Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183740 | KEH44316.1 | 96.813 | 251 | 8 | 0 | 1 | 251 | 1 | 251 | 1.27e-180 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183740 | A0A072VRL9 | 96.813 | 251 | 8 | 0 | 1 | 251 | 1 | 251 | 0.0 | 506 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0183740 | Msa1369710 | 0.900913 | 4.549056e-78 | -8.615850e-47 |
| Msa0183740 | Msa1460390 | 0.844356 | 7.952041e-59 | -8.615850e-47 |
| Msa0183740 | Msa1465010 | 0.894034 | 3.601778e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183740 | MtrunA17_Chr1g0210731 | 96.813 | 251 | 8 | 0 | 1 | 251 | 55 | 305 | 0.0 | 504 |
| Msa0183740 | MtrunA17_Chr1g0210721 | 67.470 | 249 | 69 | 5 | 1 | 246 | 56 | 295 | 1.66e-111 | 322 |
| Msa0183740 | MtrunA17_Chr2g0287431 | 56.967 | 244 | 98 | 6 | 8 | 249 | 63 | 301 | 6.22e-85 | 256 |
| Msa0183740 | MtrunA17_Chr4g0033971 | 34.184 | 196 | 121 | 3 | 34 | 222 | 84 | 278 | 3.26e-34 | 124 |
| Msa0183740 | MtrunA17_Chr8g0369411 | 33.690 | 187 | 118 | 3 | 26 | 212 | 82 | 262 | 2.32e-26 | 103 |
| Msa0183740 | MtrunA17_Chr5g0409571 | 29.612 | 206 | 133 | 5 | 27 | 232 | 83 | 276 | 6.45e-24 | 97.1 |
| Msa0183740 | MtrunA17_Chr7g0227861 | 32.335 | 167 | 111 | 2 | 71 | 235 | 100 | 266 | 2.66e-20 | 87.8 |
| Msa0183740 | MtrunA17_Chr8g0369401 | 33.333 | 138 | 87 | 3 | 75 | 212 | 32 | 164 | 2.02e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183740 | AT1G55230.1 | 57.143 | 238 | 100 | 2 | 1 | 238 | 56 | 291 | 5.18e-94 | 278 |
| Msa0183740 | AT1G55240.1 | 55.462 | 238 | 105 | 1 | 1 | 238 | 56 | 292 | 8.23e-90 | 268 |
| Msa0183740 | AT5G19870.1 | 54.206 | 214 | 96 | 1 | 10 | 223 | 65 | 276 | 2.01e-85 | 256 |
| Msa0183740 | AT1G49470.1 | 33.663 | 202 | 119 | 3 | 36 | 227 | 83 | 279 | 1.84e-29 | 112 |
| Msa0183740 | AT1G32127.2 | 34.000 | 150 | 95 | 3 | 26 | 175 | 82 | 227 | 4.15e-21 | 89.7 |
| Msa0183740 | AT1G32127.1 | 34.000 | 150 | 95 | 3 | 26 | 175 | 82 | 227 | 4.15e-21 | 89.7 |
| Msa0183740 | AT3G01360.2 | 28.161 | 174 | 122 | 2 | 41 | 211 | 95 | 268 | 9.82e-16 | 75.9 |
| Msa0183740 | AT3G01360.1 | 28.161 | 174 | 122 | 2 | 41 | 211 | 95 | 268 | 9.82e-16 | 75.9 |
Find 51 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGCCTGTGGTGATCTTT+TGG | 0.244017 | 1_4:+72735938 | None:intergenic |
| AGGTTTGTGGCTTATGTTCA+TGG | 0.293266 | 1_4:-72736247 | Msa0183740:CDS |
| CAATTCAGCTGGTTCTTGAT+TGG | 0.309654 | 1_4:-72736099 | Msa0183740:CDS |
