Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184090 | sp|Q8VYF7|WHY2_ARATH | 57.983 | 238 | 84 | 4 | 1 | 222 | 1 | 238 | 7.23e-90 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184090 | G7L2W4 | 97.297 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 4.22e-159 | 448 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0184090 | TF | Whirly |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0184090 | Msa1129900 | 0.975179 | 1.764049e-139 | -8.615850e-47 |
| Msa0184090 | Msa1430210 | 0.998463 | 7.963587e-266 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184090 | MtrunA17_Chr7g0274781 | 97.297 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 8.12e-163 | 448 |
| Msa0184090 | MtrunA17_Chr5g0416091 | 39.894 | 188 | 109 | 2 | 37 | 222 | 76 | 261 | 2.73e-47 | 156 |
| Msa0184090 | MtrunA17_Chr8g0362331 | 40.244 | 164 | 96 | 1 | 37 | 198 | 75 | 238 | 4.12e-47 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184090 | AT1G71260.1 | 57.983 | 238 | 84 | 4 | 1 | 222 | 1 | 238 | 7.35e-91 | 267 |
| Msa0184090 | AT2G02740.1 | 42.408 | 191 | 100 | 4 | 39 | 222 | 81 | 268 | 1.11e-51 | 168 |
| Msa0184090 | AT1G14410.1 | 40.838 | 191 | 96 | 3 | 42 | 222 | 80 | 263 | 1.72e-51 | 167 |
Find 71 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGCGTTGCCACACATTA+TGG | 0.228816 | 1_4:-73265368 | Msa0184090:CDS |
| TGGATTGATAATACACAAAA+TGG | 0.253128 | 1_4:+73265203 | None:intergenic |
| CCACATACCATCCTAGTCTT+TGG | 0.268936 | 1_4:+73265183 | None:intergenic |
| GCTTGCTTCCTTCATCTTCC+AGG | 0.275752 | 1_4:-73268235 | Msa0184090:intron |
| TTGCCCTTGTAAACAGAATA+AGG | 0.288907 | 1_4:+73267946 | None:intergenic |
| AAAATTTGTGAGTTCATCTT+TGG | 0.301520 | 1_4:+73265295 | None:intergenic |
| TTGAGATTTGAGATATTCAT+AGG | 0.312010 | 1_4:-73264993 | Msa0184090:three_prime_UTR |
| AGGAACACTAAAATTCTCTT+TGG | 0.325050 | 1_4:+73266293 | None:intergenic |
| ATGAGTTTCATGCCTGCTAT+TGG | 0.341936 | 1_4:-73267570 | Msa0184090:CDS |
| GAAAGAATTCACATGAATCT+TGG | 0.354145 | 1_4:+73266717 | None:intergenic |
| AAAGAATTCACATGAATCTT+GGG | 0.363397 | 1_4:+73266718 | None:intergenic |
| AAATATTATAGAATTTCATT+TGG | 0.366650 | 1_4:+73264958 | None:intergenic |
| TGAGTTTCATGCCTGCTATT+GGG | 0.372914 | 1_4:-73267569 | Msa0184090:CDS |
| GCAAACTCAGCAGTTGTAAC+AGG | 0.373789 | 1_4:+73266273 | None:intergenic |
| AGGCATGAAACTCATCATTA+TGG | 0.404570 | 1_4:+73267578 | None:intergenic |
| GTGAAACAGGAATCATCTAT+TGG | 0.407409 | 1_4:-73268134 | Msa0184090:intron |
| TTTGCGTTGCCACACATTAT+GGG | 0.408601 | 1_4:-73265367 | Msa0184090:CDS |
| AGCAGAATAGTTGTTATTTG+TGG | 0.411050 | 1_4:+73268081 | None:intergenic |
| TACTGTTGGAAAATATGAAA+TGG | 0.421099 | 1_4:-73265248 | Msa0184090:three_prime_UTR |
| TGCTCCTTATTCTGTTTACA+AGG | 0.424645 | 1_4:-73267950 | Msa0184090:CDS |
| GTTGCCACACATTATGGGTT+GGG | 0.425766 | 1_4:-73265362 | Msa0184090:CDS |
| AACCGACTTCAGTAGCTGAT+AGG | 0.440719 | 1_4:+73266759 | None:intergenic |
| CGTTGCCACACATTATGGGT+TGG | 0.443320 | 1_4:-73265363 | Msa0184090:CDS |
| ATATACCTTGATTTCATTGA+GGG | 0.447907 | 1_4:+73266689 | None:intergenic |
| GTAAATTGTAATATTTAAGA+AGG | 0.449316 | 1_4:-73265150 | Msa0184090:three_prime_UTR |
| GTCGGTTCTTTGATAGCCAT+TGG | 0.458218 | 1_4:-73266743 | Msa0184090:CDS |
| TTCTTATGCTGCAGTAATGC+TGG | 0.463315 | 1_4:-73266507 | Msa0184090:intron |
