Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430210 | XP_003626470.1 | 97.297 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 8.83e-159 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430210 | sp|Q8VYF7|WHY2_ARATH | 57.983 | 238 | 84 | 4 | 1 | 222 | 1 | 238 | 7.23e-90 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430210 | G7L2W4 | 97.297 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 4.22e-159 | 448 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1430210 | TF | Whirly |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0184090 | Msa1430210 | 0.998463 | 7.963587e-266 | -8.615850e-47 |
| Msa1129900 | Msa1430210 | 0.974053 | 1.753970e-137 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430210 | MtrunA17_Chr7g0274781 | 97.297 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 8.12e-163 | 448 |
| Msa1430210 | MtrunA17_Chr5g0416091 | 39.894 | 188 | 109 | 2 | 37 | 222 | 76 | 261 | 2.73e-47 | 156 |
| Msa1430210 | MtrunA17_Chr8g0362331 | 40.244 | 164 | 96 | 1 | 37 | 198 | 75 | 238 | 4.12e-47 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430210 | AT1G71260.1 | 57.983 | 238 | 84 | 4 | 1 | 222 | 1 | 238 | 7.35e-91 | 267 |
| Msa1430210 | AT2G02740.1 | 42.408 | 191 | 100 | 4 | 39 | 222 | 81 | 268 | 1.11e-51 | 168 |
| Msa1430210 | AT1G14410.1 | 40.838 | 191 | 96 | 3 | 42 | 222 | 80 | 263 | 1.72e-51 | 167 |
Find 71 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGCGTTGCCACACATTA+TGG | 0.228816 | tig0026643:-47464 | Msa1430210:CDS |
| TGGATTGATAATACACAAAA+TGG | 0.253128 | tig0026643:+47299 | None:intergenic |
| CCACATACCATCCTAGTCTT+TGG | 0.268936 | tig0026643:+47279 | None:intergenic |
| GCTTGCTTCCTTCATCTTCC+AGG | 0.275752 | tig0026643:-50368 | Msa1430210:intron |
| TTGCCCTTGTAAACAGAATA+AGG | 0.288907 | tig0026643:+50079 | None:intergenic |
| AAAATTTGTGAGTTCATCTT+TGG | 0.301520 | tig0026643:+47391 | None:intergenic |
| TTGAGATTTGAGATATTCAT+AGG | 0.312010 | tig0026643:-47089 | Msa1430210:three_prime_UTR |
| AGGAACACTAAAATTCTCTT+TGG | 0.325050 | tig0026643:+48388 | None:intergenic |
| ATGAGTTTCATGCCTGCTAT+TGG | 0.341936 | tig0026643:-49703 | Msa1430210:CDS |
| GAAAGAATTCACATGAATCT+TGG | 0.354145 | tig0026643:+48812 | None:intergenic |
| AAAGAATTCACATGAATCTT+GGG | 0.363397 | tig0026643:+48813 | None:intergenic |
| AAATATTATAGAATTTCATT+TGG | 0.366650 | tig0026643:+47054 | None:intergenic |
| TGAGTTTCATGCCTGCTATT+GGG | 0.372914 | tig0026643:-49702 | Msa1430210:CDS |
| GCAAACTCAGCAGTTGTAAC+AGG | 0.373789 | tig0026643:+48368 | None:intergenic |
| AGGCATGAAACTCATCATTA+TGG | 0.404570 | tig0026643:+49711 | None:intergenic |
| GTGAAACAGGAATCATCTAT+TGG | 0.407409 | tig0026643:-50267 | Msa1430210:intron |
| TTTGCGTTGCCACACATTAT+GGG | 0.408601 | tig0026643:-47463 | Msa1430210:CDS |
| AGCAGAATAGTTGTTATTTG+TGG | 0.411050 | tig0026643:+50214 | None:intergenic |
| TACTGTTGGAAAATATGAAA+TGG | 0.421099 | tig0026643:-47344 | Msa1430210:three_prime_UTR |
| TGCTCCTTATTCTGTTTACA+AGG | 0.424645 | tig0026643:-50083 | Msa1430210:CDS |
| GTTGCCACACATTATGGGTT+GGG | 0.425766 | tig0026643:-47458 | Msa1430210:CDS |
| AACCGACTTCAGTAGCTGAT+AGG | 0.440719 | tig0026643:+48854 | None:intergenic |
| CGTTGCCACACATTATGGGT+TGG | 0.443320 | tig0026643:-47459 | Msa1430210:CDS |
