTCTCAAATCAAT+AGG | - | chr1_1:76106787-76106806 | None:intergenic | 35.0% | |
| GCATGACAAAATTGATACTC+TGG | + | chr1_1:76106881-76106900 | Msa0044520:intron | 35.0% | |
| ! | CTTTCTGCATTGATATCAGA+TGG | - | chr1_1:76106958-76106977 | None:intergenic | 35.0% |
| TCTGGTGGTTCAAAATATGA+AGG | + | chr1_1:76107044-76107063 | Msa0044520:CDS | 35.0% | |
| ! | TGATTATGGAGGAATGGATT+CGG | + | chr1_1:76107107-76107126 | Msa0044520:CDS | 35.0% |
| CTTAGGAAGGTTATATGCAT+GGG | + | chr1_1:76107146-76107165 | Msa0044520:CDS | 35.0% | |
| GGAAAAGAAATTGTTTGAGG+AGG | + | chr1_1:76107167-76107186 | Msa0044520:CDS | 35.0% | |
| GAAATTGTTTGAGGAGGTTA+AGG | + | chr1_1:76107173-76107192 | Msa0044520:CDS | 35.0% | |
| GATATGAAAGATCTGTATGC+TGG | + | chr1_1:76107483-76107502 | Msa0044520:CDS | 35.0% | |
| GTTAAGCTGCATTTGGAAAA+TGG | - | chr1_1:76107676-76107695 | None:intergenic | 35.0% | |
| ACAATCGTGGAAAATCATGT+TGG | + | chr1_1:76107696-76107715 | Msa0044520:CDS | 35.0% | |
| TTGCAAAATTTATCGTACGG+GGG | - | chr1_1:76107775-76107794 | None:intergenic | 35.0% | |
| ! | CAATGCCATTTCAAGTCAAT+GGG | + | chr1_1:76107971-76107990 | Msa0044520:CDS | 35.0% |
| TTGCATATTACGAGTAATGG+CGG | - | chr1_1:76107997-76108016 | None:intergenic | 35.0% | |
| TCGTTGCATATTACGAGTAA+TGG | - | chr1_1:76108000-76108019 | None:intergenic | 35.0% | |
| TACTCGTAATATGCAACGAT+TGG | + | chr1_1:76108001-76108020 | Msa0044520:CDS | 35.0% | |
| TGAAAGATGTGAAAGCTCTT+TGG | + | chr1_1:76108082-76108101 | Msa0044520:CDS | 35.0% | |
| TCATAGATCAGAAGAAGAGT+CGG | + | chr1_1:76108227-76108246 | Msa0044520:CDS | 35.0% | |
| TCGTGAAGAAGAATGCTTAA+TGG | + | chr1_1:76108251-76108270 | Msa0044520:CDS | 35.0% | |
| ! | GTACATTTTCTGTGATGCTT+TGG | - | chr1_1:76108424-76108443 | None:intergenic | 35.0% |
| AGTGAAAATAGTGAGAAAGC+TGG | + | chr1_1:76108462-76108481 | Msa0044520:CDS | 35.0% | |
| GTGAAAATAGTGAGAAAGCT+GGG | + | chr1_1:76108463-76108482 | Msa0044520:CDS | 35.0% | |
| GAAAACTGCAACAGCAAAAA+TGG | + | chr1_1:76108522-76108541 | Msa0044520:CDS | 35.0% | |
| GGAGGGAAAGTTATAAGGAA+AGG | - | chr1_1:76105526-76105545 | None:intergenic | 40.0% | |
| CCTTAGGAGGGAAAGTTATA+AGG | - | chr1_1:76105531-76105550 | None:intergenic | 40.0% | |
| CCTTATAACTTTCCCTCCTA+AGG | + | chr1_1:76105528-76105547 | Msa0044520:CDS | 40.0% | |
| ! | GTTGATGAATGAGAAGGAGA+AGG | - | chr1_1:76105562-76105581 | None:intergenic | 40.0% |
| ! | GTGTTTGCTGGAGAAACATA+GGG | - | chr1_1:76105603-76105622 | None:intergenic | 40.0% |
| GATTCATGCTTGGTTTCTGA+TGG | - | chr1_1:76105625-76105644 | None:intergenic | 40.0% | |
| ACAAGCAACAGATTCATGCT+TGG | - | chr1_1:76105635-76105654 | None:intergenic | 40.0% | |
| GTTGCTTGTGACTCATGTAT+TGG | + | chr1_1:76105646-76105665 | Msa0044520:CDS | 40.0% | |