| TTGGGGAGCGCAAATATGAC+TGG | 0.493872 | 1_4:-73267551 | Msa0184090:CDS |
| GCAGTAATGCTGGTCAAGTA+AGG | 0.498490 | 1_4:-73266497 | Msa0184090:intron |
| AATAACAACTATTCTGCTAA+AGG | 0.500782 | 1_4:-73268076 | Msa0184090:intron |
| TGAGATTTGAGATATTCATA+GGG | 0.512047 | 1_4:-73264992 | Msa0184090:three_prime_UTR |
| GAGTTTCATGCCTGCTATTG+GGG | 0.513089 | 1_4:-73267568 | Msa0184090:CDS |
| ATTGGAAGTTCTTTCCGCTA+GGG | 0.516317 | 1_4:-73268116 | Msa0184090:CDS |
| ATGACCCCTCAATGAAATCA+AGG | 0.516531 | 1_4:-73266694 | Msa0184090:intron |
| TTGAAAGCTGACTGTCCCAC+TGG | 0.516551 | 1_4:+73265318 | None:intergenic |
| AATAGACAGTGTCACACATA+CGG | 0.516634 | 1_4:+73265014 | None:intergenic |
| ATTTGAGATATTCATAGGGG+TGG | 0.523214 | 1_4:-73264988 | Msa0184090:three_prime_UTR |
| TGGAATTGACAGCACAAAGA+AGG | 0.524145 | 1_4:+73265223 | None:intergenic |
| AATATACCTTGATTTCATTG+AGG | 0.524866 | 1_4:+73266688 | None:intergenic |
| TGCAACAAGAGGCACTTAGT+TGG | 0.525081 | 1_4:+73264925 | None:intergenic |
| GCCCTATCAGCTACTGAAGT+CGG | 0.527679 | 1_4:-73266761 | Msa0184090:CDS |
| ACCGACTTCAGTAGCTGATA+GGG | 0.538316 | 1_4:+73266760 | None:intergenic |
| AGGGAGTACCTGGAAGATGA+AGG | 0.540073 | 1_4:+73268227 | None:intergenic |
| TATTTGCGCTCCCCAATAGC+AGG | 0.541622 | 1_4:+73267558 | None:intergenic |
| TATTGGAAGTTCTTTCCGCT+AGG | 0.545874 | 1_4:-73268117 | Msa0184090:CDS |
| TTACTTTAGTATGCAACAAG+AGG | 0.546089 | 1_4:+73264914 | None:intergenic |
| ACAAAGTAGCCATTGCTATG+AGG | 0.558527 | 1_4:+73266456 | None:intergenic |
| ACATGAATCTTGGGGACCAA+TGG | 0.561311 | 1_4:+73266727 | None:intergenic |
| CCAAAGACTAGGATGGTATG+TGG | 0.561736 | 1_4:-73265183 | Msa0184090:three_prime_UTR |
| TGGGAAAAGTGAGTTACTGT+TGG | 0.566690 | 1_4:-73265262 | Msa0184090:exon |
| TCAATTAAGCCTCATAGCAA+TGG | 0.569726 | 1_4:-73266465 | Msa0184090:CDS |
| TTTAAGAAGGAAGCATGAGA+AGG | 0.571675 | 1_4:-73265137 | Msa0184090:three_prime_UTR |
| ACAAGAGGCACTTAGTTGGA+TGG | 0.574290 | 1_4:+73264929 | None:intergenic |
| ACATCCAACTTAGTAAAAGT+AGG | 0.596084 | 1_4:+73267895 | None:intergenic |
| GAGATTTGAGATATTCATAG+GGG | 0.608018 | 1_4:-73264991 | Msa0184090:three_prime_UTR |
| GCTCCTTATTCTGTTTACAA+GGG | 0.608711 | 1_4:-73267949 | Msa0184090:CDS |
| ATTCTCTTTGGTATTTAACA+CGG | 0.610530 | 1_4:+73266305 | None:intergenic |
| TATACCTTGATTTCATTGAG+GGG | 0.613978 | 1_4:+73266690 | None:intergenic |
| ATAGACAGTGTCACACATAC+GGG | 0.614266 | 1_4:+73265015 | None:intergenic |
| TAACTAATCAGCAGTCCAGT+GGG | 0.621978 | 1_4:-73265333 | Msa0184090:CDS |
| TATCAATCCAAAGACTAGGA+TGG | 0.631463 | 1_4:-73265190 | Msa0184090:three_prime_UTR |
| GTATTATCAATCCAAAGACT+AGG | 0.633141 | 1_4:-73265194 | Msa0184090:three_prime_UTR |
| AAGAATTCACATGAATCTTG+GGG | 0.637953 | 1_4:+73266719 | None:intergenic |
| AAAGAGGCATACACTGCAAG+CGG | 0.640513 | 1_4:+73266239 | None:intergenic |
| TGGGGAGCGCAAATATGACT+GGG | 0.642764 | 1_4:-73267550 | Msa0184090:CDS |
| CTAACTAATCAGCAGTCCAG+TGG | 0.653328 | 1_4:-73265334 | Msa0184090:CDS |
| TTAGTAAAAGTAGGAAGACA+AGG | 0.653333 | 1_4:+73267904 | None:intergenic |
| CGATCCCAACCCATAATGTG+TGG | 0.655749 | 1_4:+73265358 | None:intergenic |
| GTGTTCAATTCAAAATGTCG+AGG | 0.671963 | 1_4:+73268341 | None:intergenic |
| GCTCTTGTTGTTGATCGTCG+CGG | 0.693088 | 1_4:-73267603 | Msa0184090:CDS |