| ATATACCTTGATTTCATTGA+GGG | 0.447907 | tig0026643:+48784 | None:intergenic |
| GTAAATTGTAATATTTAAGA+AGG | 0.449316 | tig0026643:-47246 | Msa1430210:three_prime_UTR |
| GTCGGTTCTTTGATAGCCAT+TGG | 0.458218 | tig0026643:-48838 | Msa1430210:CDS |
| TTCTTATGCTGCAGTAATGC+TGG | 0.463315 | tig0026643:-48602 | Msa1430210:intron |
| TTGGGGAGCGCAAATATGAC+TGG | 0.493872 | tig0026643:-49684 | Msa1430210:CDS |
| GCAGTAATGCTGGTCAAGTA+AGG | 0.498490 | tig0026643:-48592 | Msa1430210:intron |
| AATAACAACTATTCTGCTAA+AGG | 0.500782 | tig0026643:-50209 | Msa1430210:intron |
| TGAGATTTGAGATATTCATA+GGG | 0.512047 | tig0026643:-47088 | Msa1430210:three_prime_UTR |
| GAGTTTCATGCCTGCTATTG+GGG | 0.513089 | tig0026643:-49701 | Msa1430210:CDS |
| ATTGGAAGTTCTTTCCGCTA+GGG | 0.516317 | tig0026643:-50249 | Msa1430210:CDS |
| ATGACCCCTCAATGAAATCA+AGG | 0.516531 | tig0026643:-48789 | Msa1430210:intron |
| TTGAAAGCTGACTGTCCCAC+TGG | 0.516551 | tig0026643:+47414 | None:intergenic |
| AATAGACAGTGTCACACATA+CGG | 0.516634 | tig0026643:+47110 | None:intergenic |
| ATTTGAGATATTCATAGGGG+TGG | 0.523214 | tig0026643:-47084 | Msa1430210:three_prime_UTR |
| TGGAATTGACAGCACAAAGA+AGG | 0.524145 | tig0026643:+47319 | None:intergenic |
| AATATACCTTGATTTCATTG+AGG | 0.524866 | tig0026643:+48783 | None:intergenic |
| TGCAACAAGAGGCACTTAGT+TGG | 0.525081 | tig0026643:+47021 | None:intergenic |
| GCCCTATCAGCTACTGAAGT+CGG | 0.527679 | tig0026643:-48856 | Msa1430210:CDS |
| ACCGACTTCAGTAGCTGATA+GGG | 0.538316 | tig0026643:+48855 | None:intergenic |
| AGGGAGTACCTGGAAGATGA+AGG | 0.540073 | tig0026643:+50360 | None:intergenic |
| TATTTGCGCTCCCCAATAGC+AGG | 0.541622 | tig0026643:+49691 | None:intergenic |
| TATTGGAAGTTCTTTCCGCT+AGG | 0.545874 | tig0026643:-50250 | Msa1430210:CDS |
| TTACTTTAGTATGCAACAAG+AGG | 0.546089 | tig0026643:+47010 | None:intergenic |
| ACAAAGTAGCCATTGCTATG+AGG | 0.558527 | tig0026643:+48551 | None:intergenic |
| ACATGAATCTTGGGGACCAA+TGG | 0.561311 | tig0026643:+48822 | None:intergenic |
| CCAAAGACTAGGATGGTATG+TGG | 0.561736 | tig0026643:-47279 | Msa1430210:three_prime_UTR |
| TGGGAAAAGTGAGTTACTGT+TGG | 0.566690 | tig0026643:-47358 | Msa1430210:exon |
| TCAATTAAGCCTCATAGCAA+TGG | 0.569726 | tig0026643:-48560 | Msa1430210:CDS |
| TTTAAGAAGGAAGCATGAGA+AGG | 0.571675 | tig0026643:-47233 | Msa1430210:three_prime_UTR |
| ACAAGAGGCACTTAGTTGGA+TGG | 0.574290 | tig0026643:+47025 | None:intergenic |
| ACATCCAACTTAGTAAAAGT+AGG | 0.596084 | tig0026643:+50028 | None:intergenic |
| GAGATTTGAGATATTCATAG+GGG | 0.608018 | tig0026643:-47087 | Msa1430210:three_prime_UTR |
| GCTCCTTATTCTGTTTACAA+GGG | 0.608711 | tig0026643:-50082 | Msa1430210:CDS |
| ATTCTCTTTGGTATTTAACA+CGG | 0.610530 | tig0026643:+48400 | None:intergenic |
| TATACCTTGATTTCATTGAG+GGG | 0.613978 | tig0026643:+48785 | None:intergenic |
| ATAGACAGTGTCACACATAC+GGG | 0.614266 | tig0026643:+47111 | None:intergenic |
| TAACTAATCAGCAGTCCAGT+GGG | 0.621978 | tig0026643:-47429 | Msa1430210:CDS |
| TATCAATCCAAAGACTAGGA+TGG | 0.631463 | tig0026643:-47286 | Msa1430210:three_prime_UTR |
| GTATTATCAATCCAAAGACT+AGG | 0.633141 | tig0026643:-47290 | Msa1430210:three_prime_UTR |
| AAGAATTCACATGAATCTTG+GGG | 0.637953 | tig0026643:+48814 | None:intergenic |