| CTTACAACCCTTATGGGAAT+TGG | 0.312435 | 1_4:-72736324 | Msa0183740:CDS |
| GAAGGAATGGTACCATCATT+AGG | 0.341448 | 1_4:+72736588 | None:intergenic |
| TCAAAACTTGCAGTAAATAA+TGG | 0.355405 | 1_4:+72736361 | None:intergenic |
| AAATGAAATTACTCATTTGC+TGG | 0.360728 | 1_4:-72736460 | Msa0183740:CDS |
| TGTGTCCTTCTACTTGATTA+TGG | 0.364513 | 1_4:-72736061 | Msa0183740:CDS |
| TGGTTATCCAATGAGCTTCT+TGG | 0.366591 | 1_4:-72736304 | Msa0183740:CDS |
| TTGATTATGGCTGTAAGTTA+TGG | 0.394009 | 1_4:-72736048 | Msa0183740:CDS |
| TGGATAACCAATTCCCATAA+GGG | 0.413010 | 1_4:+72736317 | None:intergenic |
| CAAGTTATTCAGATTTGCTC+TGG | 0.427300 | 1_4:+72735916 | None:intergenic |
| AGAGATCACATGGGTATAGA+AGG | 0.434296 | 1_4:-72736390 | Msa0183740:CDS |
| TTGGATAACCAATTCCCATA+AGG | 0.437321 | 1_4:+72736316 | None:intergenic |
| GCATAACCTTCCAAGGTTTG+TGG | 0.438782 | 1_4:-72736260 | Msa0183740:CDS |
| TACAGCCATAATCAAGTAGA+AGG | 0.441076 | 1_4:+72736056 | None:intergenic |
| GGTTTGTGGCTTATGTTCAT+GGG | 0.442596 | 1_4:-72736246 | Msa0183740:CDS |
| AAACTCACCAAGAAGCTCAT+TGG | 0.454952 | 1_4:+72736297 | None:intergenic |
| TGGTGAATCTTCAATTCAGC+TGG | 0.455765 | 1_4:-72736110 | Msa0183740:CDS |
| CAACTTTGAACACTCTTCCA+TGG | 0.473299 | 1_4:-72736553 | Msa0183740:CDS |
| AAGGAATGGTACCATCATTA+GGG | 0.479670 | 1_4:+72736589 | None:intergenic |
| GTACCATCATTAGGGTCAAA+TGG | 0.486202 | 1_4:+72736597 | None:intergenic |
| CAACCTTTCGGTTCAAAACC+AGG | 0.497142 | 1_4:+72736207 | None:intergenic |
| AGTTTCGTAAAGCAACCTTT+CGG | 0.505192 | 1_4:+72736195 | None:intergenic |
| GTGGAGATGGTTGGAAGGAA+TGG | 0.517817 | 1_4:+72736575 | None:intergenic |
| TGAACATAAGCCACAAACCT+TGG | 0.521512 | 1_4:+72736250 | None:intergenic |
| TCTGTTAGCATAACCTTCCA+AGG | 0.527914 | 1_4:-72736267 | Msa0183740:CDS |
| AGTGTTCAAAGTTGTGGAGA+TGG | 0.532689 | 1_4:+72736562 | None:intergenic |
| GAGGAACATTATCGTGAAGA+TGG | 0.535159 | 1_4:-72735991 | Msa0183740:CDS |
| TGGAAGAGTGTTCAAAGTTG+TGG | 0.544369 | 1_4:+72736556 | None:intergenic |
| TTCAAAGTTGTGGAGATGGT+TGG | 0.544658 | 1_4:+72736566 | None:intergenic |
| CAACCATTTGACCCTAATGA+TGG | 0.545080 | 1_4:-72736600 | Msa0183740:CDS |
| TGTTAAGTGCAGTGATGAAA+AGG | 0.547706 | 1_4:-72736154 | Msa0183740:CDS |
| CATAAGCCACAAACCTTGGA+AGG | 0.549282 | 1_4:+72736254 | None:intergenic |
| TCTTCATCGTGCTGTAGCGT+TGG | 0.552622 | 1_4:-72736130 | Msa0183740:CDS |