| GGCAGTAGAGAAATCCCTAG+CGG | 0.738730 | 1_4:+73268102 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATAGAATTTCATT+TGG | + | chr1_4:73268313-73268332 | None:intergenic | 10.0% |
| !! | TATTAATGAATGAAAAATTG+GGG | + | chr1_4:73264960-73264979 | None:intergenic | 15.0% |
| !! | CTATTAATGAATGAAAAATT+GGG | + | chr1_4:73264961-73264980 | None:intergenic | 15.0% |
| !! | AAAACATTGTTTAAATACTA+TGG | - | chr1_4:73265944-73265963 | Msa0184090:intron | 15.0% |
| !! | AATGATAATAAAAGAAAGTT+TGG | + | chr1_4:73267314-73267333 | None:intergenic | 15.0% |
| !! | GTAAATTGTAATATTTAAGA+AGG | - | chr1_4:73268118-73268137 | Msa0184090:CDS | 15.0% |
| !! | GCTATTAATGAATGAAAAAT+TGG | + | chr1_4:73264962-73264981 | None:intergenic | 20.0% |
| !! | TGTTATTATTATTGTGAAAC+AGG | - | chr1_4:73265121-73265140 | Msa0184090:three_prime_UTR | 20.0% |
| !!! | ATTTTTATGCTTACATTGAT+TGG | - | chr1_4:73265248-73265267 | Msa0184090:three_prime_UTR | 20.0% |
| !! | AGGAATGTATTTAAATGATT+AGG | + | chr1_4:73265411-73265430 | None:intergenic | 20.0% |
| !! | AAGAAAGAAGAAAGAATAAA+AGG | + | chr1_4:73265768-73265787 | None:intergenic | 20.0% |
| !! | TCTCTATTACAAAATAAGAA+AGG | + | chr1_4:73266344-73266363 | None:intergenic | 20.0% |
| !! | TCAACAAACAAAAAAACTAA+TGG | + | chr1_4:73266701-73266720 | None:intergenic | 20.0% |
| !!! | TTTTAATACATTGGGTATTT+GGG | - | chr1_4:73266872-73266891 | Msa0184090:intron | 20.0% |
| !! | TAAAAATGTTGAATCAAGTT+TGG | + | chr1_4:73267462-73267481 | None:intergenic | 20.0% |
| ! | ATAACAGAGAAATTGAAAGA+AGG | + | chr1_4:73265081-73265100 | None:intergenic | 25.0% |
| ! | AATAACAACTATTCTGCTAA+AGG | - | chr1_4:73265192-73265211 | Msa0184090:three_prime_UTR | 25.0% |
| ! | ATATTATATGCTTCACTTTC+AGG | - | chr1_4:73265274-73265293 | Msa0184090:CDS | 25.0% |
| ! | GAATAAGCTATTTGTATAAG+CGG | + | chr1_4:73265556-73265575 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+TGG | - | chr1_4:73265591-73265610 | Msa0184090:intron | 25.0% |
| ! | ATTACAAGTTTACAAAGTAG+TGG | - | chr1_4:73265972-73265991 | Msa0184090:intron | 25.0% |
| !!! | TTAAGAGCATTTTATTGTCT+CGG | - | chr1_4:73266247-73266266 | Msa0184090:intron | 25.0% |
| ! | TAAAAGTTGAAAACATGAAG+CGG | + | chr1_4:73266317-73266336 | None:intergenic | 25.0% |
| ! | AGAATAACATATTGTCAACT+TGG | - | chr1_4:73266361-73266380 | Msa0184090:intron | 25.0% |
| ! | AAAGAATTCACATGAATCTT+GGG | + | chr1_4:73266553-73266572 | None:intergenic | 25.0% |
| ! | ATATACCTTGATTTCATTGA+GGG | + | chr1_4:73266582-73266601 | None:intergenic | 25.0% |
| ! | AATATACCTTGATTTCATTG+AGG | + | chr1_4:73266583-73266602 | None:intergenic | 25.0% |
| ! | TCTCTCATGAGATAATTAAT+TGG | + | chr1_4:73266636-73266655 | None:intergenic | 25.0% |
| ! | GTCACTAATTAACTTTCAAA+TGG | + | chr1_4:73266731-73266750 | None:intergenic | 25.0% |
| !! | TTGTTCACCTTTTAATACAT+TGG | - | chr1_4:73266863-73266882 | Msa0184090:intron | 25.0% |
| !! | TGTTCACCTTTTAATACATT+GGG | - | chr1_4:73266864-73266883 | Msa0184090:intron | 25.0% |
| ! | CAAATACCCAATGTATTAAA+AGG | + | chr1_4:73266873-73266892 | None:intergenic | 25.0% |
| !! | CTTTTAATACATTGGGTATT+TGG | - | chr1_4:73266871-73266890 | Msa0184090:intron | 25.0% |
| ! | ATTCTCTTTGGTATTTAACA+CGG | + | chr1_4:73266966-73266985 | None:intergenic | 25.0% |
| ! | TGTCTTAAATAACAATGAAG+TGG | - | chr1_4:73267134-73267153 | Msa0184090:intron | 25.0% |
| !! | TTACACTTTTATTGTCATTC+CGG | - | chr1_4:73267514-73267533 | Msa0184090:intron | 25.0% |
