Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465010 | KEH44316.1 | 96.813 | 251 | 8 | 0 | 1 | 251 | 1 | 251 | 0.0 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465010 | A0A072VRL9 | 96.813 | 251 | 8 | 0 | 1 | 251 | 1 | 251 | 0.0 | 506 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081520 | Msa1465010 | 0.805483 | 1.306151e-49 | -8.615850e-47 |
| Msa0094850 | Msa1465010 | 0.806982 | 6.314765e-50 | -8.615850e-47 |
| Msa0118570 | Msa1465010 | 0.817696 | 2.884201e-52 | -8.615850e-47 |
| Msa1369710 | Msa1465010 | 0.901267 | 3.183681e-78 | -8.615850e-47 |
| Msa1445190 | Msa1465010 | 0.805475 | 1.311113e-49 | -8.615850e-47 |
| Msa1460390 | Msa1465010 | 0.861596 | 9.180155e-64 | -8.615850e-47 |
| Msa0641210 | Msa1465010 | 0.802587 | 5.228124e-49 | -8.615850e-47 |
| Msa0742740 | Msa1465010 | 0.834438 | 2.997366e-56 | -8.615850e-47 |
| Msa0823820 | Msa1465010 | 0.831494 | 1.616810e-55 | -8.615850e-47 |
| Msa0173890 | Msa1465010 | 0.809910 | 1.497987e-50 | -8.615850e-47 |
| Msa0183740 | Msa1465010 | 0.894034 | 3.601778e-75 | -8.615850e-47 |
| Msa0206840 | Msa1465010 | 0.848302 | 6.683420e-60 | -8.615850e-47 |
| Msa1227940 | Msa1465010 | 0.804338 | 2.266067e-49 | -8.615850e-47 |
| Msa1308140 | Msa1465010 | 0.802922 | 4.456945e-49 | -8.615850e-47 |
| Msa0371170 | Msa1465010 | 0.812828 | 3.484196e-51 | -8.615850e-47 |
| Msa0388770 | Msa1465010 | 0.823769 | 1.158965e-53 | -8.615850e-47 |
| Msa0392380 | Msa1465010 | 0.800694 | 1.278188e-48 | -8.615850e-47 |
| Msa1020630 | Msa1465010 | 0.818040 | 2.411556e-52 | -8.615850e-47 |
| Msa0243600 | Msa1465010 | 0.838797 | 2.322640e-57 | -8.615850e-47 |
| Msa0249540 | Msa1465010 | 0.800460 | 1.426217e-48 | -8.615850e-47 |
| Msa0264590 | Msa1465010 | 0.807340 | 5.301534e-50 | -8.615850e-47 |
| Msa0282220 | Msa1465010 | 0.812880 | 3.393129e-51 | -8.615850e-47 |
| Msa0300210 | Msa1465010 | 0.810217 | 1.286556e-50 | -8.615850e-47 |
| Msa0319940 | Msa1465010 | 0.803127 | 4.043859e-49 | -8.615850e-47 |
| Msa0337540 | Msa1465010 | 0.815757 | 7.849458e-52 | -8.615850e-47 |
| Msa0339980 | Msa1465010 | 0.802004 | 6.889989e-49 | -8.615850e-47 |
| Msa1113800 | Msa1465010 | 0.812486 | 4.138119e-51 | -8.615850e-47 |
| Msa1160500 | Msa1465010 | 0.807112 | 5.927073e-50 | -8.615850e-47 |
| Msa1184330 | Msa1465010 | 0.817963 | 2.511111e-52 | -8.615850e-47 |
| Msa0487500 | Msa1465010 | 0.803158 | 3.983924e-49 | -8.615850e-47 |
| Msa0513160 | Msa1465010 | 0.802049 | 6.746562e-49 | -8.615850e-47 |
| Msa0863010 | Msa1465010 | 0.823787 | 1.147404e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465010 | MtrunA17_Chr1g0210731 | 96.813 | 251 | 8 | 0 | 1 | 251 | 55 | 305 | 0.0 | 504 |