| AAAGAGGCATACACTGCAAG+CGG | 0.640513 | tig0026643:+48334 | None:intergenic |
| TGGGGAGCGCAAATATGACT+GGG | 0.642764 | tig0026643:-49683 | Msa1430210:CDS |
| CTAACTAATCAGCAGTCCAG+TGG | 0.653328 | tig0026643:-47430 | Msa1430210:CDS |
| TTAGTAAAAGTAGGAAGACA+AGG | 0.653333 | tig0026643:+50037 | None:intergenic |
| CGATCCCAACCCATAATGTG+TGG | 0.655749 | tig0026643:+47454 | None:intergenic |
| GTGTTCAATTCAAAATGTCG+AGG | 0.671963 | tig0026643:+50474 | None:intergenic |
| GCTCTTGTTGTTGATCGTCG+CGG | 0.693088 | tig0026643:-49736 | Msa1430210:CDS |
| GGCAGTAGAGAAATCCCTAG+CGG | 0.738730 | tig0026643:+50235 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATAGAATTTCATT+TGG | + | tig0026643:50446-50465 | None:intergenic | 10.0% |
| !! | TATTAATGAATGAAAAATTG+GGG | + | tig0026643:47056-47075 | None:intergenic | 15.0% |
| !! | CTATTAATGAATGAAAAATT+GGG | + | tig0026643:47057-47076 | None:intergenic | 15.0% |
| !! | AATGATAATAAAAGAAAGTT+TGG | + | tig0026643:49448-49467 | None:intergenic | 15.0% |
| !! | GTAAATTGTAATATTTAAGA+AGG | - | tig0026643:50251-50270 | Msa1430210:CDS | 15.0% |
| !! | GCTATTAATGAATGAAAAAT+TGG | + | tig0026643:47058-47077 | None:intergenic | 20.0% |
| !! | TGTTATTATTATTGTGAAAC+AGG | - | tig0026643:47217-47236 | Msa1430210:three_prime_UTR | 20.0% |
| !!! | ATTTTTATGCTTACATTGAT+TGG | - | tig0026643:47344-47363 | Msa1430210:three_prime_UTR | 20.0% |
| !! | AGGAATGTATTTAAATGATT+AGG | + | tig0026643:47507-47526 | None:intergenic | 20.0% |
| !! | AAGAAAGAAGAAAGAATAAA+AGG | + | tig0026643:47862-47881 | None:intergenic | 20.0% |
| !! | ACAAAACAGTTTAAATACTA+TGG | - | tig0026643:48035-48054 | Msa1430210:intron | 20.0% |
| !! | ATTCTCTATTACAAAAAGAA+AGG | + | tig0026643:48480-48499 | None:intergenic | 20.0% |
| !! | TCAACAAACAAAAAAACTAA+TGG | + | tig0026643:48835-48854 | None:intergenic | 20.0% |
| !!! | TTTTAATACATTGGGTATTT+GGG | - | tig0026643:49006-49025 | Msa1430210:intron | 20.0% |
| !! | TTAAAAATGTTGAATCAAGT+TGG | + | tig0026643:49596-49615 | None:intergenic | 20.0% |
| ! | ATAACAGAGAAATTGAAAGA+AGG | + | tig0026643:47177-47196 | None:intergenic | 25.0% |
| ! | AATAACAACTATTCTGCTAA+AGG | - | tig0026643:47288-47307 | Msa1430210:three_prime_UTR | 25.0% |
| ! | ATATTATATGCTTCACTTTC+AGG | - | tig0026643:47370-47389 | Msa1430210:CDS | 25.0% |
| ! | GAATAAGCTATTTGTATAAG+CGG | + | tig0026643:47652-47671 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+TGG | - | tig0026643:47687-47706 | Msa1430210:intron | 25.0% |
| ! | ATTACAAGTTTACAAAGTAG+TGG | - | tig0026643:48063-48082 | Msa1430210:intron | 25.0% |
| ! | AAATGCTCTTAAGAGTTTAA+AGG | + | tig0026643:48381-48400 | None:intergenic | 25.0% |
| ! | TAAAAGTTGAAAACATGAAG+CGG | + | tig0026643:48453-48472 | None:intergenic | 25.0% |
| ! | AGAATAACATATTGTCAACT+TGG | - | tig0026643:48495-48514 | Msa1430210:intron | 25.0% |
| ! | AAAGAATTCACATGAATCTT+GGG | + | tig0026643:48687-48706 | None:intergenic | 25.0% |
| ! | ATATACCTTGATTTCATTGA+GGG | + | tig0026643:48716-48735 | None:intergenic | 25.0% |
| ! | AATATACCTTGATTTCATTG+AGG | + | tig0026643:48717-48736 | None:intergenic | 25.0% |
| ! | TCTCTCATGAGATAATTAAT+TGG | + | tig0026643:48770-48789 | None:intergenic | 25.0% |
| ! | GTCACTAATTAACTTTCAAA+TGG | + | tig0026643:48865-48884 | None:intergenic | 25.0% |