| TAGGGTCAAATGGTTGGTGA+TGG | 0.562396 | 1_4:+72736607 | None:intergenic |
| GTTTGTGGCTTATGTTCATG+GGG | 0.570855 | 1_4:-72736245 | Msa0183740:CDS |
| TCTTCATTCAAGAGATCACA+TGG | 0.573103 | 1_4:-72736400 | Msa0183740:CDS |
| CATCATTAGGGTCAAATGGT+TGG | 0.575638 | 1_4:+72736601 | None:intergenic |
| GATTTGCTCTGGCTTGCCTG+TGG | 0.582887 | 1_4:+72735927 | None:intergenic |
| GTATGTTTCACTGATGATGA+AGG | 0.586326 | 1_4:-72736013 | Msa0183740:CDS |
| AAGTTGTGGAGATGGTTGGA+AGG | 0.588161 | 1_4:+72736570 | None:intergenic |
| CAATGCCAAAAGATCACCAC+AGG | 0.593405 | 1_4:-72735943 | Msa0183740:CDS |
| GACTAAGAAAGACAAAGCCA+TGG | 0.596145 | 1_4:+72736536 | None:intergenic |
| GGTTGCTTTACGAAACTAGA+GGG | 0.605869 | 1_4:-72736189 | Msa0183740:CDS |
| AAATTGTTGTGCAAATGCTA+TGG | 0.610782 | 1_4:+72736434 | None:intergenic |
| TCAAATGGTTGGTGATGGAG+AGG | 0.619042 | 1_4:+72736612 | None:intergenic |
| AGGAGCTATGAAGAGTTCCA+TGG | 0.640804 | 1_4:+72736632 | None:intergenic |
| TGTTTCACTGATGATGAAGG+AGG | 0.670252 | 1_4:-72736010 | Msa0183740:CDS |
| AGGTTGCTTTACGAAACTAG+AGG | 0.685393 | 1_4:-72736190 | Msa0183740:CDS |
| CTTCATTCAAGAGATCACAT+GGG | 0.751652 | 1_4:-72736399 | Msa0183740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTCTATCAAGAATTA+TGG | + | chr1_4:72736084-72736103 | None:intergenic | 20.0% |
| !!! | TGATTTTCTATCAAGAATTA+TGG | + | chr1_4:72736084-72736103 | None:intergenic | 20.0% |
| ! | AAATGAAATTACTCATTTGC+TGG | - | chr1_4:72736121-72736140 | Msa0183740:CDS | 25.0% |
| ! | TCAAAACTTGCAGTAAATAA+TGG | + | chr1_4:72736223-72736242 | None:intergenic | 25.0% |
| ! | AAATGAAATTACTCATTTGC+TGG | - | chr1_4:72736121-72736140 | Msa0183740:CDS | 25.0% |
| ! | TCAAAACTTGCAGTAAATAA+TGG | + | chr1_4:72736223-72736242 | None:intergenic | 25.0% |
| ! | TTGCATTATTTTCATAGCCA+TGG | - | chr1_4:72735932-72735951 | Msa0183740:CDS | 30.0% |
| AAATTGTTGTGCAAATGCTA+TGG | + | chr1_4:72736150-72736169 | None:intergenic | 30.0% | |
| ! | TTGTTTTCTTACAACCCTTA+TGG | - | chr1_4:72736250-72736269 | Msa0183740:CDS | 30.0% |
| ! | TGTTTTCTTACAACCCTTAT+GGG | - | chr1_4:72736251-72736270 | Msa0183740:CDS | 30.0% |
| TTGATTATGGCTGTAAGTTA+TGG | - | chr1_4:72736533-72736552 | Msa0183740:CDS | 30.0% | |
| ! | TTGCATTATTTTCATAGCCA+TGG | - | chr1_4:72735932-72735951 | Msa0183740:CDS | 30.0% |
| AAATTGTTGTGCAAATGCTA+TGG | + | chr1_4:72736150-72736169 | None:intergenic | 30.0% | |
| ! | TTGTTTTCTTACAACCCTTA+TGG | - | chr1_4:72736250-72736269 | Msa0183740:CDS | 30.0% |