| Msa1465010 | MtrunA17_Chr1g0210721 | 67.470 | 249 | 69 | 5 | 1 | 246 | 56 | 295 | 9.69e-112 | 323 |
| Msa1465010 | MtrunA17_Chr2g0287431 | 56.967 | 244 | 98 | 6 | 8 | 249 | 63 | 301 | 8.91e-85 | 255 |
| Msa1465010 | MtrunA17_Chr4g0033971 | 33.673 | 196 | 122 | 3 | 34 | 222 | 84 | 278 | 8.09e-34 | 123 |
| Msa1465010 | MtrunA17_Chr8g0369411 | 33.690 | 187 | 118 | 3 | 26 | 212 | 82 | 262 | 3.34e-26 | 103 |
| Msa1465010 | MtrunA17_Chr5g0409571 | 29.612 | 206 | 133 | 5 | 27 | 232 | 83 | 276 | 1.07e-23 | 96.7 |
| Msa1465010 | MtrunA17_Chr7g0227861 | 32.335 | 167 | 111 | 2 | 71 | 235 | 100 | 266 | 2.66e-20 | 87.8 |
| Msa1465010 | MtrunA17_Chr8g0369401 | 33.333 | 138 | 87 | 3 | 75 | 212 | 32 | 164 | 2.11e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465010 | AT1G55230.1 | 57.143 | 238 | 100 | 2 | 1 | 238 | 56 | 291 | 4.55e-94 | 278 |
| Msa1465010 | AT1G55240.1 | 55.462 | 238 | 105 | 1 | 1 | 238 | 56 | 292 | 6.41e-90 | 268 |
| Msa1465010 | AT5G19870.1 | 54.206 | 214 | 96 | 1 | 10 | 223 | 65 | 276 | 1.24e-85 | 256 |
| Msa1465010 | AT1G49470.1 | 33.168 | 202 | 120 | 3 | 36 | 227 | 83 | 279 | 4.24e-29 | 111 |
| Msa1465010 | AT1G32127.2 | 34.000 | 150 | 95 | 3 | 26 | 175 | 82 | 227 | 5.82e-21 | 89.4 |
| Msa1465010 | AT1G32127.1 | 34.000 | 150 | 95 | 3 | 26 | 175 | 82 | 227 | 5.82e-21 | 89.4 |
| Msa1465010 | AT3G01360.2 | 28.161 | 174 | 122 | 2 | 41 | 211 | 95 | 268 | 1.48e-15 | 75.1 |
| Msa1465010 | AT3G01360.1 | 28.161 | 174 | 122 | 2 | 41 | 211 | 95 | 268 | 1.48e-15 | 75.1 |
Find 51 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGCCTGTGGTGATCTTT+TGG | 0.244017 | tig0044835:+500 | Msa1465010:intergenic |
| AGGTTTGTGGCTTATGTTCA+TGG | 0.293266 | tig0044835:-809 | Msa1465010:CDS |
| CAATTCAGCTGGTTCTTGAT+TGG | 0.309654 | tig0044835:-661 | Msa1465010:CDS |
| CTTACAACCCTTATGGGAAT+TGG | 0.312435 | tig0044835:-886 | Msa1465010:CDS |
| GAAGGAATGGTACCATCATT+AGG | 0.341448 | tig0044835:+1150 | Msa1465010:intergenic |
| TCAAAACTTGCAGTAAATAA+TGG | 0.355405 | tig0044835:+923 | Msa1465010:intergenic |
| AAATGAAATTACTCATTTGC+TGG | 0.362711 | tig0044835:-1022 | Msa1465010:CDS |
| TGTGTCCTTCTACTTGATTA+TGG | 0.364513 | tig0044835:-623 | Msa1465010:CDS |
| TGGTTATCCAATGAGCTTCT+TGG | 0.366591 | tig0044835:-866 | Msa1465010:CDS |
| TTGATTATGGCTGTAAGTTA+TGG | 0.394009 | tig0044835:-610 | Msa1465010:CDS |
| TGGATAACCAATTCCCATAA+GGG | 0.413010 | tig0044835:+879 | Msa1465010:intergenic |
| CAAGTTATTCAGATTTGCTC+TGG | 0.427300 | tig0044835:+478 | Msa1465010:intergenic |
| AGAGATCACATGGGTATAGA+AGG | 0.434296 | tig0044835:-952 | Msa1465010:CDS |
| TTGGATAACCAATTCCCATA+AGG | 0.437321 | tig0044835:+878 | Msa1465010:intergenic |
| GCATAACCTTCCAAGGTTTG+TGG | 0.438782 | tig0044835:-822 | Msa1465010:CDS |