| !! | TTGTTCACCTTTTAATACAT+TGG | - | tig0026643:48997-49016 | Msa1430210:intron | 25.0% |
| !! | TGTTCACCTTTTAATACATT+GGG | - | tig0026643:48998-49017 | Msa1430210:intron | 25.0% |
| ! | CAAATACCCAATGTATTAAA+AGG | + | tig0026643:49007-49026 | None:intergenic | 25.0% |
| !! | CTTTTAATACATTGGGTATT+TGG | - | tig0026643:49005-49024 | Msa1430210:intron | 25.0% |
| ! | ATTCTCTTTGGTATTTAACA+CGG | + | tig0026643:49100-49119 | None:intergenic | 25.0% |
| ! | TGTCTTAAATAACAATGAAG+TGG | - | tig0026643:49268-49287 | Msa1430210:intron | 25.0% |
| !! | TTACACTTTTATTGTCATTC+CGG | - | tig0026643:49647-49666 | Msa1430210:intron | 25.0% |
| !!! | TTTTGTTTTCAGGTAATGAT+TGG | - | tig0026643:49709-49728 | Msa1430210:CDS | 25.0% |
| ! | TTCAAAAATTGCAGTTAACT+AGG | + | tig0026643:49850-49869 | None:intergenic | 25.0% |
| !! | TTAAAAGCACAAGTATGATT+GGG | + | tig0026643:49968-49987 | None:intergenic | 25.0% |
| !! | ATTAAAAGCACAAGTATGAT+TGG | + | tig0026643:49969-49988 | None:intergenic | 25.0% |
| ! | AAAATTTGTGAGTTCATCTT+TGG | + | tig0026643:50109-50128 | None:intergenic | 25.0% |
| ! | TACTGTTGGAAAATATGAAA+TGG | - | tig0026643:50153-50172 | Msa1430210:intron | 25.0% |
| !! | TGGATTGATAATACACAAAA+TGG | + | tig0026643:50201-50220 | None:intergenic | 25.0% |
| ! | AAGCAGAAAAAGAATAAACA+AGG | + | tig0026643:50336-50355 | None:intergenic | 25.0% |
| !! | TTGAGATTTGAGATATTCAT+AGG | - | tig0026643:50408-50427 | Msa1430210:five_prime_UTR | 25.0% |
| !! | TGAGATTTGAGATATTCATA+GGG | - | tig0026643:50409-50428 | Msa1430210:five_prime_UTR | 25.0% |
| !! | AGCAGAATAGTTGTTATTTG+TGG | + | tig0026643:47286-47305 | None:intergenic | 30.0% |
| TTAGTAAAAGTAGGAAGACA+AGG | + | tig0026643:47463-47482 | None:intergenic | 30.0% | |
| !! | TCTTCCTACTTTTACTAAGT+TGG | - | tig0026643:47465-47484 | Msa1430210:CDS | 30.0% |
| ACATCCAACTTAGTAAAAGT+AGG | + | tig0026643:47472-47491 | None:intergenic | 30.0% | |
| ! | AAATACATTCCTTTTTACGC+TGG | - | tig0026643:47515-47534 | Msa1430210:intron | 30.0% |
| ! | ATTTCCATTTGTTACAGTCT+GGG | - | tig0026643:47738-47757 | Msa1430210:intron | 30.0% |
| AATTGTGTTTACGTCTATTG+TGG | - | tig0026643:47969-47988 | Msa1430210:intron | 30.0% | |
| AACTTCCGAAACAATGTATT+AGG | + | tig0026643:48521-48540 | None:intergenic | 30.0% | |
| AAGTTCTACTTGATACTTGT+AGG | - | tig0026643:48536-48555 | Msa1430210:intron | 30.0% | |
| AAGAATTCACATGAATCTTG+GGG | + | tig0026643:48686-48705 | None:intergenic | 30.0% | |
| GAAAGAATTCACATGAATCT+TGG | + | tig0026643:48688-48707 | None:intergenic | 30.0% | |
| TATACCTTGATTTCATTGAG+GGG | + | tig0026643:48715-48734 | None:intergenic | 30.0% | |
| GTATATTTCACGATTCTCTA+GGG | - | tig0026643:48730-48749 | Msa1430210:intron | 30.0% | |
| ATCTCATGAGAGAACTATAT+AGG | - | tig0026643:48777-48796 | Msa1430210:intron | 30.0% | |
| AGGAACACTAAAATTCTCTT+TGG | + | tig0026643:49112-49131 | None:intergenic | 30.0% | |
| GTGTAACGTAATGACATAAT+GGG | + | tig0026643:49211-49230 | None:intergenic | 30.0% | |
| TACACCTTTCACAAGTTATA+TGG | - | tig0026643:49226-49245 | Msa1430210:intron | 30.0% | |
| ! | ATCATTGTTCTTTCTAGCAT+TGG | - | tig0026643:49310-49329 | Msa1430210:intron | 30.0% |
| ! | ATCATTGTTCTTTCTAGCAT+TGG | - | tig0026643:49310-49329 | Msa1430210:intron | 30.0% |
| CCTGAAAACAAAACAATAGT+CGG | + | tig0026643:49702-49721 | None:intergenic | 30.0% | |