| GGCATAGACATATGATGCAT+AGG | - | chr1_1:76105787-76105806 | None:intergenic | 40.0% | |
| !!! | ACCACAGAGAGATTTTGGTT+GGG | + | chr1_1:76105825-76105844 | Msa0044520:CDS | 40.0% |
| AGGTTATGAATGGCTACCAT+AGG | + | chr1_1:76105881-76105900 | Msa0044520:CDS | 40.0% | |
| AAGGGTAGAACTTGAGCATA+AGG | + | chr1_1:76105972-76105991 | Msa0044520:CDS | 40.0% | |
| ! | AGTTGTGAGTGGTGTTGAAA+CGG | + | chr1_1:76106041-76106060 | Msa0044520:CDS | 40.0% |
| GTGGCTAATGAAAATGTTGG+GGG | + | chr1_1:76106078-76106097 | Msa0044520:CDS | 40.0% | |
| TGGCTAATGAAAATGTTGGG+GGG | + | chr1_1:76106079-76106098 | Msa0044520:CDS | 40.0% | |
| AAAATGTTGGGGGGCAAAAA+GGG | + | chr1_1:76106088-76106107 | Msa0044520:CDS | 40.0% | |
| TTCTTGATACACCTGCAGAA+GGG | + | chr1_1:76106118-76106137 | Msa0044520:CDS | 40.0% | |
| TTCATTAGGGCTTATGAGTC+TGG | + | chr1_1:76106180-76106199 | Msa0044520:CDS | 40.0% | |
| ! | TCTATTAGCCTCAAGCATCT+TGG | - | chr1_1:76106217-76106236 | None:intergenic | 40.0% |
| TCCTCCAAACTAGAATGAAG+GGG | - | chr1_1:76106243-76106262 | None:intergenic | 40.0% | |
| GCTGACAAATCTCCAATTGA+TGG | + | chr1_1:76106617-76106636 | Msa0044520:intron | 40.0% | |
| AAATCAACTCGGCCATCAAT+TGG | - | chr1_1:76106632-76106651 | None:intergenic | 40.0% | |
| TGAATAAGGAACCCTGATGT+AGG | + | chr1_1:76106685-76106704 | Msa0044520:intron | 40.0% | |
| GTTGCAACTTTGCCAGATTA+AGG | + | chr1_1:76106809-76106828 | Msa0044520:intron | 40.0% | |
| TGATGATTGCCTAGATGACA+TGG | - | chr1_1:76107016-76107035 | None:intergenic | 40.0% | |
| ! | GATTATGGAGGAATGGATTC+GGG | + | chr1_1:76107108-76107127 | Msa0044520:CDS | 40.0% |
| CCATGCATATAACCTTCCTA+AGG | - | chr1_1:76107148-76107167 | None:intergenic | 40.0% | |
| CCTTAGGAAGGTTATATGCA+TGG | + | chr1_1:76107145-76107164 | Msa0044520:CDS | 40.0% | |
| TGTTTGAGGAGGTTAAGGTA+AGG | + | chr1_1:76107178-76107197 | Msa0044520:intron | 40.0% | |
| ! | TTGGTGCTTAACTTCTAGTG+TGG | + | chr1_1:76107303-76107322 | Msa0044520:intron | 40.0% |
| TTCAGTGAATTCCTTGCCTT+AGG | + | chr1_1:76107359-76107378 | Msa0044520:intron | 40.0% | |
| CGATTGTGTTAAGCTGCATT+TGG | - | chr1_1:76107683-76107702 | None:intergenic | 40.0% | |
| AATGCAGCTTAACACAATCG+TGG | + | chr1_1:76107683-76107702 | Msa0044520:intron | 40.0% | |
| TTGCAATCAATCTCGTGGAT+TGG | + | chr1_1:76107789-76107808 | Msa0044520:CDS | 40.0% | |
| !! | TACGTATGCTTTTTGAGCTG+CGG | - | chr1_1:76107872-76107891 | None:intergenic | 40.0% |
| !! | CCATTGACTTGAAATGGCAT+TGG | - | chr1_1:76107973-76107992 | None:intergenic | 40.0% |
| ! | CCAATGCCATTTCAAGTCAA+TGG | + | chr1_1:76107970-76107989 | Msa0044520:CDS | 40.0% |
| CTTATCAGGCAACTTTCGTA+AGG | - | chr1_1:76108034-76108053 | None:intergenic | 40.0% | |