| !!! | TTTTGTTTTCAGGTAATGAT+TGG | - | chr1_4:73267576-73267595 | Msa0184090:CDS | 25.0% |
| ! | TTCAAAAATTGCAGTTAACT+AGG | + | chr1_4:73267717-73267736 | None:intergenic | 25.0% |
| !! | TTAAAAGCACAAGTATGATT+GGG | + | chr1_4:73267835-73267854 | None:intergenic | 25.0% |
| !! | ATTAAAAGCACAAGTATGAT+TGG | + | chr1_4:73267836-73267855 | None:intergenic | 25.0% |
| ! | AAAATTTGTGAGTTCATCTT+TGG | + | chr1_4:73267976-73267995 | None:intergenic | 25.0% |
| ! | TACTGTTGGAAAATATGAAA+TGG | - | chr1_4:73268020-73268039 | Msa0184090:intron | 25.0% |
| !! | TGGATTGATAATACACAAAA+TGG | + | chr1_4:73268068-73268087 | None:intergenic | 25.0% |
| ! | AAGCAGAAAAAGAATAAACA+AGG | + | chr1_4:73268203-73268222 | None:intergenic | 25.0% |
| !! | TTGAGATTTGAGATATTCAT+AGG | - | chr1_4:73268275-73268294 | Msa0184090:five_prime_UTR | 25.0% |
| !! | TGAGATTTGAGATATTCATA+GGG | - | chr1_4:73268276-73268295 | Msa0184090:five_prime_UTR | 25.0% |
| !! | AGCAGAATAGTTGTTATTTG+TGG | + | chr1_4:73265190-73265209 | None:intergenic | 30.0% |
| TTAGTAAAAGTAGGAAGACA+AGG | + | chr1_4:73265367-73265386 | None:intergenic | 30.0% | |
| !! | TCTTCCTACTTTTACTAAGT+TGG | - | chr1_4:73265369-73265388 | Msa0184090:CDS | 30.0% |
| ACATCCAACTTAGTAAAAGT+AGG | + | chr1_4:73265376-73265395 | None:intergenic | 30.0% | |
| ! | AAATACATTCCTTTTTACGC+TGG | - | chr1_4:73265419-73265438 | Msa0184090:intron | 30.0% |
| ! | ATTTCCATTTGTTACAGTCT+GGG | - | chr1_4:73265642-73265661 | Msa0184090:intron | 30.0% |
| AATTGTGTTTACGTCTATTG+TGG | - | chr1_4:73265876-73265895 | Msa0184090:intron | 30.0% | |
| TTAAATACTACAGTTGTAGC+AGG | - | chr1_4:73266061-73266080 | Msa0184090:intron | 30.0% | |
| AAGAGTTTAAAGAGACATGA+GGG | + | chr1_4:73266229-73266248 | None:intergenic | 30.0% | |
| TAAGAGTTTAAAGAGACATG+AGG | + | chr1_4:73266230-73266249 | None:intergenic | 30.0% | |
| !!! | TAAGAGCATTTTATTGTCTC+GGG | - | chr1_4:73266248-73266267 | Msa0184090:intron | 30.0% |
| AACTTCCGAAACAATGTATT+AGG | + | chr1_4:73266387-73266406 | None:intergenic | 30.0% | |
| AAGTTCTACTTGATACTTGT+AGG | - | chr1_4:73266402-73266421 | Msa0184090:intron | 30.0% | |
| AAGAATTCACATGAATCTTG+GGG | + | chr1_4:73266552-73266571 | None:intergenic | 30.0% | |
| GAAAGAATTCACATGAATCT+TGG | + | chr1_4:73266554-73266573 | None:intergenic | 30.0% | |
| TATACCTTGATTTCATTGAG+GGG | + | chr1_4:73266581-73266600 | None:intergenic | 30.0% | |
| GTATATTTCACGATTCTCTA+GGG | - | chr1_4:73266596-73266615 | Msa0184090:intron | 30.0% | |
| ATCTCATGAGAGAACTATAT+AGG | - | chr1_4:73266643-73266662 | Msa0184090:intron | 30.0% | |
| AGGAACACTAAAATTCTCTT+TGG | + | chr1_4:73266978-73266997 | None:intergenic | 30.0% | |
| GTGTAACGTAATGACATAAT+GGG | + | chr1_4:73267077-73267096 | None:intergenic | 30.0% | |
| TACACCTTTCACAAGTTATA+TGG | - | chr1_4:73267092-73267111 | Msa0184090:intron | 30.0% | |
| ! | ATCATTGTTCTTTCTAGCAT+TGG | - | chr1_4:73267176-73267195 | Msa0184090:intron | 30.0% |
| ! | ATCATTGTTCTTTCTAGCAT+TGG | - | chr1_4:73267176-73267195 | Msa0184090:intron | 30.0% |
| CCTGAAAACAAAACAATAGT+CGG | + | chr1_4:73267569-73267588 | None:intergenic | 30.0% | |
| TCCAGAATCAGATAAAATAG+GGG | + | chr1_4:73267812-73267831 | None:intergenic | 30.0% | |
| GTCCAGAATCAGATAAAATA+GGG | + | chr1_4:73267813-73267832 | None:intergenic | 30.0% | |
| ! | GAACTCACAAATTTTAGACT+TGG | - | chr1_4:73267981-73268000 | Msa0184090:intron | 30.0% |