| TCCAGAATCAGATAAAATAG+GGG | + | tig0026643:49945-49964 | None:intergenic | 30.0% | |
| GTCCAGAATCAGATAAAATA+GGG | + | tig0026643:49946-49965 | None:intergenic | 30.0% | |
| ! | GAACTCACAAATTTTAGACT+TGG | - | tig0026643:50114-50133 | Msa1430210:intron | 30.0% |
| ! | ACAAATTTTAGACTTGGAGT+GGG | - | tig0026643:50120-50139 | Msa1430210:intron | 30.0% |
| GTATTATCAATCCAAAGACT+AGG | - | tig0026643:50207-50226 | Msa1430210:intron | 30.0% | |
| !! | TTTCTGCTTTTGTTTACTTC+AGG | - | tig0026643:50347-50366 | Msa1430210:intron | 30.0% |
| ! | GAGATTTGAGATATTCATAG+GGG | - | tig0026643:50410-50429 | Msa1430210:five_prime_UTR | 30.0% |
| GAAAGAAGGAAAGAGATTGT+AGG | + | tig0026643:47163-47182 | None:intergenic | 35.0% | |
| GTGAAACAGGAATCATCTAT+TGG | - | tig0026643:47230-47249 | Msa1430210:three_prime_UTR | 35.0% | |
| TGCTCCTTATTCTGTTTACA+AGG | - | tig0026643:47414-47433 | Msa1430210:CDS | 35.0% | |
| GCTCCTTATTCTGTTTACAA+GGG | - | tig0026643:47415-47434 | Msa1430210:CDS | 35.0% | |
| TTGCCCTTGTAAACAGAATA+AGG | + | tig0026643:47421-47440 | None:intergenic | 35.0% | |
| AAAAACCAACCAGCGTAAAA+AGG | + | tig0026643:47527-47546 | None:intergenic | 35.0% | |
| !!! | TTTTACGCTGGTTGGTTTTT+AGG | - | tig0026643:47527-47546 | Msa1430210:intron | 35.0% |
| !!! | TTTACGCTGGTTGGTTTTTA+GGG | - | tig0026643:47528-47547 | Msa1430210:intron | 35.0% |
| !!! | GTTGGTTTTTAGGGTTTGTT+TGG | - | tig0026643:47537-47556 | Msa1430210:intron | 35.0% |
| ! | CAGATTAGTTAGACCATGTT+TGG | + | tig0026643:47703-47722 | None:intergenic | 35.0% |
| ! | CATTTCCATTTGTTACAGTC+TGG | - | tig0026643:47737-47756 | Msa1430210:intron | 35.0% |
| ! | TTTCCATTTGTTACAGTCTG+GGG | - | tig0026643:47739-47758 | Msa1430210:intron | 35.0% |
| AGGCATGAAACTCATCATTA+TGG | + | tig0026643:47789-47808 | None:intergenic | 35.0% | |
| CGAAGATTGATCATGAAGTT+CGG | - | tig0026643:47944-47963 | Msa1430210:intron | 35.0% | |
| CTTGGCCTAATACATTGTTT+CGG | - | tig0026643:48513-48532 | Msa1430210:intron | 35.0% | |
| TTCTACTTGATACTTGTAGG+AGG | - | tig0026643:48539-48558 | Msa1430210:intron | 35.0% | |
| GGTATATTTCACGATTCTCT+AGG | - | tig0026643:48729-48748 | Msa1430210:intron | 35.0% | |
| !! | TCTCTAGGGTTAGTAATTGA+TGG | - | tig0026643:48744-48763 | Msa1430210:intron | 35.0% |
| TCAATTAAGCCTCATAGCAA+TGG | - | tig0026643:48937-48956 | Msa1430210:intron | 35.0% | |
| AAGAGGGAGACAAAATCATA+AGG | + | tig0026643:49059-49078 | None:intergenic | 35.0% | |
| TTAACAACAGCTGTCAAAGA+GGG | + | tig0026643:49075-49094 | None:intergenic | 35.0% | |
| TGAGAAACTAAGCAGAAAAG+AGG | + | tig0026643:49182-49201 | None:intergenic | 35.0% | |
| GGTGTAACGTAATGACATAA+TGG | + | tig0026643:49212-49231 | None:intergenic | 35.0% | |
| ! | AGGACCATATAACTTGTGAA+AGG | + | tig0026643:49233-49252 | None:intergenic | 35.0% |
| AGACATGAAAAGCAGAAACT+AGG | + | tig0026643:49253-49272 | None:intergenic | 35.0% | |
| !! | TTGTTCTTTCTAGCATTGGT+AGG | - | tig0026643:49314-49333 | Msa1430210:intron | 35.0% |
| !! | TGTTCTTTCTAGCATTGGTA+GGG | - | tig0026643:49315-49334 | Msa1430210:intron | 35.0% |
| !! | TTGTTCTTTCTAGCATTGGT+AGG | - | tig0026643:49314-49333 | Msa1430210:intron | 35.0% |
| !! | TGTTCTTTCTAGCATTGGTA+GGG | - | tig0026643:49315-49334 | Msa1430210:intron | 35.0% |