| ACGAAAGTTGCCTGATAAGA+CGG | + | chr1_1:76108035-76108054 | Msa0044520:CDS | 40.0% | |
| ATAAAGAGCAGCAACAGAAG+AGG | + | chr1_1:76108115-76108134 | Msa0044520:CDS | 40.0% | |
| GAGAAAACTTGAGGTAGAGA+AGG | + | chr1_1:76108302-76108321 | Msa0044520:CDS | 40.0% | |
| ACACAGAGGATGACATTGAA+TGG | + | chr1_1:76108351-76108370 | Msa0044520:CDS | 40.0% | |
| GTGTGTTGCCTCAAAACTAG+AGG | + | chr1_1:76105333-76105352 | Msa0044520:CDS | 45.0% | |
| ! | GGTGTTTGCTGGAGAAACAT+AGG | - | chr1_1:76105604-76105623 | None:intergenic | 45.0% |
| ! | TGGTTTCTGATGGTGTTTGC+TGG | - | chr1_1:76105615-76105634 | None:intergenic | 45.0% |
| ! | TCACAGTCTTCTGAGGAAGA+GGG | + | chr1_1:76105679-76105698 | Msa0044520:CDS | 45.0% |
| CCAAAATCTCTCTGTGGTGA+AGG | - | chr1_1:76105823-76105842 | None:intergenic | 45.0% | |
| ! | CCTTCACCACAGAGAGATTT+TGG | + | chr1_1:76105820-76105839 | Msa0044520:CDS | 45.0% |
| !! | CACCACAGAGAGATTTTGGT+TGG | + | chr1_1:76105824-76105843 | Msa0044520:CDS | 45.0% |
| TCCCAACCAAAATCTCTCTG+TGG | - | chr1_1:76105829-76105848 | None:intergenic | 45.0% | |
| CTGGCCTCATACTGTCAAAA+GGG | - | chr1_1:76105861-76105880 | None:intergenic | 45.0% | |
| TCTGGCCTCATACTGTCAAA+AGG | - | chr1_1:76105862-76105881 | None:intergenic | 45.0% | |
| ! | TTTTGACAGTATGAGGCCAG+AGG | + | chr1_1:76105861-76105880 | Msa0044520:CDS | 45.0% |
| ATGAGGCCAGAGGTTATGAA+TGG | + | chr1_1:76105871-76105890 | Msa0044520:CDS | 45.0% | |
| TGGTAGCCATTCATAACCTC+TGG | - | chr1_1:76105880-76105899 | None:intergenic | 45.0% | |
| ATGATGATTTGAGGGCAGTG+AGG | + | chr1_1:76105911-76105930 | Msa0044520:CDS | 45.0% | |
| TGATGATTTGAGGGCAGTGA+GGG | + | chr1_1:76105912-76105931 | Msa0044520:CDS | 45.0% | |
| AGAAGGGATTCCAGAGTTAG+AGG | + | chr1_1:76105939-76105958 | Msa0044520:CDS | 45.0% | |
| AGTTAGAGGAGGAAGTGGAA+AGG | + | chr1_1:76105953-76105972 | Msa0044520:CDS | 45.0% | |
| GTTAGAGGAGGAAGTGGAAA+GGG | + | chr1_1:76105954-76105973 | Msa0044520:CDS | 45.0% | |
| GGTAGAACTTGAGCATAAGG+TGG | + | chr1_1:76105975-76105994 | Msa0044520:CDS | 45.0% | |
| AGAACTTGAGCATAAGGTGG+TGG | + | chr1_1:76105978-76105997 | Msa0044520:CDS | 45.0% | |
| GAAAATGTTGGGGGGCAAAA+AGG | + | chr1_1:76106087-76106106 | Msa0044520:CDS | 45.0% | |
| GTTCTTGATACACCTGCAGA+AGG | + | chr1_1:76106117-76106136 | Msa0044520:CDS | 45.0% | |
| TAGGGCTTATGAGTCTGGTA+AGG | + | chr1_1:76106185-76106204 | Msa0044520:CDS | 45.0% | |
| AGGGCTTATGAGTCTGGTAA+GGG | + | chr1_1:76106186-76106205 | Msa0044520:CDS | 45.0% | |
| !! | TCCCCTTCATTCTAGTTTGG+AGG | + | chr1_1:76106239-76106258 | Msa0044520:CDS | 45.0% |
| ACCCTGATGTAGGAATGTGA+TGG | + | chr1_1:76106695-76106714 | Msa0044520:intron | 45.0% | |
| GCCATCACATTCCTACATCA+GGG | - | chr1_1:76106699-76106718 | None:intergenic | 45.0% | |