| ! | ACAAATTTTAGACTTGGAGT+GGG | - | chr1_4:73267987-73268006 | Msa0184090:intron | 30.0% |
| GTATTATCAATCCAAAGACT+AGG | - | chr1_4:73268074-73268093 | Msa0184090:intron | 30.0% | |
| !! | TTTCTGCTTTTGTTTACTTC+AGG | - | chr1_4:73268214-73268233 | Msa0184090:intron | 30.0% |
| ! | GAGATTTGAGATATTCATAG+GGG | - | chr1_4:73268277-73268296 | Msa0184090:five_prime_UTR | 30.0% |
| GAAAGAAGGAAAGAGATTGT+AGG | + | chr1_4:73265067-73265086 | None:intergenic | 35.0% | |
| GTGAAACAGGAATCATCTAT+TGG | - | chr1_4:73265134-73265153 | Msa0184090:three_prime_UTR | 35.0% | |
| TGCTCCTTATTCTGTTTACA+AGG | - | chr1_4:73265318-73265337 | Msa0184090:CDS | 35.0% | |
| GCTCCTTATTCTGTTTACAA+GGG | - | chr1_4:73265319-73265338 | Msa0184090:CDS | 35.0% | |
| TTGCCCTTGTAAACAGAATA+AGG | + | chr1_4:73265325-73265344 | None:intergenic | 35.0% | |
| AAAAACCAACCAGCGTAAAA+AGG | + | chr1_4:73265431-73265450 | None:intergenic | 35.0% | |
| !!! | TTTTACGCTGGTTGGTTTTT+AGG | - | chr1_4:73265431-73265450 | Msa0184090:intron | 35.0% |
| !!! | TTTACGCTGGTTGGTTTTTA+GGG | - | chr1_4:73265432-73265451 | Msa0184090:intron | 35.0% |
| !!! | GTTGGTTTTTAGGGTTTGTT+TGG | - | chr1_4:73265441-73265460 | Msa0184090:intron | 35.0% |
| ! | CAGATTAGTTAGACCATGTT+TGG | + | chr1_4:73265607-73265626 | None:intergenic | 35.0% |
| ! | CATTTCCATTTGTTACAGTC+TGG | - | chr1_4:73265641-73265660 | Msa0184090:intron | 35.0% |
| ! | TTTCCATTTGTTACAGTCTG+GGG | - | chr1_4:73265643-73265662 | Msa0184090:intron | 35.0% |
| AGGCATGAAACTCATCATTA+TGG | + | chr1_4:73265693-73265712 | None:intergenic | 35.0% | |
| CGAAGATTGATCATGAAGTT+CGG | - | chr1_4:73265851-73265870 | Msa0184090:intron | 35.0% | |
| ! | GAGAAAAGATCTGTTGACTA+TGG | + | chr1_4:73266206-73266225 | None:intergenic | 35.0% |
| AGAGTTTAAAGAGACATGAG+GGG | + | chr1_4:73266228-73266247 | None:intergenic | 35.0% | |
| CTTGGCCTAATACATTGTTT+CGG | - | chr1_4:73266379-73266398 | Msa0184090:intron | 35.0% | |
| TTCTACTTGATACTTGTAGG+AGG | - | chr1_4:73266405-73266424 | Msa0184090:intron | 35.0% | |
| GGTATATTTCACGATTCTCT+AGG | - | chr1_4:73266595-73266614 | Msa0184090:intron | 35.0% | |
| !! | TCTCTAGGGTTAGTAATTGA+TGG | - | chr1_4:73266610-73266629 | Msa0184090:intron | 35.0% |
| TCAATTAAGCCTCATAGCAA+TGG | - | chr1_4:73266803-73266822 | Msa0184090:intron | 35.0% | |
| AAGAGGGAGACAAAATCATA+AGG | + | chr1_4:73266925-73266944 | None:intergenic | 35.0% | |
| TTAACAACAGCTGTCAAAGA+GGG | + | chr1_4:73266941-73266960 | None:intergenic | 35.0% | |
| TGAGAAACTAAGCAGAAAAG+AGG | + | chr1_4:73267048-73267067 | None:intergenic | 35.0% | |
| GGTGTAACGTAATGACATAA+TGG | + | chr1_4:73267078-73267097 | None:intergenic | 35.0% | |
| ! | AGGACCATATAACTTGTGAA+AGG | + | chr1_4:73267099-73267118 | None:intergenic | 35.0% |
| AGACATGAAAAGCAGAAACT+AGG | + | chr1_4:73267119-73267138 | None:intergenic | 35.0% | |
| !! | TTGTTCTTTCTAGCATTGGT+AGG | - | chr1_4:73267180-73267199 | Msa0184090:intron | 35.0% |
| !! | TGTTCTTTCTAGCATTGGTA+GGG | - | chr1_4:73267181-73267200 | Msa0184090:intron | 35.0% |
| !! | TTGTTCTTTCTAGCATTGGT+AGG | - | chr1_4:73267180-73267199 | Msa0184090:intron | 35.0% |
| !! | TGTTCTTTCTAGCATTGGTA+GGG | - | chr1_4:73267181-73267200 | Msa0184090:intron | 35.0% |
| ! | TTTTATTGTCATTCCGGAAC+TGG | - | chr1_4:73267520-73267539 | Msa0184090:intron | 35.0% |