| ! | TGTTTTCTTACAACCCTTAT+GGG | - | chr1_4:72736251-72736270 | Msa0183740:CDS | 30.0% |
| TTGATTATGGCTGTAAGTTA+TGG | - | chr1_4:72736533-72736552 | Msa0183740:CDS | 30.0% | |
| AAGGAATGGTACCATCATTA+GGG | + | chr1_4:72735995-72736014 | None:intergenic | 35.0% | |
| TCTTCATTCAAGAGATCACA+TGG | - | chr1_4:72736181-72736200 | Msa0183740:CDS | 35.0% | |
| CTTCATTCAAGAGATCACAT+GGG | - | chr1_4:72736182-72736201 | Msa0183740:CDS | 35.0% | |
| TGGATAACCAATTCCCATAA+GGG | + | chr1_4:72736267-72736286 | None:intergenic | 35.0% | |
| TTGGATAACCAATTCCCATA+AGG | + | chr1_4:72736268-72736287 | None:intergenic | 35.0% | |
| AGTTTCGTAAAGCAACCTTT+CGG | + | chr1_4:72736389-72736408 | None:intergenic | 35.0% | |
| TGTTAAGTGCAGTGATGAAA+AGG | - | chr1_4:72736427-72736446 | Msa0183740:CDS | 35.0% | |
| TGTGTCCTTCTACTTGATTA+TGG | - | chr1_4:72736520-72736539 | Msa0183740:CDS | 35.0% | |
| TACAGCCATAATCAAGTAGA+AGG | + | chr1_4:72736528-72736547 | None:intergenic | 35.0% | |
| ! | GTATGTTTCACTGATGATGA+AGG | - | chr1_4:72736568-72736587 | Msa0183740:CDS | 35.0% |
| AAGGAATGGTACCATCATTA+GGG | + | chr1_4:72735995-72736014 | None:intergenic | 35.0% | |
| TCTTCATTCAAGAGATCACA+TGG | - | chr1_4:72736181-72736200 | Msa0183740:CDS | 35.0% | |
| CTTCATTCAAGAGATCACAT+GGG | - | chr1_4:72736182-72736201 | Msa0183740:CDS | 35.0% | |
| TGGATAACCAATTCCCATAA+GGG | + | chr1_4:72736267-72736286 | None:intergenic | 35.0% | |
| TTGGATAACCAATTCCCATA+AGG | + | chr1_4:72736268-72736287 | None:intergenic | 35.0% | |
| AGTTTCGTAAAGCAACCTTT+CGG | + | chr1_4:72736389-72736408 | None:intergenic | 35.0% | |
| TGTTAAGTGCAGTGATGAAA+AGG | - | chr1_4:72736427-72736446 | Msa0183740:CDS | 35.0% | |
| TGTGTCCTTCTACTTGATTA+TGG | - | chr1_4:72736520-72736539 | Msa0183740:CDS | 35.0% | |
| TACAGCCATAATCAAGTAGA+AGG | + | chr1_4:72736528-72736547 | None:intergenic | 35.0% | |
| ! | GTATGTTTCACTGATGATGA+AGG | - | chr1_4:72736568-72736587 | Msa0183740:CDS | 35.0% |
| CATCATTAGGGTCAAATGGT+TGG | + | chr1_4:72735983-72736002 | None:intergenic | 40.0% | |
| CAACCATTTGACCCTAATGA+TGG | - | chr1_4:72735981-72736000 | Msa0183740:CDS | 40.0% | |
| GTACCATCATTAGGGTCAAA+TGG | + | chr1_4:72735987-72736006 | None:intergenic | 40.0% | |
| GAAGGAATGGTACCATCATT+AGG | + | chr1_4:72735996-72736015 | None:intergenic | 40.0% | |
| TTCAAAGTTGTGGAGATGGT+TGG | + | chr1_4:72736018-72736037 | None:intergenic | 40.0% | |