| TACAGCCATAATCAAGTAGA+AGG | 0.441076 | tig0044835:+618 | Msa1465010:intergenic |
| GGTTTGTGGCTTATGTTCAT+GGG | 0.442596 | tig0044835:-808 | Msa1465010:CDS |
| AAACTCACCAAGAAGCTCAT+TGG | 0.454952 | tig0044835:+859 | Msa1465010:intergenic |
| TGGTGAATCTTCAATTCAGC+TGG | 0.455765 | tig0044835:-672 | Msa1465010:CDS |
| CAACTTTGAACACTCTTCCA+TGG | 0.473299 | tig0044835:-1115 | Msa1465010:CDS |
| AAGGAATGGTACCATCATTA+GGG | 0.479670 | tig0044835:+1151 | Msa1465010:intergenic |
| GGTTGCTTTACGAAACTTGA+GGG | 0.479857 | tig0044835:-751 | Msa1465010:CDS |
| GTACCATCATTAGGGTCAAA+TGG | 0.486202 | tig0044835:+1159 | Msa1465010:intergenic |
| CAACCTTTCGGTTCAAAACC+AGG | 0.497142 | tig0044835:+769 | Msa1465010:intergenic |
| GTGGAGATGGTTGGAAGGAA+TGG | 0.517817 | tig0044835:+1137 | Msa1465010:intergenic |
| TGAACATAAGCCACAAACCT+TGG | 0.521512 | tig0044835:+812 | Msa1465010:intergenic |
| AGTTTCGTAAAGCAACCTTT+CGG | 0.522864 | tig0044835:+757 | Msa1465010:intergenic |
| TCTGTTAGCATAACCTTCCA+AGG | 0.527914 | tig0044835:-829 | Msa1465010:CDS |
| AGTGTTCAAAGTTGTGGAGA+TGG | 0.532689 | tig0044835:+1124 | Msa1465010:intergenic |
| GAGGAACATTATCGTGAAGA+TGG | 0.535159 | tig0044835:-553 | Msa1465010:CDS |
| TGGAAGAGTGTTCAAAGTTG+TGG | 0.544369 | tig0044835:+1118 | Msa1465010:intergenic |
| TTCAAAGTTGTGGAGATGGT+TGG | 0.544658 | tig0044835:+1128 | Msa1465010:intergenic |
| CAACCATTTGACCCTAATGA+TGG | 0.545080 | tig0044835:-1162 | Msa1465010:CDS |
| TGTTAAGTGCAGTGATGAAA+AGG | 0.547706 | tig0044835:-716 | Msa1465010:CDS |
| CATAAGCCACAAACCTTGGA+AGG | 0.549282 | tig0044835:+816 | Msa1465010:intergenic |
| TCTTCATCGTGCTGTAGCGT+TGG | 0.552622 | tig0044835:-692 | Msa1465010:CDS |
| TAGGGTCAAATGGTTGGTGA+TGG | 0.562396 | tig0044835:+1169 | Msa1465010:intergenic |
| GTTTGTGGCTTATGTTCATG+GGG | 0.570855 | tig0044835:-807 | Msa1465010:CDS |
| TCTTCATTCAAGAGATCACA+TGG | 0.573103 | tig0044835:-962 | Msa1465010:CDS |
| CATCATTAGGGTCAAATGGT+TGG | 0.575638 | tig0044835:+1163 | Msa1465010:intergenic |
| GATTTGCTCTGGCTTGCCTG+TGG | 0.582887 | tig0044835:+489 | Msa1465010:intergenic |
| GTATGTTTCACTGATGATGA+AGG | 0.586326 | tig0044835:-575 | Msa1465010:CDS |
| AAGTTGTGGAGATGGTTGGA+AGG | 0.588161 | tig0044835:+1132 | Msa1465010:intergenic |
| CAATGCCAAAAGATCACCAC+AGG | 0.593405 | tig0044835:-505 | Msa1465010:CDS |
| GACTAAGAAAGACAAAGCCA+TGG | 0.596145 | tig0044835:+1098 | Msa1465010:intergenic |
| AAATTGTTGTGCAAATGCTA+TGG | 0.610782 | tig0044835:+996 | Msa1465010:intergenic |
| TCAAATGGTTGGTGATGGAG+AGG | 0.619042 | tig0044835:+1174 | Msa1465010:intergenic |
| AGGTTGCTTTACGAAACTTG+AGG | 0.630393 | tig0044835:-752 | Msa1465010:CDS |