| !!! | CCGACTATTGTTTTGTTTTC+AGG | - | chr1_4:73267566-73267585 | Msa0184090:CDS | 35.0% |
| CATATACGCGAGTTAATCAT+AGG | + | chr1_4:73267636-73267655 | None:intergenic | 35.0% | |
| ! | ACTGCAATTTTTGAATGCGT+TGG | - | chr1_4:73267722-73267741 | Msa0184090:intron | 35.0% |
| AATCAGATAAAATAGGGGGT+GGG | + | chr1_4:73267807-73267826 | None:intergenic | 35.0% | |
| CCAGAATCAGATAAAATAGG+GGG | + | chr1_4:73267811-73267830 | None:intergenic | 35.0% | |
| GGTCCAGAATCAGATAAAAT+AGG | + | chr1_4:73267814-73267833 | None:intergenic | 35.0% | |
| ! | CACAAATTTTAGACTTGGAG+TGG | - | chr1_4:73267986-73268005 | Msa0184090:intron | 35.0% |
| TATCAATCCAAAGACTAGGA+TGG | - | chr1_4:73268078-73268097 | Msa0184090:CDS | 35.0% | |
| ! | TTTAAGAAGGAAGCATGAGA+AGG | - | chr1_4:73268131-73268150 | Msa0184090:intron | 35.0% |
| AATAGACAGTGTCACACATA+CGG | + | chr1_4:73268257-73268276 | None:intergenic | 35.0% | |
| ! | ATTTGAGATATTCATAGGGG+TGG | - | chr1_4:73268280-73268299 | Msa0184090:five_prime_UTR | 35.0% |
| GAAGGAAAGAGATTGTAGGA+GGG | + | chr1_4:73265063-73265082 | None:intergenic | 40.0% | |
| AGAAGGAAAGAGATTGTAGG+AGG | + | chr1_4:73265064-73265083 | None:intergenic | 40.0% | |
| TATTGGAAGTTCTTTCCGCT+AGG | - | chr1_4:73265151-73265170 | Msa0184090:three_prime_UTR | 40.0% | |
| ATTGGAAGTTCTTTCCGCTA+GGG | - | chr1_4:73265152-73265171 | Msa0184090:three_prime_UTR | 40.0% | |
| ! | ACATTCCTTTTTACGCTGGT+TGG | - | chr1_4:73265423-73265442 | Msa0184090:intron | 40.0% |
| ATGAGTTTCATGCCTGCTAT+TGG | - | chr1_4:73265698-73265717 | Msa0184090:intron | 40.0% | |
| TGAGTTTCATGCCTGCTATT+GGG | - | chr1_4:73265699-73265718 | Msa0184090:intron | 40.0% | |
| CACAATTGACAGAACTCTCA+TGG | + | chr1_4:73266021-73266040 | None:intergenic | 40.0% | |
| ATGACCCCTCAATGAAATCA+AGG | - | chr1_4:73266574-73266593 | Msa0184090:intron | 40.0% | |
| TTCTTATGCTGCAGTAATGC+TGG | - | chr1_4:73266761-73266780 | Msa0184090:CDS | 40.0% | |
| ACAAAGTAGCCATTGCTATG+AGG | + | chr1_4:73266815-73266834 | None:intergenic | 40.0% | |
| CTACTTTGTCTCTCTGTGTA+AGG | - | chr1_4:73266826-73266845 | Msa0184090:intron | 40.0% | |
| GTTAACAACAGCTGTCAAAG+AGG | + | chr1_4:73266942-73266961 | None:intergenic | 40.0% | |
| TGCTAAATGGTACGTACACT+AGG | + | chr1_4:73267236-73267255 | None:intergenic | 40.0% | |
| ACTCGCGTATATGAAGTTTC+AGG | - | chr1_4:73267643-73267662 | Msa0184090:intron | 40.0% | |
| CCAGCGAAGTTAAAAAACCA+GGG | + | chr1_4:73267757-73267776 | None:intergenic | 40.0% | |
| ACCAGCGAAGTTAAAAAACC+AGG | + | chr1_4:73267758-73267777 | None:intergenic | 40.0% | |
| ATCAGATAAAATAGGGGGTG+GGG | + | chr1_4:73267806-73267825 | None:intergenic | 40.0% | |
| GAATCAGATAAAATAGGGGG+TGG | + | chr1_4:73267808-73267827 | None:intergenic | 40.0% | |
| ! | CCCCCTATTTTATCTGATTC+TGG | - | chr1_4:73267808-73267827 | Msa0184090:intron | 40.0% |
| TTTGCGTTGCCACACATTAT+GGG | - | chr1_4:73267901-73267920 | Msa0184090:CDS | 40.0% | |
| TAACTAATCAGCAGTCCAGT+GGG | - | chr1_4:73267935-73267954 | Msa0184090:CDS | 40.0% | |
| TGGGAAAAGTGAGTTACTGT+TGG | - | chr1_4:73268006-73268025 | Msa0184090:intron | 40.0% | |
| TGGAATTGACAGCACAAAGA+AGG | + | chr1_4:73268048-73268067 | None:intergenic | 40.0% | |
| ATAGACAGTGTCACACATAC+GGG | + | chr1_4:73268256-73268275 | None:intergenic | 40.0% | |
| TAAGCGCTCGTGAAACTCAT+TGG | - | chr1_4:73265506-73265525 | Msa0184090:intron | 45.0% | |