| AGCCATCACATTCCTACATC+AGG | - | chr1_1:76106700-76106719 | None:intergenic | 45.0% | |
| GATGTAGGAATGTGATGGCT+AGG | + | chr1_1:76106700-76106719 | Msa0044520:intron | 45.0% | |
| GAGCATGCACTTGAATAGAC+AGG | + | chr1_1:76106859-76106878 | Msa0044520:intron | 45.0% | |
| CATGGAAGTCCATGTCATCT+AGG | + | chr1_1:76107004-76107023 | Msa0044520:CDS | 45.0% | |
| GCAATCATCATGCAAGAGTC+TGG | + | chr1_1:76107026-76107045 | Msa0044520:CDS | 45.0% | |
| ATCATCATGCAAGAGTCTGG+TGG | + | chr1_1:76107029-76107048 | Msa0044520:CDS | 45.0% | |
| !! | GAAGGATTCTTCAAGTTGGG+TGG | + | chr1_1:76107062-76107081 | Msa0044520:CDS | 45.0% |
| AGATCTGTATGCTGGGATCT+TGG | + | chr1_1:76107491-76107510 | Msa0044520:CDS | 45.0% | |
| TTGAAGCCGAGCTTCATCAT+TGG | + | chr1_1:76107824-76107843 | Msa0044520:CDS | 45.0% | |
| !! | GACTTGAAATGGCATTGGCA+TGG | - | chr1_1:76107968-76107987 | None:intergenic | 45.0% |
| GTGAGTGTTACCGTCTTATC+AGG | - | chr1_1:76108048-76108067 | None:intergenic | 45.0% | |
| GTGATTACTTGGAGACACTG+AGG | + | chr1_1:76108280-76108299 | Msa0044520:CDS | 45.0% | |
| GACACTGAGGAGAAAACTTG+AGG | + | chr1_1:76108293-76108312 | Msa0044520:CDS | 45.0% | |
| GTTGCATGCAAGAAACACAG+AGG | + | chr1_1:76108337-76108356 | Msa0044520:CDS | 45.0% | |
| ! | AGAAGATGGTGGTTGCAATG+TGG | + | chr1_1:76108500-76108519 | Msa0044520:CDS | 45.0% |
| AAGGGTCAAGACCCTTAGGA+GGG | - | chr1_1:76105543-76105562 | None:intergenic | 50.0% | |
| CTCAGAAGACTGTGAGGTTG+TGG | - | chr1_1:76105674-76105693 | None:intergenic | 50.0% | |
| CACAACCTCACAGTCTTCTG+AGG | + | chr1_1:76105672-76105691 | Msa0044520:CDS | 50.0% | |
| CTCTTCCTCAGAAGACTGTG+AGG | - | chr1_1:76105680-76105699 | None:intergenic | 50.0% | |
| ! | CTCACAGTCTTCTGAGGAAG+AGG | + | chr1_1:76105678-76105697 | Msa0044520:CDS | 50.0% |
| !! | TGTGGTGAAGGCATTGAAGG+TGG | - | chr1_1:76105811-76105830 | None:intergenic | 50.0% |
| !! | CTCTGTGGTGAAGGCATTGA+AGG | - | chr1_1:76105814-76105833 | None:intergenic | 50.0% |
| AGGGATTCCAGAGTTAGAGG+AGG | + | chr1_1:76105942-76105961 | Msa0044520:CDS | 50.0% | |
| TCCAGAGTTAGAGGAGGAAG+TGG | + | chr1_1:76105948-76105967 | Msa0044520:CDS | 50.0% | |
| TCCACTTCCTCCTCTAACTC+TGG | - | chr1_1:76105952-76105971 | None:intergenic | 50.0% | |
| GGTCTTAAGAAGCCCAATGC+AGG | - | chr1_1:76106427-76106446 | None:intergenic | 50.0% | |
| GTGAATTCCTTGCCTTAGGC+TGG | + | chr1_1:76107363-76107382 | Msa0044520:intron | 50.0% | |
| GCATACGTAGAAGCTCTGCA+TGG | + | chr1_1:76107883-76107902 | Msa0044520:CDS | 50.0% | |
| ACGTAGAAGCTCTGCATGGA+TGG | + | chr1_1:76107887-76107906 | Msa0044520:CDS | 50.0% | |
| GAAGGGTCAAGACCCTTAGG+AGG | - | chr1_1:76105544-76105563 | None:intergenic | 55.0% | |
| GGAGAAGGGTCAAGACCCTT+AGG | - | chr1_1:76105547-76105566 | None:intergenic | 55.0% | |