| AGGAGCTATGAAGAGTTCCA+TGG | 0.640804 | tig0044835:+1194 | Msa1465010:intergenic |
| TGTTTCACTGATGATGAAGG+AGG | 0.670252 | tig0044835:-572 | Msa1465010:CDS |
| CTTCATTCAAGAGATCACAT+GGG | 0.751652 | tig0044835:-961 | Msa1465010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTCTATCAAGAATTA+TGG | + | tig0044835:646-665 | Msa1465010:intergenic | 20.0% |
| !!! | TGATTTTCTATCAAGAATTA+TGG | + | tig0044835:646-665 | Msa1465010:intergenic | 20.0% |
| ! | AAATGAAATTACTCATTTGC+TGG | - | tig0044835:683-702 | Msa1465010:CDS | 25.0% |
| ! | TCAAAACTTGCAGTAAATAA+TGG | + | tig0044835:785-804 | Msa1465010:intergenic | 25.0% |
| ! | AAATGAAATTACTCATTTGC+TGG | - | tig0044835:683-702 | Msa1465010:CDS | 25.0% |
| ! | TCAAAACTTGCAGTAAATAA+TGG | + | tig0044835:785-804 | Msa1465010:intergenic | 25.0% |
| ! | TTGCATTATTTTCATAGCCA+TGG | - | tig0044835:494-513 | Msa1465010:CDS | 30.0% |
| AAATTGTTGTGCAAATGCTA+TGG | + | tig0044835:712-731 | Msa1465010:intergenic | 30.0% | |
| ! | TTGTTTTCTTACAACCCTTA+TGG | - | tig0044835:812-831 | Msa1465010:CDS | 30.0% |
| ! | TGTTTTCTTACAACCCTTAT+GGG | - | tig0044835:813-832 | Msa1465010:CDS | 30.0% |
| TTGATTATGGCTGTAAGTTA+TGG | - | tig0044835:1095-1114 | Msa1465010:CDS | 30.0% | |
| ! | TTGCATTATTTTCATAGCCA+TGG | - | tig0044835:494-513 | Msa1465010:CDS | 30.0% |
| AAATTGTTGTGCAAATGCTA+TGG | + | tig0044835:712-731 | Msa1465010:intergenic | 30.0% | |
| ! | TTGTTTTCTTACAACCCTTA+TGG | - | tig0044835:812-831 | Msa1465010:CDS | 30.0% |
| ! | TGTTTTCTTACAACCCTTAT+GGG | - | tig0044835:813-832 | Msa1465010:CDS | 30.0% |
| TTGATTATGGCTGTAAGTTA+TGG | - | tig0044835:1095-1114 | Msa1465010:CDS | 30.0% | |
| AAGGAATGGTACCATCATTA+GGG | + | tig0044835:557-576 | Msa1465010:intergenic | 35.0% | |
| TCTTCATTCAAGAGATCACA+TGG | - | tig0044835:743-762 | Msa1465010:CDS | 35.0% | |
| CTTCATTCAAGAGATCACAT+GGG | - | tig0044835:744-763 | Msa1465010:CDS | 35.0% | |
| TGGATAACCAATTCCCATAA+GGG | + | tig0044835:829-848 | Msa1465010:intergenic | 35.0% | |
| TTGGATAACCAATTCCCATA+AGG | + | tig0044835:830-849 | Msa1465010:intergenic | 35.0% | |
| AGTTTCGTAAAGCAACCTTT+CGG | + | tig0044835:951-970 | Msa1465010:intergenic | 35.0% | |
| TGTTAAGTGCAGTGATGAAA+AGG | - | tig0044835:989-1008 | Msa1465010:CDS | 35.0% | |
| TGTGTCCTTCTACTTGATTA+TGG | - | tig0044835:1082-1101 | Msa1465010:CDS | 35.0% | |
| TACAGCCATAATCAAGTAGA+AGG | + | tig0044835:1090-1109 | Msa1465010:intergenic | 35.0% | |
| ! | GTATGTTTCACTGATGATGA+AGG | - | tig0044835:1130-1149 | Msa1465010:CDS | 35.0% |
| AAGGAATGGTACCATCATTA+GGG | + | tig0044835:557-576 | Msa1465010:intergenic | 35.0% | |
| TCTTCATTCAAGAGATCACA+TGG | - | tig0044835:743-762 | Msa1465010:CDS | 35.0% | |
| CTTCATTCAAGAGATCACAT+GGG | - | tig0044835:744-763 | Msa1465010:CDS | 35.0% | |