| GAGTTTCATGCCTGCTATTG+GGG | - | chr1_4:73265700-73265719 | Msa0184090:intron | 45.0% | |
| GGACTATGCTATGCTCGTTT+AGG | - | chr1_4:73265993-73266012 | Msa0184090:intron | 45.0% | |
| ! | ACCGACTTCAGTAGCTGATA+GGG | + | chr1_4:73266511-73266530 | None:intergenic | 45.0% |
| ! | AACCGACTTCAGTAGCTGAT+AGG | + | chr1_4:73266512-73266531 | None:intergenic | 45.0% |
| ! | GTCGGTTCTTTGATAGCCAT+TGG | - | chr1_4:73266525-73266544 | Msa0184090:intron | 45.0% |
| ACATGAATCTTGGGGACCAA+TGG | + | chr1_4:73266544-73266563 | None:intergenic | 45.0% | |
| GCAGTAATGCTGGTCAAGTA+AGG | - | chr1_4:73266771-73266790 | Msa0184090:intron | 45.0% | |
| GCAAACTCAGCAGTTGTAAC+AGG | + | chr1_4:73266998-73267017 | None:intergenic | 45.0% | |
| ! | AAAGAGGCATACACTGCAAG+CGG | + | chr1_4:73267032-73267051 | None:intergenic | 45.0% |
| !! | TCTTTCTAGCATTGGTAGGG+AGG | - | chr1_4:73267184-73267203 | Msa0184090:intron | 45.0% |
| TACGTACCATTTAGCAACGC+AGG | - | chr1_4:73267240-73267259 | Msa0184090:intron | 45.0% | |
| ACAAGTCCTGCGTTGCTAAA+TGG | + | chr1_4:73267249-73267268 | None:intergenic | 45.0% | |
| CAGGACTTGTCATGCAACAT+TGG | - | chr1_4:73267259-73267278 | Msa0184090:intron | 45.0% | |
| !! | TCTTTCTAGCATTGGTAGGG+AGG | - | chr1_4:73267184-73267203 | Msa0184090:intron | 45.0% |
| GCGTTGCTAAATGGTACACT+AGG | + | chr1_4:73267388-73267407 | None:intergenic | 45.0% | |
| AGTGTACCATTTAGCAACGC+AGG | - | chr1_4:73267388-73267407 | Msa0184090:intron | 45.0% | |
| ACAAGTCCTGCGTTGCTAAA+TGG | + | chr1_4:73267249-73267268 | None:intergenic | 45.0% | |
| CAGGACTTGTCATGCAACAT+TGG | - | chr1_4:73267259-73267278 | Msa0184090:intron | 45.0% | |
| TATGCCATGTCTGGTCAAGT+TGG | - | chr1_4:73267543-73267562 | Msa0184090:CDS | 45.0% | |
| !!! | CCCTGGTTTTTTAACTTCGC+TGG | - | chr1_4:73267754-73267773 | Msa0184090:intron | 45.0% |
| GTTTGCGTTGCCACACATTA+TGG | - | chr1_4:73267900-73267919 | Msa0184090:CDS | 45.0% | |
| GTTGCCACACATTATGGGTT+GGG | - | chr1_4:73267906-73267925 | Msa0184090:CDS | 45.0% | |
| CTAACTAATCAGCAGTCCAG+TGG | - | chr1_4:73267934-73267953 | Msa0184090:CDS | 45.0% | |
| ! | CCACATACCATCCTAGTCTT+TGG | + | chr1_4:73268088-73268107 | None:intergenic | 45.0% |
| CCAAAGACTAGGATGGTATG+TGG | - | chr1_4:73268085-73268104 | Msa0184090:CDS | 45.0% | |
| !! | ACAAGAGGCACTTAGTTGGA+TGG | + | chr1_4:73268342-73268361 | None:intergenic | 45.0% |
| GCTTGCTTCCTTCATCTTCC+AGG | - | chr1_4:73265033-73265052 | Msa0184090:three_prime_UTR | 50.0% | |
| !! | AGGGAGTACCTGGAAGATGA+AGG | + | chr1_4:73265044-73265063 | None:intergenic | 50.0% |
| !! | AGATTGTAGGAGGGAGTACC+TGG | + | chr1_4:73265054-73265073 | None:intergenic | 50.0% |
| GGCAGTAGAGAAATCCCTAG+CGG | + | chr1_4:73265169-73265188 | None:intergenic | 50.0% | |
| GAGCCCCAGACTGTAACAAA+TGG | + | chr1_4:73265649-73265668 | None:intergenic | 50.0% | |
| !! | GCTCTTGTTGTTGATCGTCG+CGG | - | chr1_4:73265665-73265684 | Msa0184090:intron | 50.0% |
| TATTTGCGCTCCCCAATAGC+AGG | + | chr1_4:73265713-73265732 | None:intergenic | 50.0% | |
| ! | TTGGGGAGCGCAAATATGAC+TGG | - | chr1_4:73265717-73265736 | Msa0184090:intron | 50.0% |
| ! | TGGGGAGCGCAAATATGACT+GGG | - | chr1_4:73265718-73265737 | Msa0184090:intron | 50.0% |
| TGTATCGTAGCAGAGCGAGT+GGG | + | chr1_4:73266106-73266125 | None:intergenic | 50.0% | |
| GCCCTATCAGCTACTGAAGT+CGG | - | chr1_4:73266507-73266526 | Msa0184090:intron | 50.0% | |