| AGTGTTCAAAGTTGTGGAGA+TGG | + | chr1_4:72736022-72736041 | None:intergenic | 40.0% | |
| !! | TGGAAGAGTGTTCAAAGTTG+TGG | + | chr1_4:72736028-72736047 | None:intergenic | 40.0% |
| CAACTTTGAACACTCTTCCA+TGG | - | chr1_4:72736028-72736047 | Msa0183740:CDS | 40.0% | |
| GACTAAGAAAGACAAAGCCA+TGG | + | chr1_4:72736048-72736067 | None:intergenic | 40.0% | |
| AGAGATCACATGGGTATAGA+AGG | - | chr1_4:72736191-72736210 | Msa0183740:CDS | 40.0% | |
| CTTACAACCCTTATGGGAAT+TGG | - | chr1_4:72736257-72736276 | Msa0183740:CDS | 40.0% | |
| TGGTTATCCAATGAGCTTCT+TGG | - | chr1_4:72736277-72736296 | Msa0183740:CDS | 40.0% | |
| AAACTCACCAAGAAGCTCAT+TGG | + | chr1_4:72736287-72736306 | None:intergenic | 40.0% | |
| TCTGTTAGCATAACCTTCCA+AGG | - | chr1_4:72736314-72736333 | Msa0183740:CDS | 40.0% | |
| TGAACATAAGCCACAAACCT+TGG | + | chr1_4:72736334-72736353 | None:intergenic | 40.0% | |
| AGGTTTGTGGCTTATGTTCA+TGG | - | chr1_4:72736334-72736353 | Msa0183740:CDS | 40.0% | |
| GGTTTGTGGCTTATGTTCAT+GGG | - | chr1_4:72736335-72736354 | Msa0183740:CDS | 40.0% | |
| GTTTGTGGCTTATGTTCATG+GGG | - | chr1_4:72736336-72736355 | Msa0183740:CDS | 40.0% | |
| ! | AGGTTGCTTTACGAAACTAG+AGG | - | chr1_4:72736391-72736410 | Msa0183740:CDS | 40.0% |
| ! | GGTTGCTTTACGAAACTAGA+GGG | - | chr1_4:72736392-72736411 | Msa0183740:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | - | chr1_4:72736471-72736490 | Msa0183740:CDS | 40.0% | |
| ! | CAATTCAGCTGGTTCTTGAT+TGG | - | chr1_4:72736482-72736501 | Msa0183740:CDS | 40.0% |
| ! | TGTTTCACTGATGATGAAGG+AGG | - | chr1_4:72736571-72736590 | Msa0183740:CDS | 40.0% |
| GAGGAACATTATCGTGAAGA+TGG | - | chr1_4:72736590-72736609 | Msa0183740:CDS | 40.0% | |
| ! | TGTGGTGATCTTTTGGCATT+GGG | + | chr1_4:72736639-72736658 | None:intergenic | 40.0% |
| CATCATTAGGGTCAAATGGT+TGG | + | chr1_4:72735983-72736002 | None:intergenic | 40.0% | |
| CAACCATTTGACCCTAATGA+TGG | - | chr1_4:72735981-72736000 | Msa0183740:CDS | 40.0% | |
| GTACCATCATTAGGGTCAAA+TGG | + | chr1_4:72735987-72736006 | None:intergenic | 40.0% | |
| GAAGGAATGGTACCATCATT+AGG | + | chr1_4:72735996-72736015 | None:intergenic | 40.0% | |
| TTCAAAGTTGTGGAGATGGT+TGG | + | chr1_4:72736018-72736037 | None:intergenic | 40.0% | |
| AGTGTTCAAAGTTGTGGAGA+TGG | + | chr1_4:72736022-72736041 | None:intergenic | 40.0% | |
| !! | TGGAAGAGTGTTCAAAGTTG+TGG | + | chr1_4:72736028-72736047 | None:intergenic | 40.0% |