| ! | TTTTATTGTCATTCCGGAAC+TGG | - | tig0026643:49653-49672 | Msa1430210:intron | 35.0% |
| !!! | CCGACTATTGTTTTGTTTTC+AGG | - | tig0026643:49699-49718 | Msa1430210:CDS | 35.0% |
| CATATACGCGAGTTAATCAT+AGG | + | tig0026643:49769-49788 | None:intergenic | 35.0% | |
| ! | ACTGCAATTTTTGAATGCGT+TGG | - | tig0026643:49855-49874 | Msa1430210:intron | 35.0% |
| AATCAGATAAAATAGGGGGT+GGG | + | tig0026643:49940-49959 | None:intergenic | 35.0% | |
| CCAGAATCAGATAAAATAGG+GGG | + | tig0026643:49944-49963 | None:intergenic | 35.0% | |
| GGTCCAGAATCAGATAAAAT+AGG | + | tig0026643:49947-49966 | None:intergenic | 35.0% | |
| ! | CACAAATTTTAGACTTGGAG+TGG | - | tig0026643:50119-50138 | Msa1430210:intron | 35.0% |
| TATCAATCCAAAGACTAGGA+TGG | - | tig0026643:50211-50230 | Msa1430210:CDS | 35.0% | |
| ! | TTTAAGAAGGAAGCATGAGA+AGG | - | tig0026643:50264-50283 | Msa1430210:intron | 35.0% |
| AATAGACAGTGTCACACATA+CGG | + | tig0026643:50390-50409 | None:intergenic | 35.0% | |
| ! | ATTTGAGATATTCATAGGGG+TGG | - | tig0026643:50413-50432 | Msa1430210:five_prime_UTR | 35.0% |
| GAAGGAAAGAGATTGTAGGA+GGG | + | tig0026643:47159-47178 | None:intergenic | 40.0% | |
| AGAAGGAAAGAGATTGTAGG+AGG | + | tig0026643:47160-47179 | None:intergenic | 40.0% | |
| TATTGGAAGTTCTTTCCGCT+AGG | - | tig0026643:47247-47266 | Msa1430210:three_prime_UTR | 40.0% | |
| ATTGGAAGTTCTTTCCGCTA+GGG | - | tig0026643:47248-47267 | Msa1430210:three_prime_UTR | 40.0% | |
| ! | ACATTCCTTTTTACGCTGGT+TGG | - | tig0026643:47519-47538 | Msa1430210:intron | 40.0% |
| ATGAGTTTCATGCCTGCTAT+TGG | - | tig0026643:47794-47813 | Msa1430210:intron | 40.0% | |
| TGAGTTTCATGCCTGCTATT+GGG | - | tig0026643:47795-47814 | Msa1430210:intron | 40.0% | |
| TCAATTGACACGAACTCTCA+TGG | + | tig0026643:48112-48131 | None:intergenic | 40.0% | |
| ATGACCCCTCAATGAAATCA+AGG | - | tig0026643:48708-48727 | Msa1430210:intron | 40.0% | |
| TTCTTATGCTGCAGTAATGC+TGG | - | tig0026643:48895-48914 | Msa1430210:intron | 40.0% | |
| ACAAAGTAGCCATTGCTATG+AGG | + | tig0026643:48949-48968 | None:intergenic | 40.0% | |
| CTACTTTGTCTCTCTGTGTA+AGG | - | tig0026643:48960-48979 | Msa1430210:intron | 40.0% | |
| GTTAACAACAGCTGTCAAAG+AGG | + | tig0026643:49076-49095 | None:intergenic | 40.0% | |
| TGCTAAATGGTACGTACACT+AGG | + | tig0026643:49370-49389 | None:intergenic | 40.0% | |
| ACTCGCGTATATGAAGTTTC+AGG | - | tig0026643:49776-49795 | Msa1430210:intron | 40.0% | |
| CCAGCGAAGTTAAAAAACCA+GGG | + | tig0026643:49890-49909 | None:intergenic | 40.0% | |
| ACCAGCGAAGTTAAAAAACC+AGG | + | tig0026643:49891-49910 | None:intergenic | 40.0% | |
| ATCAGATAAAATAGGGGGTG+GGG | + | tig0026643:49939-49958 | None:intergenic | 40.0% | |
| GAATCAGATAAAATAGGGGG+TGG | + | tig0026643:49941-49960 | None:intergenic | 40.0% | |
| ! | CCCCCTATTTTATCTGATTC+TGG | - | tig0026643:49941-49960 | Msa1430210:intron | 40.0% |
| TTTGCGTTGCCACACATTAT+GGG | - | tig0026643:50034-50053 | Msa1430210:CDS | 40.0% | |
| TAACTAATCAGCAGTCCAGT+GGG | - | tig0026643:50068-50087 | Msa1430210:CDS | 40.0% | |
| TGGGAAAAGTGAGTTACTGT+TGG | - | tig0026643:50139-50158 | Msa1430210:intron | 40.0% | |
| TGGAATTGACAGCACAAAGA+AGG | + | tig0026643:50181-50200 | None:intergenic | 40.0% | |
| ATAGACAGTGTCACACATAC+GGG | + | tig0026643:50389-50408 | None:intergenic | 40.0% | |