| CAGACATGGCATACCAGTTC+CGG | + | chr1_4:73267536-73267555 | None:intergenic | 50.0% | |
| ! | TGCGTTGGTCTGTTATTCCC+TGG | - | chr1_4:73267737-73267756 | Msa0184090:intron | 50.0% |
| CGTTGCCACACATTATGGGT+TGG | - | chr1_4:73267905-73267924 | Msa0184090:CDS | 50.0% | |
| CGATCCCAACCCATAATGTG+TGG | + | chr1_4:73267913-73267932 | None:intergenic | 50.0% | |
| TTGAAAGCTGACTGTCCCAC+TGG | + | chr1_4:73267953-73267972 | None:intergenic | 50.0% | |
| GTGTATCGTAGCAGAGCGAG+TGG | + | chr1_4:73266107-73266126 | None:intergenic | 55.0% | |
| ! | ACCACGCAAGCAAGCTTGCT+GGG | + | chr1_4:73266279-73266298 | None:intergenic | 55.0% |
| CGGAACTGGTATGCCATGTC+TGG | - | chr1_4:73267534-73267553 | Msa0184090:intron | 55.0% | |
| TCGGCCAACTTGACCAGACA+TGG | + | chr1_4:73267550-73267569 | None:intergenic | 55.0% | |
| GACCACGCAAGCAAGCTTGC+TGG | + | chr1_4:73266280-73266299 | None:intergenic | 60.0% | |
| ! | GCAAGCTTGCTTGCGTGGTC+AGG | - | chr1_4:73266280-73266299 | Msa0184090:CDS | 60.0% |
| ! | GCCCAGCAAGCTTGCTTGCG+TGG | - | chr1_4:73266275-73266294 | Msa0184090:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 73264929 | 73268361 | 73264929 | ID=Msa0184090;Name=Msa0184090 |
| chr1_4 | mRNA | 73264929 | 73268361 | 73264929 | ID=Msa0184090-mRNA-1;Parent=Msa0184090;Name=Msa0184090-mRNA-1;_AED=0.07;_eAED=0.07;_QI=88|1|1|1|1|1|8|344|222 |
| chr1_4 | exon | 73264929 | 73265389 | 73264929 | ID=Msa0184090-mRNA-1:exon:24919;Parent=Msa0184090-mRNA-1 |
| chr1_4 | exon | 73266251 | 73266339 | 73266251 | ID=Msa0184090-mRNA-1:exon:24918;Parent=Msa0184090-mRNA-1 |
| chr1_4 | exon | 73266448 | 73266515 | 73266448 | ID=Msa0184090-mRNA-1:exon:24917;Parent=Msa0184090-mRNA-1 |
| chr1_4 | exon | 73266695 | 73266789 | 73266695 | ID=Msa0184090-mRNA-1:exon:24916;Parent=Msa0184090-mRNA-1 |
| chr1_4 | exon | 73267539 | 73267631 | 73267539 | ID=Msa0184090-mRNA-1:exon:24915;Parent=Msa0184090-mRNA-1 |
| chr1_4 | exon | 73267897 | 73267994 | 73267897 | ID=Msa0184090-mRNA-1:exon:24914;Parent=Msa0184090-mRNA-1 |
| chr1_4 | exon | 73268077 | 73268147 | 73268077 | ID=Msa0184090-mRNA-1:exon:24913;Parent=Msa0184090-mRNA-1 |
| chr1_4 | exon | 73268236 | 73268361 | 73268236 | ID=Msa0184090-mRNA-1:exon:24912;Parent=Msa0184090-mRNA-1 |
| chr1_4 | five_prime_UTR | 73268274 | 73268361 | 73268274 | ID=Msa0184090-mRNA-1:five_prime_utr;Parent=Msa0184090-mRNA-1 |
| chr1_4 | CDS | 73268236 | 73268273 | 73268236 | ID=Msa0184090-mRNA-1:cds;Parent=Msa0184090-mRNA-1 |
| chr1_4 | CDS | 73268077 | 73268147 | 73268077 | ID=Msa0184090-mRNA-1:cds;Parent=Msa0184090-mRNA-1 |
| chr1_4 | CDS | 73267897 | 73267994 | 73267897 | ID=Msa0184090-mRNA-1:cds;Parent=Msa0184090-mRNA-1 |
| chr1_4 | CDS | 73267539 | 73267631 | 73267539 | ID=Msa0184090-mRNA-1:cds;Parent=Msa0184090-mRNA-1 |
| chr1_4 | CDS | 73266695 | 73266789 | 73266695 | ID=Msa0184090-mRNA-1:cds;Parent=Msa0184090-mRNA-1 |
| chr1_4 | CDS | 73266448 | 73266515 | 73266448 | ID=Msa0184090-mRNA-1:cds;Parent=Msa0184090-mRNA-1 |
| chr1_4 | CDS | 73266251 | 73266339 | 73266251 | ID=Msa0184090-mRNA-1:cds;Parent=Msa0184090-mRNA-1 |
| chr1_4 | CDS | 73265273 | 73265389 | 73265273 | ID=Msa0184090-mRNA-1:cds;Parent=Msa0184090-mRNA-1 |
| chr1_4 | three_prime_UTR | 73264929 | 73265272 | 73264929 | ID=Msa0184090-mRNA-1:three_prime_utr;Parent=Msa0184090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