| TGGATAACCAATTCCCATAA+GGG | + | tig0044835:829-848 | Msa1465010:intergenic | 35.0% | |
| TTGGATAACCAATTCCCATA+AGG | + | tig0044835:830-849 | Msa1465010:intergenic | 35.0% | |
| AGTTTCGTAAAGCAACCTTT+CGG | + | tig0044835:951-970 | Msa1465010:intergenic | 35.0% | |
| TGTTAAGTGCAGTGATGAAA+AGG | - | tig0044835:989-1008 | Msa1465010:CDS | 35.0% | |
| TGTGTCCTTCTACTTGATTA+TGG | - | tig0044835:1082-1101 | Msa1465010:CDS | 35.0% | |
| TACAGCCATAATCAAGTAGA+AGG | + | tig0044835:1090-1109 | Msa1465010:intergenic | 35.0% | |
| ! | GTATGTTTCACTGATGATGA+AGG | - | tig0044835:1130-1149 | Msa1465010:CDS | 35.0% |
| CATCATTAGGGTCAAATGGT+TGG | + | tig0044835:545-564 | Msa1465010:intergenic | 40.0% | |
| CAACCATTTGACCCTAATGA+TGG | - | tig0044835:543-562 | Msa1465010:CDS | 40.0% | |
| GTACCATCATTAGGGTCAAA+TGG | + | tig0044835:549-568 | Msa1465010:intergenic | 40.0% | |
| GAAGGAATGGTACCATCATT+AGG | + | tig0044835:558-577 | Msa1465010:intergenic | 40.0% | |
| TTCAAAGTTGTGGAGATGGT+TGG | + | tig0044835:580-599 | Msa1465010:intergenic | 40.0% | |
| AGTGTTCAAAGTTGTGGAGA+TGG | + | tig0044835:584-603 | Msa1465010:intergenic | 40.0% | |
| !! | TGGAAGAGTGTTCAAAGTTG+TGG | + | tig0044835:590-609 | Msa1465010:intergenic | 40.0% |
| CAACTTTGAACACTCTTCCA+TGG | - | tig0044835:590-609 | Msa1465010:CDS | 40.0% | |
| GACTAAGAAAGACAAAGCCA+TGG | + | tig0044835:610-629 | Msa1465010:intergenic | 40.0% | |
| AGAGATCACATGGGTATAGA+AGG | - | tig0044835:753-772 | Msa1465010:CDS | 40.0% | |
| CTTACAACCCTTATGGGAAT+TGG | - | tig0044835:819-838 | Msa1465010:CDS | 40.0% | |
| TGGTTATCCAATGAGCTTCT+TGG | - | tig0044835:839-858 | Msa1465010:CDS | 40.0% | |
| AAACTCACCAAGAAGCTCAT+TGG | + | tig0044835:849-868 | Msa1465010:intergenic | 40.0% | |
| TCTGTTAGCATAACCTTCCA+AGG | - | tig0044835:876-895 | Msa1465010:CDS | 40.0% | |
| TGAACATAAGCCACAAACCT+TGG | + | tig0044835:896-915 | Msa1465010:intergenic | 40.0% | |
| AGGTTTGTGGCTTATGTTCA+TGG | - | tig0044835:896-915 | Msa1465010:CDS | 40.0% | |
| GGTTTGTGGCTTATGTTCAT+GGG | - | tig0044835:897-916 | Msa1465010:CDS | 40.0% | |
| GTTTGTGGCTTATGTTCATG+GGG | - | tig0044835:898-917 | Msa1465010:CDS | 40.0% | |
| ! | AGGTTGCTTTACGAAACTTG+AGG | - | tig0044835:953-972 | Msa1465010:CDS | 40.0% |
| ! | GGTTGCTTTACGAAACTTGA+GGG | - | tig0044835:954-973 | Msa1465010:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | - | tig0044835:1033-1052 | Msa1465010:CDS | 40.0% | |
| ! | CAATTCAGCTGGTTCTTGAT+TGG | - | tig0044835:1044-1063 | Msa1465010:CDS | 40.0% |
| ! | TGTTTCACTGATGATGAAGG+AGG | - | tig0044835:1133-1152 | Msa1465010:CDS | 40.0% |
| GAGGAACATTATCGTGAAGA+TGG | - | tig0044835:1152-1171 | Msa1465010:CDS | 40.0% | |