| TAAGCGCTCGTGAAACTCAT+TGG | - | tig0026643:47602-47621 | Msa1430210:intron | 45.0% | |
| GAGTTTCATGCCTGCTATTG+GGG | - | tig0026643:47796-47815 | Msa1430210:intron | 45.0% | |
| GGACTATGCTATGCTCGTTT+AGG | - | tig0026643:48084-48103 | Msa1430210:intron | 45.0% | |
| !! | AGTGTCGACACTAGATGTTC+AGG | - | tig0026643:48229-48248 | Msa1430210:intron | 45.0% |
| ! | ACCGACTTCAGTAGCTGATA+GGG | + | tig0026643:48645-48664 | None:intergenic | 45.0% |
| ! | AACCGACTTCAGTAGCTGAT+AGG | + | tig0026643:48646-48665 | None:intergenic | 45.0% |
| ! | GTCGGTTCTTTGATAGCCAT+TGG | - | tig0026643:48659-48678 | Msa1430210:intron | 45.0% |
| ACATGAATCTTGGGGACCAA+TGG | + | tig0026643:48678-48697 | None:intergenic | 45.0% | |
| GCAGTAATGCTGGTCAAGTA+AGG | - | tig0026643:48905-48924 | Msa1430210:intron | 45.0% | |
| GCAAACTCAGCAGTTGTAAC+AGG | + | tig0026643:49132-49151 | None:intergenic | 45.0% | |
| ! | AAAGAGGCATACACTGCAAG+CGG | + | tig0026643:49166-49185 | None:intergenic | 45.0% |
| !! | TCTTTCTAGCATTGGTAGGG+AGG | - | tig0026643:49318-49337 | Msa1430210:intron | 45.0% |
| TACGTACCATTTAGCAACGC+AGG | - | tig0026643:49374-49393 | Msa1430210:intron | 45.0% | |
| ACAAGTCCTGCGTTGCTAAA+TGG | + | tig0026643:49383-49402 | None:intergenic | 45.0% | |
| CAGGACTTGTCATGCAACAT+TGG | - | tig0026643:49393-49412 | Msa1430210:intron | 45.0% | |
| !! | TCTTTCTAGCATTGGTAGGG+AGG | - | tig0026643:49318-49337 | Msa1430210:intron | 45.0% |
| GCGTTGCTAAATGGTACACT+AGG | + | tig0026643:49522-49541 | None:intergenic | 45.0% | |
| AGTGTACCATTTAGCAACGC+AGG | - | tig0026643:49522-49541 | Msa1430210:intron | 45.0% | |
| ACAAGTCCTGCGTTGCTAAA+TGG | + | tig0026643:49383-49402 | None:intergenic | 45.0% | |
| CAGGACTTGTCATGCAACAT+TGG | - | tig0026643:49393-49412 | Msa1430210:intron | 45.0% | |
| TATGCCATGTCTGGTCAAGT+TGG | - | tig0026643:49676-49695 | Msa1430210:CDS | 45.0% | |
| !!! | CCCTGGTTTTTTAACTTCGC+TGG | - | tig0026643:49887-49906 | Msa1430210:intron | 45.0% |
| GTTTGCGTTGCCACACATTA+TGG | - | tig0026643:50033-50052 | Msa1430210:CDS | 45.0% | |
| GTTGCCACACATTATGGGTT+GGG | - | tig0026643:50039-50058 | Msa1430210:CDS | 45.0% | |
| CTAACTAATCAGCAGTCCAG+TGG | - | tig0026643:50067-50086 | Msa1430210:CDS | 45.0% | |
| ! | CCACATACCATCCTAGTCTT+TGG | + | tig0026643:50221-50240 | None:intergenic | 45.0% |
| CCAAAGACTAGGATGGTATG+TGG | - | tig0026643:50218-50237 | Msa1430210:CDS | 45.0% | |
| !! | ACAAGAGGCACTTAGTTGGA+TGG | + | tig0026643:50475-50494 | None:intergenic | 45.0% |
| GCTTGCTTCCTTCATCTTCC+AGG | - | tig0026643:47129-47148 | Msa1430210:three_prime_UTR | 50.0% | |
| !! | AGGGAGTACCTGGAAGATGA+AGG | + | tig0026643:47140-47159 | None:intergenic | 50.0% |
| !! | AGATTGTAGGAGGGAGTACC+TGG | + | tig0026643:47150-47169 | None:intergenic | 50.0% |
| GGCAGTAGAGAAATCCCTAG+CGG | + | tig0026643:47265-47284 | None:intergenic | 50.0% | |
| GAGCCCCAGACTGTAACAAA+TGG | + | tig0026643:47745-47764 | None:intergenic | 50.0% | |
| !! | GCTCTTGTTGTTGATCGTCG+CGG | - | tig0026643:47761-47780 | Msa1430210:intron | 50.0% |
| TATTTGCGCTCCCCAATAGC+AGG | + | tig0026643:47809-47828 | None:intergenic | 50.0% | |
| ! | TTGGGGAGCGCAAATATGAC+TGG | - | tig0026643:47813-47832 | Msa1430210:intron | 50.0% |
| ! | TGGGGAGCGCAAATATGACT+GGG | - | tig0026643:47814-47833 | Msa1430210:intron | 50.0% |