| GAGGAAGAGGGAGAGAGAGA+AGG | + | chr1_1:76105691-76105710 | Msa0044520:CDS | 55.0% | |
| GAGGGAGAGAGAGAAGGTGA+AGG | + | chr1_1:76105697-76105716 | Msa0044520:CDS | 55.0% | |
| !! | GGTGAAGGCATTGAAGGTGG+TGG | - | chr1_1:76105808-76105827 | None:intergenic | 55.0% |
| TGATTTGAGGGCAGTGAGGG+AGG | + | chr1_1:76105915-76105934 | Msa0044520:CDS | 55.0% | |
| GGTGGAGGGAAAGTTGTGAG+TGG | + | chr1_1:76106030-76106049 | Msa0044520:CDS | 55.0% | |
| ! | GAGTGGTGTTGAAACGGCGA+AGG | + | chr1_1:76106047-76106066 | Msa0044520:CDS | 55.0% |
| TGTTGAAACGGCGAAGGCTG+TGG | + | chr1_1:76106053-76106072 | Msa0044520:CDS | 55.0% | |
| AGCAACTCTCTCCCTTCTGC+AGG | - | chr1_1:76106132-76106151 | None:intergenic | 55.0% | |
| GGGTGTGACCAAGATGCTTG+AGG | + | chr1_1:76106206-76106225 | Msa0044520:CDS | 55.0% | |
| GCTATCTCCAGCCTAAGGCA+AGG | - | chr1_1:76107373-76107392 | None:intergenic | 55.0% | |
| CTTAGGCTGGAGATAGCACG+CGG | + | chr1_1:76107376-76107395 | Msa0044520:intron | 55.0% | |
| CGCACGCCAATGATGAAGCT+CGG | - | chr1_1:76107833-76107852 | None:intergenic | 55.0% | |
| !! | GGCGGCCCATTGACTTGAAA+TGG | - | chr1_1:76107979-76107998 | None:intergenic | 55.0% |
| AGGGCAGTGAGGGAGGAAGA+AGG | + | chr1_1:76105922-76105941 | Msa0044520:CDS | 60.0% | |
| GGGCAGTGAGGGAGGAAGAA+GGG | + | chr1_1:76105923-76105942 | Msa0044520:CDS | 60.0% | |
| AACGGCGAAGGCTGTGGATG+TGG | + | chr1_1:76106059-76106078 | Msa0044520:CDS | 60.0% | |
| CGCGTGCTATCTCCAGCCTA+AGG | - | chr1_1:76107378-76107397 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 76105328 | 76108551 | 76105328 | ID=Msa0044520;Name=Msa0044520 |
| chr1_1 | mRNA | 76105328 | 76108551 | 76105328 | ID=Msa0044520-mRNA-1;Parent=Msa0044520;Name=Msa0044520-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.25|1|1|1|4|0|749 |
| chr1_1 | exon | 76105328 | 76106270 | 76105328 | ID=Msa0044520-mRNA-1:exon:25759;Parent=Msa0044520-mRNA-1 |
| chr1_1 | exon | 76106974 | 76107194 | 76106974 | ID=Msa0044520-mRNA-1:exon:25760;Parent=Msa0044520-mRNA-1 |
| chr1_1 | exon | 76107381 | 76107604 | 76107381 | ID=Msa0044520-mRNA-1:exon:25761;Parent=Msa0044520-mRNA-1 |
| chr1_1 | exon | 76107690 | 76108551 | 76107690 | ID=Msa0044520-mRNA-1:exon:25762;Parent=Msa0044520-mRNA-1 |
| chr1_1 | CDS | 76105328 | 76106270 | 76105328 | ID=Msa0044520-mRNA-1:cds;Parent=Msa0044520-mRNA-1 |
| chr1_1 | CDS | 76106974 | 76107194 | 76106974 | ID=Msa0044520-mRNA-1:cds;Parent=Msa0044520-mRNA-1 |
| chr1_1 | CDS | 76107381 | 76107604 | 76107381 | ID=Msa0044520-mRNA-1:cds;Parent=Msa0044520-mRNA-1 |
| chr1_1 | CDS | 76107690 | 76108551 | 76107690 | ID=Msa0044520-mRNA-1:cds;Parent=Msa0044520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