| ! | TGTGGTGATCTTTTGGCATT+GGG | + | tig0044835:1201-1220 | Msa1465010:intergenic | 40.0% |
| CATCATTAGGGTCAAATGGT+TGG | + | tig0044835:545-564 | Msa1465010:intergenic | 40.0% | |
| CAACCATTTGACCCTAATGA+TGG | - | tig0044835:543-562 | Msa1465010:CDS | 40.0% | |
| GTACCATCATTAGGGTCAAA+TGG | + | tig0044835:549-568 | Msa1465010:intergenic | 40.0% | |
| GAAGGAATGGTACCATCATT+AGG | + | tig0044835:558-577 | Msa1465010:intergenic | 40.0% | |
| TTCAAAGTTGTGGAGATGGT+TGG | + | tig0044835:580-599 | Msa1465010:intergenic | 40.0% | |
| AGTGTTCAAAGTTGTGGAGA+TGG | + | tig0044835:584-603 | Msa1465010:intergenic | 40.0% | |
| !! | TGGAAGAGTGTTCAAAGTTG+TGG | + | tig0044835:590-609 | Msa1465010:intergenic | 40.0% |
| CAACTTTGAACACTCTTCCA+TGG | - | tig0044835:590-609 | Msa1465010:CDS | 40.0% | |
| GACTAAGAAAGACAAAGCCA+TGG | + | tig0044835:610-629 | Msa1465010:intergenic | 40.0% | |
| AGAGATCACATGGGTATAGA+AGG | - | tig0044835:753-772 | Msa1465010:CDS | 40.0% | |
| CTTACAACCCTTATGGGAAT+TGG | - | tig0044835:819-838 | Msa1465010:CDS | 40.0% | |
| TGGTTATCCAATGAGCTTCT+TGG | - | tig0044835:839-858 | Msa1465010:CDS | 40.0% | |
| AAACTCACCAAGAAGCTCAT+TGG | + | tig0044835:849-868 | Msa1465010:intergenic | 40.0% | |
| TCTGTTAGCATAACCTTCCA+AGG | - | tig0044835:876-895 | Msa1465010:CDS | 40.0% | |
| TGAACATAAGCCACAAACCT+TGG | + | tig0044835:896-915 | Msa1465010:intergenic | 40.0% | |
| AGGTTTGTGGCTTATGTTCA+TGG | - | tig0044835:896-915 | Msa1465010:CDS | 40.0% | |
| GGTTTGTGGCTTATGTTCAT+GGG | - | tig0044835:897-916 | Msa1465010:CDS | 40.0% | |
| GTTTGTGGCTTATGTTCATG+GGG | - | tig0044835:898-917 | Msa1465010:CDS | 40.0% | |
| ! | AGGTTGCTTTACGAAACTTG+AGG | - | tig0044835:953-972 | Msa1465010:CDS | 40.0% |
| ! | GGTTGCTTTACGAAACTTGA+GGG | - | tig0044835:954-973 | Msa1465010:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | - | tig0044835:1033-1052 | Msa1465010:CDS | 40.0% | |
| ! | CAATTCAGCTGGTTCTTGAT+TGG | - | tig0044835:1044-1063 | Msa1465010:CDS | 40.0% |
| ! | TGTTTCACTGATGATGAAGG+AGG | - | tig0044835:1133-1152 | Msa1465010:CDS | 40.0% |
| GAGGAACATTATCGTGAAGA+TGG | - | tig0044835:1152-1171 | Msa1465010:CDS | 40.0% | |
| ! | TGTGGTGATCTTTTGGCATT+GGG | + | tig0044835:1201-1220 | Msa1465010:intergenic | 40.0% |
| AGGAGCTATGAAGAGTTCCA+TGG | + | tig0044835:514-533 | Msa1465010:intergenic | 45.0% | |
| !! | TCAAATGGTTGGTGATGGAG+AGG | + | tig0044835:534-553 | Msa1465010:intergenic | 45.0% |
| !! | TAGGGTCAAATGGTTGGTGA+TGG | + | tig0044835:539-558 | Msa1465010:intergenic | 45.0% |
| AAGTTGTGGAGATGGTTGGA+AGG | + | tig0044835:576-595 | Msa1465010:intergenic | 45.0% | |
| GCATAACCTTCCAAGGTTTG+TGG | - | tig0044835:883-902 | Msa1465010:CDS | 45.0% | |