| CAACTTTGAACACTCTTCCA+TGG | - | chr1_4:72736028-72736047 | Msa0183740:CDS | 40.0% | |
| GACTAAGAAAGACAAAGCCA+TGG | + | chr1_4:72736048-72736067 | None:intergenic | 40.0% | |
| AGAGATCACATGGGTATAGA+AGG | - | chr1_4:72736191-72736210 | Msa0183740:CDS | 40.0% | |
| CTTACAACCCTTATGGGAAT+TGG | - | chr1_4:72736257-72736276 | Msa0183740:CDS | 40.0% | |
| TGGTTATCCAATGAGCTTCT+TGG | - | chr1_4:72736277-72736296 | Msa0183740:CDS | 40.0% | |
| AAACTCACCAAGAAGCTCAT+TGG | + | chr1_4:72736287-72736306 | None:intergenic | 40.0% | |
| TCTGTTAGCATAACCTTCCA+AGG | - | chr1_4:72736314-72736333 | Msa0183740:CDS | 40.0% | |
| TGAACATAAGCCACAAACCT+TGG | + | chr1_4:72736334-72736353 | None:intergenic | 40.0% | |
| AGGTTTGTGGCTTATGTTCA+TGG | - | chr1_4:72736334-72736353 | Msa0183740:CDS | 40.0% | |
| GGTTTGTGGCTTATGTTCAT+GGG | - | chr1_4:72736335-72736354 | Msa0183740:CDS | 40.0% | |
| GTTTGTGGCTTATGTTCATG+GGG | - | chr1_4:72736336-72736355 | Msa0183740:CDS | 40.0% | |
| ! | AGGTTGCTTTACGAAACTAG+AGG | - | chr1_4:72736391-72736410 | Msa0183740:CDS | 40.0% |
| ! | GGTTGCTTTACGAAACTAGA+GGG | - | chr1_4:72736392-72736411 | Msa0183740:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | - | chr1_4:72736471-72736490 | Msa0183740:CDS | 40.0% | |
| ! | CAATTCAGCTGGTTCTTGAT+TGG | - | chr1_4:72736482-72736501 | Msa0183740:CDS | 40.0% |
| ! | TGTTTCACTGATGATGAAGG+AGG | - | chr1_4:72736571-72736590 | Msa0183740:CDS | 40.0% |
| GAGGAACATTATCGTGAAGA+TGG | - | chr1_4:72736590-72736609 | Msa0183740:CDS | 40.0% | |
| ! | TGTGGTGATCTTTTGGCATT+GGG | + | chr1_4:72736639-72736658 | None:intergenic | 40.0% |
| AGGAGCTATGAAGAGTTCCA+TGG | + | chr1_4:72735952-72735971 | None:intergenic | 45.0% | |
| !! | TCAAATGGTTGGTGATGGAG+AGG | + | chr1_4:72735972-72735991 | None:intergenic | 45.0% |
| !! | TAGGGTCAAATGGTTGGTGA+TGG | + | chr1_4:72735977-72735996 | None:intergenic | 45.0% |
| AAGTTGTGGAGATGGTTGGA+AGG | + | chr1_4:72736014-72736033 | None:intergenic | 45.0% | |
| GCATAACCTTCCAAGGTTTG+TGG | - | chr1_4:72736321-72736340 | Msa0183740:CDS | 45.0% | |
| CATAAGCCACAAACCTTGGA+AGG | + | chr1_4:72736330-72736349 | None:intergenic | 45.0% | |
| !!! | ACACCTGGTTTTGAACCGAA+AGG | - | chr1_4:72736371-72736390 | Msa0183740:CDS | 45.0% |
| CAACCTTTCGGTTCAAAACC+AGG | + | chr1_4:72736377-72736396 | None:intergenic | 45.0% | |
| ! | CTGTGGTGATCTTTTGGCAT+TGG | + | chr1_4:72736640-72736659 | None:intergenic | 45.0% |