| GCCCTATCAGCTACTGAAGT+CGG | - | tig0026643:48641-48660 | Msa1430210:intron | 50.0% | |
| CAGACATGGCATACCAGTTC+CGG | + | tig0026643:49669-49688 | None:intergenic | 50.0% | |
| ! | TGCGTTGGTCTGTTATTCCC+TGG | - | tig0026643:49870-49889 | Msa1430210:intron | 50.0% |
| CGTTGCCACACATTATGGGT+TGG | - | tig0026643:50038-50057 | Msa1430210:CDS | 50.0% | |
| CGATCCCAACCCATAATGTG+TGG | + | tig0026643:50046-50065 | None:intergenic | 50.0% | |
| TTGAAAGCTGACTGTCCCAC+TGG | + | tig0026643:50086-50105 | None:intergenic | 50.0% | |
| ! | ACCACGCAAGCAAGCTTGCT+GGG | + | tig0026643:48415-48434 | None:intergenic | 55.0% |
| CGGAACTGGTATGCCATGTC+TGG | - | tig0026643:49667-49686 | Msa1430210:intron | 55.0% | |
| TCGGCCAACTTGACCAGACA+TGG | + | tig0026643:49683-49702 | None:intergenic | 55.0% | |
| GACCACGCAAGCAAGCTTGC+TGG | + | tig0026643:48416-48435 | None:intergenic | 60.0% | |
| ! | GCAAGCTTGCTTGCGTGGTC+AGG | - | tig0026643:48416-48435 | Msa1430210:intron | 60.0% |
| ! | GCCCAGCAAGCTTGCTTGCG+TGG | - | tig0026643:48411-48430 | Msa1430210:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026643 | gene | 47025 | 50494 | 47025 | ID=Msa1430210;Name=Msa1430210 |
| tig0026643 | mRNA | 47025 | 50494 | 47025 | ID=Msa1430210-mRNA-1;Parent=Msa1430210;Name=Msa1430210-mRNA-1;_AED=0.07;_eAED=0.07;_QI=88|1|1|1|1|1|8|344|222 |
| tig0026643 | exon | 47025 | 47485 | 47025 | ID=Msa1430210-mRNA-1:exon:6918;Parent=Msa1430210-mRNA-1 |
| tig0026643 | exon | 48346 | 48434 | 48346 | ID=Msa1430210-mRNA-1:exon:6917;Parent=Msa1430210-mRNA-1 |
| tig0026643 | exon | 48543 | 48610 | 48543 | ID=Msa1430210-mRNA-1:exon:6916;Parent=Msa1430210-mRNA-1 |
| tig0026643 | exon | 48790 | 48884 | 48790 | ID=Msa1430210-mRNA-1:exon:6915;Parent=Msa1430210-mRNA-1 |
| tig0026643 | exon | 49672 | 49764 | 49672 | ID=Msa1430210-mRNA-1:exon:6914;Parent=Msa1430210-mRNA-1 |
| tig0026643 | exon | 50030 | 50127 | 50030 | ID=Msa1430210-mRNA-1:exon:6913;Parent=Msa1430210-mRNA-1 |
| tig0026643 | exon | 50210 | 50280 | 50210 | ID=Msa1430210-mRNA-1:exon:6912;Parent=Msa1430210-mRNA-1 |
| tig0026643 | exon | 50369 | 50494 | 50369 | ID=Msa1430210-mRNA-1:exon:6911;Parent=Msa1430210-mRNA-1 |
| tig0026643 | five_prime_UTR | 50407 | 50494 | 50407 | ID=Msa1430210-mRNA-1:five_prime_utr;Parent=Msa1430210-mRNA-1 |
| tig0026643 | CDS | 50369 | 50406 | 50369 | ID=Msa1430210-mRNA-1:cds;Parent=Msa1430210-mRNA-1 |
| tig0026643 | CDS | 50210 | 50280 | 50210 | ID=Msa1430210-mRNA-1:cds;Parent=Msa1430210-mRNA-1 |
| tig0026643 | CDS | 50030 | 50127 | 50030 | ID=Msa1430210-mRNA-1:cds;Parent=Msa1430210-mRNA-1 |
| tig0026643 | CDS | 49672 | 49764 | 49672 | ID=Msa1430210-mRNA-1:cds;Parent=Msa1430210-mRNA-1 |
| tig0026643 | CDS | 48790 | 48884 | 48790 | ID=Msa1430210-mRNA-1:cds;Parent=Msa1430210-mRNA-1 |
| tig0026643 | CDS | 48543 | 48610 | 48543 | ID=Msa1430210-mRNA-1:cds;Parent=Msa1430210-mRNA-1 |
| tig0026643 | CDS | 48346 | 48434 | 48346 | ID=Msa1430210-mRNA-1:cds;Parent=Msa1430210-mRNA-1 |
| tig0026643 | CDS | 47369 | 47485 | 47369 | ID=Msa1430210-mRNA-1:cds;Parent=Msa1430210-mRNA-1 |
| tig0026643 | three_prime_UTR | 47025 | 47368 | 47025 | ID=Msa1430210-mRNA-1:three_prime_utr;Parent=Msa1430210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