| CATAAGCCACAAACCTTGGA+AGG | + | tig0044835:892-911 | Msa1465010:intergenic | 45.0% | |
| !!! | ACACCTGGTTTTGAACCGAA+AGG | - | tig0044835:933-952 | Msa1465010:CDS | 45.0% |
| CAACCTTTCGGTTCAAAACC+AGG | + | tig0044835:939-958 | Msa1465010:intergenic | 45.0% | |
| ! | CTGTGGTGATCTTTTGGCAT+TGG | + | tig0044835:1202-1221 | Msa1465010:intergenic | 45.0% |
| CAATGCCAAAAGATCACCAC+AGG | - | tig0044835:1200-1219 | Msa1465010:CDS | 45.0% | |
| AGGAGCTATGAAGAGTTCCA+TGG | + | tig0044835:514-533 | Msa1465010:intergenic | 45.0% | |
| !! | TCAAATGGTTGGTGATGGAG+AGG | + | tig0044835:534-553 | Msa1465010:intergenic | 45.0% |
| !! | TAGGGTCAAATGGTTGGTGA+TGG | + | tig0044835:539-558 | Msa1465010:intergenic | 45.0% |
| AAGTTGTGGAGATGGTTGGA+AGG | + | tig0044835:576-595 | Msa1465010:intergenic | 45.0% | |
| GCATAACCTTCCAAGGTTTG+TGG | - | tig0044835:883-902 | Msa1465010:CDS | 45.0% | |
| CATAAGCCACAAACCTTGGA+AGG | + | tig0044835:892-911 | Msa1465010:intergenic | 45.0% | |
| !!! | ACACCTGGTTTTGAACCGAA+AGG | - | tig0044835:933-952 | Msa1465010:CDS | 45.0% |
| CAACCTTTCGGTTCAAAACC+AGG | + | tig0044835:939-958 | Msa1465010:intergenic | 45.0% | |
| ! | CTGTGGTGATCTTTTGGCAT+TGG | + | tig0044835:1202-1221 | Msa1465010:intergenic | 45.0% |
| CAATGCCAAAAGATCACCAC+AGG | - | tig0044835:1200-1219 | Msa1465010:CDS | 45.0% | |
| GTGGAGATGGTTGGAAGGAA+TGG | + | tig0044835:571-590 | Msa1465010:intergenic | 50.0% | |
| !! | GGGCTCATGCTTTTTACACC+TGG | - | tig0044835:918-937 | Msa1465010:CDS | 50.0% |
| TCTTCATCGTGCTGTAGCGT+TGG | - | tig0044835:1013-1032 | Msa1465010:CDS | 50.0% | |
| ! | GCTTGCCTGTGGTGATCTTT+TGG | + | tig0044835:1208-1227 | Msa1465010:intergenic | 50.0% |
| GTGGAGATGGTTGGAAGGAA+TGG | + | tig0044835:571-590 | Msa1465010:intergenic | 50.0% | |
| !! | GGGCTCATGCTTTTTACACC+TGG | - | tig0044835:918-937 | Msa1465010:CDS | 50.0% |
| TCTTCATCGTGCTGTAGCGT+TGG | - | tig0044835:1013-1032 | Msa1465010:CDS | 50.0% | |
| ! | GCTTGCCTGTGGTGATCTTT+TGG | + | tig0044835:1208-1227 | Msa1465010:intergenic | 50.0% |
| ! | GATTTGCTCTGGCTTGCCTG+TGG | + | tig0044835:1219-1238 | Msa1465010:intergenic | 55.0% |
| ! | GATTTGCTCTGGCTTGCCTG+TGG | + | tig0044835:1219-1238 | Msa1465010:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0044835 | gene | 486 | 1241 | 486 | ID=Msa1465010;Name=Msa1465010 |
| tig0044835 | mRNA | 486 | 1241 | 486 | ID=Msa1465010-mRNA-1;Parent=Msa1465010;Name=Msa1465010-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|251 |
| tig0044835 | exon | 486 | 1241 | 486 | ID=Msa1465010-mRNA-1:exon:24655;Parent=Msa1465010-mRNA-1 |
| tig0044835 | CDS | 486 | 1241 | 486 | ID=Msa1465010-mRNA-1:cds;Parent=Msa1465010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