| CAATGCCAAAAGATCACCAC+AGG | - | chr1_4:72736638-72736657 | Msa0183740:CDS | 45.0% | |
| AGGAGCTATGAAGAGTTCCA+TGG | + | chr1_4:72735952-72735971 | None:intergenic | 45.0% | |
| !! | TCAAATGGTTGGTGATGGAG+AGG | + | chr1_4:72735972-72735991 | None:intergenic | 45.0% |
| !! | TAGGGTCAAATGGTTGGTGA+TGG | + | chr1_4:72735977-72735996 | None:intergenic | 45.0% |
| AAGTTGTGGAGATGGTTGGA+AGG | + | chr1_4:72736014-72736033 | None:intergenic | 45.0% | |
| GCATAACCTTCCAAGGTTTG+TGG | - | chr1_4:72736321-72736340 | Msa0183740:CDS | 45.0% | |
| CATAAGCCACAAACCTTGGA+AGG | + | chr1_4:72736330-72736349 | None:intergenic | 45.0% | |
| !!! | ACACCTGGTTTTGAACCGAA+AGG | - | chr1_4:72736371-72736390 | Msa0183740:CDS | 45.0% |
| CAACCTTTCGGTTCAAAACC+AGG | + | chr1_4:72736377-72736396 | None:intergenic | 45.0% | |
| ! | CTGTGGTGATCTTTTGGCAT+TGG | + | chr1_4:72736640-72736659 | None:intergenic | 45.0% |
| CAATGCCAAAAGATCACCAC+AGG | - | chr1_4:72736638-72736657 | Msa0183740:CDS | 45.0% | |
| GTGGAGATGGTTGGAAGGAA+TGG | + | chr1_4:72736009-72736028 | None:intergenic | 50.0% | |
| !! | GGGCTCATGCTTTTTACACC+TGG | - | chr1_4:72736356-72736375 | Msa0183740:CDS | 50.0% |
| TCTTCATCGTGCTGTAGCGT+TGG | - | chr1_4:72736451-72736470 | Msa0183740:CDS | 50.0% | |
| ! | GCTTGCCTGTGGTGATCTTT+TGG | + | chr1_4:72736646-72736665 | None:intergenic | 50.0% |
| GTGGAGATGGTTGGAAGGAA+TGG | + | chr1_4:72736009-72736028 | None:intergenic | 50.0% | |
| !! | GGGCTCATGCTTTTTACACC+TGG | - | chr1_4:72736356-72736375 | Msa0183740:CDS | 50.0% |
| TCTTCATCGTGCTGTAGCGT+TGG | - | chr1_4:72736451-72736470 | Msa0183740:CDS | 50.0% | |
| ! | GCTTGCCTGTGGTGATCTTT+TGG | + | chr1_4:72736646-72736665 | None:intergenic | 50.0% |
| ! | GATTTGCTCTGGCTTGCCTG+TGG | + | chr1_4:72736657-72736676 | None:intergenic | 55.0% |
| ! | GATTTGCTCTGGCTTGCCTG+TGG | + | chr1_4:72736657-72736676 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 72735924 | 72736679 | 72735924 | ID=Msa0183740;Name=Msa0183740 |
| chr1_4 | mRNA | 72735924 | 72736679 | 72735924 | ID=Msa0183740-mRNA-1;Parent=Msa0183740;Name=Msa0183740-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|251 |
| chr1_4 | exon | 72735924 | 72736679 | 72735924 | ID=Msa0183740-mRNA-1:exon:24687;Parent=Msa0183740-mRNA-1 |
| chr1_4 | CDS | 72735924 | 72736679 | 72735924 | ID=Msa0183740-mRNA-1:cds;Parent=Msa0183740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
